Citrus Sinensis ID: 021653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMKDIYHRFNRHNIITISFIVPYH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHcccccccccccHHHHEEEEHHHHHEEEccccccccc
Coil and Loop (DISEMBL)
mienmeekgsnshvkrqkggmitmpfifSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAAntltnfggtgsltpLIGAFVADAYAGRFWTITIASIIYQIGMICLTIsailpqlrpppcegeqvcqEANKGQVAILYVSLLLAALgsggirpcvvafgadqfdetdpkqatkTWKYFNWYYFVMGAAILVAVTVLVYIQdnigwgwglgipTFAMFLSIIAFLIgyplyrnldpagspfTRLLQVCVAAFRKrkltmvtdpkllyenEELDAAISLGGKLLHTKHMKDIYHRFNRHNIITISFIVPYH
Flexible Loop (DISEMBL)
mienmeekgsnshvkrqkggMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGadqfdetdpkQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKltmvtdpkllyeNEELDAAISLGGKLLHTKHMKDIYHRFNRHNIITISFIVPYH
Low Complexity Region (SEG)
MIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVslllaalgsggIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMKDIYHRFNRHNIITISFIVPYH
Disordered region (IsUnstruct)
*******************GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMKDIYHRFNRHNIITISFIVP**
Disordered Region (DISOPRED)
***N****************MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPP************KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETD*K*ATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYE****************TKHMKDIYHRFNRHNIITISFI*PY*
Disordered Region (DISEMBL)
***************RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMKDIYHRFNRHNIITISFIVPYH
Disordered Region (DISPRO)
*****EEKG***HV*RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMKDIYHRFNRHNIITISF*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMKDIYHRFNRHNIITISFIVPYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q9SX20	596	Probable nitrite transpor	yes	no	0.915	0.474	0.770	1e-124
Q9LFB8	570	Peptide transporter PTR5	no	no	0.867	0.470	0.490	5e-71
Q9M390	570	Peptide transporter PTR1	no	no	0.893	0.484	0.464	5e-70
P46032	585	Peptide transporter PTR2	no	no	0.896	0.473	0.478	7e-70
Q93Z20	590	Probable peptide/nitrate	no	no	0.928	0.486	0.452	1e-66
Q84WG0	545	Probable peptide/nitrate	no	no	0.809	0.458	0.474	1e-61
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.854	0.450	0.417	3e-57
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.828	0.439	0.417	4e-56
Q8LPL2	591	Probable peptide/nitrate	no	no	0.789	0.412	0.449	1e-55
Q9M817	607	Probable peptide transpor	no	no	0.789	0.401	0.431	4e-55

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  443 bits (1140), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/283 (77%), Positives = 248/283 (87%)

Query: 6   EEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT 65
           EEK  +    R KGG+ITMPFIF+NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTLT
Sbjct: 12  EEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query: 66  NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV 125
           NF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+V
Sbjct: 72  NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query: 126 CQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185
           C  A+  Q++ILYV+LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF M
Sbjct: 132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query: 186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQ 245
           GAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+L PAGSPFTRL+Q
Sbjct: 192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query: 246 VCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           V VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM 
Sbjct: 252 VGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMS 294

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  268 bits (684), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 133/271 (49%), Positives = 179/271 (66%), Gaps = 3/271 (1%)

Query: 15  KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
           K + G      FI   E CE+LA  G +TN+I+YL  Q++M    A+ +++N+ GT   T
Sbjct: 23  KNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYAT 82

Query: 75  PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV 134
           PLIGAF+ADAY GR+WTI    +IY  GM  LTISA +P L  P C GE  C  A  GQ 
Sbjct: 83  PLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGE-TCH-ATAGQT 139

Query: 135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT 194
           AI +++L L ALG+GGI+PCV +FGADQFD+TD K+      +FNW+YFV+    ++A +
Sbjct: 140 AITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASS 199

Query: 195 VLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR 254
           VLV+IQ N+GWGWGLG+PT AM ++++ F  G   YR   P GSP TR+LQV VA+ RK 
Sbjct: 200 VLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKS 259

Query: 255 KLTMVTDPKLLYENEELDAAISLGGKLLHTK 285
           K+ +  D  LLYEN++ +++I    KL HTK
Sbjct: 260 KVKIPEDESLLYENQDAESSIIGSRKLEHTK 290

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  265 bits (676), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 129/278 (46%), Positives = 174/278 (62%), Gaps = 2/278 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N   K + G      FI  NE CE+LA  G  TN+++YL ++L+     AAN +TN+ GT
Sbjct: 18  NPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGT 77

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
             +TPLIGAF+ADAY GR+WTI     IY  GM  LT+SA +P L+P  C  +  C   N
Sbjct: 78  CYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD-TCH-PN 135

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q A+ +V+L + ALG+GGI+PCV +FGADQFDE D  +  K   +FNW+YF +    L
Sbjct: 136 SSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGAL 195

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           +A TVLV+IQ N+GWGWG G+PT AM +++  F  G   YR   P GSP TR+ QV VAA
Sbjct: 196 IAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAA 255

Query: 251 FRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           FRK  + +  D  LL+E  + ++ I    KL+HT ++K
Sbjct: 256 FRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLK 293

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  264 bits (674), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 133/278 (47%), Positives = 177/278 (63%), Gaps = 1/278 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N  +K + G     PFI  NE CE+LA  G   N+I+YLTT+LH     AA  +T + GT
Sbjct: 35  NPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGT 94

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
             LTPLIGA +ADAY GR+WTI   S IY IGM  LT+SA +P L+P  C G+  C  A 
Sbjct: 95  CYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD-FCPSAT 153

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q A+ +  L L ALG+GGI+PCV +FGADQFD+TD ++  +   +FNW+YF +    L
Sbjct: 154 PAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGAL 213

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           V+ ++LV+IQ+N GWG G GIPT  M L+I +F  G PLYR   P GSP TR+ QV VA+
Sbjct: 214 VSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVAS 273

Query: 251 FRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           FRK  + +  D  LLYE ++ ++AI+   K+ HT   +
Sbjct: 274 FRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQ 311

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 133/294 (45%), Positives = 180/294 (61%), Gaps = 7/294 (2%)

Query: 2   IENMEEKGS-----NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMP 56
           + +  E GS     N   K++ G     PFI  NE CE+LA  G   N+I+Y T++LH  
Sbjct: 32  LSSTAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHES 91

Query: 57  LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLR 116
              AA+ +  + GT  +TPLIGA +AD+Y GR+WTI   S IY IGM  LT+SA LP L+
Sbjct: 92  NVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLK 151

Query: 117 PPPCEGEQ--VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT 174
           P  C G    +C  A   Q A+ +  L L ALG+GGI+PCV +FGADQFD+TDP++  + 
Sbjct: 152 PAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRK 211

Query: 175 WKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLD 234
             +FNW+YF +     ++ T+LV++Q+N+GWG G  IPT  M +SI +F IG PLYR   
Sbjct: 212 ASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQK 271

Query: 235 PAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           P GSP TR+ QV VAA+RK KL +  D   LYE  E ++ I+   K+ HT   K
Sbjct: 272 PGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYK 325

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/251 (47%), Positives = 156/251 (62%), Gaps = 1/251 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N  +K+  G     PFIF+NE CE+LA  G   N+I+Y T +LH     AA  +  + GT
Sbjct: 36  NPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGT 95

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
             +TPLIGA +ADAY GR+WTI   S IY  GM+ LT+SA +P L+P  C G  +C  A 
Sbjct: 96  CYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIG-SLCPPAT 154

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q  +L+  L L ALG+GGI+PCV +FGADQFD+TDP +  +   +FNW+YF +     
Sbjct: 155 MVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAF 214

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           V+ TVLV+IQ+N GW  G  IPT  M L+ ++F  G PLYR   P GSP T + QV VAA
Sbjct: 215 VSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAA 274

Query: 251 FRKRKLTMVTD 261
           +RK  L +  D
Sbjct: 275 YRKSNLKVPED 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  222 bits (565), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 162/266 (60%), Gaps = 2/266 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N   + Q G      F+   EV E++A  G ++N++ Y+TT+LH    K++N +TN+ GT
Sbjct: 21  NRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGT 80

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQE 128
             LTP++GA+VADA+ GR+ T  I+S IY +GM  LT+S  LP L+PP C    V  C++
Sbjct: 81  SWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEK 140

Query: 129 ANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA 188
           A+  Q+A+ + +L   A+G+GG +P +   GADQFDE DPK       +FNW+ F +   
Sbjct: 141 ASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFG 200

Query: 189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCV 248
              A TVLVY+QDN+GW  G G+ T  +  SI  FL+G  LYR+  P GSPFT++ +V V
Sbjct: 201 TFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIV 260

Query: 249 AAFRKRKLTMVTDPKLLYENEELDAA 274
           A+ RK +  M +D    YE   ++ A
Sbjct: 261 ASLRKAREPMSSDSTRFYELPPMEYA 286

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  218 bits (555), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 163/266 (61%), Gaps = 10/266 (3%)

Query: 14  VKRQ-KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGS 72
           V+R  +G      F+   EV E++A  G ++N+  Y+TT+LH    K++N +TN+ GT  
Sbjct: 23  VRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSW 82

Query: 73  LTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQEAN 130
           LTP++GA+V DA  GR+ T  I+  IY  GM+ LT+S  +P ++PP C    V  C++A+
Sbjct: 83  LTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKAS 142

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q+A+ + +L   A+G+GG +P +   GADQFD  DPK+ T+   +FNW+ F +    L
Sbjct: 143 VLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTL 202

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
            A TVLVY+QDN+GW  G G+PT  + +SI  FL+G P YR+  P GSPFT++ +V VA+
Sbjct: 203 FANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVAS 262

Query: 251 FRKRKLTMVTD-------PKLLYENE 269
           FRK    M  D       P L YE +
Sbjct: 263 FRKANAPMTHDITSFHELPSLEYERK 288

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  217 bits (552), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/247 (44%), Positives = 151/247 (61%), Gaps = 3/247 (1%)

Query: 15  KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
           +R KGG++TMPFI +NE  EK+A  G   NMI YL +   + L K    L  +    +  
Sbjct: 21  RRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFM 80

Query: 75  PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC--EGEQVCQEANKG 132
           PL+GAF++D+Y GRF TI IAS+   +GM+ L ++A+LPQ++P PC       C  A   
Sbjct: 81  PLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCSSATSS 140

Query: 133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFD-ETDPKQATKTWKYFNWYYFVMGAAILV 191
           Q+A+LY +  L ++GSGGIRPC +AFGADQ D + +PK       +F WYY     A+L+
Sbjct: 141 QLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAVLI 200

Query: 192 AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAF 251
           A TV+VYIQD++GW  G GIP   M L+   F+   PLY   D + S FT L QV  AA+
Sbjct: 201 AFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQVVAAAY 260

Query: 252 RKRKLTM 258
            KR LT+
Sbjct: 261 VKRNLTL 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 107/248 (43%), Positives = 154/248 (62%), Gaps = 4/248 (1%)

Query: 15  KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
           K+ KGG+ITMPFI +NE  EK+A  G   NMI YL       + K  N L  +    + T
Sbjct: 19  KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query: 75  PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV---CQEANK 131
           PL+GAF++D+Y GRF TI+IAS+   +GM+ L ++A+LPQ++P PC+       C  +  
Sbjct: 79  PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138

Query: 132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFD-ETDPKQATKTWKYFNWYYFVMGAAIL 190
            Q+A+LY +  L ++GSGGIRPC +AFGADQ D + +PK       +F WYY     A+L
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           +A T +VYIQ+++GW  G G+P   M ++ + F++  PLY       S FT L Q  VAA
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258

Query: 251 FRKRKLTM 258
           ++KRKL++
Sbjct: 259 YKKRKLSL 266

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
255576453	286	nitrate transporter, putative [Ricinus c	0.922	0.996	0.826	1e-135
297737830	795	unnamed protein product [Vitis vinifera]	0.912	0.354	0.789	1e-134
359472693	672	PREDICTED: probable nitrite transporter	0.912	0.419	0.789	1e-133
357488469	584	Peptide transporter PTR [Medicago trunca	0.919	0.486	0.772	1e-132
356495939	576	PREDICTED: probable nitrite transporter	0.912	0.489	0.802	1e-131
449465908	584	PREDICTED: probable nitrite transporter	0.919	0.486	0.721	1e-127
449514761	575	PREDICTED: probable nitrite transporter	0.889	0.478	0.734	1e-125
356498272	576	PREDICTED: probable nitrite transporter	0.883	0.473	0.783	1e-124
15221439	596	putative nitrite transporter [Arabidopsi	0.915	0.474	0.770	1e-122
297838617	597	proton-dependent oligopeptide transport	0.915	0.474	0.771	1e-121

>gi|255576453|ref|XP_002529118.1| nitrate transporter, putative [Ricinus communis] gi|223531397|gb|EEF33231.1| nitrate transporter, putative [Ricinus communis]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/288 (82%), Positives = 269/288 (93%), Gaps = 3/288 (1%)

Query: 2   IENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAA 61
           +E MEEKG ++  K QKGGMITMPFIF+NE CEKLAVVGFNTNMISYLTTQLH+PLTKAA
Sbjct: 1   MEKMEEKGFDA--KGQKGGMITMPFIFANEACEKLAVVGFNTNMISYLTTQLHLPLTKAA 58

Query: 62  NTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE 121
           NTLTNF GT SLTPL+GAF+AD+YAGRFWTIT+ASIIYQ+GM  LT+SA+LP LRPPPC+
Sbjct: 59  NTLTNFSGTSSLTPLLGAFLADSYAGRFWTITVASIIYQLGMTSLTLSAVLPNLRPPPCK 118

Query: 122 -GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 180
            G++VCQEA+ GQ+AILYVSLLL ALGSGGIRPCVVAFGADQFDETDPKQ TKTW+YFNW
Sbjct: 119 LGDEVCQEADAGQLAILYVSLLLGALGSGGIRPCVVAFGADQFDETDPKQTTKTWRYFNW 178

Query: 181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPF 240
           YYFVMG +IL+AVTVLVY+QDNIGWGWGLGIPT AMFLSIIAF++GYPLYRNLDPAGSPF
Sbjct: 179 YYFVMGVSILLAVTVLVYVQDNIGWGWGLGIPTIAMFLSIIAFIVGYPLYRNLDPAGSPF 238

Query: 241 TRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           TRLLQVCVAAF+KRKL++V+DPKLLY+N+ELDA IS+GG L+HTKHMK
Sbjct: 239 TRLLQVCVAAFKKRKLSVVSDPKLLYQNDELDAPISIGGNLVHTKHMK 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737830|emb|CBI27031.3| unnamed protein product [Vitis vinifera]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/285 (78%), Positives = 256/285 (89%), Gaps = 3/285 (1%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME+KGS  H  R KGG+ITMPFIF+NE CEKLAVVGF+ NMI+YLT QLH+PLTKAANT+
Sbjct: 1   MEKKGS--HGGRTKGGLITMPFIFANEACEKLAVVGFSANMITYLTQQLHLPLTKAANTI 58

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE- 123
           TNF GT SLTPL+GAF++DAYAGRFWTIT+ASI++Q+GM  LT+SA+LPQLRPPPC+GE 
Sbjct: 59  TNFSGTASLTPLLGAFISDAYAGRFWTITVASILWQMGMTSLTLSAVLPQLRPPPCKGEH 118

Query: 124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF 183
           QVCQEA+ GQ+AILY SLLL ALG+GGIRPCVVAFGADQFDETDPK+ TKTW +FNWYYF
Sbjct: 119 QVCQEADGGQLAILYGSLLLTALGAGGIRPCVVAFGADQFDETDPKEKTKTWNFFNWYYF 178

Query: 184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRL 243
           VMGA+ILVAVTVLVYIQDN+GWGWGLGIPT AMFLSII F++GYPLYRNLDP GSPFTRL
Sbjct: 179 VMGASILVAVTVLVYIQDNVGWGWGLGIPTTAMFLSIITFVVGYPLYRNLDPVGSPFTRL 238

Query: 244 LQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           LQVCVAA +KR L MV+DP LLYEN+ELDA+IS  GKLLHT  +K
Sbjct: 239 LQVCVAASKKRNLRMVSDPNLLYENDELDASISAAGKLLHTNELK 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472693|ref|XP_002282337.2| PREDICTED: probable nitrite transporter At1g68570 [Vitis vinifera]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/285 (78%), Positives = 256/285 (89%), Gaps = 3/285 (1%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME+KGS  H  R KGG+ITMPFIF+NE CEKLAVVGF+ NMI+YLT QLH+PLTKAANT+
Sbjct: 93  MEKKGS--HGGRTKGGLITMPFIFANEACEKLAVVGFSANMITYLTQQLHLPLTKAANTI 150

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE- 123
           TNF GT SLTPL+GAF++DAYAGRFWTIT+ASI++Q+GM  LT+SA+LPQLRPPPC+GE 
Sbjct: 151 TNFSGTASLTPLLGAFISDAYAGRFWTITVASILWQMGMTSLTLSAVLPQLRPPPCKGEH 210

Query: 124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF 183
           QVCQEA+ GQ+AILY SLLL ALG+GGIRPCVVAFGADQFDETDPK+ TKTW +FNWYYF
Sbjct: 211 QVCQEADGGQLAILYGSLLLTALGAGGIRPCVVAFGADQFDETDPKEKTKTWNFFNWYYF 270

Query: 184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRL 243
           VMGA+ILVAVTVLVYIQDN+GWGWGLGIPT AMFLSII F++GYPLYRNLDP GSPFTRL
Sbjct: 271 VMGASILVAVTVLVYIQDNVGWGWGLGIPTTAMFLSIITFVVGYPLYRNLDPVGSPFTRL 330

Query: 244 LQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           LQVCVAA +KR L MV+DP LLYEN+ELDA+IS  GKLLHT  +K
Sbjct: 331 LQVCVAASKKRNLRMVSDPNLLYENDELDASISAAGKLLHTNELK 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488469|ref|XP_003614522.1| Peptide transporter PTR [Medicago truncatula] gi|355515857|gb|AES97480.1| Peptide transporter PTR [Medicago truncatula]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/286 (77%), Positives = 258/286 (90%), Gaps = 2/286 (0%)

Query: 3   ENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAAN 62
           E ME+ G+ +  +R+KGG+ TMPFIF+NEV EKLAVVGFN NMISYLTTQLHMPLTKAAN
Sbjct: 6   EKMEKNGNLT--RRKKGGLATMPFIFANEVTEKLAVVGFNANMISYLTTQLHMPLTKAAN 63

Query: 63  TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG 122
           TLTNFGGT SLTPL+GAF++D++AG+F TIT+ASIIYQIGMI LT+SA+LPQLRPPPC+G
Sbjct: 64  TLTNFGGTSSLTPLLGAFISDSFAGKFMTITVASIIYQIGMISLTMSAVLPQLRPPPCKG 123

Query: 123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY 182
           E+VCQEA+  Q+AILYVSLLL+ALGSGGIRPCVVAFGADQFDE+DP Q T+TW YFNWYY
Sbjct: 124 EEVCQEASSRQLAILYVSLLLSALGSGGIRPCVVAFGADQFDESDPNQKTRTWTYFNWYY 183

Query: 183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTR 242
           FVMG AILVAVTVLVYIQDN+GWGWGLGIPT AMF+SIIAF+ GYPLYRNL+P GSPFTR
Sbjct: 184 FVMGTAILVAVTVLVYIQDNVGWGWGLGIPTLAMFISIIAFIGGYPLYRNLNPEGSPFTR 243

Query: 243 LLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           L++V VAAFRKRK+  V +  LLY+N+ELDA+I+LGGKLLH+  +K
Sbjct: 244 LVKVGVAAFRKRKIPKVPNSTLLYQNDELDASITLGGKLLHSDQLK 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495939|ref|XP_003516828.1| PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/284 (80%), Positives = 262/284 (92%), Gaps = 2/284 (0%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME+K   +H +R+KGG+ITMPFIF NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL
Sbjct: 1   MEQK--ENHARRKKGGLITMPFIFGNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 58

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ 124
           TNFGGT SLTPL+GAF+AD+YAG+FWT+T+ASIIYQIGMI LT+SA+LPQ RPPPC+GE+
Sbjct: 59  TNFGGTASLTPLLGAFIADSYAGKFWTVTLASIIYQIGMISLTLSAVLPQFRPPPCKGEE 118

Query: 125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 184
           VCQ+A+ GQ+AILY+SLLL ALGSGGIRPC+VAFGADQFDE+DPKQ T+TW YFNWYYFV
Sbjct: 119 VCQQASAGQLAILYISLLLGALGSGGIRPCIVAFGADQFDESDPKQTTRTWTYFNWYYFV 178

Query: 185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLL 244
           MG AILVAVTVLVYIQDNIGWG GLGIPT AMFLSIIAF++GYPLYRNL+P+GSPFTRL+
Sbjct: 179 MGVAILVAVTVLVYIQDNIGWGIGLGIPTIAMFLSIIAFIVGYPLYRNLNPSGSPFTRLV 238

Query: 245 QVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           QV VAAFRKRK+  V+ P LLY+N+ELDA+IS+GGKLLH+  MK
Sbjct: 239 QVAVAAFRKRKVPNVSHPSLLYQNDELDASISMGGKLLHSGQMK 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465908|ref|XP_004150669.1| PREDICTED: probable nitrite transporter At1g68570-like [Cucumis sativus]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 205/284 (72%), Positives = 248/284 (87%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME +    H++R+KGG+ITMPFIF+NE+CEK+AVVGFNTNMISYLT QLHMP TKAANT+
Sbjct: 1   MEMEKKEKHMERKKGGLITMPFIFANEICEKIAVVGFNTNMISYLTKQLHMPSTKAANTI 60

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ 124
           TNF GT SLTPLIGAF+AD+Y GRFWTIT+ASI+YQIGM+ LT SA++P LRPPPC+  +
Sbjct: 61  TNFSGTASLTPLIGAFIADSYVGRFWTITVASILYQIGMVSLTTSAVVPGLRPPPCKAGE 120

Query: 125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 184
           +C+EA  GQ+ ILYVSLLL ALGSGGIRPCVV+FGADQF+E DPK+ TKT+KYFNWYYF 
Sbjct: 121 ICKEATGGQLGILYVSLLLTALGSGGIRPCVVSFGADQFEEGDPKRGTKTYKYFNWYYFA 180

Query: 185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLL 244
           MGA++LVAVTVLVY+QDNIGWGWG GIPT AM +SII F++GYP+YR+LDP+GSPFTRLL
Sbjct: 181 MGASMLVAVTVLVYVQDNIGWGWGFGIPTIAMLVSIITFVVGYPIYRHLDPSGSPFTRLL 240

Query: 245 QVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           QV VAA++KRK+ +V+D  LLY+N ++D  IS  G LLHTKHM+
Sbjct: 241 QVGVAAYKKRKVCIVSDSNLLYQNRDIDDPISRDGNLLHTKHMR 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449514761|ref|XP_004164473.1| PREDICTED: probable nitrite transporter At1g68570-like [Cucumis sativus]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 202/275 (73%), Positives = 244/275 (88%)

Query: 14  VKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSL 73
           ++R+KGG+ITMPFIF+NE+CEK+AVVGFNTNMISYLT QLHMP TKAANT+TNF GT SL
Sbjct: 1   MERKKGGLITMPFIFANEICEKIAVVGFNTNMISYLTKQLHMPSTKAANTITNFSGTASL 60

Query: 74  TPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ 133
           TPLIGAF+AD+Y GRFWTIT+ASI+YQIGM+ LT SA++P LRPPPC+  ++C+EA  GQ
Sbjct: 61  TPLIGAFIADSYVGRFWTITVASILYQIGMVSLTTSAVVPGLRPPPCKAGEICKEATGGQ 120

Query: 134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV 193
           + ILYVSLLL ALGSGGIRPCVV+FGADQF+E DPK+ TKT+KYFNWYYF MGA++LVAV
Sbjct: 121 LGILYVSLLLTALGSGGIRPCVVSFGADQFEEGDPKRGTKTYKYFNWYYFAMGASMLVAV 180

Query: 194 TVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRK 253
           TVLVY+QDNIGWGWG GIPT AM +SII F++GYP+YR+LDP+GSPFTRLLQV VAA++K
Sbjct: 181 TVLVYVQDNIGWGWGFGIPTIAMLVSIITFVVGYPIYRHLDPSGSPFTRLLQVGVAAYKK 240

Query: 254 RKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           RK+ +V+D  LLY+N ++D  IS  G LLHTKHM+
Sbjct: 241 RKVCIVSDSNLLYQNRDIDDPISRDGNLLHTKHMR 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498272|ref|XP_003517977.1| PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/273 (78%), Positives = 250/273 (91%)

Query: 16  RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTP 75
           R+KGG+ITMPFIF+NEVCEKLAVVGFNTNM SYLTTQLHMPLTKAANTLTNFGGT SLTP
Sbjct: 10  RKKGGLITMPFIFANEVCEKLAVVGFNTNMNSYLTTQLHMPLTKAANTLTNFGGTASLTP 69

Query: 76  LIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVA 135
           L+GAF+AD+YAG+FWT+T+ASI+YQIGMI LT+SA+LPQ RPPPC+GE+VC++A+ GQ+A
Sbjct: 70  LLGAFIADSYAGKFWTVTVASILYQIGMISLTLSAVLPQFRPPPCKGEEVCRQASAGQLA 129

Query: 136 ILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV 195
           +LY+SLLL ALGSGGIRPC+VAFGADQF E+DPKQ TKTW YFNWYYFVMG A+LVAVTV
Sbjct: 130 VLYISLLLGALGSGGIRPCIVAFGADQFHESDPKQNTKTWSYFNWYYFVMGVAMLVAVTV 189

Query: 196 LVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRK 255
           LVYIQDNIGWG GLGIPT AMF SI AF++GYPLYRNL+P GSP+TRL+QV VAAF KR 
Sbjct: 190 LVYIQDNIGWGIGLGIPTIAMFFSIAAFIVGYPLYRNLNPDGSPYTRLVQVIVAAFHKRN 249

Query: 256 LTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           +  +++P LLY+N+ELDA+ISL GKLLHT+ MK
Sbjct: 250 VPYLSNPSLLYQNDELDASISLEGKLLHTEQMK 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221439|ref|NP_177024.1| putative nitrite transporter [Arabidopsis thaliana] gi|75266596|sp|Q9SX20.1|PTR18_ARATH RecName: Full=Probable nitrite transporter At1g68570 gi|5734721|gb|AAD49986.1|AC008075_19 Similar to gb|AF023472 peptide transporter from Hordeum vulgare and is a member of the PF|00854 Peptide transporter family. ESTs gb|T41927 and gb|AA395024 come from this gene [Arabidopsis thaliana] gi|20147231|gb|AAM10330.1| At1g68570/F24J5_7 [Arabidopsis thaliana] gi|25090385|gb|AAN72289.1| At1g68570/F24J5_7 [Arabidopsis thaliana] gi|110742209|dbj|BAE99031.1| peptide transporter like [Arabidopsis thaliana] gi|332196691|gb|AEE34812.1| putative nitrite transporter [Arabidopsis thaliana]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/283 (77%), Positives = 248/283 (87%)

Query: 6   EEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT 65
           EEK  +    R KGG+ITMPFIF+NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTLT
Sbjct: 12  EEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query: 66  NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV 125
           NF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+V
Sbjct: 72  NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query: 126 CQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185
           C  A+  Q++ILYV+LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF M
Sbjct: 132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query: 186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQ 245
           GAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+L PAGSPFTRL+Q
Sbjct: 192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query: 246 VCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           V VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM 
Sbjct: 252 VGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMS 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838617|ref|XP_002887190.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297333031|gb|EFH63449.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/284 (77%), Positives = 247/284 (86%), Gaps = 1/284 (0%)

Query: 6   EEKGSNSHVKRQKGGMITMPFIFS-NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           EEK  +    R KGG+ITMPFIF  NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTL
Sbjct: 12  EEKQLHGRPNRPKGGLITMPFIFGMNEICEKLAVVGFHANMISYLTTQLHLPLTKAANTL 71

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ 124
           TNF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+
Sbjct: 72  TNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEE 131

Query: 125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 184
           VC  A+  Q+ ILYV+LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF 
Sbjct: 132 VCVVADTAQLTILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFC 191

Query: 185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLL 244
           MGAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+LDPAGSPFTRL+
Sbjct: 192 MGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLDPAGSPFTRLI 251

Query: 245 QVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
           QV VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM 
Sbjct: 252 QVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMS 295

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.912	0.473	0.741	6.6e-113
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.867	0.470	0.464	1.8e-62
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.880	0.477	0.445	2.7e-61
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.883	0.466	0.459	1.2e-60
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.899	0.471	0.439	1.3e-59
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.809	0.458	0.446	7e-54
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.851	0.448	0.402	1.7e-50
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.889	0.466	0.398	2.2e-50
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.838	0.445	0.396	7.4e-50
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.789	0.401	0.411	6.7e-49

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
 Identities = 209/282 (74%), Positives = 238/282 (84%)

Query:     6 EEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT 65
             EEK  +    R KGG+ITMPFIF+NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTLT
Sbjct:    12 EEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query:    66 NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV 125
             NF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+V
Sbjct:    72 NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query:   126 CQEANKGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185
             C  A+  Q++ILYV           IRPCVVAFGADQFDE+DP Q TKTW YFNWYYF M
Sbjct:   132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query:   186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQ 245
             GAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+L PAGSPFTRL+Q
Sbjct:   192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query:   246 VCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHM 287
             V VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM
Sbjct:   252 VGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHM 293

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 126/271 (46%), Positives = 170/271 (62%)

Query:    15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             K + G      FI   E CE+LA  G +TN+I+YL  Q++M    A+ +++N+ GT   T
Sbjct:    23 KNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYAT 82

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV 134
             PLIGAF+ADAY GR+WTI    +IY  GM  LTISA +P L P  C GE  C  A  GQ 
Sbjct:    83 PLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-CSGE-TCH-ATAGQT 139

Query:   135 AILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT 194
             AI ++           I+PCV +FGADQFD+TD K+      +FNW+YFV+    ++A +
Sbjct:   140 AITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASS 199

Query:   195 VLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR 254
             VLV+IQ N+GWGWGLG+PT AM ++++ F  G   YR   P GSP TR+LQV VA+ RK 
Sbjct:   200 VLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKS 259

Query:   255 KLTMVTDPKLLYENEELDAAISLGGKLLHTK 285
             K+ +  D  LLYEN++ +++I    KL HTK
Sbjct:   260 KVKIPEDESLLYENQDAESSIIGSRKLEHTK 290

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 122/274 (44%), Positives = 164/274 (59%)

Query:    15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             K + G      FI  NE CE+LA  G  TN+++YL ++L+     AAN +TN+ GT  +T
Sbjct:    22 KEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYIT 81

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV 134
             PLIGAF+ADAY GR+WTI     IY  GM  LT+SA +P L+P  C  +  C   N  Q 
Sbjct:    82 PLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD-TCHP-NSSQT 139

Query:   135 AILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT 194
             A+ +V           I+PCV +FGADQFDE D  +  K   +FNW+YF +    L+A T
Sbjct:   140 AVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAAT 199

Query:   195 VLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR 254
             VLV+IQ N+GWGWG G+PT AM +++  F  G   YR   P GSP TR+ QV VAAFRK 
Sbjct:   200 VLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKI 259

Query:   255 KLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
              + +  D  LL+E  + ++ I    KL+HT ++K
Sbjct:   260 SVKVPEDKSLLFETADDESNIKGSRKLVHTDNLK 293

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 126/274 (45%), Positives = 168/274 (61%)

Query:    11 NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             N  +K + G     PFI  NE CE+LA  G   N+I+YLTT+LH     AA  +T + GT
Sbjct:    35 NPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGT 94

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
               LTPLIGA +ADAY GR+WTI   S IY IGM  LT+SA +P L+P  C G+  C  A 
Sbjct:    95 CYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD-FCPSAT 153

Query:   131 KGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
               Q A+ +            I+PCV +FGADQFD+TD ++  +   +FNW+YF +    L
Sbjct:   154 PAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGAL 213

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
             V+ ++LV+IQ+N GWG G GIPT  M L+I +F  G PLYR   P GSP TR+ QV VA+
Sbjct:   214 VSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVAS 273

Query:   251 FRKRKLTMVTDPKLLYENEELDAAISLGGKLLHT 284
             FRK  + +  D  LLYE ++ ++AI+   K+ HT
Sbjct:   274 FRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHT 307

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 123/280 (43%), Positives = 167/280 (59%)

Query:    11 NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             N   K++ G     PFI  NE CE+LA  G   N+I+Y T++LH     AA+ +  + GT
Sbjct:    46 NPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGT 105

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG--EQVCQE 128
               +TPLIGA +AD+Y GR+WTI   S IY IGM  LT+SA LP L+P  C G    +C  
Sbjct:   106 CYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSP 165

Query:   129 ANKGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA 188
             A   Q A+ +            I+PCV +FGADQFD+TDP++  +   +FNW+YF +   
Sbjct:   166 ATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIG 225

Query:   189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCV 248
               ++ T+LV++Q+N+GWG G  IPT  M +SI +F IG PLYR   P GSP TR+ QV V
Sbjct:   226 SFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLV 285

Query:   249 AAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
             AA+RK KL +  D   LYE  E ++ I+   K+ HT   K
Sbjct:   286 AAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYK 325

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 112/251 (44%), Positives = 148/251 (58%)

Query:    11 NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             N  +K+  G     PFIF+NE CE+LA  G   N+I+Y T +LH     AA  +  + GT
Sbjct:    36 NPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGT 95

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
               +TPLIGA +ADAY GR+WTI   S IY  GM+ LT+SA +P L+P  C G  +C  A 
Sbjct:    96 CYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIGS-LCPPAT 154

Query:   131 KGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
               Q  +L+            I+PCV +FGADQFD+TDP +  +   +FNW+YF +     
Sbjct:   155 MVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAF 214

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
             V+ TVLV+IQ+N GW  G  IPT  M L+ ++F  G PLYR   P GSP T + QV VAA
Sbjct:   215 VSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAA 274

Query:   251 FRKRKLTMVTD 261
             +RK  L +  D
Sbjct:   275 YRKSNLKVPED 285

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 107/266 (40%), Positives = 156/266 (58%)

Query:    12 SHVKR-QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             + V+R Q G      F+   EV E++A  G ++N++ Y+TT+LH    K++N +TN+ GT
Sbjct:    21 NRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGT 80

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQE 128
               LTP++GA+VADA+ GR+ T  I+S IY +GM  LT+S  LP L+PP C    V  C++
Sbjct:    81 SWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEK 140

Query:   129 ANKGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA 188
             A+  Q+A+ +             +P +   GADQFDE DPK       +FNW+ F +   
Sbjct:   141 ASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFG 200

Query:   189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCV 248
                A TVLVY+QDN+GW  G G+ T  +  SI  FL+G  LYR+  P GSPFT++ +V V
Sbjct:   201 TFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIV 260

Query:   249 AAFRKRKLTMVTDPKLLYENEELDAA 274
             A+ RK +  M +D    YE   ++ A
Sbjct:   261 ASLRKAREPMSSDSTRFYELPPMEYA 286

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 112/281 (39%), Positives = 165/281 (58%)

Query:    16 RQK-GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             R K GG  +   I   E  E+L  +G   N+++YLT  +H+    AANT+TNF GT  + 
Sbjct:    25 RSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFML 84

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG--EQVCQEANKG 132
              L+G F+AD + GR+ TI I + I   G+  LT+S I+P LRPP C       C++A+  
Sbjct:    85 CLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGI 144

Query:   133 QVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA 192
             Q+ +LY+           ++  V  FG+DQFDET+PK+ +K   +FN ++F +    L+A
Sbjct:   145 QLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLA 204

Query:   193 VTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFR 252
             VTVLVY+QD++G  WG GI  FA+ L++  FL G   YR     GSP T++  V VAA+R
Sbjct:   205 VTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWR 264

Query:   253 KRKLTMVTDPKLLYENEELDAAI-SLGGK--LLHTKHMKDI 290
              RKL +  DP  LY+ +++ AA  S+ GK  L HT+  + +
Sbjct:   265 NRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSL 305

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 104/262 (39%), Positives = 154/262 (58%)

Query:    14 VKRQ-KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGS 72
             V+R  +G      F+   EV E++A  G ++N+  Y+TT+LH    K++N +TN+ GT  
Sbjct:    23 VRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSW 82

Query:    73 LTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQEAN 130
             LTP++GA+V DA  GR+ T  I+  IY  GM+ LT+S  +P ++PP C    V  C++A+
Sbjct:    83 LTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKAS 142

Query:   131 KGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
               Q+A+ +             +P +   GADQFD  DPK+ T+   +FNW+ F +    L
Sbjct:   143 VLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTL 202

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
              A TVLVY+QDN+GW  G G+PT  + +SI  FL+G P YR+  P GSPFT++ +V VA+
Sbjct:   203 FANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVAS 262

Query:   251 FRKRKLTMVTDPKLLYENEELD 272
             FRK    M  D    +E   L+
Sbjct:   263 FRKANAPMTHDITSFHELPSLE 284

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 102/248 (41%), Positives = 145/248 (58%)

Query:    15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             K+ KGG+ITMPFI +NE  EK+A  G   NMI YL       + K  N L  +    + T
Sbjct:    19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV---CQEANK 131
             PL+GAF++D+Y GRF TI+IAS+   +GM+ L ++A+LPQ++P PC+       C  +  
Sbjct:    79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138

Query:   132 GQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETD-PKQATKTWKYFNWYYFVMGAAIL 190
              Q+A+LY            IRPC +AFGADQ D  + PK       +F WYY     A+L
Sbjct:   139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
             +A T +VYIQ+++GW  G G+P   M ++ + F++  PLY       S FT L Q  VAA
Sbjct:   199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258

Query:   251 FRKRKLTM 258
             ++KRKL++
Sbjct:   259 YKKRKLSL 266

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SX20	PTR18_ARATH	No assigned EC number	0.7703	0.9158	0.4748	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030327001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (583 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
pfam00854	372	pfam00854, PTR2, POT family	4e-48
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-25
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	6e-20
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	1e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-04
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	0.002

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  164 bits (418), Expect = 4e-48
 Identities = 78/198 (39%), Positives = 107/198 (54%), Gaps = 19/198 (9%)

Query: 89  FWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGS 148
           F TI + SIIY IG + LT+ AI P L P               QVA+ Y+ L L ALG+
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPV--------------QVALFYIGLYLIALGT 46

Query: 149 GGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWG 208
           GGI+P V AFGADQFDET   +      +F+W+YF + A  L+A  +  Y+Q N+G+  G
Sbjct: 47  GGIKPNVSAFGADQFDETQDPR---RDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLG 103

Query: 209 LGIPTFAMFLSIIAFLIGYPLYRNLDPA-GSPFTR-LLQVCVAAFRKRKLTMVTDPKLLY 266
            G+P   M L+++ FL+G   Y+   P  GSPFT  +  +  AA + RKL +  D   LY
Sbjct: 104 FGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLY 163

Query: 267 ENEELDAAISLGGKLLHT 284
              E     S+    +HT
Sbjct: 164 WALEKYNKRSISQTKVHT 181

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  106 bits (266), Expect = 1e-25
 Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 24/224 (10%)

Query: 38  VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI 97
             G  T ++ YL   L      A N    F     LTPLIGA +AD++ G+F TI   S+
Sbjct: 3   YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62

Query: 98  IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVA 157
           +Y +G    ++ A+ P L  P                A+  V L L ALG+GGI+PCV A
Sbjct: 63  VYVVGHALASLGAV-PSLGHPL-------------HDALSLVGLALIALGTGGIKPCVSA 108

Query: 158 FGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG-------WGWGLG 210
           FG DQF+E   +Q +  +++F+++YF + A  L +  +   ++ ++G       +    G
Sbjct: 109 FGGDQFEE---RQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFG 165

Query: 211 IPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR 254
           +P   M L++I F +G  +Y+   P G+  +++++  V A +KR
Sbjct: 166 VPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 89.7 bits (223), Expect = 6e-20
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 28/204 (13%)

Query: 27  IFSNEVCEKLAVVGFNTNMISYLTTQ----LHMPLTKAANTLTNFGGTGSLTPLIGAFVA 82
           IF  E+ E+ +  G    +I YL  Q    L    T A    + +G    LTP+IG ++A
Sbjct: 26  IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85

Query: 83  DAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLL 142
           D   G   TI + +I+  IG + L IS++                         LY+ L 
Sbjct: 86  DRVLGTRRTIVLGAILMAIGHLVLAISSV--------------------SGPGGLYIGLA 125

Query: 143 LAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 202
           L  +G+G  +P + +   + + + DP++       F  +Y  +    L+A  +   +  N
Sbjct: 126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGG----FTLFYMGINIGSLIAPIITGLLAIN 181

Query: 203 IGWGWGLGIPTFAMFLSIIAFLIG 226
            GW  G G+    M + ++ FL+G
Sbjct: 182 YGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 25/201 (12%)

Query: 26  FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY 85
           ++ + ++ E  +  G    +I YLT QL      A    + +     +TP++G F+AD  
Sbjct: 13  YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV 72

Query: 86  AGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAA 145
            G    + + +++  IG + L  S I P                     + LY+SL +  
Sbjct: 73  LGNRMAVMLGALLMAIGHVVLGASEIHP---------------------SFLYLSLAIIV 111

Query: 146 LGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGW 205
            G G  +  V     + ++ TDP++       F+  Y       ++A     Y Q+   W
Sbjct: 112 CGYGLFKSNVSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSW 167

Query: 206 GWGLGIPTFAMFLSIIAFLIG 226
             G G+    M   ++ FL G
Sbjct: 168 AMGFGLAAVGMIAGLVIFLCG 188

Length = 493

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 29/187 (15%)

Query: 43  TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG 102
           +  +  L   L +  ++A   ++ F    +L  L+  +++D + GR   + +  +++ +G
Sbjct: 19  SPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALG 77

Query: 103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQ 162
            + L  ++ L  L                       V   L  LG G + P   A  A+ 
Sbjct: 78  SLLLAFASSLWLL----------------------LVGRFLLGLGGGALYPAAAALIAEW 115

Query: 163 FDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA 222
           F   +  +A         +    G   L+   +   + +++GW W   I      L  + 
Sbjct: 116 FPPKERGRA------LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169

Query: 223 FLIGYPL 229
            L    L
Sbjct: 170 LLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 29/217 (13%)

Query: 36  LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA 95
           L        +  YL   L +  T+    LT F    +L   +   ++D + GR   + I 
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68

Query: 96  SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCV 155
            +++ +G++ L  ++                       + +L V  +L  LG G + P  
Sbjct: 69  LLLFALGLLLLLFAS----------------------SLWLLLVLRVLQGLGGGALFPAA 106

Query: 156 VAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFA 215
            A  AD F   +  +A              G    +   +   +    GW     I    
Sbjct: 107 AALIADWFPPEERGRA------LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAIL 160

Query: 216 MFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFR 252
             L+ +   +  P          P        V A++
Sbjct: 161 ALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197

Length = 346

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 27/202 (13%)

Query: 27  IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK--AANTLTNFGGTGSLTPLIGAFVADA 84
           +F  E+ E+ +  G    +  YL  Q  +  ++  A      +     L   +G +  D 
Sbjct: 15  LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74

Query: 85  YAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLA 144
             G   T+ +  I+  +G   L +S                          +++  L   
Sbjct: 75  VWGTKKTMVLGGIVLMLGHFMLAMSIYP----------------------DLIFYGLGTI 112

Query: 145 ALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG 204
           A+GSG  +    +     ++  D  +       F  +Y  +     ++  +   I +N G
Sbjct: 113 AVGSGLFKANPSSMVGKLYERGDMPRRDGG---FTLFYMSINIGSFISPLLAGVIAENYG 169

Query: 205 WGWGLGIPTFAMFLSIIAFLIG 226
           +  G  +    M + ++ F  G
Sbjct: 170 YHVGFNLAAVGMVIGLLTFFAG 191

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.93
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.9
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.9
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.89
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.88
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.78
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.77
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.77
PRK10054	395	putative transporter; Provisional	99.77
PRK03545	390	putative arabinose transporter; Provisional	99.77
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.76
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.75
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.74
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.74
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.74
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.74
TIGR00891	405	2A0112 putative sialic acid transporter.	99.74
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.73
PRK12382	392	putative transporter; Provisional	99.73
PRK10642	490	proline/glycine betaine transporter; Provisional	99.72
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.72
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.72
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.72
TIGR00900	365	2A0121 H+ Antiporter protein.	99.72
PRK10504	471	putative transporter; Provisional	99.72
PRK10091	382	MFS transport protein AraJ; Provisional	99.71
PRK05122	399	major facilitator superfamily transporter; Provisi	99.71
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.71
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.71
TIGR00895	398	2A0115 benzoate transport.	99.71
PRK12307	426	putative sialic acid transporter; Provisional	99.71
PRK11663	434	regulatory protein UhpC; Provisional	99.7
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.7
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.69
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.69
TIGR00893	399	2A0114 d-galactonate transporter.	99.69
PRK03893	496	putative sialic acid transporter; Provisional	99.68
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.68
PRK03699	394	putative transporter; Provisional	99.67
PRK09705	393	cynX putative cyanate transporter; Provisional	99.67
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.67
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.67
PRK11043	401	putative transporter; Provisional	99.67
PLN00028	476	nitrate transmembrane transporter; Provisional	99.67
KOG0254	513	consensus Predicted transporter (major facilitator	99.67
PRK10133	438	L-fucose transporter; Provisional	99.66
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.66
PRK09874	408	drug efflux system protein MdtG; Provisional	99.66
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.66
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.65
PRK09952	438	shikimate transporter; Provisional	99.65
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.65
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.64
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.64
PRK03633	381	putative MFS family transporter protein; Provision	99.64
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.63
PRK10642	490	proline/glycine betaine transporter; Provisional	99.63
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.63
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.63
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.63
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.62
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.62
PRK10489	417	enterobactin exporter EntS; Provisional	99.61
KOG0569	485	consensus Permease of the major facilitator superf	99.59
PRK15011	393	sugar efflux transporter B; Provisional	99.59
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.59
TIGR00805	633	oat sodium-independent organic anion transporter.	99.59
TIGR00898	505	2A0119 cation transport protein.	99.59
PRK15075	434	citrate-proton symporter; Provisional	99.59
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.58
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.58
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.58
PRK15011	393	sugar efflux transporter B; Provisional	99.57
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.56
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.56
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.56
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.55
PRK03699	394	putative transporter; Provisional	99.55
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.54
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.54
PRK05122	399	major facilitator superfamily transporter; Provisi	99.54
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.53
PRK09952	438	shikimate transporter; Provisional	99.52
KOG2532	466	consensus Permease of the major facilitator superf	99.51
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.51
PRK09528	420	lacY galactoside permease; Reviewed	99.51
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.5
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.5
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.5
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.49
PRK11010	491	ampG muropeptide transporter; Validated	99.48
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.48
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.48
PRK11902	402	ampG muropeptide transporter; Reviewed	99.48
PTZ00207	591	hypothetical protein; Provisional	99.47
PRK09705	393	cynX putative cyanate transporter; Provisional	99.47
TIGR00901	356	2A0125 AmpG-related permease.	99.47
PRK03893	496	putative sialic acid transporter; Provisional	99.47
PRK12382	392	putative transporter; Provisional	99.45
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.44
TIGR00893	399	2A0114 d-galactonate transporter.	99.44
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.44
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.44
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.44
PRK09874	408	drug efflux system protein MdtG; Provisional	99.44
PRK03545	390	putative arabinose transporter; Provisional	99.44
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.44
TIGR00891	405	2A0112 putative sialic acid transporter.	99.43
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.43
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.43
PRK10489	417	enterobactin exporter EntS; Provisional	99.43
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.42
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.42
PRK03633	381	putative MFS family transporter protein; Provision	99.42
PRK09528	420	lacY galactoside permease; Reviewed	99.42
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.41
PRK11663	434	regulatory protein UhpC; Provisional	99.41
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.41
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.4
PRK15075	434	citrate-proton symporter; Provisional	99.4
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.39
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.39
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.38
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.38
PRK11010	491	ampG muropeptide transporter; Validated	99.36
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.35
PLN00028	476	nitrate transmembrane transporter; Provisional	99.35
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.35
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.34
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.3
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.29
PRK10504	471	putative transporter; Provisional	99.29
TIGR00900	365	2A0121 H+ Antiporter protein.	99.28
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.28
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.27
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.27
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.26
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.26
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.25
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.25
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.25
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.23
KOG2533	495	consensus Permease of the major facilitator superf	99.23
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.23
TIGR00895	398	2A0115 benzoate transport.	99.23
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.23
KOG2615	451	consensus Permease of the major facilitator superf	99.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.22
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.22
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.22
PRK12307	426	putative sialic acid transporter; Provisional	99.22
PRK09669	444	putative symporter YagG; Provisional	99.22
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.22
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.21
PRK10091	382	MFS transport protein AraJ; Provisional	99.21
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.21
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.2
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.19
PRK11902	402	ampG muropeptide transporter; Reviewed	99.17
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.17
PRK10133	438	L-fucose transporter; Provisional	99.17
PRK09848	448	glucuronide transporter; Provisional	99.16
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.16
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.16
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.16
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.14
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.14
PF13347	428	MFS_2: MFS/sugar transport protein	99.14
PRK10429	473	melibiose:sodium symporter; Provisional	99.13
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.12
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.11
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.1
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.1
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.1
PRK10429	473	melibiose:sodium symporter; Provisional	99.1
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.09
PF13347	428	MFS_2: MFS/sugar transport protein	99.08
PRK10054	395	putative transporter; Provisional	99.08
PRK11462	460	putative transporter; Provisional	99.06
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.06
TIGR00901	356	2A0125 AmpG-related permease.	99.06
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.05
PRK09848	448	glucuronide transporter; Provisional	99.02
TIGR00898	505	2A0119 cation transport protein.	99.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.99
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.99
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.98
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.98
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.95
PRK11043	401	putative transporter; Provisional	98.92
PRK09669	444	putative symporter YagG; Provisional	98.91
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.9
COG2211	467	MelB Na+/melibiose symporter and related transport	98.89
KOG0569	485	consensus Permease of the major facilitator superf	98.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.82
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.81
COG2211	467	MelB Na+/melibiose symporter and related transport	98.81
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.81
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.8
PRK11462	460	putative transporter; Provisional	98.75
KOG2532	466	consensus Permease of the major facilitator superf	98.73
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.7
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.7
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.67
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.67
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.63
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.62
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.62
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.58
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.57
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.56
COG0477	338	ProP Permeases of the major facilitator superfamil	98.55
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.44
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.42
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.42
KOG2563	480	consensus Permease of the major facilitator superf	98.41
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.37
KOG2533	495	consensus Permease of the major facilitator superf	98.37
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.35
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.34
KOG3626	735	consensus Organic anion transporter [Secondary met	98.23
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.22
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.2
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.12
PF12832	77	MFS_1_like: MFS_1 like family	98.1
KOG0254	513	consensus Predicted transporter (major facilitator	98.03
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.02
TIGR00805	633	oat sodium-independent organic anion transporter.	97.98
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.79
KOG3762	618	consensus Predicted transporter [General function	97.77
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.76
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.71
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.65
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.64
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.64
PTZ00207	591	hypothetical protein; Provisional	97.61
PRK03612	521	spermidine synthase; Provisional	97.56
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.44
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.38
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.36
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.29
KOG2563	480	consensus Permease of the major facilitator superf	97.28
KOG0637	498	consensus Sucrose transporter and related proteins	97.26
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.25
KOG2615	451	consensus Permease of the major facilitator superf	97.21
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.1
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.03
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.01
KOG3626	735	consensus Organic anion transporter [Secondary met	96.71
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.55
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.18
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.97
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.78
KOG3762	618	consensus Predicted transporter [General function	95.48
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.47
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.42
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.41
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	95.38
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.94
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.85
KOG1330	493	consensus Sugar transporter/spinster transmembrane	93.72
KOG3097	390	consensus Predicted membrane protein [Function unk	93.69
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	89.78
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	89.41
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	87.92
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	81.23

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=9.2e-34  Score=273.74  Aligned_cols=278  Identities=47%  Similarity=0.804  Sum_probs=254.1

Q ss_pred             cCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHH
Q 021653           17 QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (309)
Q Consensus        17 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~   96 (309)
                      ++++|+++.++++.+.++++++|++..|+..|++..+|.+...++..++.+.+..++.++++++++|.|+||++++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCC---CCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhh
Q 021653           97 IIYQIGMICLTISAILPQLRPPPC---EGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  173 (309)
Q Consensus        97 ~l~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~  173 (309)
                      +++.+|..+++.+..+|.+++..|   ...+.|+.+++.+...++.++.+.++|.|+.+++..++.+||+++.++.++..
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            999999999999999999999997   34578999999999999999999999999999999999999999887778888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcceeccCCCCChhHHHHHHHHHHHHc
Q 021653          174 TWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRK  253 (309)
Q Consensus       174 r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (309)
                      +.++|+|+++..++|..++..+..|++++.||.++|.++.+++++++++|+++.+.|+.++|.++|.+.+++++.++.++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcchhhhhhhhhhhhcCCcccCCccccccccccccccccccCC
Q 021653          254 RKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMKDIYHRFNRHNIITISF  304 (309)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  304 (309)
                      ++...+.+.+++.+.      .....+...++.|+    ++|||++.++.|
T Consensus       272 ~~~~~~~~~~~~~~~------~~~~~~~~~t~~f~----~l~kaa~~~~~~  312 (571)
T KOG1237|consen  272 RKAVVSLDPEELYYD------CTDSVAIEGTKPFR----FLDKAALKTSDD  312 (571)
T ss_pred             HhccCCCcchhcccc------ccccccccCCcccc----hhhHhhccCCcc
Confidence            988877765443111      11112334588999    999999997754

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.94  E-value=4e-26  Score=212.03  Aligned_cols=193  Identities=27%  Similarity=0.473  Sum_probs=178.4

Q ss_pred             ccCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcC----CCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHH
Q 021653           16 RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH----MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT   91 (309)
Q Consensus        16 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~   91 (309)
                      ..-++.|.++.+..++++|||+|||+...+..|++.+++    +|.+++..+.+.+....++.++++||++||++|+|++
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            335678999999999999999999999999999999988    9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhh
Q 021653           92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (309)
Q Consensus        92 i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~  171 (309)
                      +.+|.+++++|.++++.+.                    ......+++++.++++|.|+..+++..+++|++|++|+   
T Consensus        95 I~lGail~~iGh~~L~~~~--------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp---  151 (498)
T COG3104          95 IVLGAILMAIGHLVLAISS--------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP---  151 (498)
T ss_pred             HHHHHHHHHHHHHHHhccc--------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc---
Confidence            9999999999999999752                    01566799999999999999999999999999999987   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcceec
Q 021653          172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRN  232 (309)
Q Consensus       172 ~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~  232 (309)
                       +|-..|+.+|.++|+|++++|.+++++.+++||..+|.+.++-+.++++.++.+++.+..
T Consensus       152 -rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~  211 (498)
T COG3104         152 -RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKG  211 (498)
T ss_pred             -ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence             688889999999999999999999999999999999999999999999999988776543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.93  E-value=5e-24  Score=204.85  Aligned_cols=190  Identities=17%  Similarity=0.300  Sum_probs=167.2

Q ss_pred             cCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHH
Q 021653           17 QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (309)
Q Consensus        17 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~   96 (309)
                      .+++||.++.+++.+++|++++|++..+++.|+++++|++..+++++.+.+....++.++++|+++||++||||+++++.
T Consensus         9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~   88 (489)
T PRK10207          9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA   88 (489)
T ss_pred             hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999559999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhH
Q 021653           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (309)
Q Consensus        97 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  176 (309)
                      +++.+|.+++.++..                     ....++++|.++++|.|+..++..++++|++|++++    +|++
T Consensus        89 ~~~~~g~~~~~~~~~---------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~  143 (489)
T PRK10207         89 IVLAIGYFMTGMSLL---------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDG  143 (489)
T ss_pred             HHHHHHHHHHHHhcc---------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhc
Confidence            999999998887651                     233466889999999999999999999999998642    4677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCccee
Q 021653          177 YFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYR  231 (309)
Q Consensus       177 ~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~  231 (309)
                      .+++++++.|+|+.++|.+++++.+..||++.|++.++.++++++.+...++.++
T Consensus       144 ~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~  198 (489)
T PRK10207        144 AFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVK  198 (489)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhc
Confidence            8999999999999999999999999999999999987766666666665554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.90  E-value=2.3e-22  Score=192.91  Aligned_cols=189  Identities=19%  Similarity=0.312  Sum_probs=166.9

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh--cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ--LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA   95 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~   95 (309)
                      .++.+..+.+++.++++++++|++..+++.|++++  +|++..+++.+.+.+.++.+++++++|+++||++|||+++.++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            34567788888999999999999999999999987  9999999999999999999999999999999955999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhh
Q 021653           96 SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  175 (309)
Q Consensus        96 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~  175 (309)
                      .++..++.+++.++.                      +...+++++.+.|+|.|+..++..++++|++|++++   ++|+
T Consensus        86 ~~~~~~g~~~~~~~~----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~  140 (475)
T TIGR00924        86 GIVLMLGHFMLAMSI----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRD  140 (475)
T ss_pred             HHHHHHHHHHHHhcc----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---cccc
Confidence            999999998888765                      566788899999999999999999999999987632   1588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCccee
Q 021653          176 KYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYR  231 (309)
Q Consensus       176 ~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~  231 (309)
                      +.+++++++.|+|+.+++.+.+++.++.||++.|.+.++..+++.+.+...++.++
T Consensus       141 ~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       141 GGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             ceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            89999999999999999999999999999999999988777777666666555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.90  E-value=3.8e-22  Score=196.35  Aligned_cols=203  Identities=31%  Similarity=0.607  Sum_probs=176.9

Q ss_pred             HHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 021653           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQL  115 (309)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~  115 (309)
                      |++|++..++..|+++.+|++.+.+..+.+.+....++.++++|+++|+++||+++++++.+++.+|.++++++. .|..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence            468999999999999999999999999999999999999999999999999999999999999999999998765 2211


Q ss_pred             CCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021653          116 RPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (309)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~  195 (309)
                      .             .......+++++.+.++|.|++.+++.++++||+++++   ++++.++|+|+|+++|+|+++++++
T Consensus        80 ~-------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i  143 (654)
T TIGR00926        80 G-------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTII  143 (654)
T ss_pred             c-------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0             01234557789999999999999999999999998643   3368999999999999999999999


Q ss_pred             HHHhhccc-------cchhhhhHHHHHHHHHHHHHHHhCcceeccCCCCChhHHHHHHHHHHHHcCC
Q 021653          196 LVYIQDNI-------GWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRK  255 (309)
Q Consensus       196 ~~~i~~~~-------gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (309)
                      .+++++.+       +|..+|.+++++++++++++..+++++++.+|.+++..+..+++..+.+++.
T Consensus       144 ~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~  210 (654)
T TIGR00926       144 TPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRF  210 (654)
T ss_pred             HHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhh
Confidence            99998543       6999999999999999999999999888877888888888888888777643

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.89  E-value=1.7e-21  Score=185.89  Aligned_cols=186  Identities=23%  Similarity=0.416  Sum_probs=161.7

Q ss_pred             CccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 021653           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~   99 (309)
                      +++.++.+++.++++++.+|++..+++.|+++.+|++..+++.+.+.+....+++++++|+++||++||||++.++.++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999669999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      .+|.+++....                     .....++++..+.++|.|...++..++++|++|++++    +|.+.++
T Consensus        87 ~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~  141 (493)
T PRK15462         87 AIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFS  141 (493)
T ss_pred             HHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceeh
Confidence            99987665432                     0223355666677788898889999999999998643    6888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcce
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLY  230 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  230 (309)
                      ++|...|+|+.++|.+++++.+..||+.+|.+.++.++++++.++...+.+
T Consensus       142 i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l  192 (493)
T PRK15462        142 LMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHF  192 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999998887777777776665544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.88  E-value=4e-21  Score=185.44  Aligned_cols=185  Identities=19%  Similarity=0.365  Sum_probs=158.8

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH
Q 021653           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (309)
Q Consensus        19 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l   98 (309)
                      ++.+.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+....+..++++|+++||++|||+++.++.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999998888888787888889999999944999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      ..+|..++.++.                     .....+++++++.|+|.|...++..++++|++|++++    ++.+.+
T Consensus        98 ~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~  152 (500)
T PRK09584         98 LAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAF  152 (500)
T ss_pred             HHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcc
Confidence            999988887653                     0345677889999999999999999999999987532    456678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      ++++++.++|+.++|.+.+++.++.||++.|++.++..+++++.+....+
T Consensus       153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~  202 (500)
T PRK09584        153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQR  202 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            89999999999999999999999999999999988777666655554443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.78  E-value=2.7e-17  Score=154.17  Aligned_cols=190  Identities=11%  Similarity=0.122  Sum_probs=155.3

Q ss_pred             cccccccCCCccccccCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021653            2 IENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFV   81 (309)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~l   81 (309)
                      .+++.++...  +...|..|+....+....++.....|.....++. +.+++|+++.+.+...+....+..++.++.|++
T Consensus         2 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l   78 (394)
T PRK10213          2 SEFIAENRGA--DAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQT   78 (394)
T ss_pred             CccccCCCCC--ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444322  2344667877666665555555555555555555 457899999999999999999999999999999


Q ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhc
Q 021653           82 ADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGAD  161 (309)
Q Consensus        82 aD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad  161 (309)
                      +||+ |||+.+..+.++..++.++...+.                      +.+.+++.|++.|++.|...+....++.|
T Consensus        79 ~Dr~-grr~~~~~~~~~~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  135 (394)
T PRK10213         79 IQAT-DRRYVVILFAVLLTLSCLLVSFAN----------------------SFSLLLIGRACLGLALGGFWAMSASLTMR  135 (394)
T ss_pred             hccc-CcHHHHHHHHHHHHHHHHHHHHHC----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9996 999999999999999888887765                      78999999999999999999999999999


Q ss_pred             ccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Q 021653          162 QFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       162 ~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      .+|++      +|+...+.+..+.++|..++|.+++++.+..||++.|++.+++.++..+..
T Consensus       136 ~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~  191 (394)
T PRK10213        136 LVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWI  191 (394)
T ss_pred             HcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence            99977      799999999999999999999999999999999999988776655544333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1e-18  Score=160.90  Aligned_cols=174  Identities=13%  Similarity=0.167  Sum_probs=152.8

Q ss_pred             CccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 021653           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~   99 (309)
                      .++.+..+.++.++++.--|.+...+ .=.++.+|.++...+.+.+++.+...++++++|+++||| .|++++.+|..++
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW  108 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIW  108 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHH
Confidence            34556666677777777777666533 334567899999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      .++.+...++.                      .++++.+.|.+.|+|.+...+..+.+++|.||..      +|++.++
T Consensus       109 ~~Av~~~~fs~----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~  160 (493)
T KOG1330|consen  109 TLAVFASGFSN----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLG  160 (493)
T ss_pred             HHHHHHHHHHH----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHH
Confidence            99999999987                      8999999999999999999999999999999988      8999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHHH
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~~~  223 (309)
                      ++|+++++|+.+|.++++++.+..+ ||++|+..+++.++..++.
T Consensus       161 ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~  205 (493)
T KOG1330|consen  161 IFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLV  205 (493)
T ss_pred             HhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHH
Confidence            9999999999999999999988776 9999999888876655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.77  E-value=4.2e-17  Score=153.76  Aligned_cols=177  Identities=14%  Similarity=0.125  Sum_probs=146.9

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~   97 (309)
                      |.+|+..+.+.+..+++......+.. ....+++++|++..+.+++.+++.++..+++++.|+++||+ |||+++.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence            33566555555555555554444443 44588899999999999999999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHH
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  177 (309)
                      ++.++.+++.++.                      +...++++|++.|++.|+..+....+++|.+|++      +|++.
T Consensus        82 ~~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~  133 (412)
T TIGR02332        82 LWGIASTATMFAT----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARA  133 (412)
T ss_pred             HHHHHHHHHHHhc----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHH
Confidence            9999999988876                      7888999999999999999988888999999976      79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc------cccchhhhhHHHHHHHHHHHHHH
Q 021653          178 FNWYYFVMGAAILVAVTVLVYIQD------NIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       178 ~~~~~~~~~iG~~l~~~~~~~i~~------~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      .++++.+.++|..+++.+.+++.+      ..|||+.|++.++..++..++.+
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~  186 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999888763      46999999997776655444433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10054 putative transporter; Provisional

Probab=99.77  E-value=9.6e-17  Score=150.53  Aligned_cols=173  Identities=13%  Similarity=0.135  Sum_probs=149.0

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      |+.+.+++..++..+..+.+..+++.|+++++|++..+.+.+.+...++..++.++.|+++||+ |||+++.++.++..+
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~~   85 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFAS   85 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHHH
Confidence            4566777778888888888889999999999999999999999999999999999999999996 999999999998888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +.++..++.                      +.+.+++.+.+.+.+.+...++...+.+|.+|++      +|++.+++.
T Consensus        86 ~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~  137 (395)
T PRK10054         86 GFIAIPLVN----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLN  137 (395)
T ss_pred             HHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHH
Confidence            888777766                      6667777788888887877888889999999876      799999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      +...++|..++|.+.+++.+ .+|+..|++.+++.++..++..
T Consensus       138 ~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~  179 (395)
T PRK10054        138 YTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ  179 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999998875 6899999988877766654433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.77  E-value=7e-17  Score=150.87  Aligned_cols=176  Identities=9%  Similarity=0.044  Sum_probs=145.6

Q ss_pred             CccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 021653           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~   99 (309)
                      +|...+.+.+..++.....+.....+ ..+.+++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence            35445555554555444434322223 456789999999999999999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      .++.++..++.                      +.+.++++|+++|++.+...+...+++.|.+|++      +|++..+
T Consensus        85 ~~~~~~~~~~~----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g  136 (390)
T PRK03545         85 IASHVLSALAW----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALS  136 (390)
T ss_pred             HHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHH
Confidence            99998888776                      7888999999999999988899999999999977      7999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      ++..+.++|..+++.+.+.+.+..|||+.|++.+++.++..+....
T Consensus       137 ~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        137 LLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988899999999988776665544333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.76  E-value=1.3e-16  Score=150.60  Aligned_cols=152  Identities=11%  Similarity=0.147  Sum_probs=132.0

Q ss_pred             hHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccc
Q 021653           49 LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQE  128 (309)
Q Consensus        49 l~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (309)
                      +.+++|.+..+.+..++.+.++..++.++.|+++||+ |||++++.+.+++.++.+++..+.                  
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------  102 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------  102 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence            5678999999999999999999999999999999996 999999999999999988888766                  


Q ss_pred             ccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q 021653          129 ANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWG  208 (309)
Q Consensus       129 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~  208 (309)
                          +...++++|+++|++.+...+....+..|.+|++      ++++..+++....++|..++|.+++++.+..|||+.
T Consensus       103 ----~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~  172 (413)
T PRK15403        103 ----SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVL  172 (413)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence                7888999999999999877777778889999976      688889999999999999999999999888899999


Q ss_pred             hhHHHHHHHHHHHHHHHhCcc
Q 021653          209 LGIPTFAMFLSIIAFLIGYPL  229 (309)
Q Consensus       209 f~i~~~~~~~~~~~~~~~~~~  229 (309)
                      |++.++..+++.+..+...|+
T Consensus       173 f~~~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        173 FAIIAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            998887766665544443343

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.75  E-value=9.9e-17  Score=146.38  Aligned_cols=165  Identities=16%  Similarity=0.292  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~  108 (309)
                      +..++..+........++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++..+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhh
Confidence            344455555555555666588899999999999999999999999999999999996 9999999999999999555554


Q ss_pred             HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHH
Q 021653          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (309)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG  188 (309)
                      +.                      +.+.+++++++.|++.+...+....++.|.+|++      +|++.+++.+...++|
T Consensus        82 ~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g  133 (352)
T PF07690_consen   82 AS----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLG  133 (352)
T ss_dssp             HC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHH
T ss_pred             hh----------------------hHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhh
Confidence            44                      5568899999999999999999999999999997      6999999999999999


Q ss_pred             HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       189 ~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      ..+++.+.+++.+..+|++.|++.+++.++..++
T Consensus       134 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  134 SILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            9999999999998899999999999888777654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.74  E-value=2.9e-16  Score=145.97  Aligned_cols=152  Identities=15%  Similarity=0.066  Sum_probs=121.7

Q ss_pred             HHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 021653           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (309)
Q Consensus        44 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  123 (309)
                      ...+.+.+++|++..+.+.+.+.+.+++.+++++.|+++||+ |||+++..+......+.+ .....             
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~-------------   76 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP-------------   76 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh-------------
Confidence            344566789999999999999999999999999999999997 999987665554444432 22221             


Q ss_pred             cccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021653          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (309)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~  203 (309)
                              .+...++++|++.|+|.+.. .+.....+|.+|++      +|++..++.+.+..+|..+++.+.+++.+..
T Consensus        77 --------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~  141 (368)
T TIGR00903        77 --------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAG  141 (368)
T ss_pred             --------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                    16788999999999999864 45555568999976      7999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHH
Q 021653          204 GWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       204 gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      |||..|.+.+++.++..++.+.
T Consensus       142 gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       142 GLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH
Confidence            9999998877766555444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.74  E-value=4.8e-16  Score=144.01  Aligned_cols=177  Identities=17%  Similarity=0.151  Sum_probs=145.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      +.++.+....++..+........+| .+.+++|.+..+.+.+.+.+..+..++.++.|+++||+ |||+++.++.++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~   82 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFAL   82 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHH
Confidence            3444444444445554444444444 56678999999999999999999999999999999996 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +.+++..+.                      +.+.++++|++.|++.+...+....++.|.+|++      +|++..+++
T Consensus        83 ~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  134 (385)
T TIGR00710        83 SSLGLALSN----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSIL  134 (385)
T ss_pred             HHHHHHHHc----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHH
Confidence            888887766                      7788899999999999999999999999999976      799999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      +...++|..+++.+.+++.+..+|+..|++.+++.++..+..+...|
T Consensus       135 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (385)
T TIGR00710       135 MPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILP  181 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999988899999998887776665554444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.74  E-value=2.6e-16  Score=151.82  Aligned_cols=179  Identities=12%  Similarity=0.059  Sum_probs=147.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      |..+..+.+..++.......+...+|.. .+++|.+..+.+++.+.+.++...+.++.|+++||+ |||++++++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            4455555555666655555455555544 678999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      ++.+++..+.                      +.+.++++|+++|+|.++..+.....+.+.+++++     +|++.+++
T Consensus        83 ~~~~~~~~a~----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~  135 (495)
T PRK14995         83 LASLAAAFSP----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGV  135 (495)
T ss_pred             HHHHHHHHcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHH
Confidence            9999988876                      88899999999999999988887777777774322     79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      +....++|..++|.+++++.+..|||+.|++...+.++.+++.+...|
T Consensus       136 ~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~  183 (495)
T PRK14995        136 WAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP  183 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999877666655544444444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.74  E-value=6.7e-16  Score=142.15  Aligned_cols=181  Identities=12%  Similarity=0.099  Sum_probs=162.7

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~   97 (309)
                      +..|..++.+.+..|.....=+....-++ -+.+++|.|..+++..++.|..+..+++++...+.||+ .||+.++....
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp-~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLP-PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            44566666666666666666565555554 55689999999999999999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHH
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  177 (309)
                      ++++|.++.+++.                      ++.++.++|++.|+..|.+.+...+..++..|++      +|++.
T Consensus        87 lFi~~n~l~alAp----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~A  138 (394)
T COG2814          87 LFIVSNLLSALAP----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRA  138 (394)
T ss_pred             HHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhH
Confidence            9999999999998                      9999999999999999999999999999999998      79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       178 ~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      .+....+.++...+|..++.++.+.+|||..|++.+.+.++.++..+...|
T Consensus       139 iaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         139 LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999998888888877777

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.74  E-value=4.5e-16  Score=144.88  Aligned_cols=174  Identities=11%  Similarity=0.172  Sum_probs=147.9

Q ss_pred             cCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHH
Q 021653           17 QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (309)
Q Consensus        17 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~   96 (309)
                      .+.+|+....+.+..++..+..+...... ..+++++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~   84 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI   84 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            45677777777777777777666555544 466789999999999999999999999999999999996 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhH
Q 021653           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (309)
Q Consensus        97 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  176 (309)
                      ++..++.+++.++.                      +.+.++++|++.|+|.+...+....++.|.+|++      +|++
T Consensus        85 ~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~  136 (405)
T TIGR00891        85 VLFSAGTLACGFAP----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNK  136 (405)
T ss_pred             HHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhH
Confidence            99999888887766                      7788899999999999999999999999999987      7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccc--chhhhhHHHHHHHHHH
Q 021653          177 YFNWYYFVMGAAILVAVTVLVYIQDNIG--WGWGLGIPTFAMFLSI  220 (309)
Q Consensus       177 ~~~~~~~~~~iG~~l~~~~~~~i~~~~g--w~~~f~i~~~~~~~~~  220 (309)
                      ..++++.+.++|..+++.+.+.+.+..+  |++.|.+.++..++.+
T Consensus       137 ~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       137 ASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888877665  9999887655544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.73  E-value=7.1e-16  Score=144.87  Aligned_cols=168  Identities=13%  Similarity=0.130  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~  104 (309)
                      ++++...++...+.+.+...++.|+++++|++..+.+.+.+...+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            5566777788888888888999999999999999999999999999999999999999996 999999999999999888


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH
Q 021653          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (309)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~  184 (309)
                      ++....                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|++..++++..
T Consensus        92 ~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~  143 (400)
T PRK11646         92 TMAIAH----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQ  143 (400)
T ss_pred             HHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHH
Confidence            887655                      6778889999999999988888899999999876      799999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       185 ~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      .++|..++|.+++++. ..||++.|++.++..++..++
T Consensus       144 ~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        144 DSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988 679999999877766555433

>PRK12382 putative transporter; Provisional

Probab=99.73  E-value=8.6e-16  Score=143.45  Aligned_cols=171  Identities=15%  Similarity=0.096  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      .+.+.+..++...........++.|+.+++|+|..+.+.+.+.+.++..+++++.|+++||+ |||+.+.++.++..++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLAG   95 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHHH
Confidence            34444455555555555667788889999999999999999999999999999999999996 99999999988777665


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      +........+..              ...+...++++|++.|+|.+...+....++.|.+|++      +|++..+++..
T Consensus        96 ~~~~~~~~~~~~--------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~  155 (392)
T PRK12382         96 LAYLLAAILPVS--------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGM  155 (392)
T ss_pred             HHHHhhhccccc--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHH
Confidence            543332211110              0126778899999999999998888888999999876      79999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhHHHHH
Q 021653          184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFA  215 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~  215 (309)
                      +.++|..+++.+++++.+..||+..+.+..+.
T Consensus       156 ~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        156 AMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            99999999999999998888999876655443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.72  E-value=6.6e-16  Score=148.83  Aligned_cols=187  Identities=10%  Similarity=0.041  Sum_probs=131.1

Q ss_pred             CccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 021653           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~   99 (309)
                      .|+.....+...++..+.+|++..++|.|+++.+|++..+.........++..++.+++|+++||+ |||+++.++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            344444444445556778888999999999989999998888777788888899999999999996 9999998887654


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      .++.+.+.....                   ..+...+++++++.+++.++..+....+..|.+|++      .|++..+
T Consensus       327 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~------~Rg~~~g  381 (490)
T PRK10642        327 FVLAIPAFILIN-------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH------IRYSALA  381 (490)
T ss_pred             HHHHHHHHHHHh-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc------cchHHHH
Confidence            443333222110                   014566777888888887777777888889999988      6999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc-cchhhhhHHHHHHHHHHH--HHHHhCcceec
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNI-GWGWGLGIPTFAMFLSII--AFLIGYPLYRN  232 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~-gw~~~f~i~~~~~~~~~~--~~~~~~~~~~~  232 (309)
                      +.+....+++.++|.+.+++.+.. +|+.++++..+..++.++  .+.+++|++..
T Consensus       382 ~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~  437 (490)
T PRK10642        382 AAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            744445566678888888887654 466665554444433332  23356665543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.72  E-value=4.8e-16  Score=155.17  Aligned_cols=166  Identities=15%  Similarity=0.116  Sum_probs=136.4

Q ss_pred             HHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 021653           42 NTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (309)
Q Consensus        42 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~  121 (309)
                      ...+.+++.++++++..+.+++.+.+.++..++++++|+++||+ |||+++++++++..++.+++.++.           
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~-----------  253 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ-----------  253 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            44455677789999999999999999999999999999999996 999999999999999888888776           


Q ss_pred             CccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021653          122 GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (309)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~  201 (309)
                                 +.+.++++|++.|+|.|+..++.+.+++|.+|.+      .|+...+++..+..+|.++++.++..+..
T Consensus       254 -----------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~  316 (742)
T TIGR01299       254 -----------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIP  316 (742)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       7888999999999999999999999999999987      79999999999999999998876655443


Q ss_pred             c-------------ccchhhhhHHHHHHHHHHHH--HHHhCcceeccCCC
Q 021653          202 N-------------IGWGWGLGIPTFAMFLSIIA--FLIGYPLYRNLDPA  236 (309)
Q Consensus       202 ~-------------~gw~~~f~i~~~~~~~~~~~--~~~~~~~~~~~~~~  236 (309)
                      .             .+||+.+++.++..++.+++  +.+++|+|...+.+
T Consensus       317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr  366 (742)
T TIGR01299       317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGK  366 (742)
T ss_pred             hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCC
Confidence            2             35888887766655544433  34566777544433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.72  E-value=1.2e-15  Score=143.28  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=129.4

Q ss_pred             HhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccc
Q 021653           48 YLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQ  127 (309)
Q Consensus        48 yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  127 (309)
                      .+.+++|.+..+.+...+.+.++..++.++.|.++||+ |||+.+.++.++..++.++...+.                 
T Consensus        38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~-----------------   99 (406)
T PRK15402         38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ-----------------   99 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc-----------------
Confidence            35578999999999999999999999999999999996 999999999998888888877665                 


Q ss_pred             cccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 021653          128 EANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGW  207 (309)
Q Consensus       128 ~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~  207 (309)
                           +.+.+++.|++.|++.+...+....++.|.+|++      +|.+..++.+....+|..++|.+.+++.+..+|++
T Consensus       100 -----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~  168 (406)
T PRK15402        100 -----SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRG  168 (406)
T ss_pred             -----cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence                 6778889999999999988888889999999876      67777888777778899999999999988889999


Q ss_pred             hhhHHHHHHHHHHHHHHHhCc
Q 021653          208 GLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       208 ~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      .|++.+++.++..+..+...|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~  189 (406)
T PRK15402        169 MFVLFAALAALSFFGLWRAMP  189 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC
Confidence            998877776665554433333

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.72  E-value=8.2e-16  Score=144.09  Aligned_cols=174  Identities=14%  Similarity=0.140  Sum_probs=146.0

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~   97 (309)
                      +.+|..........+++.+..+......+ .+.+++|+++.+.+.+.+...++..++.++.|+++||+ |||+++.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence            34566666666666666666655555444 55678999999999999999999999999999999996 99999999998


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHH
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  177 (309)
                      +..++.+++.++.                      +...+++.|++.|++.+...+....+++|.+|++      +|++.
T Consensus        89 ~~~~~~~~~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~  140 (406)
T PRK11551         89 LFGLFSLATAQAW----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTA  140 (406)
T ss_pred             HHHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHH
Confidence            8888887777665                      7788899999999999999999999999999876      79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHH
Q 021653          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (309)
Q Consensus       178 ~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~  221 (309)
                      .++++.+.++|..+++.+...+.+..+|+..|++.+++.++..+
T Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (406)
T PRK11551        141 VSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP  184 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888888999999887765554443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.72  E-value=1.2e-15  Score=139.68  Aligned_cols=173  Identities=14%  Similarity=0.086  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~  106 (309)
                      ++...++..+........++.|.. +++.+..+.+.+.+...++..++.++.|+++||+ |||+++.++.++..++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            344555555655555666777665 6899999999999999999999999999999996 99999999998888887777


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHH
Q 021653          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (309)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~  186 (309)
                      ......+                 ..+.+.+++++++.|++.+...+...++++|.+|++      +|++..++++.+.+
T Consensus        82 ~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  138 (365)
T TIGR00900        82 PFVALLG-----------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRS  138 (365)
T ss_pred             HHHHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHH
Confidence            6654111                 126788899999999999999999999999999977      79999999999999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       187 iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      +|..+++.+.+++.+..||++.|++.++..++..+..+
T Consensus       139 ~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       139 LFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998889999999887776655544433

>PRK10504 putative transporter; Provisional

Probab=99.72  E-value=1.5e-15  Score=145.20  Aligned_cols=177  Identities=14%  Similarity=0.111  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+.+.+..++..+..+.+...+|.+. +++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            456666667777777777777777776 47999999999999999999999999999999996 9999999998888888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      .++..++.                      +...++++|++.|+|.|...+....++.|.+|++      +|++..+++.
T Consensus        89 ~~~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  140 (471)
T PRK10504         89 SLFCALSG----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVT  140 (471)
T ss_pred             HHHHHHhC----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHH
Confidence            87766654                      6778889999999999999999999999999876      7899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcc
Q 021653          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPL  229 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  229 (309)
                      ...++|..++|.+.+++.+..||++.|.+......+..++.....|+
T Consensus       141 ~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        141 LPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999998776665555554444444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.71  E-value=9.3e-16  Score=143.02  Aligned_cols=177  Identities=12%  Similarity=0.113  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      .++.+.+..++.....+.....++ .+.+++|++..+.+.+.+.+..+..+++++.|+++||+ |||+++.++.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIG   81 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHH
Confidence            345555566666666555555555 45679999999999999999999999999999999996 9999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      .+++..+.                      +.+.+++.|++.|++.|...+....+..|.+|++      +|++..+.+.
T Consensus        82 ~~l~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  133 (382)
T PRK10091         82 NAMFTLSS----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMV  133 (382)
T ss_pred             HHHHHHhC----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHH
Confidence            98888776                      7889999999999999998888888889998876      6888889888


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcc
Q 021653          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPL  229 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  229 (309)
                      .+.++|..+++.+.+++.+..+||+.|++.+++.++..+..+...|+
T Consensus       134 ~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~  180 (382)
T PRK10091        134 SGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPD  180 (382)
T ss_pred             HHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            89999999999999999888999999999887666555444333443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.71  E-value=1.7e-15  Score=141.74  Aligned_cols=179  Identities=12%  Similarity=0.039  Sum_probs=146.5

Q ss_pred             CccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 021653           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~   99 (309)
                      .++.+..+.+..++..+........++.|+++++|.|..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.+++
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            345566666777777777766777888899999999999999999999999999999999999996 9999999999988


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      .++.+.+.++......              ...+...+++.|++.|+|.+...+....+..|..|++      +|++..+
T Consensus        92 ~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~  151 (399)
T PRK05122         92 ALSGLLYLLAGLLAAW--------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVIS  151 (399)
T ss_pred             HHHHHHHHHhhhhhcc--------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchh
Confidence            8877666554311100              0114667889999999999999999999999999877      6899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~  219 (309)
                      ++..+.++|..+++.+++++.+..||+..+++..++.++.
T Consensus       152 ~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        152 WNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG  191 (399)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            9888899999999999999988899998887766554433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.71  E-value=1.6e-15  Score=143.84  Aligned_cols=169  Identities=15%  Similarity=0.165  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcC---CCHHHHHH---HHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLH---MPLTKAAN---TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~---~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      +..+++.+.... ...+..++.++++   .+..+.+.   +.+...++..++++++|+++||+ |||+++.++.+++.++
T Consensus        29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~  106 (432)
T PRK10406         29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFG  106 (432)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence            334455554443 4455667777874   55554333   33444455558999999999996 9999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      .++..++......              .......+++.|+++|+|.|+..+....+++|.+|++      +|+...+..+
T Consensus       107 ~~~~~~~~~~~~~--------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~  166 (432)
T PRK10406        107 SLVIACLPGYETI--------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQY  166 (432)
T ss_pred             HHHHhhcCCchhH--------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHH
Confidence            9888765411000              0013457889999999999999999999999999987      6898888888


Q ss_pred             HHHHHHHHHHHHHHHHhh--------ccccchhhhhHHHHHHHHH
Q 021653          183 FVMGAAILVAVTVLVYIQ--------DNIGWGWGLGIPTFAMFLS  219 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~--------~~~gw~~~f~i~~~~~~~~  219 (309)
                      .+.+.|..+++.+...+.        +..|||++|++.++..++.
T Consensus       167 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        167 VTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            888888888876654443        2579999999877655544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.71  E-value=2.1e-15  Score=141.01  Aligned_cols=173  Identities=12%  Similarity=0.090  Sum_probs=141.6

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH
Q 021653           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (309)
Q Consensus        19 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l   98 (309)
                      +.+|..+.+.....+..+........++ ++.+++|+|+.+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            3466666666666666655544444444 45678999999999999999999999999999999996 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      ..++.+++..+.                      +...+++.|++.|++.+...+....+..|.++.+      +++...
T Consensus        83 ~~~~~~~~~~~~----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~  134 (394)
T PRK11652         83 FILGTLVALFAH----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHAN  134 (394)
T ss_pred             HHHHHHHHHHHc----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHH
Confidence            888888777655                      6788899999999999888777778888888765      688888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHH
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~  221 (309)
                      +++..+..+|..++|.+.+++.+..||++.|++.++..++..+
T Consensus       135 ~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        135 SLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            8888999999999999999998888999999887766554433

>TIGR00895 2A0115 benzoate transport

Probab=99.71  E-value=1.4e-15  Score=140.98  Aligned_cols=174  Identities=12%  Similarity=0.092  Sum_probs=141.4

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH
Q 021653           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (309)
Q Consensus        19 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l   98 (309)
                      ..|+.........+...+..+. .....+++.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~   91 (398)
T TIGR00895        14 YQWRAIILSFLIMLMDGYDLAA-MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILL   91 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHH
Confidence            3455444444444444444433 33445566778999999999999999999999999999999996 999999999988


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      ..++.+++....                      +.+.+++.+++.|++.+...+....+++|.+|++      +|++..
T Consensus        92 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~  143 (398)
T TIGR00895        92 FSVFTLLCALAT----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAV  143 (398)
T ss_pred             HHHHHHHHHHcc----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhH
Confidence            888887777655                      6778889999999999999999999999999976      799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      ++++.+.++|..+++.+.+++.+..||+..|++.+++..+..++
T Consensus       144 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  187 (398)
T TIGR00895       144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL  187 (398)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence            99999999999999999999999999999998876554444333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.71  E-value=1.1e-15  Score=144.13  Aligned_cols=168  Identities=13%  Similarity=0.163  Sum_probs=142.8

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~   97 (309)
                      +.+|+......+..+...+..+.. ..+..++++++|+++.+.+.+.+.+.++..+++++.|+++||+ |||+++.++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~   91 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV   91 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence            344555555555555555555443 3444567789999999999999999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHH
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  177 (309)
                      +..++.+++.++.                      +.+.++++|++.|+|.|...+....++.|.+|++      +|++.
T Consensus        92 ~~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~  143 (426)
T PRK12307         92 AYSVGTGLSGLAS----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKA  143 (426)
T ss_pred             HHHHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHh
Confidence            9999998888877                      7888999999999999999999999999999987      79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHH
Q 021653          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFA  215 (309)
Q Consensus       178 ~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~  215 (309)
                      .++++.+..+|..+++.+.+.+.+..+|++.|++..+.
T Consensus       144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            99999999999999999988888889999999875543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.70  E-value=1.3e-15  Score=144.46  Aligned_cols=164  Identities=15%  Similarity=0.127  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~  106 (309)
                      .++..++..+..+.....++.+ .+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~  105 (434)
T PRK11663         28 MYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILF  105 (434)
T ss_pred             HHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHH
Confidence            3334444444444445555555 457999999999999999999999999999999996 99999999999999998888


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHH
Q 021653          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (309)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~  186 (309)
                      ..+.                      +.+.+++.|++.|++.|...+....+++|++|++      +|++..++++.+.+
T Consensus       106 ~~~~----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~  157 (434)
T PRK11663        106 GFSS----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHN  157 (434)
T ss_pred             HHHh----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHH
Confidence            8776                      7788888999999999998899999999999976      79999999999999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 021653          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       187 iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~  220 (309)
                      +|..+++.+.+++.+..|||+.|++.+++.++..
T Consensus       158 ~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        158 VGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            9999999999999988999999988777654443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.70  E-value=1.2e-15  Score=145.99  Aligned_cols=172  Identities=12%  Similarity=0.206  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~  104 (309)
                      ..+....++..+....... ..+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++++.++..++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~-~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNV-AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHH
Confidence            3344444444444443333 44556678999999999999999999999999999999996 999999999999999988


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH
Q 021653          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (309)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~  184 (309)
                      ++..+.                      +...++++|++.|+|.+...+....++.|.+|++      +|++..++++..
T Consensus        83 ~~~~~~----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~  134 (485)
T TIGR00711        83 LCGVAP----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLT  134 (485)
T ss_pred             HHhCcC----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHH
Confidence            887665                      7788999999999999999999999999999976      799999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHh
Q 021653          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       185 ~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      ..+|..+++.+.+++.+..+|++.|++.+.+.++..++....
T Consensus       135 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  176 (485)
T TIGR00711       135 VLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFI  176 (485)
T ss_pred             HHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999998776665555444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.69  E-value=1.1e-16  Score=149.07  Aligned_cols=155  Identities=44%  Similarity=0.820  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCCh
Q 021653           89 FWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP  168 (309)
Q Consensus        89 ~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~  168 (309)
                      +|++++|.+++++|.+++++++..+. .            +++.+.+.++++++++++|.|+.++++.++++||+++++ 
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~-~------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~-   66 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPS-L------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD-   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSS-C------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT-
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcch-h------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc-
Confidence            58999999999999999998883322 2            134467889999999999999999999999999999873 


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcceecc-CCCCChhHH-HHHH
Q 021653          169 KQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNL-DPAGSPFTR-LLQV  246 (309)
Q Consensus       169 ~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~  246 (309)
                        +.+|.++|+|+|+++|+|+++++.+.++++++.||.++|+++++.+++++++++.++++|+.+ +|.+++..+ ...+
T Consensus        67 --~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~  144 (372)
T PF00854_consen   67 --DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLV  144 (372)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHH
T ss_pred             --hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHH
Confidence              338999999999999999999999999999999999999999999999999999999998877 667777776 4455


Q ss_pred             HHHHHHcCCCCCC
Q 021653          247 CVAAFRKRKLTMV  259 (309)
Q Consensus       247 ~~~~~~~~~~~~~  259 (309)
                      .....+++....|
T Consensus       145 ~~~~~~~~~~~~~  157 (372)
T PF00854_consen  145 LVAAFKKRKLAVP  157 (372)
T ss_dssp             HHHHHHHHCCCH-
T ss_pred             HHHHHHHhhcccc
Confidence            5555555555444

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.69  E-value=2.3e-15  Score=138.37  Aligned_cols=151  Identities=17%  Similarity=0.143  Sum_probs=130.6

Q ss_pred             HHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021653           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (309)
Q Consensus        43 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~  122 (309)
                      ..+.+++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.++.            
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~------------   89 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD------------   89 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH------------
Confidence            3456778889999999999999999999999999999999996 999999999999999999888877            


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021653          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (309)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~  202 (309)
                                +.+.++++|.+.|+|.+...+.......|.+|+       +|++..+++..+.++|..+++.+.+.+.+.
T Consensus        90 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (377)
T TIGR00890        90 ----------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINL  152 (377)
T ss_pred             ----------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence                      888899999999999998888888888888874       588999999999999988776676777777


Q ss_pred             ccchhhhhHHHHHHHHHHHHH
Q 021653          203 IGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       203 ~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      .+||+.|++.+++.++..+..
T Consensus       153 ~~~~~~f~~~~~~~~~~~~~~  173 (377)
T TIGR00890       153 EGVPAAFIYMGIIFLLVIVLG  173 (377)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH
Confidence            899999998887766554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.69  E-value=1.5e-15  Score=139.94  Aligned_cols=152  Identities=13%  Similarity=0.201  Sum_probs=135.8

Q ss_pred             HHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 021653           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (309)
Q Consensus        44 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  123 (309)
                      ...+++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.++.             
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~-------------   80 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG-------------   80 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc-------------
Confidence            344567889999999999999999999999999999999996 999999999999999988888776             


Q ss_pred             cccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021653          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (309)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~  203 (309)
                               +.+.++++|++.|+|.+...+....++.|.+|++      +|++..++++...++|..+++.+.+++.+..
T Consensus        81 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  145 (399)
T TIGR00893        81 ---------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHF  145 (399)
T ss_pred             ---------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhC
Confidence                     7888999999999999999999999999999976      7999999999999999999999999988889


Q ss_pred             cchhhhhHHHHHHHHHHHHHH
Q 021653          204 GWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       204 gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      +|++.|++.+++.++..++.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~  166 (399)
T TIGR00893       146 SWQWAFIIEGVLGIIWGVLWL  166 (399)
T ss_pred             CchHHHHHHHHHHHHHHHHhh
Confidence            999999988776665544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.68  E-value=5.5e-15  Score=142.15  Aligned_cols=169  Identities=12%  Similarity=0.184  Sum_probs=142.1

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~   97 (309)
                      +.+|+....+.+..++..+...... .+..++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            3455555555555555555544443 444567789999999999999999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHH
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  177 (309)
                      +..++.+++.++.                      +.+.++++|++.|++.++..+....++.|.+|++      +|+..
T Consensus        94 ~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~  145 (496)
T PRK03893         94 LFSVGTLACGFAP----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKA  145 (496)
T ss_pred             HHHHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHH
Confidence            9999988888776                      7888999999999999999999999999999976      78999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Q 021653          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM  216 (309)
Q Consensus       178 ~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~  216 (309)
                      .+.++.+.++|..+++.+.+++.+..+|++.|++.++..
T Consensus       146 ~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~  184 (496)
T PRK03893        146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI  184 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999988754433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.68  E-value=7.2e-15  Score=135.40  Aligned_cols=164  Identities=15%  Similarity=0.197  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      .+...+..++.....+.....+|.++++++|++..+.+.+.+...++..+++++.|+++||+ |||+.+.++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            34445555555666666677777679999999999999999999999999999999999996 99999999999999988


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      +++..+.                     .+.+.++++|++.|++.+. .+....+++|.+|++      +|+...+++..
T Consensus        82 ~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~------~r~~~~~~~~~  133 (366)
T TIGR00886        82 LWAGLAV---------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKK------IQGTALGLAAG  133 (366)
T ss_pred             HHHHHHh---------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHh------hhhHHHHHHHH
Confidence            8777654                     0567788899999998665 456678899999876      68999998887


Q ss_pred             HHHHHHHHHHHHHHHhhc----------cccchhhhhH-HHHHH
Q 021653          184 VMGAAILVAVTVLVYIQD----------NIGWGWGLGI-PTFAM  216 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~----------~~gw~~~f~i-~~~~~  216 (309)
                      ..++|..+++.+.+.+..          ..+|++.|++ .+++.
T Consensus       134 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~  177 (366)
T TIGR00886       134 WGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGIL  177 (366)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence            777787777766655443          3489999843 34433

>PRK03699 putative transporter; Provisional

Probab=99.67  E-value=1e-14  Score=136.58  Aligned_cols=175  Identities=11%  Similarity=0.126  Sum_probs=142.2

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH
Q 021653           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (309)
Q Consensus        19 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l   98 (309)
                      ++||..+...+..++.....+.....++. +.+++|+|..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            44566666656666665555555555554 5678999999999999999999999999999999996 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      ..++.+++.++.                      +...+++.|++.|++.|...+....++.|.+|++      +|+...
T Consensus        82 ~~i~~~l~~~~~----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~  133 (394)
T PRK03699         82 MILAVAGLMFSH----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRL  133 (394)
T ss_pred             HHHHHHHHHHcc----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHH
Confidence            988888887765                      7788899999999999998888889999999876      688888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-ccccchhhhhHHHHHHHHHHHHH
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQ-DNIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~-~~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      +..+...++|+.++|.+.+++. +..|||+.|.+.+++.++..++.
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        134 LFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            8888888889999998888765 46799999988777665544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.67  E-value=5.4e-15  Score=138.53  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=130.1

Q ss_pred             HhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021653           39 VGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPP  118 (309)
Q Consensus        39 ~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~  118 (309)
                      +.+...+| .+.+++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..+..++.++.++..++.        
T Consensus        26 ~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~--------   95 (393)
T PRK09705         26 TSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP--------   95 (393)
T ss_pred             hccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc--------
Confidence            44444444 56689999999999999999999999999999999996 999999999999999999999877        


Q ss_pred             CCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021653          119 PCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY  198 (309)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~  198 (309)
                                    +...++++|++.|+|.+...+..+.++.|.+| +      +|+...+.+..+.++|..+++.+.++
T Consensus        96 --------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~------~~~~~~g~~~~~~~~g~~~g~~~~~~  154 (393)
T PRK09705         96 --------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q------RTPLVMGLWSAALMGGGGLGAAITPW  154 (393)
T ss_pred             --------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c------cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence                          77788999999999999999999999999987 4      58999999999999999999999988


Q ss_pred             hhccc-cchhhhhHHHHHHHHHH
Q 021653          199 IQDNI-GWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       199 i~~~~-gw~~~f~i~~~~~~~~~  220 (309)
                      +.+.. +||..+.+.++..++.+
T Consensus       155 l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        155 LVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHH
Confidence            87765 89988766555444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.67  E-value=6.4e-15  Score=142.37  Aligned_cols=190  Identities=15%  Similarity=0.106  Sum_probs=137.9

Q ss_pred             CccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh-----cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHH
Q 021653           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITI   94 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i   94 (309)
                      +++.+.++.+..+...+....+...++. +..+     .+.+..+.+.+.+...++..++.+++|+++||+ |||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence            3444444444455554444333333333 3322     235566778899999999999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhh
Q 021653           95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  174 (309)
Q Consensus        95 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r  174 (309)
                      +.++..++.+++.++...                ....+...++++|++.|+|.|+..+..+.+++|.+|++      .|
T Consensus        92 ~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~R  149 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGS----------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WR  149 (502)
T ss_pred             HHHHHHHHHHHHHHccCc----------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hH
Confidence            999999998877765400                00113678999999999999999999999999999998      79


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhc-----------------------cccchhhhhHHHHHHHHHHH--HHHHhCcc
Q 021653          175 WKYFNWYYFVMGAAILVAVTVLVYIQD-----------------------NIGWGWGLGIPTFAMFLSII--AFLIGYPL  229 (309)
Q Consensus       175 ~~~~~~~~~~~~iG~~l~~~~~~~i~~-----------------------~~gw~~~f~i~~~~~~~~~~--~~~~~~~~  229 (309)
                      ++..++++....+|..+++.+...+..                       ..+||+.|.+.++..++..+  .+.+++|+
T Consensus       150 g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr  229 (502)
T TIGR00887       150 GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPR  229 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999888877654321                       24799999876665544433  34567777


Q ss_pred             eecc
Q 021653          230 YRNL  233 (309)
Q Consensus       230 ~~~~  233 (309)
                      |...
T Consensus       230 ~l~~  233 (502)
T TIGR00887       230 YTAD  233 (502)
T ss_pred             HHHH
Confidence            7543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.67  E-value=2.3e-15  Score=142.58  Aligned_cols=140  Identities=21%  Similarity=0.290  Sum_probs=120.8

Q ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhH
Q 021653           55 MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV  134 (309)
Q Consensus        55 ~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (309)
                      .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.....                   ...+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~  127 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAA-------------------FALSV  127 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhc-------------------cccch
Confidence            3388999999999999999999999999996 999999999999999988886654                   11245


Q ss_pred             HHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHhhccccchhhhhH
Q 021653          135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL---VYIQDNIGWGWGLGI  211 (309)
Q Consensus       135 ~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~---~~i~~~~gw~~~f~i  211 (309)
                      +.++++|++.|+|.|...+....+++|.+|++      +|+...++++.+.++|..+++.+.   ....+..+||+.|++
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~  201 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL  201 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence            67899999999999999999999999999987      799999999999999999999988   666677899999998


Q ss_pred             HHHHHHHHH
Q 021653          212 PTFAMFLSI  220 (309)
Q Consensus       212 ~~~~~~~~~  220 (309)
                      .++..++.+
T Consensus       202 ~~~~~~~~~  210 (481)
T TIGR00879       202 QLIPAGLLF  210 (481)
T ss_pred             HHHHHHHHH
Confidence            665554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11043 putative transporter; Provisional

Probab=99.67  E-value=1.1e-14  Score=136.50  Aligned_cols=162  Identities=16%  Similarity=0.207  Sum_probs=134.2

Q ss_pred             HHHHHHhhHHHHHHH--hHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh
Q 021653           34 EKLAVVGFNTNMISY--LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAI  111 (309)
Q Consensus        34 ~~~~~~~~~~~l~~y--l~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~  111 (309)
                      ....++.....+|.+  +++++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++...+. 
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE-   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc-
Confidence            333444444445544  6789999999999999999999999999999999996 999999999988888888777665 


Q ss_pred             cCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHH
Q 021653          112 LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILV  191 (309)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l  191 (309)
                                           +.+.++++|++.|+|.+...+....+..|.++++      ++++.++..+...++|..+
T Consensus        93 ---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  145 (401)
T PRK11043         93 ---------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPAL  145 (401)
T ss_pred             ---------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHH
Confidence                                 6788889999999998888877788899999876      5777788887788899999


Q ss_pred             HHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          192 AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       192 ~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      +|.+.+++.+..||+..|++.+++.++..+..+
T Consensus       146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043        146 APLLGAWLLNHFGWQAIFATLFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888776665554433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.67  E-value=1.1e-14  Score=140.02  Aligned_cols=175  Identities=9%  Similarity=0.064  Sum_probs=131.8

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH
Q 021653           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (309)
Q Consensus        19 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l   98 (309)
                      ++++.........++..+..+.+.. +..++.+++|++..+.+.+.+.+..+..++.+++|+++||+ |||+++..+.++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~  110 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAP-LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLML  110 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            3445555555555555555554443 34467789999999999998889999999999999999996 999999999988


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      ..++.++..++.                      +...+++.|++.|++.+... ....+++|.+|++      +|+...
T Consensus       111 ~~~~~~~~~~~~----------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~------~rg~a~  161 (476)
T PLN00028        111 TAPAVFCMSLVS----------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGK------IVGTAN  161 (476)
T ss_pred             HHHHHHHHHHhc----------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChh------heeHHH
Confidence            888888777765                      67778889999999988654 3456789999977      799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh----c-----cccchhhhhHHHHHHHHHHHHHH
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQ----D-----NIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~----~-----~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      +..+...++|+.+++.+.+.+.    +     ..|||+.|++.+++.++..++.+
T Consensus       162 g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~  216 (476)
T PLN00028        162 GIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL  216 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            9887777777777665544332    2     25899999998877665544433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.67  E-value=5.2e-15  Score=143.45  Aligned_cols=149  Identities=17%  Similarity=0.244  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHH
Q 021653           59 KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILY  138 (309)
Q Consensus        59 ~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (309)
                      +.+++.+.+.+++.+++++.|.++|++ |||++++++.+++.+|.++++.+.                      +..+++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~----------------------~~~~l~  146 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP----------------------SWYQLI  146 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh----------------------hHHHHH
Confidence            448999999999999999999999996 999999999999999999999998                      899999


Q ss_pred             HHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchhhhhHHHHHHH
Q 021653          139 VSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN-IGWGWGLGIPTFAMF  217 (309)
Q Consensus       139 ~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~-~gw~~~f~i~~~~~~  217 (309)
                      ++|++.|+|.|+...++|.|++|..|++      .||...+.+++..++|.+++..+.....+. .+||..+++..+..+
T Consensus       147 ~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~  220 (513)
T KOG0254|consen  147 VGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAV  220 (513)
T ss_pred             HHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999988      799999999999999999995554444433 589988776555444


Q ss_pred             HHH--HHHHHhCcceeccCCC
Q 021653          218 LSI--IAFLIGYPLYRNLDPA  236 (309)
Q Consensus       218 ~~~--~~~~~~~~~~~~~~~~  236 (309)
                      +..  +.+.+++|+|..++.+
T Consensus       221 ~~~~~~~~~pesp~~L~~~g~  241 (513)
T KOG0254|consen  221 ILALGMLFLPESPRWLIEKGR  241 (513)
T ss_pred             HHHHHHHhCCCChHHHHHcCC
Confidence            333  3444577887665433

>PRK10133 L-fucose transporter; Provisional

Probab=99.66  E-value=2e-14  Score=136.69  Aligned_cols=153  Identities=13%  Similarity=0.035  Sum_probs=120.3

Q ss_pred             CccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 021653           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~   99 (309)
                      .+..++.+..+.+...+........+| .+++++|.++.+.+.+.+.+.++..+++++.|+++||+ |||+++.++.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            344555555555555555544444444 55899999999999999999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      .++.+++.....                   ..+...++++|+++|+|.|...+...++++|..+++      ++....+
T Consensus       102 ~~~~~l~~~~~~-------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s  156 (438)
T PRK10133        102 ALGAALFWPAAE-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLN  156 (438)
T ss_pred             HHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHH
Confidence            999987643220                   117788999999999999999999999999875554      4555577


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 021653          180 WYYFVMGAAILVAVTVLVYI  199 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i  199 (309)
                      .++....+|..+++.+++.+
T Consensus       157 ~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        157 LAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888776544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.66  E-value=1.6e-14  Score=134.82  Aligned_cols=163  Identities=11%  Similarity=0.087  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q 021653           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTIS  109 (309)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~  109 (309)
                      ..+....+.......+| .+.+++|.+..+.+...+.+..+..++.++.|+++||+ |||+.+.++.++..++.+++..+
T Consensus        11 ~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~~   88 (392)
T PRK10473         11 LVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLA   88 (392)
T ss_pred             HHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHHh
Confidence            33334444333334444 45678999999999999999999999999999999996 99999999999998888887765


Q ss_pred             hhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHH
Q 021653          110 AILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAI  189 (309)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~  189 (309)
                      .                      +...++++|++.|++.+...+....++.|.+|++      +|++..++.+...++|.
T Consensus        89 ~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~  140 (392)
T PRK10473         89 E----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIP  140 (392)
T ss_pred             C----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHH
Confidence            5                      6677888999999999998888999999999977      79999999999999999


Q ss_pred             HHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          190 LVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       190 ~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      .++|.+.+.+.+..+|++.|++.+++.++..++
T Consensus       141 ~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473        141 VLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence            999999888888889999998887766555444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.66  E-value=2e-14  Score=134.45  Aligned_cols=174  Identities=14%  Similarity=0.028  Sum_probs=139.3

Q ss_pred             CccH-HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHH-----HHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHH
Q 021653           20 GMIT-MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK-----AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT   93 (309)
Q Consensus        20 ~~~~-~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~   93 (309)
                      .|+. ...++...++...++......++.|.+ ++|++..+     .+.+.+...+...++.++.|+++||+ |||+.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~   88 (408)
T PRK09874         11 NWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLL   88 (408)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHH
Confidence            3433 444556666777777767777888875 68888654     37778888999999999999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhh
Q 021653           94 IASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  173 (309)
Q Consensus        94 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~  173 (309)
                      .+.++..++.+++....                      +.+.+++.|++.|++.+ ..+....+..|.+|++      +
T Consensus        89 ~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~------~  139 (408)
T PRK09874         89 RSALGMGIVMVLMGLAQ----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRN------K  139 (408)
T ss_pred             HHHHHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh------h
Confidence            99988888888777655                      77888899999998765 4566677888888876      7


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          174 TWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       174 r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      |++..+.++...++|..+++.+.+.+.+..+|+..|++.+++.++..+..+
T Consensus       140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  190 (408)
T PRK09874        140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTL  190 (408)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999998888999999888877665554433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.66  E-value=1.1e-14  Score=134.97  Aligned_cols=154  Identities=14%  Similarity=0.165  Sum_probs=134.4

Q ss_pred             HHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 021653           42 NTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (309)
Q Consensus        42 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~  121 (309)
                      ...++.+. +++|+++.+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++....           
T Consensus        11 ~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~-----------   77 (377)
T PRK11102         11 LPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ-----------   77 (377)
T ss_pred             hccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc-----------
Confidence            34555555 57999999999999999999999999999999996 999999999999999988887766           


Q ss_pred             CccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021653          122 GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (309)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~  201 (309)
                                 +.+.+++.+++.|++.+...+....++.|.+|++      +|++..++++....+|..+++.+.+++.+
T Consensus        78 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  140 (377)
T PRK11102         78 -----------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLV  140 (377)
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       6778889999999999999999999999999876      79999999999999999999999999998


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHH
Q 021653          202 NIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       202 ~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      ..+|++.|++.+++.++..++...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102        141 WFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHH
Confidence            889999998877776665544433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.65  E-value=7.2e-15  Score=140.64  Aligned_cols=150  Identities=14%  Similarity=0.187  Sum_probs=121.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCccccccccch
Q 021653           54 HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAIL-PQLRPPPCEGEQVCQEANKG  132 (309)
Q Consensus        54 ~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  132 (309)
                      +.++.+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+..+++... ....           .++..
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~-----------~~~~~  118 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIG-----------PDNTG  118 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccccc-----------ccchh
Confidence            88999999999999999999999999999996 99999999999998888777654210 0000           00112


Q ss_pred             hHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--------cccc
Q 021653          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ--------DNIG  204 (309)
Q Consensus       133 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~--------~~~g  204 (309)
                      ....++++|++.|++.|+..+..+.+++|.+|++      +|+...+.+..+..+|..+++.+...+.        +..|
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  192 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG  192 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence            4567889999999999999999999999999987      7999999999999999998877655442        3568


Q ss_pred             chhhhhHHHHHHHHHHH
Q 021653          205 WGWGLGIPTFAMFLSII  221 (309)
Q Consensus       205 w~~~f~i~~~~~~~~~~  221 (309)
                      ||+.|++.++..++..+
T Consensus       193 Wr~~f~~~~~~~~~~~~  209 (479)
T PRK10077        193 WRYMFASEAIPALLFLM  209 (479)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            99999887766655443

>PRK09952 shikimate transporter; Provisional

Probab=99.65  E-value=1.1e-14  Score=138.55  Aligned_cols=177  Identities=10%  Similarity=0.073  Sum_probs=125.2

Q ss_pred             CccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhc--CCCHHHHHHHH-----HHHHHHHHhHHHHHHHHHHhccchHHHH
Q 021653           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQL--HMPLTKAANTL-----TNFGGTGSLTPLIGAFVADAYAGRFWTI   92 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~~~~~~-----~~~~~~~~~~~l~~G~laD~~~GR~~~i   92 (309)
                      +|+..+...+..+++.+.........+.+..+++  +.++.. +.+.     ++..++..+++++.|+++||+ |||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l   97 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence            3555555555566666655444434444555555  666653 3332     233455667888899999996 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhh
Q 021653           93 TIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  172 (309)
Q Consensus        93 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~  172 (309)
                      .++.+++.++.+++.++.+....              .......+++.|+++|+|.|+..+....+..|.+|++      
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------  157 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTI--------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN------  157 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHH--------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------
Confidence            99999999999888876511000              0001235788999999999999999999999999987      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhh--------ccccchhhhhHHHHHHHH
Q 021653          173 KTWKYFNWYYFVMGAAILVAVTVLVYIQ--------DNIGWGWGLGIPTFAMFL  218 (309)
Q Consensus       173 ~r~~~~~~~~~~~~iG~~l~~~~~~~i~--------~~~gw~~~f~i~~~~~~~  218 (309)
                      +|+...+..+.+..+|..++..+...+.        +.+|||..|++.++..++
T Consensus       158 ~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        158 KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            6888888888888888888876655543        257999999887765544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.65  E-value=1.6e-14  Score=133.35  Aligned_cols=168  Identities=11%  Similarity=0.056  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHH-HHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITI-ASIIYQIGMICLT  107 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i-~~~l~~~g~~~~~  107 (309)
                      +..++..++.......++.|+++++|.+..+.+.+.+.+.+...+..++.|.++||+ ||||.+++ +.++..++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence            445566666666778889999999999999999999999999999999999999996 99887665 4444455556655


Q ss_pred             HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhh--HHHHHHHHHH
Q 021653          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW--KYFNWYYFVM  185 (309)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~--~~~~~~~~~~  185 (309)
                      .+.                      +.+.+++.+++.+.+.+...+....+..|..|++      +|+  ...+......
T Consensus        83 ~~~----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  134 (375)
T TIGR00899        83 WNR----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRT------GREAVMFSSVMRAQI  134 (375)
T ss_pred             hcc----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc------chhhHHHHHHHHHHH
Confidence            544                      6677788888888777777777777777877654      333  3356777778


Q ss_pred             HHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       186 ~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      ++|..+++.+.+++.+..+|++.|++.+++.++..++.+.
T Consensus       135 ~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       135 SLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             hHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999988899999999988776655544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00897 2A0118 polyol permease family

Probab=99.64  E-value=4.9e-14  Score=132.38  Aligned_cols=171  Identities=13%  Similarity=0.151  Sum_probs=135.8

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH
Q 021653           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (309)
Q Consensus        19 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l   98 (309)
                      +-||+.....+..++..+..+....+++.++ +++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~   87 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL   87 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence            4456677777777777777666667788887 57899999999999999999999999999999996 999999999998


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      ..++.+++.....                  ...+...+++.|++.|+|.+...+.....+.+.+|++      +|++..
T Consensus        88 ~~~~~~~~~~~~~------------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~  143 (402)
T TIGR00897        88 WCVGHAAFIVFGL------------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAV  143 (402)
T ss_pred             HHHHHHHHHHHhc------------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHH
Confidence            8888765532210                  0115667788899999998887777777888888876      799999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHhhccccchhhhhHHHHH
Q 021653          179 NWYYFVMGAAI-LVAVTVLVYIQDNIGWGWGLGIPTFA  215 (309)
Q Consensus       179 ~~~~~~~~iG~-~l~~~~~~~i~~~~gw~~~f~i~~~~  215 (309)
                      ++++.+.++|. .+++.+.+++.+..||+..++.....
T Consensus       144 g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       144 GWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            99999999996 57888888888888876655544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.9e-15  Score=138.26  Aligned_cols=170  Identities=14%  Similarity=0.092  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHH---HHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNM---ISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l---~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      +-++...++...++|.+.-|+   .+++.++.++|..+.+.+.+.+.+++.++-.+.|.++||. +.|..+-++.++..+
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai  106 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence            334455666677777776654   4788889999999999999999999999999999999996 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      ..+++.++.                      +...+.+..++.|+..|.-.|+....++.+++.+      +||+..+.+
T Consensus       107 ~nil~Gfs~----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~~~siW  158 (448)
T COG2271         107 VNILFGFSP----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGTWWSIW  158 (448)
T ss_pred             HHHHHhhhh----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCceEEEe
Confidence            999999887                      8888999999999999999999999999999988      799999999


Q ss_pred             HHHHHHHHHHHHHHH--HHhhccccchhhhhHHHHHHHHHHHHH
Q 021653          182 YFVMGAAILVAVTVL--VYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~--~~i~~~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      +.+.|+|+.+.+.+.  +++..+.+||.+|++++++.++..++.
T Consensus       159 n~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~  202 (448)
T COG2271         159 NTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALIL  202 (448)
T ss_pred             hhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence            999999999999998  899988999999999999876554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.64  E-value=4.2e-14  Score=131.75  Aligned_cols=158  Identities=14%  Similarity=0.110  Sum_probs=134.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      |.++.++...++..+....+...+|.|+. ++|.|..+.+.+.+.+.++..+++++.|+++||+ |||+++.++.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~   83 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            45677777787888777777788887775 7899999999999999999999999999999996 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +.++...+.                      +.+.++++|++.|++.+...+.......|..+++      +|++.++++
T Consensus        84 ~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  135 (381)
T PRK03633         84 GCAGLGLMV----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAY  135 (381)
T ss_pred             HHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHH
Confidence            888877766                      7888999999999999998888777777877765      689999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhh
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWGWGL  209 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~~~f  209 (309)
                      ..+.++|..+++.+.+.+.+...|...+
T Consensus       136 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~  163 (381)
T PRK03633        136 MMVYYLGTVLGQLLVSKVSTELMSVLPW  163 (381)
T ss_pred             HHHHHHHHHHHHHHHhcccccccchHHH
Confidence            9999999999999999887654444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.63  E-value=2.7e-14  Score=129.74  Aligned_cols=166  Identities=17%  Similarity=0.319  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~  106 (309)
                      +....++..+..+.....++.|. +++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~   81 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLL   81 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHH
Confidence            34556666776666666677666 56799999999999999999999999999999996 99999999999999998888


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHH
Q 021653          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (309)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~  186 (309)
                      ....                      +.+.+++++++.|++.+...+....+..|.+|++      +|++.+++.+...+
T Consensus        82 ~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  133 (352)
T cd06174          82 AFAS----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFG  133 (352)
T ss_pred             HHhc----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHH
Confidence            8765                      7788999999999999999999999999999986      79999999999999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       187 iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      +|..+++.+.+.+.+..+|+..+++.++..++..+.
T Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         134 LGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL  169 (352)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999889999998877766555433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.63  E-value=2.2e-14  Score=138.25  Aligned_cols=176  Identities=16%  Similarity=0.129  Sum_probs=125.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCH--HH--HHH--HHHHHHHHHHhHHHHHHHHHHhccchHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPL--TK--AAN--TLTNFGGTGSLTPLIGAFVADAYAGRFWTITI   94 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~--~~~--~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i   94 (309)
                      ++......+..+++.+.+. +......++.++++.+.  ..  .+.  +.++..++..+++++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            3444444455666665544 34445567777775332  21  111  24667788889999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhh
Q 021653           95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  174 (309)
Q Consensus        95 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r  174 (309)
                      +.+++.++.++++++.+...+              .-....++++.|+++|+|.|+..+....+++|.+|++      +|
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~--------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~R  152 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATI--------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KR  152 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHH--------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CC
Confidence            999999999998876610000              0001124789999999999999999999999999987      68


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhh--------ccccchhhhhHHHHHHHH
Q 021653          175 WKYFNWYYFVMGAAILVAVTVLVYIQ--------DNIGWGWGLGIPTFAMFL  218 (309)
Q Consensus       175 ~~~~~~~~~~~~iG~~l~~~~~~~i~--------~~~gw~~~f~i~~~~~~~  218 (309)
                      +...++...+..+|..+++.+...+.        ..+|||+.|++.++..++
T Consensus       153 g~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        153 GFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            99888888887888877765543332        367999999987654443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.63  E-value=3.6e-15  Score=142.79  Aligned_cols=153  Identities=10%  Similarity=0.025  Sum_probs=125.3

Q ss_pred             HHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 021653           46 ISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV  125 (309)
Q Consensus        46 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  125 (309)
                      .+.+.+++|++..+.+++.+.+..++.++.+++|+++||+ |||+++.++.++..++..+.....               
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------  115 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASL---------------  115 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHH---------------
Confidence            4567789999999999999999999999999999999996 999999988888777766665431               


Q ss_pred             cccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Q 021653          126 CQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI--  203 (309)
Q Consensus       126 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~--  203 (309)
                      |.  ...+.+.+++.|++.|++.|...+....+++|++|++      +|++..+++..+.++|..+++.+..++.+..  
T Consensus       116 ~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~  187 (467)
T PRK09556        116 GS--GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFD  187 (467)
T ss_pred             hc--ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhcc
Confidence            00  0127888999999999999999999999999999987      7999999999999999999988877665542  


Q ss_pred             -cchhhhhHHHHHHHHHHHH
Q 021653          204 -GWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       204 -gw~~~f~i~~~~~~~~~~~  222 (309)
                       +|+..|.+.+++.++..++
T Consensus       188 ~~~~~~f~~~g~~~~~~~i~  207 (467)
T PRK09556        188 GHVIGMFIFPSIIALIIGFI  207 (467)
T ss_pred             CcchhHHHHHHHHHHHHHHH
Confidence             5888887776665544333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.63  E-value=4.8e-15  Score=136.35  Aligned_cols=150  Identities=14%  Similarity=0.167  Sum_probs=131.9

Q ss_pred             HHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 021653           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (309)
Q Consensus        45 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  124 (309)
                      ..+++.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..++.+++..+.              
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--------------   81 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST--------------   81 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh--------------
Confidence            34577889999999999999999999999999999999996 999999999999999998888776              


Q ss_pred             ccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHhhccc
Q 021653          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV-TVLVYIQDNI  203 (309)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~-~~~~~i~~~~  203 (309)
                              +.+.++++|++.|++.+...+...++++|.+|++      +|++..++.+.+.++|..+++ .+...+.+..
T Consensus        82 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  147 (379)
T TIGR00881        82 --------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY  147 (379)
T ss_pred             --------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcC
Confidence                    7888999999999999999999999999999987      699999999999999999999 5666777788


Q ss_pred             cchhhhhHHHHHHHHHHHHH
Q 021653          204 GWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       204 gw~~~f~i~~~~~~~~~~~~  223 (309)
                      +|++.|++.+++.++..++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~  167 (379)
T TIGR00881       148 SWHWVFIVPGIIAIIVSLIC  167 (379)
T ss_pred             CchhHHHHHHHHHHHHHHHH
Confidence            99999988777665544333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.63  E-value=6.8e-14  Score=131.95  Aligned_cols=173  Identities=12%  Similarity=0.041  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      .+.+....++..+.. ++...+.+.+++++|++..+.+.+.+.+.++..+++++.|++.||+ |||+++.++.+++.+|.
T Consensus         5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            333444444444433 4444555677899999999999999999999999999999999996 99999999999999998


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      +++..+..                   ..+.+.+++++++.|+|.|...+...+++.+..|++      ++++..+..+.
T Consensus        83 ~l~~~~~~-------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  137 (410)
T TIGR00885        83 FLFWPAAE-------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQS  137 (410)
T ss_pred             HHHHHHHh-------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHH
Confidence            87655431                   126788899999999999999999999999988876      57777888888


Q ss_pred             HHHHHHHHHHHHHHHhhc--------------------------cccchhhhhHHHHHHHHHHHHH
Q 021653          184 VMGAAILVAVTVLVYIQD--------------------------NIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~--------------------------~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      ..++|..+++.+.+.+..                          ..+||++|++.+++.++..+++
T Consensus       138 ~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       138 FNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999888776532                          2369999988777665544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.62  E-value=8.1e-14  Score=130.66  Aligned_cols=162  Identities=17%  Similarity=0.116  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      .+.++...++..++.......++. +.+++|.+..+.+++.+.+.+...++.+++|+++||+ |||++++++.++..++.
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~   82 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC   82 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence            344555666666654444444444 3578999999999999999999999999999999996 99999999999998887


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      +.+....                      +.   ++.|+++|++.+...|...+++.|.+|++      +|++..++...
T Consensus        83 ~~~~~~~----------------------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~  131 (393)
T PRK11195         83 LLMLFGI----------------------HP---LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEG  131 (393)
T ss_pred             HHHHHHH----------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHH
Confidence            7766544                      32   67889999999999999999999999987      79999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Q 021653          184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~  219 (309)
                      ..++|..+||.+++++.+. .|+..+.+.+.+.+++
T Consensus       132 ~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        132 STIAAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999998774 3776666665544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.62  E-value=2e-14  Score=137.42  Aligned_cols=145  Identities=10%  Similarity=0.124  Sum_probs=126.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 021653           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (309)
Q Consensus        52 ~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (309)
                      +++++..+.+.+.+.+..+..++.+++|+++||+ |||+++.++.++..++.++...+.                    .
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------------~  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAA--------------------G  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHH--------------------H
Confidence            6889999999999999999999999999999996 999999999998888877765443                    0


Q ss_pred             hhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchhhhh
Q 021653          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN-IGWGWGLG  210 (309)
Q Consensus       132 ~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~-~gw~~~f~  210 (309)
                      .+...+++.|++.|++.+...+....+++|.+|++      +|++..++++.+.++|..+++.+.+++.+. .||+..|+
T Consensus       129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~  202 (465)
T TIGR00894       129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFY  202 (465)
T ss_pred             cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehh
Confidence            14567889999999999999999999999999987      799999999999999999999999999888 49999999


Q ss_pred             HHHHHHHHHHHHH
Q 021653          211 IPTFAMFLSIIAF  223 (309)
Q Consensus       211 i~~~~~~~~~~~~  223 (309)
                      +.++..++..++.
T Consensus       203 i~~~~~~~~~~~~  215 (465)
T TIGR00894       203 VFGIVGCAWSLLW  215 (465)
T ss_pred             hhhHHHHHHHHHH
Confidence            9887665554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.61  E-value=2.3e-14  Score=135.12  Aligned_cols=170  Identities=14%  Similarity=0.171  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~  108 (309)
                      ...++..+........+|.+. ++++.+..+.+.+.+...++..+++++.|+++||+ |||+.+.++.++..++.+++..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~~  101 (417)
T PRK10489         24 IARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLAL  101 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHHH
Confidence            334455555444444555554 56788999999999999999999999999999996 9999999988877777666553


Q ss_pred             HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHH
Q 021653          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (309)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG  188 (309)
                      .....                 ..+.+.+++.+++.|++.+...+....++.|..|++      +|++..++.+...++|
T Consensus       102 ~~~~~-----------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g  158 (417)
T PRK10489        102 NAFLP-----------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLG  158 (417)
T ss_pred             HHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHH
Confidence            22110                 115677888899999998888888888899998876      6889999999999999


Q ss_pred             HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Q 021653          189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       189 ~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      ..+++.+++.+.+..+|++.|++.++..++..++.
T Consensus       159 ~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T PRK10489        159 SVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL  193 (417)
T ss_pred             HHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999888899999988777666554443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.59  E-value=3e-14  Score=134.91  Aligned_cols=157  Identities=14%  Similarity=0.170  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHH
Q 021653           60 AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYV  139 (309)
Q Consensus        60 ~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (309)
                      .+.+++++.++..+|+.++|+++||+ |||.+++++.++.+++.+++.++...                   ....++.+
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------~~~e~li~  121 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------PSFEMLIL  121 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------hhHHHHHH
Confidence            46678899999999999999999997 99999999999999998888877622                   26788999


Q ss_pred             HHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhh-ccccchhhhhHHHHHHH
Q 021653          140 SLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL-VYIQ-DNIGWGWGLGIPTFAMF  217 (309)
Q Consensus       140 ~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~-~~i~-~~~gw~~~f~i~~~~~~  217 (309)
                      +|++.|+..|......+.|+.|..|.+      .||........+.++|.+++..++ ..+- +...|.+.+....+..+
T Consensus       122 GR~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~  195 (485)
T KOG0569|consen  122 GRLIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPAL  195 (485)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHH
Confidence            999999999999999999999999998      799999999999999999996553 3443 44569988888777655


Q ss_pred             HHH--HHHHHhCcceecc-CCCCChhHH
Q 021653          218 LSI--IAFLIGYPLYRNL-DPAGSPFTR  242 (309)
Q Consensus       218 ~~~--~~~~~~~~~~~~~-~~~~~~~~~  242 (309)
                      +.+  +.+.+++|+|.-- +.+.+++++
T Consensus       196 ~~l~~l~~~PESPk~Ll~~k~~~~~A~~  223 (485)
T KOG0569|consen  196 LQLALLPFLPESPKYLLIKKGDEEEARK  223 (485)
T ss_pred             HHHHHHhcCCCCcchHHHHcCCHHHHHH
Confidence            544  4566788988644 444444443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.59  E-value=2.8e-13  Score=126.86  Aligned_cols=174  Identities=14%  Similarity=0.100  Sum_probs=128.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      ++..+..+....+....++....++|.|+++++|++..+++.+.+...+...++.+++|+++||+ |||+.+..+.+...
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~  293 (393)
T PRK15011        215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGV  293 (393)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence            33333333333333344445566789999999999999998888877777788899999999996 99998877765555


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      +....+....                      +...+.+.+++.+++.|...+..+.+..|.+|+       ++++..++
T Consensus       294 ~~~~~~~~~~----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-------~~g~~~~~  344 (393)
T PRK15011        294 CFYAGMLMAH----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-------QAGSATTL  344 (393)
T ss_pred             HHHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CcchHHHH
Confidence            4433333222                      445556667777777776666677778898885       47888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      ++...++|..+++.+.+.+.+..||+..|++..++.++++++.+
T Consensus       345 ~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        345 YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999988999999887777776665544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.59  E-value=9.2e-14  Score=132.57  Aligned_cols=153  Identities=14%  Similarity=0.105  Sum_probs=121.5

Q ss_pred             HHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 021653           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (309)
Q Consensus        44 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  123 (309)
                      ...+|+.++ |++..+.+.+.+.+.++..++++++|+++||+ |||++++++.++..++.+++.+...            
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~------------  115 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW------------  115 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc------------
Confidence            344577777 99999999999999999999999999999996 9999999999988888877776430            


Q ss_pred             cccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Q 021653          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL-VAVTVLVYIQDN  202 (309)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~-l~~~~~~~i~~~  202 (309)
                            ...+...+++.+++.|++.|...+.......|++|++      +|++..++++.+.++|+. .++.....+...
T Consensus       116 ------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        116 ------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             ------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence                  0115667788899999999988888888889999876      799999999999998864 455543333334


Q ss_pred             ccchhhhhHHHHHHHHHHHH
Q 021653          203 IGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       203 ~gw~~~f~i~~~~~~~~~~~  222 (309)
                      .+||+.|++.+++.++..++
T Consensus       184 ~gw~~~f~i~~~~~~~~~~l  203 (452)
T PRK11273        184 NDWHAALYMPAFAAILVALF  203 (452)
T ss_pred             ccHHHHHHHHHHHHHHHHHH
Confidence            59999999877765554333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.59  E-value=1.6e-14  Score=143.00  Aligned_cols=196  Identities=14%  Similarity=0.173  Sum_probs=148.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      ++.+.+.+....+......+........++++++++..+.+.+.+.+.++..++.++.|+++||+ ||++.+.++++++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~  109 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence            44444444444455555555666666778889999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHHHhhcCCC----------------CCCCCCCc-----------ccccccc--chhHHHHHHHHHHHHHhhhcc
Q 021653          101 IGMICLTISAILPQL----------------RPPPCEGE-----------QVCQEAN--KGQVAILYVSLLLAALGSGGI  151 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~----------------~~~~~~~~-----------~~~~~~~--~~~~~~~~~~~~l~gig~g~~  151 (309)
                      +|.++.++..++..-                ....|...           ..|...+  +....+++++|+++|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            999998876532110                01123110           0222222  124567889999999999999


Q ss_pred             hhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------cchhhh
Q 021653          152 RPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI----------------------GWGWGL  209 (309)
Q Consensus       152 ~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~----------------------gw~~~f  209 (309)
                      .+...+++.|.+|++      +|+...++++.+..+|..+|+++++++.+.+                      +|+.+|
T Consensus       190 ~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~F  263 (633)
T TIGR00805       190 FPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGF  263 (633)
T ss_pred             hhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHH
Confidence            999999999999987      7999999999999999999999988876532                      277778


Q ss_pred             hHHHHHHHHHHHHH
Q 021653          210 GIPTFAMFLSIIAF  223 (309)
Q Consensus       210 ~i~~~~~~~~~~~~  223 (309)
                      ++.+++.++..+.+
T Consensus       264 li~g~l~~l~~v~l  277 (633)
T TIGR00805       264 LICGGVALLTSIPF  277 (633)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777665554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00898 2A0119 cation transport protein

Probab=99.59  E-value=4.4e-14  Score=136.32  Aligned_cols=152  Identities=16%  Similarity=0.236  Sum_probs=128.6

Q ss_pred             HhHHhcCCC---HHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 021653           48 YLTTQLHMP---LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (309)
Q Consensus        48 yl~~~~~~s---~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  124 (309)
                      .+.++++++   ..+.+...+++.++..+++++.|+++||+ |||++++++.++..++.++..++.              
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~--------------  178 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP--------------  178 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence            456788998   88999999999999999999999999996 999999999999999888887766              


Q ss_pred             ccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 021653          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG  204 (309)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~g  204 (309)
                              +.+.+++.|++.|++.++..+....++.|.+|++      +|+...+.+..+..+|.++++.+...+.+   
T Consensus       179 --------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---  241 (505)
T TIGR00898       179 --------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---  241 (505)
T ss_pred             --------cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---
Confidence                    7888999999999999999999999999999987      68888888888899999998888766654   


Q ss_pred             chhhhhHHHHHHHHHHHHHH--HhCccee
Q 021653          205 WGWGLGIPTFAMFLSIIAFL--IGYPLYR  231 (309)
Q Consensus       205 w~~~f~i~~~~~~~~~~~~~--~~~~~~~  231 (309)
                      ||+.|++.++..++..+..+  +++|++.
T Consensus       242 wr~~~~~~~i~~~~~~~~~~~~~esp~~l  270 (505)
T TIGR00898       242 WRWLQLAVSLPTFLFFLLSWFVPESPRWL  270 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence            99999887776655544332  3444444

>PRK15075 citrate-proton symporter; Provisional

Probab=99.59  E-value=1.3e-13  Score=130.90  Aligned_cols=173  Identities=14%  Similarity=0.101  Sum_probs=121.7

Q ss_pred             CccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHH-HHHHHH-----HHHhHHHHHHHHHHhccchHHHHH
Q 021653           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANT-LTNFGG-----TGSLTPLIGAFVADAYAGRFWTIT   93 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~-~~~~~~-----~~~~~~l~~G~laD~~~GR~~~i~   93 (309)
                      +|++..-+.+..+++.+....+. .+.+.+.++++.+..+.+.. .+....     ...+++++.|+++||+ |||+.++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~   90 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLI   90 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHH
Confidence            35554445555555555554444 44457778898877664433 222222     2236788999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhh
Q 021653           94 IASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  173 (309)
Q Consensus        94 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~  173 (309)
                      .+.+++.++.+++.++.....+              .......++++|++.|++.|...+....+.+|.+|++      +
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~  150 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATI--------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG------R  150 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHH--------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc------c
Confidence            9999999999888876510000              0000125688999999999999998999999999987      7


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHh--------hccccchhhhhHHHH
Q 021653          174 TWKYFNWYYFVMGAAILVAVTVLVYI--------QDNIGWGWGLGIPTF  214 (309)
Q Consensus       174 r~~~~~~~~~~~~iG~~l~~~~~~~i--------~~~~gw~~~f~i~~~  214 (309)
                      |++..+++....++|..+++.+++.+        .+..|||+.|++..+
T Consensus       151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            99999988888777777776665554        356799999987544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.58  E-value=1.2e-13  Score=131.87  Aligned_cols=148  Identities=12%  Similarity=0.070  Sum_probs=124.6

Q ss_pred             HHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc
Q 021653           47 SYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVC  126 (309)
Q Consensus        47 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  126 (309)
                      ..+.+++|++..+.+.+.+.+..+..++.+++|+++||+ |||++++.+.++..++.+++..+.                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            445679999999999999999999999999999999996 999999999999988888877765                


Q ss_pred             ccccchhHHHHHH-HHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 021653          127 QEANKGQVAILYV-SLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGW  205 (309)
Q Consensus       127 ~~~~~~~~~~~~~-~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw  205 (309)
                            +.+.+++ .|++.|++.|...+....++.+.++ +      +|++..++++.+.++|..+++.+.+++.+..||
T Consensus       106 ------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw  172 (455)
T TIGR00892       106 ------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-R------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGW  172 (455)
T ss_pred             ------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-h------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence                  5566654 4688899998766666677788885 3      699999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHH
Q 021653          206 GWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       206 ~~~f~i~~~~~~~~~~~~~  224 (309)
                      |++|++.+++.++..+..+
T Consensus       173 r~~f~~~~~~~~~~~v~~~  191 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGA  191 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999998887765554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.58  E-value=2.8e-13  Score=128.47  Aligned_cols=179  Identities=13%  Similarity=-0.003  Sum_probs=128.6

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHH-hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      |++++..+..++.....+. .+.+...+.+ ++|++..+.+++.++..++..++.++.|++.||+ |.|+++.++.++..
T Consensus        34 r~l~~s~~~f~~~F~~w~~-~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWML-FSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            5555544444444444443 4444555544 8999999999999999999999999999999997 99999999999998


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      +.++++.++...                 ...++..+++.|++.|++ |...+.....++++||++      +||+..++
T Consensus       112 i~~~~~~~a~~~-----------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi  167 (462)
T PRK15034        112 IPCVWLGIAVQN-----------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGI  167 (462)
T ss_pred             HHHHHHHHHHcc-----------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHH
Confidence            888888765200                 011788999999999998 667888899999999987      79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-----c-------------cccchhhhhHHHHHHHHHHHHHHHh
Q 021653          181 YYFVMGAAILVAVTVLVYIQ-----D-------------NIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~-----~-------------~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      +....++|..+++.+...+.     .             ..+|+...++..++.++..++.++.
T Consensus       168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            87667777766554433221     2             2346666656555555554444443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.58  E-value=2.9e-13  Score=127.19  Aligned_cols=171  Identities=7%  Similarity=0.016  Sum_probs=139.4

Q ss_pred             CCccHHHHHH-HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHH-HHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHH
Q 021653           19 GGMITMPFIF-SNEVCEKLAVVGFNTNMISYLTTQLHMPLTK-AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (309)
Q Consensus        19 ~~~~~~~~i~-~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~   96 (309)
                      +.|+...+++ +-.++..+=.  ..+....|+.+++|++..+ .+.+.+.+..++.++.+++|+++||+ |.|+++.++.
T Consensus        23 ~~W~~~~~~lC~fGF~~e~R~--n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~   99 (511)
T TIGR00806        23 KSWRVLVLYLCFYGFMAQFRP--GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQA   99 (511)
T ss_pred             cchhHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHH
Confidence            4576555433 3333333321  2344567899999999999 99999999999999999999999996 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhH
Q 021653           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (309)
Q Consensus        97 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  176 (309)
                      +...+..+++.++.                      +...+.+.|++.|++.|+.. ....+++.++|++      +|++
T Consensus       100 l~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~r  150 (511)
T TIGR00806       100 LSFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQR  150 (511)
T ss_pred             HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHH
Confidence            99999999999887                      78889999999999999999 9999999999987      7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhh---HHHHHHHHHHHH
Q 021653          177 YFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLG---IPTFAMFLSIIA  222 (309)
Q Consensus       177 ~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~---i~~~~~~~~~~~  222 (309)
                      ..+++..+..+|.++++.+++++ ..+||+.-+.   +......+++++
T Consensus       151 atsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~  198 (511)
T TIGR00806       151 AAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999884 4679986543   334444444433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.57  E-value=6.1e-13  Score=124.56  Aligned_cols=174  Identities=10%  Similarity=0.091  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHH-HHHhHHHHHHHHHHhccchHHHHH-HHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAGRFWTIT-IASIIYQ  100 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~l~~G~laD~~~GR~~~i~-i~~~l~~  100 (309)
                      ..+..++..++.++....+...++.|+.+++|.+.++.+.+.+.... +..++++++|+ +||+ ||||.++ .+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~   93 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV   93 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence            34555566778888877788889999999999999999998776545 55556666666 9997 9998755 4445444


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHH-HHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL-LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      ++..+..++.                      +.+.+++.+ ++.+.+ +...+....+..|..+++.    +..+.+.+
T Consensus        94 ~~~~~~~~~~----------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~  146 (393)
T PRK15011         94 LACTLFAWNR----------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG----REAVMFSS  146 (393)
T ss_pred             HHHHHHHHhh----------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc----chHHHHHH
Confidence            5555555544                      555555444 444443 4556666777777655431    01244456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      +.+.+.++|..++|.+++++.+..|||..|++.++..++..++.+.
T Consensus       147 ~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        147 FLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            7888899999999999999998899999999888766655544443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.56  E-value=2.8e-13  Score=129.79  Aligned_cols=175  Identities=13%  Similarity=0.002  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+.+.+..++....+++...++|.|+++++|++..+++.......++..++.+++|+++||+ |||+.+.+...+..++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence            456666666677777778888999999999999999999999989999999999999999996 9998776655444433


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      ..+.....                    ..+....++.+++.|++..+..........|.+|++      .+++..+..+
T Consensus       338 ~~~~~~~~--------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~------~~g~a~gi~~  391 (467)
T PRK09556        338 FTLGVYQH--------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKK------AIGVANGIKG  391 (467)
T ss_pred             HHHHHHHh--------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchh------hHHHHHHHHH
Confidence            32222211                    013444556666666544343333345667999987      7999999999


Q ss_pred             HHHHH-HHHHHHHHHHHhhc------------cccchhhhhHHHHHHHHHHHHHH
Q 021653          183 FVMGA-AILVAVTVLVYIQD------------NIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       183 ~~~~i-G~~l~~~~~~~i~~------------~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      ...++ |+.++|.+.|++.+            ..+|+..|++..++.+++.+..+
T Consensus       392 ~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        392 TFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            88886 77899999999988            56899999888777777655544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=1.2e-13  Score=126.57  Aligned_cols=179  Identities=17%  Similarity=0.171  Sum_probs=143.4

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-chHHHHH-HHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA-GRFWTIT-IASIIY   99 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~-GR~~~i~-i~~~l~   99 (309)
                      |.+|++.+..++..+.-|++..+.|.|+.+..|+|..+++...+.+..+...+++++||+|||++ |||...- ++++..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999998 7775443 333333


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      .++.+....+.                    +.+..+..+..+++|+-.-+..-.+-....|..|++      .-|+..+
T Consensus       332 ~~~~~~~w~~~--------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~------AaGtA~G  385 (448)
T COG2271         332 TASLVLYWLAP--------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKK------AAGTATG  385 (448)
T ss_pred             HHHHHHHHcCC--------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHh------hccchhc
Confidence            34444333332                    225677777778888877777777777778988877      6788888


Q ss_pred             HHHHHHHH-HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHh
Q 021653          180 WYYFVMGA-AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       180 ~~~~~~~i-G~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      ...+...+ |+.++....+++.|.+||...|.+..+..+++.+++.+.
T Consensus       386 f~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         386 FVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             hhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            87777777 888898999999998999999988777777666555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.56  E-value=1.1e-13  Score=131.49  Aligned_cols=154  Identities=12%  Similarity=0.091  Sum_probs=124.9

Q ss_pred             HHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 021653           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (309)
Q Consensus        45 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  124 (309)
                      ..+++++ +|++..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++.......            
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------  114 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA------------  114 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc------------
Confidence            3456665 599999999999999999999999999999996 99999999988888887766543200            


Q ss_pred             ccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhccc
Q 021653          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY-IQDNI  203 (309)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~-i~~~~  203 (309)
                            ..+...+++.|++.|++.|...+.....+.|.+|++      +|++..++++.+.++|+.+++.+.+. +....
T Consensus       115 ------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       115 ------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             ------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence                  014566778899999999998888889999999987      79999999999999999998877665 44457


Q ss_pred             cchhhhhHHHHHHHHHHHHHH
Q 021653          204 GWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       204 gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      +||..|++.+++.++..++.+
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~~  203 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFAF  203 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            999999998777666544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.55  E-value=5.7e-13  Score=124.74  Aligned_cols=178  Identities=7%  Similarity=-0.095  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..|.+....++...+...+...++.|+++++|++..+.+.+.+...++..+++++.|+++||+ |||+.++.+.....++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            355566667777777777788999999999999999999999999999999999999999996 9999998877666554


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      ..........+..              .......+.+++++.+++.+...+....+..|..+        +++..++...
T Consensus        82 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~  139 (396)
T TIGR00882        82 FAPFFIYVFGPLL--------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--------NSNFEYGKAR  139 (396)
T ss_pred             HHHHHHHHhhhHH--------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--------hcccccchhh
Confidence            4332211100000              00023345666788888888888887777666422        2334556666


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      ...++|..+++.+++.+.+ .+|+..|++.+++.++..++.+
T Consensus       140 ~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       140 MFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             hhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence            7788999999999888765 5999999888776665544433

>PRK03699 putative transporter; Provisional

Probab=99.55  E-value=6.7e-13  Score=124.27  Aligned_cols=170  Identities=16%  Similarity=0.128  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+.+.+..++.....+++..++|.|+++.+|++..+++.+.+.+.++..++.+++|+++||+ |||+.+.....+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence            344444555555666677888999999999999999999999999999999999999999996 9999888777665555


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      ..+.....                      +...+.+..++.|++.++..+....+..|..|.+       ++...++.+
T Consensus       285 ~~~~~~~~----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~  335 (394)
T PRK03699        285 MYLFVNTD----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFIL  335 (394)
T ss_pred             HHHHHHcC----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHH
Confidence            44443322                      3334455566778888877788777888877654       344567777


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      ...++|..++|.+.+++.+..|++..+++.+++.+++.++
T Consensus       336 ~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        336 TCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            7889999999999999999999999988877776665443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.54  E-value=1.3e-13  Score=133.82  Aligned_cols=156  Identities=15%  Similarity=0.048  Sum_probs=133.9

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 021653           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (309)
Q Consensus        51 ~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (309)
                      +.++.+........+++.++..+|+++.|.++|+ +|||++++++.++.+++.++.+++.                    
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~--------------------  169 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP--------------------  169 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence            5667788888999999999999999999999999 5999999999999999999999888                    


Q ss_pred             chhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhh
Q 021653          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLG  210 (309)
Q Consensus       131 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~  210 (309)
                        +...+.+.|++.|++.++...+...+.+|.++++      .|+...++ ......|+.+++.+++++..  +||+.++
T Consensus       170 --~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  170 --NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             --cHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence              8999999999999999999999999999999998      68888888 77777788888888888877  8999999


Q ss_pred             HHHHHHHHHHHH-HHH-hCcceeccCCCCC
Q 021653          211 IPTFAMFLSIIA-FLI-GYPLYRNLDPAGS  238 (309)
Q Consensus       211 i~~~~~~~~~~~-~~~-~~~~~~~~~~~~~  238 (309)
                      +..+..++.++. ++. ++|||+..+.+.+
T Consensus       239 ~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~  268 (521)
T KOG0255|consen  239 IISIPSGLFLLLWFLPPESPRWLLSKGRID  268 (521)
T ss_pred             HHHHHHHHHHHHHHccCcChHHHHHcCchH
Confidence            877776655444 333 6777776555443

>TIGR00896 CynX cyanate transporter

Probab=99.54  E-value=2e-13  Score=125.73  Aligned_cols=147  Identities=12%  Similarity=0.174  Sum_probs=121.8

Q ss_pred             HHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021653           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (309)
Q Consensus        43 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~  122 (309)
                      ..+.+.+.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.. ...            
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~------------   85 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP------------   85 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc------------
Confidence            3344567789999999999999999999999999999999996 99999999998887777665 333            


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021653          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (309)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~  202 (309)
                                +...+++.|++.|+|.+...+..+....|.+++       +|++..+.++.+.++|..+++.+.+.+.+.
T Consensus        86 ----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896        86 ----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      567788999999999999888888888888863       589999999999999999999988888765


Q ss_pred             c--cchhhhhHHHHHHHHHH
Q 021653          203 I--GWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       203 ~--gw~~~f~i~~~~~~~~~  220 (309)
                      .  +||..|.+.+++.++..
T Consensus       149 ~~~~w~~~f~~~~~~~~~~~  168 (355)
T TIGR00896       149 SGGHWQQALAWWALPALLAL  168 (355)
T ss_pred             hhhhHHHHHHHHHHHHHHHH
Confidence            4  38988877665544443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.54  E-value=8.5e-13  Score=123.47  Aligned_cols=167  Identities=12%  Similarity=0.098  Sum_probs=128.9

Q ss_pred             HHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 021653           33 CEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAIL  112 (309)
Q Consensus        33 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~  112 (309)
                      +..+.+.....+++.|+.+ .|++  +.+...+.+.++..++.++.|+++||+ |||+.+.++.++..++.+++....  
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--  300 (399)
T PRK05122        227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP--  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc--
Confidence            3444555566777888753 4553  344556667777888899999999996 999999888888777776666544  


Q ss_pred             CCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHH
Q 021653          113 PQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA  192 (309)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~  192 (309)
                                          +...+++..++.|+|.+...+.......|.+|++      +|++..++++...++|..++
T Consensus       301 --------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~  354 (399)
T PRK05122        301 --------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGIT  354 (399)
T ss_pred             --------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHH
Confidence                                4556677788899999988887777788888766      79999999999999999999


Q ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCccee
Q 021653          193 VTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYR  231 (309)
Q Consensus       193 ~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~  231 (309)
                      +.+.+++.+..||+..|++.+++.+++++..+...++.+
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        355 GPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999899999999888877777665554444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.53  E-value=1.6e-12  Score=118.08  Aligned_cols=168  Identities=20%  Similarity=0.254  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-TITIASIIYQIGMIC  105 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~-~i~i~~~l~~~g~~~  105 (309)
                      .....++..........+++.|+.+.+|.+..+.+........+..++.++.|+++||+ |||+ .+.++..+..++.++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~  258 (352)
T cd06174         180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLL  258 (352)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHH
Confidence            33444555566666677788888877899999999999999999999999999999996 9999 999999988888887


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHH
Q 021653          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (309)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~  185 (309)
                      .....                      +...+++..++.|++.+...+....+..|..|++      +|++..+.++...
T Consensus       259 ~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  310 (352)
T cd06174         259 LALAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPE------ARGTASGLFNTFG  310 (352)
T ss_pred             HHHhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH------HHHHHHHHHHHHH
Confidence            77655                      5667788889999999999999999999999976      7999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Q 021653          186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       186 ~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      ++|..+++.+.+++.+..+|+..+.+.+++.+++.+..
T Consensus       311 ~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999998999999999888877766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09952 shikimate transporter; Provisional

Probab=99.52  E-value=2.3e-12  Score=122.51  Aligned_cols=179  Identities=15%  Similarity=0.114  Sum_probs=126.5

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      +....++...++..+.+|....+++.|+++.+|++......+.........++.++.|+++||+ |||+++..+.++..+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~  328 (438)
T PRK09952        250 GAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTL  328 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            3333334456666777888888999999999999987665555556666778888999999996 999998888766555


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +.+.+.....                  .......+.+..++.+++.+...+...++.+|.+|.+      .|++..++.
T Consensus       329 ~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~------~r~tg~g~~  384 (438)
T PRK09952        329 SAFPFFMALE------------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGAS------YRYSGAGVG  384 (438)
T ss_pred             HHHHHHHHHH------------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc------hhHHHHhHH
Confidence            4433332210                  0012333444556667888888888899999999987      688777774


Q ss_pred             -HHHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHHHHHHHHHHHH
Q 021653          182 -YFVMGAAILVAVTVLVYIQDNI--GWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       182 -~~~~~iG~~l~~~~~~~i~~~~--gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                       ..+..+|+.++|.+.+++.+..  +|..++.+.+++.+++.+..+.
T Consensus       385 ~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        385 YQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence             4455689999999999987744  4777777776666666555443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.51  E-value=6.4e-13  Score=126.58  Aligned_cols=148  Identities=15%  Similarity=0.170  Sum_probs=133.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 021653           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (309)
Q Consensus        52 ~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (309)
                      ++.++..+.+.+.+.+..++.++.+.+|+++||+ |-|+++..+.++..+++++...+..                    
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~--------------------  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS--------------------  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            5789999999999999999999999999999997 9999999999999999999998872                    


Q ss_pred             hhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchhhhh
Q 021653          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN-IGWGWGLG  210 (309)
Q Consensus       132 ~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~-~gw~~~f~  210 (309)
                      ...+.+.+.|+++|++.|...+++..+.+.+.|.+      +|+++.+..+.+..+|.+++..+.|++.+. .||+..|+
T Consensus       126 ~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY  199 (466)
T KOG2532|consen  126 IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFY  199 (466)
T ss_pred             hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHH
Confidence            13446789999999999999999999999999988      799999999999999999999999999888 99999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 021653          211 IPTFAMFLSIIAFLIG  226 (309)
Q Consensus       211 i~~~~~~~~~~~~~~~  226 (309)
                      +.+++.++..++++..
T Consensus       200 ~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  200 VFGIVGLIWFILWFLF  215 (466)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999887766665544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.51  E-value=2.6e-12  Score=118.60  Aligned_cols=156  Identities=12%  Similarity=0.077  Sum_probs=123.9

Q ss_pred             HHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 021653           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (309)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~  117 (309)
                      ......+++.|+++++|.++.+.+.+.....+...++.+++|+++||+ |||+.+.++.++..++.+......       
T Consensus       215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-------  286 (375)
T TIGR00899       215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN-------  286 (375)
T ss_pred             HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH-------
Confidence            344456688899889999999998887777777777889999999996 999998887766555544444333       


Q ss_pred             CCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021653          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (309)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~  197 (309)
                                     +.+.+++...+.|++.|...+....+..|..|++       +++..+.++...++|..+++.+.+
T Consensus       287 ---------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~g~~~~g  344 (375)
T TIGR00899       287 ---------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGWIIAGSVGG  344 (375)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence                           4555666777888888888888888888988753       568889999999999999999999


Q ss_pred             HhhccccchhhhhHHHHHHHHHHHHH
Q 021653          198 YIQDNIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       198 ~i~~~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      ++.+..||+..|++.+++.+++.++.
T Consensus       345 ~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       345 ILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHHH
Confidence            99998999999998888777666554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.51  E-value=1.2e-12  Score=123.60  Aligned_cols=181  Identities=5%  Similarity=-0.118  Sum_probs=117.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      +..+.+....++..+++..+...++.|+++++|++..+.+.+.+.+.++..+++++.|+++||+ |||++++++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            3456666666777777777889999999999999999999999999999999999999999996 999999887666554


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +..........+.                  .......+.++.++..|...........+..+..    .++++..++..
T Consensus        89 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~  146 (420)
T PRK09528         89 LFGPFFIYVFAPL------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV----SRRSGFEYGRA  146 (420)
T ss_pred             HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH----Hhhccccchhh
Confidence            4432221110000                  0000111222223322322222222222222211    11456666777


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHh
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      ....++|..+++.+.+++.+ .+|+..|++.+++.++..++.+..
T Consensus       147 ~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        147 RMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             HHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcc
Confidence            77789999999999998876 489999988777766655554443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.50  E-value=2.7e-12  Score=135.38  Aligned_cols=154  Identities=11%  Similarity=0.045  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCH--HHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPL--TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      ....+++..++.++...+....+..++...++.+.  ...+++.+++.+...++++++|+++||+ |||++++++.++.+
T Consensus        10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~   88 (1146)
T PRK08633         10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEV   88 (1146)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHH
Confidence            34444455555555554445555666666666654  3467888899999999999999999996 99999999988777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      ++.++..+...                   ..+.+.++++|++.|++.+...+...++++|.+|++      +|+..+++
T Consensus        89 ~~~~~~~~~~~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~  143 (1146)
T PRK08633         89 GLTLLIVLAYY-------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGL  143 (1146)
T ss_pred             HHHHHHHHHHH-------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhH
Confidence            66665554431                   115788999999999999999999999999999987      79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Q 021653          181 YYFVMGAAILVAVTVLVYIQDN  202 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~  202 (309)
                      +..+.++|.++++.+++++.+.
T Consensus       144 ~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        144 LEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999988765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.50  E-value=1.6e-12  Score=119.36  Aligned_cols=168  Identities=12%  Similarity=0.067  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~  104 (309)
                      +.+....++..+........++.|. +++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  285 (377)
T TIGR00890       208 WVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMA  285 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHH
Confidence            3333334444444444455566665 56899998889999999999999999999999996 999999998888888776


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH
Q 021653          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (309)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~  184 (309)
                      ++....                    ......++...++.+++.|...+..+.+.+|.+|++      +|++..++++..
T Consensus       286 ~~~~~~--------------------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~  339 (377)
T TIGR00890       286 AMLFIP--------------------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA------NSAANYGFLYTA  339 (377)
T ss_pred             HHHHcc--------------------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh------hhhhHhHHHHHH
Confidence            665433                    012233445567778888888888888999999987      799999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 021653          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       185 ~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~  220 (309)
                      .++|..+++.+.+++.+..||+..|.+.+++.++++
T Consensus       340 ~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       340 KAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            999999999999999999999999988877666543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.50  E-value=9.5e-13  Score=121.68  Aligned_cols=168  Identities=14%  Similarity=0.030  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+......++.....+....+++.|+++++|++..+.+.+.....++..++.+++|+++||+ |||+.+.++..+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  298 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            355556666777777778888899999889999999999988889999999999999999996 9999887665544433


Q ss_pred             H-HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH-
Q 021653          103 M-ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-  180 (309)
Q Consensus       103 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-  180 (309)
                      . .+.....                   ...+...++...++.+++.+...++...+.+|.+|++      .|++..+. 
T Consensus       299 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~  353 (394)
T TIGR00883       299 AVPLLMALL-------------------DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTE------VRYTGASLA  353 (394)
T ss_pred             HHHHHHHHh-------------------cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcc------ceeeEeeeh
Confidence            2 2222111                   0114455666677888888888899999999999987      57777776 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHH
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAM  216 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~  216 (309)
                      +..+..+|+.++|.+.+++.+..| |+..++..++..
T Consensus       354 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       354 YNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             hHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            455667889899999999998888 877666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.49  E-value=2e-12  Score=118.62  Aligned_cols=184  Identities=14%  Similarity=0.052  Sum_probs=149.6

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~   97 (309)
                      +.++|+.++.......... ...+.+.+.+++.+++|+|+.|.++++++..+...+..++-|++.||+ |.|++..++++
T Consensus        10 ~~~~~~L~~S~~af~v~F~-VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFM-VWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML   87 (417)
T ss_pred             cchhHHHHHHHHHHHHHHH-HHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence            5556666665554444444 444566677888899999999999999999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHH
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  177 (309)
                      +..+-.+.++++...                   .+.+.+++...++|++.|- .+...++.+..||++      ++|..
T Consensus        88 l~~IP~~~~~~a~~~-------------------~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~------~qG~A  141 (417)
T COG2223          88 LLLIPCLGLAFAVTY-------------------PSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKE------KQGLA  141 (417)
T ss_pred             HHHHHHHHHHHHccC-------------------CchHHHHHHHHHHhcccce-ehcccccccccCChh------hhhHH
Confidence            999988888888722                   2457888888888886554 456678899999998      79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccc---chhhhhHHHHHHHHHHHHHHHhCcce
Q 021653          178 FNWYYFVMGAAILVAVTVLVYIQDNIG---WGWGLGIPTFAMFLSIIAFLIGYPLY  230 (309)
Q Consensus       178 ~~~~~~~~~iG~~l~~~~~~~i~~~~g---w~~~f~i~~~~~~~~~~~~~~~~~~~  230 (309)
                      .+++- ..|+|..+...+...+....|   |+....+..+..++..+.+++.....
T Consensus       142 lGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~  196 (417)
T COG2223         142 LGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV  196 (417)
T ss_pred             HHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99988 899999999999999888888   99888888888877777777665443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.48  E-value=1.1e-11  Score=119.52  Aligned_cols=175  Identities=13%  Similarity=0.095  Sum_probs=133.9

Q ss_pred             CccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc----cchHHH-HHH
Q 021653           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY----AGRFWT-ITI   94 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~----~GR~~~-i~i   94 (309)
                      .||....++...+......+.....++.+++ +.|.+..+.+......  ..+++.++.|+++||+    +|||+. +.+
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~~--~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLVG--QAYVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            4555666777777777777767777888875 5589988888763222  2236889999999993    299986 556


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhh
Q 021653           95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  174 (309)
Q Consensus        95 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r  174 (309)
                      +.+...++.+++++..                   +..+.+.+.+.+++.+++.+...+...++..|.+|++      +|
T Consensus        87 ~~i~~~~~~~~~a~~~-------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~r  141 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE-------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------ER  141 (491)
T ss_pred             HHHHHHHHHHHHHHcC-------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hh
Confidence            6666666666665543                   1126777888888999999999999999999999976      79


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchhhhhHHHHHHHHHHHH
Q 021653          175 WKYFNWYYFVMGAAILVAVTVLVYIQD-NIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       175 ~~~~~~~~~~~~iG~~l~~~~~~~i~~-~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      ++..++...+..+|..+++.+..++.+ ..|||..|++.+++.++..+.
T Consensus       142 g~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        142 GAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888888 579999999988776655443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=2.5e-13  Score=123.35  Aligned_cols=165  Identities=16%  Similarity=0.103  Sum_probs=142.4

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 021653           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (309)
Q Consensus        52 ~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (309)
                      .++-++++.+.+.+.......+..++.|.+.||+ |+|-.+++|..+....++++++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            3456778899999999999999999999999995 999999999999999999999988                     


Q ss_pred             hhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhH
Q 021653          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGI  211 (309)
Q Consensus       132 ~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i  211 (309)
                       ++++++++|.++|+|.++..++..++++|.||++.     +|++.++.....+.+|-++||.++|.+-+..|.+.+|++
T Consensus       158 -sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV  231 (464)
T KOG3764|consen  158 -SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV  231 (464)
T ss_pred             -hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence             88899999999999999999999999999999986     799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-hCcceec--cCCCCChhHHHH
Q 021653          212 PTFAMFLSIIAFLI-GYPLYRN--LDPAGSPFTRLL  244 (309)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~  244 (309)
                      .++++++...+-++ ..|.-..  ..+++.+..++.
T Consensus       232 L~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll  267 (464)
T KOG3764|consen  232 LAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLL  267 (464)
T ss_pred             HHHHHHHHHHHHHheeCccccCccccccCccHHHHH
Confidence            99998886655443 3343222  234454555553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.48  E-value=4.2e-12  Score=127.09  Aligned_cols=131  Identities=11%  Similarity=0.017  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHH
Q 021653           64 LTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLL  143 (309)
Q Consensus        64 ~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  143 (309)
                      ..+..++..++.+++|+++||+ |||++++++.++..++.+++.+..                      +...+++.+++
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~----------------------s~~~ll~~~~l  657 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN----------------------SESAMIALLCL  657 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc----------------------cHHHHHHHHHH
Confidence            4455677788999999999996 999999999888888877777655                      44456666677


Q ss_pred             HHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Q 021653          144 AALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       144 ~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      .+++.++..+...++++|.+|++      .|++.+++.+....+|++++|.+++.+.+. +...+|++.+++.+++.++.
T Consensus       658 ~g~~~~~~~~~~~a~~aEl~Pt~------~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~  730 (742)
T TIGR01299       658 FGGLSIAAWNALDVLTVELYPSD------KRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLA  730 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Confidence            78877888888999999999987      799999999999999999999999877653 45567777766666655443


Q ss_pred             H
Q 021653          224 L  224 (309)
Q Consensus       224 ~  224 (309)
                      +
T Consensus       731 ~  731 (742)
T TIGR01299       731 L  731 (742)
T ss_pred             H
Confidence            3

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.48  E-value=1.2e-11  Score=116.14  Aligned_cols=166  Identities=13%  Similarity=0.092  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc----cchHH-HHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY----AGRFW-TITIASIIYQIGM  103 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~----~GR~~-~i~i~~~l~~~g~  103 (309)
                      ...+.+...+.....-+|.|+++ .|++..+.+.+......  .+..++.|+++||+    +|||| .+.++.++..++.
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            34455555555566778999975 59999999988666554  68899999999995    27776 6777777776666


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      ..+.+..                   ...+.+.+++..++.++..+...+...++.+|.+|++      +|++..++...
T Consensus        83 ~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~  137 (402)
T PRK11902         83 AAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVL  137 (402)
T ss_pred             HHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHH
Confidence            6665432                   1125566666666678888888899999999999877      69999999998


Q ss_pred             HHHHHHHHHHHHHHHhhcc-ccchhhhhHHHHHHHHHHHH
Q 021653          184 VMGAAILVAVTVLVYIQDN-IGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~~-~gw~~~f~i~~~~~~~~~~~  222 (309)
                      +.++|..+++.+..++.+. .|||..|++.+++.++..+.
T Consensus       138 g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        138 GYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            9999999998888888775 59999999988766554443

>PTZ00207 hypothetical protein; Provisional

Probab=99.47  E-value=1.1e-11  Score=120.81  Aligned_cols=175  Identities=13%  Similarity=0.057  Sum_probs=126.6

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH
Q 021653           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (309)
Q Consensus        19 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l   98 (309)
                      ++|......+.++.+... .|++.. ....+.+++|++..+.+.+.++.. ...++.+++|+++||+ |||+++.++.++
T Consensus        25 ~Rw~~lva~~~~~~~~g~-~y~fsv-~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll  100 (591)
T PTZ00207         25 RRFALLVLGAFCSICTSF-MYAFNL-ISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTV  100 (591)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            345444433344433333 234443 345678899999999988877643 3345667789999996 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      +.+|.++++++.. . ..              ..+.+.+++.|++.|+|.+...+.....+.++||.       +||...
T Consensus       101 ~~iG~ll~ala~~-~-~i--------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~  157 (591)
T PTZ00207        101 FCLGTLLFALTFQ-E-VI--------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVV  157 (591)
T ss_pred             HHHHHHHHHHHhc-c-cc--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHH
Confidence            9999999988630 0 00              12788899999999999999988888899999984       589999


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          179 NWYYFVMGAAILV-AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       179 ~~~~~~~~iG~~l-~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      ++...+.++|+.+ +++..+++.+  +|+..|++.+++.++..++
T Consensus       158 Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        158 AIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHH
Confidence            9999999999975 5555556553  5776776666655544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.47  E-value=1.1e-11  Score=116.17  Aligned_cols=175  Identities=11%  Similarity=0.022  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      .+.+.....+..+.++++..+++.|+++ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~  284 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF  284 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence            4444445555667777888899999975 899999999999999999999999999999996 99999998887777776


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      +++....   .                  +...+.  ..+.|+|.+...+.......+.+++++     .+++.+++.+.
T Consensus       285 ~~~~~~~---~------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~~~  336 (393)
T PRK09705        285 CGFIWLP---L------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFMQG  336 (393)
T ss_pred             HHHHHcc---c------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHHHH
Confidence            6544222   0                  111121  245678888877777667777775432     68999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHHHHHhCc
Q 021653          184 VMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      ..++++.++|.+.+++.+..| |+..|.+.+++.++..+..+...|
T Consensus       337 ~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        337 IGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999876 778888877776666555444443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.47  E-value=6.4e-12  Score=115.74  Aligned_cols=154  Identities=13%  Similarity=0.120  Sum_probs=114.4

Q ss_pred             HHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc----cchHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021653           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY----AGRFWTI-TIASIIYQIGMICLTISAILPQLRPP  118 (309)
Q Consensus        44 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~----~GR~~~i-~i~~~l~~~g~~~~~~~~~~~~~~~~  118 (309)
                      ...+.+.+++|+|..+.+..... ..... ..++.|+++||+    +||||.+ +.+.++..+....+.+..        
T Consensus         9 ~~~~~~~~~~g~s~~~~g~~~~~-~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~--------   78 (356)
T TIGR00901         9 NTLPYWLRSKNVSLKTIGFFSLV-GLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV--------   78 (356)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHH-HHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC--------
Confidence            33444456889999999988644 33333 388999999996    4999975 555655555555554432        


Q ss_pred             CCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021653          119 PCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY  198 (309)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~  198 (309)
                                 +..+.+.++...++.+++.+...+...++++|.+|++      +|+...++...+.++|.++++.+.+.
T Consensus        79 -----------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~  141 (356)
T TIGR00901        79 -----------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALV  141 (356)
T ss_pred             -----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHH
Confidence                       1124555565566778888888899999999999876      79999999999999999999999988


Q ss_pred             hhcccc--------chhhhhHHHHHHHHHHHHHH
Q 021653          199 IQDNIG--------WGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       199 i~~~~g--------w~~~f~i~~~~~~~~~~~~~  224 (309)
                      +.+..+        ||..|++.+++.++..+..+
T Consensus       142 l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       142 LASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            887777        99999988887766554433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.47  E-value=3.4e-12  Score=122.79  Aligned_cols=150  Identities=19%  Similarity=0.182  Sum_probs=114.3

Q ss_pred             hhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021653           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (309)
Q Consensus        40 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~  119 (309)
                      ....++|.|+++++|++..+++.+.+...++..++.+++|+++||+ |||+++.++.++..++.++.....         
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~---------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG---------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence            4567889999889999999999999999999999999999999996 999998887766555544333221         


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021653          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (309)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i  199 (309)
                                 ..+.+.+.+..++.+....+..+..+.+..|.+|++      +|++.+++++...++|+.++|.+.+++
T Consensus       363 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~lgp~l~g~l  425 (496)
T PRK03893        363 -----------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE------QRAAGLGFTYNVGALGGALAPILGALI  425 (496)
T ss_pred             -----------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH------HhhcccchhhhhhhHHHHHHHHHHHHH
Confidence                       113333333334333333344567778889999976      799999999999999999999999999


Q ss_pred             hccccchhhhhHHHHHH
Q 021653          200 QDNIGWGWGLGIPTFAM  216 (309)
Q Consensus       200 ~~~~gw~~~f~i~~~~~  216 (309)
                      .+..||+..+...+...
T Consensus       426 ~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        426 AQRLDLGTALASLSFSL  442 (496)
T ss_pred             hccCChHHHHHHHHHHH
Confidence            99999987776554433

>PRK12382 putative transporter; Provisional

Probab=99.45  E-value=6.7e-12  Score=117.19  Aligned_cols=160  Identities=16%  Similarity=0.183  Sum_probs=126.0

Q ss_pred             HHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 021653           34 EKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILP  113 (309)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~  113 (309)
                      .......+..+++.|+++ .|++.  .+.....+..+..++.++.|++.||+ |||+.+.++..+..++.+++....   
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---  300 (392)
T PRK12382        228 QGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP---  300 (392)
T ss_pred             HHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc---
Confidence            344455556667778754 56654  34455566677788899999999996 999999998888888776655443   


Q ss_pred             CCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021653          114 QLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV  193 (309)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~  193 (309)
                                         +...+++..++.|++.+...+.......|.+|++      +|++..++++...++|..+++
T Consensus       301 -------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~ig~  355 (392)
T PRK12382        301 -------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ------VRGTALGGYAAFQDIAYGVSG  355 (392)
T ss_pred             -------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                               4556667788889998888888888888888876      799999999999999999999


Q ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          194 TVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       194 ~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      .+.+++.+..||+..|.+.+++.+++.++.+.
T Consensus       356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        356 PLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988877777665543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.44  E-value=6.3e-16  Score=146.91  Aligned_cols=157  Identities=18%  Similarity=0.199  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHH
Q 021653           58 TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAIL  137 (309)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (309)
                      ...++..+...++..+|++++|+++||+ |||++++++.++.++|.++..++..                   ..+...+
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~~~~  105 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS-------------------YNNFWML  105 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc-------------------ccccccc
Confidence            3467888999999999999999999996 9999999999999999988887651                   1256788


Q ss_pred             HHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---cccchhhhhHHHH
Q 021653          138 YVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD---NIGWGWGLGIPTF  214 (309)
Q Consensus       138 ~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~---~~gw~~~f~i~~~  214 (309)
                      .++|++.|+|.|+..+..+.++.|..|++      .|+.+..+++.+..+|.+++..+...+.+   ..+||..+.+.++
T Consensus       106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~  179 (451)
T PF00083_consen  106 LIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAI  179 (451)
T ss_pred             ccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999987      68999999999889998888766443332   3459988887776


Q ss_pred             HHHHH--HHHHHHhCcceeccCCCCChh
Q 021653          215 AMFLS--IIAFLIGYPLYRNLDPAGSPF  240 (309)
Q Consensus       215 ~~~~~--~~~~~~~~~~~~~~~~~~~~~  240 (309)
                      ..++.  ...+.+++|+|...+.+.++.
T Consensus       180 ~~l~~~~~~~~~pESP~wL~~~~~~~~A  207 (451)
T PF00083_consen  180 PSLLVLLLRFFLPESPRWLLSKGRDEEA  207 (451)
T ss_pred             ccccccccccccccccceeccccccccc
Confidence            65332  335678889987665554443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.44  E-value=1.1e-11  Score=114.15  Aligned_cols=179  Identities=13%  Similarity=0.035  Sum_probs=126.3

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHH-HHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT-ITIASIIYQ  100 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~-i~i~~~l~~  100 (309)
                      +..+......++.....+....+++.|+++.+|.+..+.+.+.+...++..++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            3455566667777777778888899999999999999999999999999999999999999996 98861 111111122


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      ++.+..........               .............+.+.+.+ ..+....+.+|.+|++      .|++..++
T Consensus       294 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~g~~~~~  351 (399)
T TIGR00893       294 IAGLVLSLLMFATN---------------YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGN------IAGLTGGL  351 (399)
T ss_pred             HHHHHHHHHHHHhc---------------cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChh------HHHHHHHH
Confidence            22111111110000               00022222222333333443 6788899999999987      79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHHH
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~~~  223 (309)
                      ++...++|..+++.+.+++.+..| |+..|.+.+++.+++.+..
T Consensus       352 ~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       352 INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888 9999888877776665544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.44  E-value=1.8e-11  Score=111.83  Aligned_cols=137  Identities=14%  Similarity=0.102  Sum_probs=118.9

Q ss_pred             HhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021653           39 VGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPP  118 (309)
Q Consensus        39 ~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~  118 (309)
                      +.....+.+.+++.++++..+++.+...+.+++.++++..|++.+|+ |+|+.+++|..++.+|+.+..-++        
T Consensus        29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa--------   99 (422)
T COG0738          29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAA--------   99 (422)
T ss_pred             hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhh--------
Confidence            44566788899999999999999999999999999999999999996 999999999999999999987655        


Q ss_pred             CCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021653          119 PCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY  198 (309)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~  198 (309)
                                 +...+.+|.+++++.+.|.|...+...++++...+++      .-..-.+..+....+|+.++|+++++
T Consensus       100 -----------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~------~a~~rlnl~q~fn~lGa~~gp~~g~~  162 (422)
T COG0738         100 -----------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE------SAAFRLNLAQAFNGLGAILGPLLGSS  162 (422)
T ss_pred             -----------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch------hHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                       2347889999999999999999999999999999975      23444556666788899999998877


Q ss_pred             hhc
Q 021653          199 IQD  201 (309)
Q Consensus       199 i~~  201 (309)
                      +..
T Consensus       163 lil  165 (422)
T COG0738         163 LIL  165 (422)
T ss_pred             HHH
Confidence            654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.44  E-value=8.9e-12  Score=117.84  Aligned_cols=173  Identities=9%  Similarity=0.003  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCC--------HHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMP--------LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      +..++..........+++.|+. +.+.+        ....+.+.+...+...++.++.|+++||+ |||+++.++.++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~  292 (418)
T TIGR00889       215 FFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWA  292 (418)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            3333433333344456677775 34433        35668888888888889999999999996 99999999999888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      ++..++.....                  +......+++..++.|++.+...+....+++|.+|++      .|++..++
T Consensus       293 v~~~l~~~~~~------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~  348 (418)
T TIGR00889       293 LRFGFFAYGDP------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGL  348 (418)
T ss_pred             HHHHHHHHcCc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHH
Confidence            87666654320                  0113456677888999999988888899999999987      79999999


Q ss_pred             HH-HHHHHHHHHHHHHHHHhhcc------ccchhhhhHHHHHHHHHHHHHHHhC
Q 021653          181 YY-FVMGAAILVAVTVLVYIQDN------IGWGWGLGIPTFAMFLSIIAFLIGY  227 (309)
Q Consensus       181 ~~-~~~~iG~~l~~~~~~~i~~~------~gw~~~f~i~~~~~~~~~~~~~~~~  227 (309)
                      ++ ...++|..++|.+.+++.+.      .||+..|.+.+++.++..++++...
T Consensus       349 ~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       349 FTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF  402 (418)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            97 56789999999999998876      4699999888777666655554443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.44  E-value=1.4e-12  Score=102.65  Aligned_cols=131  Identities=11%  Similarity=0.178  Sum_probs=111.1

Q ss_pred             HHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHH
Q 021653           66 NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAA  145 (309)
Q Consensus        66 ~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  145 (309)
                      .+.++..++.++.|+++||+ |||+.+..+..+..++.+......                      +.+.+.+.+++.|
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g   62 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS----------------------NITVLIIARFLQG   62 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHH
Confidence            45567778899999999996 999999999888888877766554                      6677888889999


Q ss_pred             HhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          146 LGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       146 ig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      ++.+...+....+..|.+|++      +|++..+..+...++|..+++.+.+++.+..+|++.+++.++..++..+....
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        63 FGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999987      69999999999999999999999999988889999998877766665544433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.44  E-value=1.1e-11  Score=115.86  Aligned_cols=163  Identities=11%  Similarity=0.018  Sum_probs=124.3

Q ss_pred             HHHHHHhhHHHHHHHhHHhcCCCHH---HHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Q 021653           34 EKLAVVGFNTNMISYLTTQLHMPLT---KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (309)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~s~~---~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~  110 (309)
                      ..+....+...++.|+.+..+....   ..+.+.+...++..++.++.|+++||+ |||+.+.++..+..++.+.+....
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
T PRK09874        231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFVQ  309 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHhc
Confidence            3334344556677777765443221   234445556667778888999999996 999999988887776666555443


Q ss_pred             hcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHH
Q 021653          111 ILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL  190 (309)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~  190 (309)
                                            +.+.+++.+++.|++.+...+.......+..|++      ++++.+++++...++|..
T Consensus       310 ----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~  361 (408)
T PRK09874        310 ----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRDIGNV  361 (408)
T ss_pred             ----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHHHHHH
Confidence                                  5566777888899999999888888888887766      689999999999999999


Q ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       191 l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      ++|.+.+.+.+..||+..|++.+++.+++.+..+.
T Consensus       362 ~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        362 TGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             hhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988887777665544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.44  E-value=3.1e-11  Score=112.73  Aligned_cols=170  Identities=11%  Similarity=-0.003  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~  106 (309)
                      .....++.....+....+++.|+.+.+|++..+++.+.+...++..++.++.|+++||+ |||+. .++..+..++..++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~~~l  287 (390)
T PRK03545        210 LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCLLLL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHHHHH
Confidence            33344444455555667788888888999999999999999999999999999999996 98764 44444444443333


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHH
Q 021653          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (309)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~  186 (309)
                      ....                     .+...+++..++.|++.+...+.....+.+..|+       .+++..++++...+
T Consensus       288 ~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~  339 (390)
T PRK03545        288 LPAA---------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSGIFN  339 (390)
T ss_pred             HHHh---------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHHHHH
Confidence            2211                     1455666777788888877777777777777664       47888898888899


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHh
Q 021653          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       187 iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      +|..+|+.+.+++.+..|++..|++.+++.+++++..+..
T Consensus       340 ~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        340 IGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888887777665443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.44  E-value=9.8e-12  Score=118.62  Aligned_cols=176  Identities=15%  Similarity=0.110  Sum_probs=119.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-chHHHH-HHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA-GRFWTI-TIASIIY   99 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~-GR~~~i-~i~~~l~   99 (309)
                      +..+...+..++.....++...++|.|++++.|++..+++.....+.++..++.+++|+++||+. |||+.. .+...+.
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  332 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence            34555556666666777888889999999999999999888888888888899999999999951 444432 2222333


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      .++.+++....                    ..+....++..++.|.+..+.......+..|.+|++      .||+..+
T Consensus       333 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g  386 (452)
T PRK11273        333 TIATIVYWLNP--------------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAG  386 (452)
T ss_pred             HHHHHHHHHhc--------------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChh------hhhhHHH
Confidence            33333322211                    002333334444444433332233344567889887      7999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Q 021653          180 WYYFVMGAAILV-AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       180 ~~~~~~~iG~~l-~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      +.+...++|+.+ +|.+.+++.+..||+..|++.++..+++++..
T Consensus       387 ~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~  431 (452)
T PRK11273        387 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  431 (452)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            998888888655 79999999999999999988887766665443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.43  E-value=6.7e-12  Score=116.80  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~  106 (309)
                      ++....+..+..+....+++.|+.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..+..+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~  321 (405)
T TIGR00891       243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPV  321 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHH
Confidence            33444444555556677889999999999999999999999999999999999999996 99999888776543322221


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHH
Q 021653          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (309)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~  186 (309)
                      ....                     .+.+.+.++.++.++..++..+..+.++.|.+|++      .|++..+..+...+
T Consensus       322 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~  374 (405)
T TIGR00891       322 FAIG---------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD------QRAAGLGFTYQLGN  374 (405)
T ss_pred             HHhC---------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc------hhHHHhhHHHHHHH
Confidence            1111                     13445556666677777777788889999999987      79999999999999


Q ss_pred             HHHHHHHHHHHHhhcccc-chhhhhH
Q 021653          187 AAILVAVTVLVYIQDNIG-WGWGLGI  211 (309)
Q Consensus       187 iG~~l~~~~~~~i~~~~g-w~~~f~i  211 (309)
                      +|+.++|.+.+++.+..| |+..+..
T Consensus       375 ~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       375 LGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHh
Confidence            999999999999999888 7665544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.43  E-value=1.5e-11  Score=114.67  Aligned_cols=157  Identities=12%  Similarity=-0.061  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHH----HHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT----IASIIYQIG  102 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~----i~~~l~~~g  102 (309)
                      +.+..++...++.....++|.|+ +++|+|..+.+.+.+.+.+...+++++.|.++||+ ||++...    ++..+..+ 
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~-   85 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAA-   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHH-
Confidence            33334444444444556677887 47899999999999999999999999999999996 9854332    22211111 


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                       .+...+.                      +.+.+++.+.+.+.+.+...+...++..|. + +      +|+..++...
T Consensus        86 -~~~~~~~----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-~------~~~~~~g~~~  134 (382)
T TIGR00902        86 -AFSAGAH----------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-K------QFGLDYGKVR  134 (382)
T ss_pred             -HHHHhhh----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-H------HcCCCccHHH
Confidence             1122222                      678888889989988888877777775442 2 2      5777888888


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 021653          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMF  217 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~  217 (309)
                      ...++|..++|.+++++.+..||+..|++..++.+
T Consensus       135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~  169 (382)
T TIGR00902       135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA  169 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            89999999999999999999999999887665533

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.43  E-value=1.8e-11  Score=114.62  Aligned_cols=164  Identities=10%  Similarity=-0.040  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~  108 (309)
                      ...++.....+....++|.|+. +.|++..+.+.+.....++..++.++.|+++||+ |||+.+.++.+...++.+.+..
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  304 (406)
T PRK11551        227 ISYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA  304 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444556667777888886 4799999999999999999999999999999996 9999988866655555444433


Q ss_pred             HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHH
Q 021653          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (309)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG  188 (309)
                      ..                      +...+++..++.|++.++..+....+..|.+|++      .|++..++++....+|
T Consensus       305 ~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g  356 (406)
T PRK11551        305 AP----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ------VRGTGVGAAVAVGRLG  356 (406)
T ss_pred             cC----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchh------hhhhhhhHHHHhhhHH
Confidence            22                      3444555666778888778888889999999987      7999999999999999


Q ss_pred             HHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHH
Q 021653          189 ILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       189 ~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~~  222 (309)
                      ..++|.+.+++.+..+ |...+++...+.+++.+.
T Consensus       357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK11551        357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA  391 (406)
T ss_pred             HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999887654 455555554444444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.43  E-value=1.4e-11  Score=116.04  Aligned_cols=160  Identities=7%  Similarity=-0.060  Sum_probs=129.0

Q ss_pred             HHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 021653           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (309)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~  117 (309)
                      .+++..++|.|+++.+|++....+.+.+...++..++.++.++++||. ++++.+..+.++..++.+++....       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence            345666788999888999999999999999999999999999999995 888888888777777766555433       


Q ss_pred             CCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021653          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (309)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~  197 (309)
                                     +.....+..++.|++.+...+...+++.|.+|++      .|++..++++...++|..+++.+.+
T Consensus       311 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        311 ---------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDE------MLGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHHhhhHhHHHHHHH
Confidence                           4555666777888888877777778889999976      7999999999999999999999999


Q ss_pred             HhhccccchhhhhHHHHHHHHHHHHHHHh
Q 021653          198 YIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       198 ~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      ++.+..|++..+++.+++.++..++.+..
T Consensus       370 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        370 GLGAMMTPVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence            99999998888877776655544444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.42  E-value=6.7e-12  Score=118.67  Aligned_cols=174  Identities=14%  Similarity=0.145  Sum_probs=126.1

Q ss_pred             HHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc---cchHH-HHHHHHHHHHHHHHHHH
Q 021653           32 VCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFW-TITIASIIYQIGMICLT  107 (309)
Q Consensus        32 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~---~GR~~-~i~i~~~l~~~g~~~~~  107 (309)
                      +..++.+..+..+++.|+++++|+++.+++.+.++..+...+..++.|+++||.   +|||| .++++.+...++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            344555566677899999999999999999999999999999999999999983   58855 56677777777766665


Q ss_pred             HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHH
Q 021653          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA  187 (309)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~i  187 (309)
                      ...   ...             .......+++.+++.+++.+....+..++.+|..++.+     +|++..++.+...++
T Consensus        89 ~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~  147 (437)
T TIGR00792        89 TTP---DFS-------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATL  147 (437)
T ss_pred             hCC---CCC-------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHH
Confidence            432   110             11234556666777888888888788888888875432     688888888888888


Q ss_pred             HHHHHHHHHHHhh-------ccccchhhhhHHHHHHHHHHHHHHHh
Q 021653          188 AILVAVTVLVYIQ-------DNIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       188 G~~l~~~~~~~i~-------~~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      |+.++..+.+.+.       +..+|+..+.+.+++.++..++....
T Consensus       148 g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  193 (437)
T TIGR00792       148 GGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG  193 (437)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence            8877666544433       24589988888777666555444333

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.42  E-value=1.1e-11  Score=118.54  Aligned_cols=174  Identities=10%  Similarity=0.038  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc-cchHHHHHHHHHHH--
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY-AGRFWTITIASIIY--   99 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~-~GR~~~i~i~~~l~--   99 (309)
                      ..+..+...++..+.++....+++.|++ ++|++..+++.+.+...++..++.+++|+++||. +++++...++..+.  
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  320 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN  320 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence            3444555556666677777788899986 4799999999999999999999999999999983 24444444333222  


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      .++.++.....                      +.+.+++.+++.|++.+...++...+..|.+|++      ++++..+
T Consensus       321 ~l~~ll~~~~~----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~------~~g~~~g  372 (455)
T TIGR00892       321 GLTHLLCALAG----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ------RFSSAVG  372 (455)
T ss_pred             HHHHHHHHHhc----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH------HHhhHHh
Confidence            23333333322                      5566777888999999999999999999999876      7999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc-cchhhhhHHHHHHHHHHHHHHH
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNI-GWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~-gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      .++...++|..++|.+.+++.+.. +|+..|++.+++.+++.+...+
T Consensus       373 ~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~  419 (455)
T TIGR00892       373 LVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAI  419 (455)
T ss_pred             HHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHH
Confidence            999999999999999999998877 5999999888877666544333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.42  E-value=3.8e-11  Score=111.88  Aligned_cols=154  Identities=14%  Similarity=0.165  Sum_probs=118.6

Q ss_pred             HHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 021653           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (309)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~  117 (309)
                      +.....++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..++.+...  .       
T Consensus       216 ~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~--~-------  284 (381)
T PRK03633        216 LGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML--S-------  284 (381)
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh--h-------
Confidence            33344567888864 699999999999999999999999999999996 999999888877777655433  1       


Q ss_pred             CCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021653          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (309)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~  197 (309)
                                     . ..+.....+.|++.+...+.......|..|++      +++...+.++...++|..++|.+.+
T Consensus       285 ---------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~igp~~~G  342 (381)
T PRK03633        285 ---------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHH------ELVAMNQALLLSYTVGSLLGPSFTA  342 (381)
T ss_pred             ---------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           1 11234556667776777788888888888765      4666777777888999999999999


Q ss_pred             HhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          198 YIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       198 ~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      ++.+..||++.|.+.+.+.++..+..+
T Consensus       343 ~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        343 MLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            999999999999887777765544433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.42  E-value=5.9e-12  Score=118.82  Aligned_cols=158  Identities=13%  Similarity=0.060  Sum_probs=124.2

Q ss_pred             HHhhHHHHHHHhHHhc---CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 021653           38 VVGFNTNMISYLTTQL---HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQ  114 (309)
Q Consensus        38 ~~~~~~~l~~yl~~~~---~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~  114 (309)
                      +......++.|+.+.+   +.+..+.+.+.+...+...++.+++|+++||+ |||+.+.++.++..++.++..++.    
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~----  313 (420)
T PRK09528        239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT----  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc----
Confidence            3334445777776543   56666778888888888889999999999996 999999998888888877776654    


Q ss_pred             CCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH-HHHHHHHHHHHHH
Q 021653          115 LRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-YYFVMGAAILVAV  193 (309)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-~~~~~~iG~~l~~  193 (309)
                                        +.+.+++.+.+.+++.+...+....++.|.+|++      .+++..+. ++...++|..+++
T Consensus       314 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~~lg~~ig~  369 (420)
T PRK09528        314 ------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR------LSATIYLVGFQFAKQLGAVFLS  369 (420)
T ss_pred             ------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------ceeeeeeehHHHHHHHHHHHHH
Confidence                              5667777888889888888777888889999876      56666544 6677889999999


Q ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          194 TVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       194 ~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      .+.+++.+..||+..|.+.+++.++..++.+
T Consensus       370 ~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        370 TLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987777665554433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.41  E-value=2.2e-11  Score=128.62  Aligned_cols=141  Identities=13%  Similarity=-0.004  Sum_probs=108.4

Q ss_pred             HhcCCCH-HHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH--HHHHHHHHHHHH-hhcCCCCCCCCCCcccc
Q 021653           51 TQLHMPL-TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI--IYQIGMICLTIS-AILPQLRPPPCEGEQVC  126 (309)
Q Consensus        51 ~~~~~s~-~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~--l~~~g~~~~~~~-~~~~~~~~~~~~~~~~~  126 (309)
                      ...+.+. ...++..+++.+...++++++|+++||+ |||+++.....  +.+.+..+..+. .                
T Consensus        44 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~~----------------  106 (1140)
T PRK06814         44 GALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHLN----------------  106 (1140)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence            3344433 3456677788899999999999999996 99997643222  222222222222 2                


Q ss_pred             ccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 021653          127 QEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWG  206 (309)
Q Consensus       127 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~  206 (309)
                            +.+.++++|+++|++.+...+...+++.|.++++      +++.+.++.+.+.++|.++||.+++++.+..+|+
T Consensus       107 ------s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~  174 (1140)
T PRK06814        107 ------SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFV  174 (1140)
T ss_pred             ------hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence                  7888999999999999999999999999999987      7999999999999999999999999999989999


Q ss_pred             hhhhHHHHHHHHHH
Q 021653          207 WGLGIPTFAMFLSI  220 (309)
Q Consensus       207 ~~f~i~~~~~~~~~  220 (309)
                      +.|....++.++++
T Consensus       175 ~~~~~~~~~~~~~~  188 (1140)
T PRK06814        175 ILVALLMGIAVLGW  188 (1140)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88844444444333

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.41  E-value=2.3e-11  Score=115.47  Aligned_cols=177  Identities=11%  Similarity=-0.011  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc--hHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG--RFWTITIASIIYQI  101 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~G--R~~~i~i~~~l~~~  101 (309)
                      .+.+.+..++.....+++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+  |++......+...+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~  324 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILL  324 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHH
Confidence            4444444555556666777889999988899999999999999999999999999999999522  23322222111111


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +.+.+....   .                 .+.....+..+..|++..+.........+|.+|++      .|++..++.
T Consensus       325 ~~~~~~~~~---~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~  378 (434)
T PRK11663        325 SVGSLWLMP---F-----------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKE------AAGAATGFV  378 (434)
T ss_pred             HHHHHHHcc---c-----------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHh------hHHhHHHHH
Confidence            111111111   0                 02222222233334333222233345668888766      799999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHh
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      +...++|..++|.+.+++.+..||+..|++.+++.+++.+..++.
T Consensus       379 ~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  423 (434)
T PRK11663        379 GLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPF  423 (434)
T ss_pred             HHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888877766555443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.41  E-value=1.3e-11  Score=119.94  Aligned_cols=149  Identities=11%  Similarity=0.143  Sum_probs=113.8

Q ss_pred             HHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021653           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (309)
Q Consensus        43 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~  122 (309)
                      .....+..+++|-+ ....++.+.+.+...+..++.|.++|.+ |||+.++++.++.++|.++.+.+.            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            34556777888776 4566778889999999999999999995 999999999999999999999877            


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021653          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (309)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~  202 (309)
                                +...+.++..+.|+|.|... .....++|..|.+      .|.....+.....-+....++.+...+..+
T Consensus       130 ----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~  192 (599)
T PF06609_consen  130 ----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAH  192 (599)
T ss_pred             ----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccC
Confidence                      78889999999999987766 4456689999976      465554444433333333455555555556


Q ss_pred             ccchhhhhHHHHHHHHHHHH
Q 021653          203 IGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       203 ~gw~~~f~i~~~~~~~~~~~  222 (309)
                      .+|||.|++.++...++++.
T Consensus       193 ~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  193 SGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             CCcchHHHHHHHHHHHHHHH
Confidence            68999999988877666544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.40  E-value=1.4e-11  Score=113.81  Aligned_cols=157  Identities=14%  Similarity=0.135  Sum_probs=112.7

Q ss_pred             HHHHHhHHhcC--CCHHHHHHHHHH--H---HHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 021653           44 NMISYLTTQLH--MPLTKAANTLTN--F---GGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLR  116 (309)
Q Consensus        44 ~l~~yl~~~~~--~s~~~~~~~~~~--~---~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~  116 (309)
                      .+..++.+++.  .++.+.+.+.+.  +   .+...+++++.|+++||+ |||+++.++.++..++.+++.++...+.. 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-   91 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI-   91 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence            34455555543  334444443332  2   233346789999999996 99999999999999988888765511000 


Q ss_pred             CCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021653          117 PPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (309)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~  196 (309)
                                   .......++++|++.|+|.+...+..+.+++|.+|++      +|+...++.+.+..+|..+++.+.
T Consensus        92 -------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883        92 -------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             -------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHH
Confidence                         0001246788999999999999999999999999987      799999999999999999988776


Q ss_pred             HHhh--------ccccchhhhhHHHHHHHHHHH
Q 021653          197 VYIQ--------DNIGWGWGLGIPTFAMFLSII  221 (309)
Q Consensus       197 ~~i~--------~~~gw~~~f~i~~~~~~~~~~  221 (309)
                      ..+.        +..+||+.|.+.+++.++..+
T Consensus       153 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       153 LLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence            5543        356899999887766555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.40  E-value=3.5e-11  Score=114.23  Aligned_cols=152  Identities=11%  Similarity=0.027  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-HHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI-CLT  107 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~-~~~  107 (309)
                      ...++....++.+..++|.|+++.+|++..+++.......++..++.+++|+++||+ |||+.+.++..+..+... ...
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence            334445566777888899999988999999888888888888889999999999996 999988776544332211 111


Q ss_pred             HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH-HHH
Q 021653          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF-VMG  186 (309)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~-~~~  186 (309)
                      ...  .                 ........+..++.+++.|...+....+..|.+|++      .|++..++.+. +..
T Consensus       324 ~~~--~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~------~rg~~~g~~~~~~~~  378 (434)
T PRK15075        324 WLV--A-----------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAE------VRTAGFSLAYSLATA  378 (434)
T ss_pred             HHH--c-----------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC------ccchheeHHHHHHHH
Confidence            111  0                 002223334445556667766666778889999988      68888887544 444


Q ss_pred             HHHHHHHHHHHHhhccccch
Q 021653          187 AAILVAVTVLVYIQDNIGWG  206 (309)
Q Consensus       187 iG~~l~~~~~~~i~~~~gw~  206 (309)
                      +++.++|.+.+++.+..|+.
T Consensus       379 ~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        379 IFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHhhhHHHHHHHHHHhcCCc
Confidence            45778999999999888864

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.39  E-value=3e-11  Score=112.63  Aligned_cols=152  Identities=12%  Similarity=-0.041  Sum_probs=111.6

Q ss_pred             HHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHHHh
Q 021653           35 KLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF----WTITIASIIYQIGMICLTISA  110 (309)
Q Consensus        35 ~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~----~~i~i~~~l~~~g~~~~~~~~  110 (309)
                      .++.......++.|++ ++|.|..+.+.+.+.+.+...+++++.|.++||+ ||+    +.+.++..+.  +........
T Consensus        17 ~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~~~~~   92 (382)
T PRK11128         17 FFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFWFGAH   92 (382)
T ss_pred             HHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHHHhcc
Confidence            3344445567788884 6899999999999999999999999999999996 984    3332222111  111111112


Q ss_pred             hcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHH
Q 021653          111 ILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL  190 (309)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~  190 (309)
                                            +.+.+++.|.+.|++.+...+...++..+..+        +|+..++......++|..
T Consensus        93 ----------------------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--------~~~~a~~~~~~~~~lg~~  142 (382)
T PRK11128         93 ----------------------SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--------QIGLDYGKVRLWGSIAFV  142 (382)
T ss_pred             ----------------------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--------hccCCcchHHHHHHHHHH
Confidence                                  67788889999999988888887777776522        356666667777789999


Q ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 021653          191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       191 l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~  220 (309)
                      ++|.+++++.+.+||+..|++.++..++..
T Consensus       143 igp~lgg~l~~~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        143 IGSALTGKLVSWFGEQAILWILTAGVASML  172 (382)
T ss_pred             HHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            999999999999999999987776544443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.39  E-value=8.8e-11  Score=109.57  Aligned_cols=169  Identities=8%  Similarity=-0.044  Sum_probs=139.4

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      |..+..++..++.....+...++.+.|++ ++|.+....+.+.+...+...++.++.+.+.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            44555556666666777777788899996 4899999999998888888888999999999996 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +.+++.+..                      +.+.+++...+.|+..|...+....++.+. |++      .+++..+.+
T Consensus       283 ~~~~~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~------~~~~~q~~~  333 (382)
T TIGR00902       283 RWAIIGAIE----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS------EIAKLQALY  333 (382)
T ss_pred             HHHHHHhHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh------hHHHHHHHH
Confidence            988887665                      778888889999999999999999999987 765      578888887


Q ss_pred             H-HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          182 Y-FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       182 ~-~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      + ....+|..+++.++|++.+..|+ ..|++.+++.++++++
T Consensus       334 ~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       334 NALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            6 46789999999999999999886 5677777766665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00897 2A0118 polyol permease family

Probab=99.38  E-value=8.4e-11  Score=110.42  Aligned_cols=176  Identities=13%  Similarity=0.055  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHH-HHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT-IASIIYQI  101 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~-i~~~l~~~  101 (309)
                      ..+...+..++....+++...++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~  300 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI  300 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence            3445555566677777888888998885 5899999998888888999999999999999996 9988764 23333333


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +.+.+....   ..              ...+.+..++..++.|++.+...+ ......|..|+       +|++..+++
T Consensus       301 ~~~~l~~~~---~~--------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-------~~g~~~g~~  355 (402)
T TIGR00897       301 FTLALYYIP---QH--------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAPK-------HKGAAMSVL  355 (402)
T ss_pred             HHHHHHHHH---Hc--------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcc-------hhHHHHHHH
Confidence            322222211   00              001344555666777877776544 34555665443       599999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      +...++|+.++|.+.+.+.+..||...+++.+++.+++.++.++
T Consensus       356 ~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       356 NLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888877776655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.38  E-value=7.2e-11  Score=113.13  Aligned_cols=185  Identities=15%  Similarity=0.123  Sum_probs=148.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchH--HHHHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF--WTITIASII   98 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~--~~i~i~~~l   98 (309)
                      .|.....++..++-+-+...+......|.++++|++..+...+..+..+.+.++++++|++.||+ |.|  ++++++.++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL  358 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence            45666666677777777777888889999999999999999999999999999999999999996 999  888887776


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      +.+..+.-.+.. .+...             .-.+.+.|++.-++.|+..|+.++..-++.+|..|++      +.+.+|
T Consensus       359 ~~~i~~~g~~G~-~~~~~-------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~efF  418 (477)
T PF11700_consen  359 WIIIPLYGLFGF-WPSFF-------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEFF  418 (477)
T ss_pred             HHHHHHHHHHHh-hhccc-------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHHH
Confidence            644333322211 11100             0126677888888999999999999999999999997      789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHHHHHh
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      +.|.+..-..+.+||.+.+.+.+..| -|.++....++.++++++++..
T Consensus       419 gly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  419 GLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999988876 7888888888888887666443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.36  E-value=1.7e-10  Score=111.38  Aligned_cols=172  Identities=12%  Similarity=0.038  Sum_probs=121.9

Q ss_pred             HHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHH-HHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q 021653           31 EVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT-NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTIS  109 (309)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~-~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~  109 (309)
                      .++.....+....+.++|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |||+.+.++.++..++.+.....
T Consensus       231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l  309 (491)
T PRK11010        231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL  309 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555667788888889999999998874 55678899999999999996 99998877666555544333221


Q ss_pred             hhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHH
Q 021653          110 AILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAI  189 (309)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~  189 (309)
                      ...                  ..+...+.+..++..+..|...+...++..+..+++      ..++.++.++...++|.
T Consensus       310 ~~~------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~------~~~t~~gl~~s~~~lg~  365 (491)
T PRK11010        310 SIT------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS------FSATQFALLSALSAVGR  365 (491)
T ss_pred             Hhc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CcHHHHHHHHHHHHHHH
Confidence            100                  013333344445544444544455667777888876      56777888888889999


Q ss_pred             HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhC
Q 021653          190 LVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (309)
Q Consensus       190 ~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~  227 (309)
                      .+++.+.|++.+..||+..|.+.+++.+.++++....+
T Consensus       366 ~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        366 VYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999988888887766655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.35  E-value=6.8e-11  Score=111.95  Aligned_cols=163  Identities=15%  Similarity=0.034  Sum_probs=114.7

Q ss_pred             HHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 021653           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (309)
Q Consensus        44 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  123 (309)
                      +...++.+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..++.+++........ ..      
T Consensus       305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------  376 (481)
T TIGR00879       305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV-TG------  376 (481)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-CC------
Confidence            334455567899998888888888889999999999999996 9999999988877777766653221000 00      


Q ss_pred             cccccccchhHHHHHHHHHHHHHhhh-cchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021653          124 QVCQEANKGQVAILYVSLLLAALGSG-GIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (309)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~gig~g-~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~  202 (309)
                           .+............+.+.+.+ +..+....+.+|.+|++      .|++..+..+...++|+.+++.+.+++.+.
T Consensus       377 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~  445 (481)
T TIGR00879       377 -----SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS------LRPKGISIAVAANWLANFIVGFLFPTMLES  445 (481)
T ss_pred             -----cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 000012222222222222222 23355666779999987      699999999999999999999999999888


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHH
Q 021653          203 IGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       203 ~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      .+|++.|++.+++.+++.++...
T Consensus       446 ~~~~~~f~~~~~~~~~~~i~~~~  468 (481)
T TIGR00879       446 IGVGGVFIFFGGLNVLGLIFVYF  468 (481)
T ss_pred             cCccceehhHHHHHHHHHHHHhe
Confidence            89999998888777666655443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.35  E-value=3.7e-11  Score=115.51  Aligned_cols=173  Identities=8%  Similarity=0.031  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHH-----HHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-----TITIASIIY   99 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~-----~i~i~~~l~   99 (309)
                      +.+.+..++.....+.+..+++.|+.+++|++..+++.+.+...++..++.+++|+++||+ |||+     .........
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~  333 (476)
T PLN00028        255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHH
Confidence            3333333334444455667789999888999999999999999999999999999999996 8762     222111111


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      +.+..+..+..                    ..+.....+..++.+++.+...+...++..+..|+       .++...+
T Consensus       334 l~~i~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g  386 (476)
T PLN00028        334 LGGVFCIWLGR--------------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRR-------SLGVISG  386 (476)
T ss_pred             HHHHHHHHhcc--------------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccChh-------hchhhhh
Confidence            12211121111                    01333344445555666555555555555565443       5888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHh
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      +.+...++|+.+++.+.+ ..+..+|+.+|.+.+++.+++.++.+..
T Consensus       387 ~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        387 LTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            887777888887776643 2334579999998888777776665544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.35  E-value=1.3e-10  Score=111.10  Aligned_cols=194  Identities=13%  Similarity=0.083  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHh---ccchHHHHHHH-HHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADA---YAGRFWTITIA-SIIYQ  100 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~---~~GR~~~i~i~-~~l~~  100 (309)
                      +.+....+..++.+-....+++.|+ +++|.+....+.+..+..+...+.+++.|+++||   .+|||+.++++ .+...
T Consensus         7 i~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~   85 (477)
T TIGR01301         7 LRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA   85 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence            3344445555666655566666665 6899999999999999999999999999999995   24999998875 55555


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      ++.+++..+.....+...     ...+.........+.++..+..++.....++..++++|..|++++    +++...++
T Consensus        86 ~~l~ll~~~~~~~~~~~~-----~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~  156 (477)
T TIGR01301        86 FAVILIGFAADIGHLFGD-----NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAY  156 (477)
T ss_pred             HHHHHHHhCchhhhhccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHH
Confidence            555665554311100000     000000011123445556666778888888899999999998741    23678889


Q ss_pred             HHHHHHHHHHHHHHHHHHh--hccc-------------cchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          181 YYFVMGAAILVAVTVLVYI--QDNI-------------GWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i--~~~~-------------gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      .....++|+.+++.++++.  .+..             +.+..|.+.+++.++..++.....+
T Consensus       157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~  219 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVK  219 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            9999999999999887764  1111             4567888877777666655444333

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.34  E-value=2e-10  Score=108.92  Aligned_cols=167  Identities=14%  Similarity=-0.038  Sum_probs=106.9

Q ss_pred             HHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH-Hh
Q 021653           32 VCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI-SA  110 (309)
Q Consensus        32 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~-~~  110 (309)
                      ++....+|++..++|.|+.+++|++..+.+...+....+..++.++.|+++||+ |||+.+.++.++..+..+.... ..
T Consensus       253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~  331 (432)
T PRK10406        253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQ  331 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence            334667888889999999989999998888888887777888888999999996 9999887766544333221211 11


Q ss_pred             hcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHH-HH
Q 021653          111 ILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA-AI  189 (309)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~i-G~  189 (309)
                      .                   ..+....+....+..++.+...+....+.+|.+|++      .|++..++.+...++ ++
T Consensus       332 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~------~r~t~~g~~~~~g~~~~g  386 (432)
T PRK10406        332 N-------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ------VRALGVGLSYAVANALFG  386 (432)
T ss_pred             c-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------ccchhhhHHHHHHHHHHH
Confidence            0                   001121111122222333344456677889999988      699999987765443 34


Q ss_pred             HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          190 LVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       190 ~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      ..+|.+.+.+.....|...+++.++..+++.+..+
T Consensus       387 ~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        387 GSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            45777777665432355555555555555544433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.30  E-value=2.6e-10  Score=103.63  Aligned_cols=162  Identities=11%  Similarity=0.072  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHh--cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQ--LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      ..++..+..++....-.++..+++.|+.+.  +|+++.+++...+.+.++..++.+++++++||+ |+++.+.++..+.+
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~  219 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence            344333333333334456677899999854  799999999999999999999999999999996 99999988887777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      ++.++.....                      .... ..+..+.|++.+...|...+...+.+|++.     .+++  +.
T Consensus       220 ~~~~l~~~~~----------------------~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-----~~as--ai  269 (310)
T TIGR01272       220 LLSIGAALTH----------------------GYVA-MWFVLALGLFNSIMFPTIFSLALNALGRHT-----SQGS--GI  269 (310)
T ss_pred             HHHHHHHHcC----------------------CHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhH--HH
Confidence            7664444322                      1111 235567899999999999988888888652     2333  33


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM  216 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~  216 (309)
                      . ....+|+.+.|.+.|.+.|..|.+.+|+++.++.
T Consensus       270 ~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~  304 (310)
T TIGR01272       270 L-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY  304 (310)
T ss_pred             H-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            3 4567899999999999999889888887665543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.29  E-value=1.4e-10  Score=109.47  Aligned_cols=164  Identities=8%  Similarity=-0.035  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHH-hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHH-HHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT-ITIASIIYQ  100 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~-i~i~~~l~~  100 (309)
                      ..+......++....++++..++|.|+++ ..+.+..+++.......++..++.+++|+++||+ |||+. +.+..++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence            34455566667777788899999999976 3477888888888999999999999999999996 87764 344333333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      ++.++.....                      +....+.+..+.++|.....+.......|.+|++      +|+...++
T Consensus       322 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~a~g~  373 (412)
T TIGR02332       322 AGWLLASATD----------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQ------ARAIAIAV  373 (412)
T ss_pred             HHHHHHHhcC----------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchH------HHHHHHHH
Confidence            3322221111                      1111222222333343333333444446677766      79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHH
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFA  215 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~  215 (309)
                      .+...++|+.++|.+.+.+.+..| |+.+|++.+++
T Consensus       374 ~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       374 INATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999988775 99888876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10504 putative transporter; Provisional

Probab=99.29  E-value=3.5e-10  Score=108.21  Aligned_cols=156  Identities=10%  Similarity=0.039  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      ....+...++..+.+.......+.|++..+|.++.+++.......++..++.++.|+++||+ |||+++.++..+..++.
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~  341 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS  341 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence            34444555555555544455677788878999999999888888888888889999999996 99999998888777766


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      .++....                   .......+.+..++.|+|.+...+....+..+..|++      .++..+++++.
T Consensus       342 ~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~  396 (471)
T PRK10504        342 LLFMLVA-------------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN------LASSGNSLLSM  396 (471)
T ss_pred             HHHHhcc-------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------hccchHHHHHH
Confidence            6555432                   0113333445566778888888888888888888876      68999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccc
Q 021653          184 VMGAAILVAVTVLVYIQDNIGW  205 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~~~gw  205 (309)
                      ...+|..+|+.+.+.+.+..|+
T Consensus       397 ~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        397 IMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999988877655444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.28  E-value=2.8e-10  Score=104.13  Aligned_cols=154  Identities=13%  Similarity=0.102  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhH-HHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFN-TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      ..+......++..+..++.. ..+|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ ||++.+..+..+..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  289 (365)
T TIGR00900       211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGL  289 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Confidence            34444444555555555555 5677777777999999999999999999999999999999996 999998888766666


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +..+.....                    + +.+.+++..++.|++.+...+....+..|.+|++      .|++..+.+
T Consensus       290 ~~~~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~  342 (365)
T TIGR00900       290 AILVVGLTP--------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAE------LLGRVFGAQ  342 (365)
T ss_pred             HHHHHHhhc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHH
Confidence            655555433                    1 2566777888899999999999999999999976      799999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIG  204 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~g  204 (309)
                      +...++|..+++.+.+++.+..|
T Consensus       343 ~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       343 FSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999887643

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.28  E-value=1.1e-10  Score=107.31  Aligned_cols=187  Identities=13%  Similarity=0.054  Sum_probs=137.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      -+..|.+.+..+...-++-++..+++.|++++|+.++.+++.+...+.....+..+++|++|||+ |.+|++.+.....+
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            34567777777777777888899999999999999999999999999999999999999999997 99888888877777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      ++...+....  +..             ..+.+...+++..+.+++..|.-...+..++...+|+       +-|...++
T Consensus       296 ~~~~~l~~~~--~~~-------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-------~~G~v~G~  353 (417)
T COG2223         296 LAAALLSLFL--TGF-------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-------ETGAVTGI  353 (417)
T ss_pred             HHHHHHHccc--ccc-------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-------hhhHHHHH
Confidence            7766666433  000             0011333444434444444444444455555566665       47778888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHHHHHhCcce
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGYPLY  230 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~  230 (309)
                      .....++|++.-|...+...+..| +..+|++.....+++.++.+....|.
T Consensus       354 vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         354 VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888889999888888888888777 88899988888887777665554443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.27  E-value=2.2e-10  Score=108.87  Aligned_cols=175  Identities=13%  Similarity=0.104  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH-
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG-  102 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g-  102 (309)
                      .+.+.+..++.....+++..++|.|+++..|++..+++.....+.+...++.+++|+++||+ |+++....+..+..+. 
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~  331 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVT  331 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHH
Confidence            44444555555666678888999999988999999999988889999999999999999996 7543223333222221 


Q ss_pred             --HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          103 --MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       103 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                        .+.+....                    ..+........+..|++..+..........|.+|++      .|++..++
T Consensus       332 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~  385 (438)
T TIGR00712       332 IAVIVYWMNP--------------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGF  385 (438)
T ss_pred             HHHHHHHhcC--------------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChh------heeeehhh
Confidence              11111110                    002222333334444443332222234567888876      69999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          181 YYFVMGAAI-LVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       181 ~~~~~~iG~-~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      ++...++|+ .++|.+.+.+.+..||..+|++.+++.+++.+..+.
T Consensus       386 ~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       386 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            988878775 689999999999889999988877766666555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.27  E-value=1.6e-09  Score=101.67  Aligned_cols=168  Identities=10%  Similarity=-0.112  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      .+.......+.....+......|.|+.+++|+++.+.+.......++..++.++.|+++||+ |||+.+.++.++..+|.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            34333444444444455556678888888999999888877777778888999999999996 99999999988888887


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      ++.......                 .+.+...++++.++.|+|.+...+..........| +      ++++..+.+++
T Consensus       296 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~------~~g~~~~~~~~  351 (406)
T PRK15402        296 LLAALATVI-----------------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-V------SKGTVSAAMGM  351 (406)
T ss_pred             HHHHHHHHc-----------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-c------cccHHHHHHHH
Confidence            777654311                 01145556777888899988877666555444333 3      68999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Q 021653          184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM  216 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~  216 (309)
                      ...+|..+|+.+.+++-+..++....+...+..
T Consensus       352 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~  384 (406)
T PRK15402        352 LSMLIFTVGIELSKHAYLGGGNGLFNLFNLANG  384 (406)
T ss_pred             HHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence            999999999999999887777665444444333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.26  E-value=6.2e-10  Score=105.25  Aligned_cols=161  Identities=17%  Similarity=0.111  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+.+++..++.....+......+.|.+..++ +....+.+.....+...++.++.++++||+ |||+++.++.++..++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  300 (437)
T TIGR00792       223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG  300 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            44445555555556555544444555554555 455666677777888889999999999996 9999999998888887


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChh-hhhhhhHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNWY  181 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~-~~~~r~~~~~~~  181 (309)
                      .+++.+..                     .+...+++..++.+++.+...+...++.+|..|.++-+ .++++|..++.+
T Consensus       301 ~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  359 (437)
T TIGR00792       301 YLIFFFAG---------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVR  359 (437)
T ss_pred             HHHHHHcc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHH
Confidence            76665432                     14455666677889999998999999999988743211 122579999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccch
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWG  206 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~  206 (309)
                      ++...+|..+++.+.+++.+..||.
T Consensus       360 ~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       360 TFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999888776663

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.26  E-value=1.1e-09  Score=102.02  Aligned_cols=166  Identities=8%  Similarity=-0.020  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+.++...++...........++.|++ +.|++..+.+.+.+....+..+..++.|++.||+ |+++.+.++.++..++
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~  283 (382)
T PRK11128        206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR  283 (382)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence            3444444455555555556677888885 5899999999888888888888889999999996 9999999988888777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      .++.....                      +.+.+++..++.|++.+...+....+..++ +++      ++++..+.+.
T Consensus       284 ~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~  334 (382)
T PRK11128        284 WGLMGSTT----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGS------EVIRLQALYS  334 (382)
T ss_pred             HHHHHhhh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHh------hhHHHHHHHH
Confidence            76665544                      677778888889999988888888887776 333      4577777765


Q ss_pred             -HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 021653          183 -FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       183 -~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~  220 (309)
                       ....+|..+++.+.|++.+.+|+ ..|+..+++.++++
T Consensus       335 ~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        335 ALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence             45677888999999999998887 35555555544443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.25  E-value=2.8e-10  Score=110.20  Aligned_cols=168  Identities=14%  Similarity=0.128  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~  106 (309)
                      ++...++.++....+...+|.+..+.+|.+....|.+.+.+.++..+++++.+.+.+++ ++++.+..+.+++.++.+.+
T Consensus       223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l  301 (524)
T PF05977_consen  223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL  301 (524)
T ss_pred             HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence            33333444444444556678888899999999999999999999999999999999995 99999888888888877777


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHH
Q 021653          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (309)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~  186 (309)
                      .++.                      +.+...+..++.|++.....+......-+..|++      .||+.++.++....
T Consensus       302 al~~----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~------~~GRv~si~~~~~~  353 (524)
T PF05977_consen  302 ALSP----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDW------VRGRVFSIYQMVFF  353 (524)
T ss_pred             hcch----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHhHHHHHHHHHHH
Confidence            7665                      6677777888889988888888888888888887      79999999999999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Q 021653          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       187 iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      .+..+|.++.|.+.+..|-+..+.+.++..+++.++.
T Consensus       354 g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  354 GGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888777665555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.25  E-value=3.4e-10  Score=99.00  Aligned_cols=168  Identities=14%  Similarity=0.043  Sum_probs=131.8

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHH-H
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA-S   96 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~-~   96 (309)
                      +...+..|.+..+.++-..+.+-+.+.-+.++++.+|+|+.+++.+.+...+...+.+++.|.++|++ ||+-..+.+ +
T Consensus       260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~  338 (459)
T KOG4686|consen  260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASAC  338 (459)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHH
Confidence            44567788888888888888877777788999999999999999999999999999999999999998 998665554 4


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhH
Q 021653           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (309)
Q Consensus        97 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  176 (309)
                      +...++-.+++++.                        ..-+.+..+.|+..........+.++-..|++      +.|+
T Consensus       339 ~~tl~~H~~l~Ft~------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~------qLGT  388 (459)
T KOG4686|consen  339 ILTLLGHSGLFFTF------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGT  388 (459)
T ss_pred             HHHHHHhhhHHhhh------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------Hhcc
Confidence            45555666666654                        22356667778777776666777778888887      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccc---chhhhhHHHHHH
Q 021653          177 YFNWYYFVMGAAILVAVTVLVYIQDNIG---WGWGLGIPTFAM  216 (309)
Q Consensus       177 ~~~~~~~~~~iG~~l~~~~~~~i~~~~g---w~~~f~i~~~~~  216 (309)
                      .++..+...|+|-.+.|++++.+.+.-|   |--.|.+....+
T Consensus       389 aygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~  431 (459)
T KOG4686|consen  389 AYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLM  431 (459)
T ss_pred             hHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHH
Confidence            9999999999999999999999987654   444454444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.25  E-value=1.4e-09  Score=105.44  Aligned_cols=178  Identities=14%  Similarity=0.074  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~  104 (309)
                      ..++...++.+++......-++-+++ ++.-|+...+.+.....+-..+.++++|.++||+ .||+.++.+-++..+..+
T Consensus        13 r~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~   90 (524)
T PF05977_consen   13 RRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVAL   90 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHH
Confidence            33345555555554433333444443 5567888888888888999999999999999996 999999999988877666


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH
Q 021653          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (309)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~  184 (309)
                      .+++....                 ...+.+.+++..++.|++.+...|...+++.|..|++      +...+.++....
T Consensus        91 ~L~~l~~~-----------------~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~  147 (524)
T PF05977_consen   91 LLAVLAFF-----------------GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSIS  147 (524)
T ss_pred             HHHHHHHh-----------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHH
Confidence            65544311                 1226788888889999999999999999999999987      688888999999


Q ss_pred             HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhC
Q 021653          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (309)
Q Consensus       185 ~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~  227 (309)
                      .|+...+||.++|.+....|-.+.|.+-++..++.++.+...+
T Consensus       148 ~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~  190 (524)
T PF05977_consen  148 FNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWK  190 (524)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999998888888889888877766555444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.23  E-value=3.7e-10  Score=108.14  Aligned_cols=156  Identities=13%  Similarity=0.084  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+......++..+.+++....+|.|+++.+|+++.+++.......++..++.+++|++.||+ |||+.+.++..+..++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~  334 (485)
T TIGR00711       256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG  334 (485)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence            344445555666677777788899999999999999999999999999999999999999996 9999999988888777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      ..++.... .                 ...+...+....++.|+|.|...++......+..|++      .++...+.++
T Consensus       335 ~~~~~~~~-~-----------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~  390 (485)
T TIGR00711       335 FYWRAFTF-T-----------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPH------KIARGSSLSN  390 (485)
T ss_pred             HHHHhccC-C-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHhHHHHHHH
Confidence            77665321 0                 1114455666678889999988877777777888866      7999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccc
Q 021653          183 FVMGAAILVAVTVLVYIQDNI  203 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~~~~  203 (309)
                      ...++|+.+++.+.+.+.++.
T Consensus       391 ~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       391 FTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.23  E-value=2.5e-10  Score=109.32  Aligned_cols=147  Identities=13%  Similarity=0.104  Sum_probs=120.8

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 021653           50 TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEA  129 (309)
Q Consensus        50 ~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (309)
                      .++.|+...+-+.+.+++.+++.++.+++|.+.||+ .-.+.+....++..+-.++.....                   
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~-------------------  132 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH-------------------  132 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            367788888999999999999999999999999996 866666665555544443444333                   


Q ss_pred             cchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------ccc
Q 021653          130 NKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ------DNI  203 (309)
Q Consensus       130 ~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~------~~~  203 (309)
                         +.+.+++.|+++|+..++.+|+...+++.+|.++      +|+.-+++++.+.++|+++|.++...+.      ...
T Consensus       133 ---s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~  203 (495)
T KOG2533|consen  133 ---SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA  203 (495)
T ss_pred             ---hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence               7888999999999999999999999999999987      7999999999999999999988877653      356


Q ss_pred             cchhhhhHHHHHHHHHHHHHHH
Q 021653          204 GWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       204 gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      |||+.|++.+++.++..++.++
T Consensus       204 gW~~~FiI~G~i~~~~gi~~f~  225 (495)
T KOG2533|consen  204 GWRWLFIIEGVITLVLGIVVFF  225 (495)
T ss_pred             CceeehhHHHHHHHHHHheEEE
Confidence            8999999999887765544433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.23  E-value=1.7e-09  Score=99.94  Aligned_cols=178  Identities=13%  Similarity=0.105  Sum_probs=138.4

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      +..+..+...++...+.|...+++-+|+++..|+|....+++...+.++..++.+++|.++||  +.++++.....+..+
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            456666677777777788888999999999999999999999999999999999999999999  788888888777777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      ..+.+.+..                     .+.....+..++.|++.+........-.++..|+       .+....+++
T Consensus       289 ~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~-------~~~~a~sl~  340 (394)
T COG2814         289 ALLALTFTG---------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPD-------AADLAGSLN  340 (394)
T ss_pred             HHHHHHHhc---------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC-------chHHHHHHH
Confidence            777666544                     1444445555555665555444444444453333       477788888


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcc
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPL  229 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  229 (309)
                      ....|+|..+|.++++.+.+++|+....++.+++.++++++.+...+.
T Consensus       341 ~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         341 VAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            889999999999999999999999999999999888887776655443

>TIGR00895 2A0115 benzoate transport

Probab=99.23  E-value=6.4e-10  Score=102.96  Aligned_cols=147  Identities=14%  Similarity=0.062  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+.+....++....++....+++ ++.+++|++..+.+.+.+...++..++.+++|+++||+ |||+.+....+..+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence            334444445556666666677777 66678999999999999999999999999999999996 9995554444333333


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      .++.....                      +...+++..++.|++.++..+....+.+|.+|++      .|++..++++
T Consensus       329 ~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~  380 (398)
T TIGR00895       329 VLVGSTLF----------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTA------IRATGVGWAI  380 (398)
T ss_pred             HHHHHHhh----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH------HHHHHHHHHH
Confidence            22222122                      4455667778889999999999999999999977      7999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 021653          183 FVMGAAILVAVTVLVYI  199 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i  199 (309)
                      ....+|..++|.+.+++
T Consensus       381 ~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       381 GIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHhHHhc
Confidence            99999999999998865

>TIGR00788 fbt folate/biopterin transporter

Probab=99.23  E-value=1.1e-09  Score=105.05  Aligned_cols=168  Identities=13%  Similarity=0.104  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-----hHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG-----RFWTITIASIIY   99 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~G-----R~~~i~i~~~l~   99 (309)
                      ..+....+.+... +.+...++.++.+++|+++++.+...+...+...+-++ .|+++|++ +     ||+.++++.++.
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHH
Confidence            3344466667776 66777788899999999999999888888888888666 99999996 7     778777777665


Q ss_pred             H-HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653          100 Q-IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus       100 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      . ++...+....                     .......+.+++.+++.+......-++..|..+ +++   +.++...
T Consensus       106 ~~~~~~~l~~~~---------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~  160 (468)
T TIGR00788       106 SAILYGLLPGKV---------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLV  160 (468)
T ss_pred             HHHHHHhccccc---------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCee
Confidence            2 2222221111                     122333346788899999999999999999998 421   2445566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~  220 (309)
                      ++.+.+.++|..+++.+++++.+..+|+..|++.+++.++..
T Consensus       161 s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~  202 (468)
T TIGR00788       161 SWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL  202 (468)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence            677777889999999999999999999999998887776654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.23  E-value=1.7e-10  Score=104.60  Aligned_cols=116  Identities=14%  Similarity=0.127  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHH
Q 021653           56 PLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVA  135 (309)
Q Consensus        56 s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (309)
                      +..-++.+-+.+.++.++.++..|.+||+| |||++++++++...+...+.+.+.                      +..
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~----------------------~F~  122 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR----------------------NFA  122 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH----------------------HHH
Confidence            334578888999999999999999999998 999999999999999888888877                      777


Q ss_pred             HHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021653          136 ILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (309)
Q Consensus       136 ~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~  201 (309)
                      .|.++|++.|+.-|-. ++..++++|.++++      .|+..++....+..+|..+||.+++++..
T Consensus       123 afv~aR~l~Gi~kgnl-~v~rAiisdV~sek------~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  123 AFVLARFLGGIFKGNL-SVIRAIISDVVSEK------YRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHhhhhccCch-HHHHHHHHhhcChh------hccceeeeeehhhhcchhhcchhhhHHHh
Confidence            7788899999988765 46788999999987      69999999999999999999999999877

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.22  E-value=5.3e-10  Score=102.74  Aligned_cols=161  Identities=13%  Similarity=0.112  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH--HHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI--IYQ  100 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~--l~~  100 (309)
                      ..+.+.+..++.....+++..+++.|+.+.+|++..+++...+...++..++.++.|+++||..+||+.......  ...
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            445555556666666677788899999999999999999999999999999999999999985344433222111  111


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      ++........                    ..+...+.+..++.|+..++..+....+..|.+|++      .|++..++
T Consensus       297 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~  350 (379)
T TIGR00881       297 VSLLVYWLNP--------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKK------AAGTAAGF  350 (379)
T ss_pred             HHHHHHhcCc--------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcc------hhHHHHHH
Confidence            1111111100                    113334444455566655555566677889999987      79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhhh
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGL  209 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~gw~~~f  209 (309)
                      ++...++|+.+++.+.+.+.+..||+..|
T Consensus       351 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       351 VGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999998754

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.22  E-value=8.6e-10  Score=105.47  Aligned_cols=178  Identities=16%  Similarity=-0.003  Sum_probs=118.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHH--------H
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT--------I   92 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~--------i   92 (309)
                      ++..+.+.+..++..+.++.+..++|.|+.+.+|++..+.+...+...++..++.+++|+++||+ ++|+.        +
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            34567777777888888888899999999999999999999999999999999999999999995 64421        1


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhh
Q 021653           93 TIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  172 (309)
Q Consensus        93 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~  172 (309)
                      ..+......+..+..... ..                  .+.....+...+.+.+.++..+.......|..|.       
T Consensus       339 ~~~~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------  392 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPY-LS------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-------  392 (465)
T ss_pred             HHHHHHHHHHHHHHHHHH-cC------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-------
Confidence            111111111111111111 00                  0223333334444444444444444444455543       


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---cchhhhhHHHHHHHHHHHHHHH
Q 021653          173 KTWKYFNWYYFVMGAAILVAVTVLVYIQDNI---GWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       173 ~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~---gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      .+|...+..+...++|+.++|.+.+++.+..   +|+..|.+.++..+++.++...
T Consensus       393 ~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       393 FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            5899999999999999999999999887643   4788888887777766655443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.22  E-value=2.6e-09  Score=102.26  Aligned_cols=153  Identities=13%  Similarity=0.044  Sum_probs=107.4

Q ss_pred             HhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccc
Q 021653           48 YLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQ  127 (309)
Q Consensus        48 yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  127 (309)
                      ++.++.|++............+...++.+++|+++||+ |||+.++.+.++..++.+++......+              
T Consensus       296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~--------------  360 (479)
T PRK10077        296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ--------------  360 (479)
T ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC--------------
Confidence            33457888877666666667777888999999999996 999999999998888887776443100              


Q ss_pred             cccchhHHHHHHHHHHHHHhhhcc-hhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------Hhh
Q 021653          128 EANKGQVAILYVSLLLAALGSGGI-RPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV------YIQ  200 (309)
Q Consensus       128 ~~~~~~~~~~~~~~~l~gig~g~~-~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~------~i~  200 (309)
                          ........+.++.+.+.+.. .+....+.+|.+|++      .|+...++.+...++|..+++.+.+      ++.
T Consensus       361 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~  430 (479)
T PRK10077        361 ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA------IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV  430 (479)
T ss_pred             ----cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Confidence                01112233344444444432 366788999999977      7999999998888888888766554      344


Q ss_pred             ccccchhhhhHHHHHHHHHHHHHHH
Q 021653          201 DNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       201 ~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      +..+|+..|++.+++.+++.++.+.
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~  455 (479)
T PRK10077        431 AHFHNGFSYWIYGCMGVLAALFMWK  455 (479)
T ss_pred             hhccCccHHHHHHHHHHHHHHHHHh
Confidence            5778888888877666655554433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.22  E-value=1.4e-09  Score=102.53  Aligned_cols=142  Identities=15%  Similarity=0.047  Sum_probs=103.5

Q ss_pred             HhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021653           39 VGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPP  118 (309)
Q Consensus        39 ~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~  118 (309)
                      +.+..+++.|+++ .|++..+.+...+...++..++.+++|+++||+ |||+.+..+.++..++.+.+....   .    
T Consensus       248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~---~----  318 (426)
T PRK12307        248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP---Q----  318 (426)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc---c----
Confidence            3456678888875 699998888888888889999999999999996 999999888877665544443222   0    


Q ss_pred             CCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021653          119 PCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY  198 (309)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~  198 (309)
                                   .....+.+..+..+.+..+..+..+.++.|.+|++      .|++..+..+...++|+.++|.+.++
T Consensus       319 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~~~~~gp~~~g~  379 (426)
T PRK12307        319 -------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLE------VRGLGTGLIYNLAATSGTFNSMAATW  379 (426)
T ss_pred             -------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHH------HHhhhhhHHHHHHhHHHHHHHHHHHH
Confidence                         01111112122222233334456778889999987      79999999998999999999999999


Q ss_pred             hhccccchhh
Q 021653          199 IQDNIGWGWG  208 (309)
Q Consensus       199 i~~~~gw~~~  208 (309)
                      +.+..|+...
T Consensus       380 l~~~~g~~~~  389 (426)
T PRK12307        380 LGITMGLGAA  389 (426)
T ss_pred             HHHcccHHHH
Confidence            9988876543

>PRK09669 putative symporter YagG; Provisional

Probab=99.22  E-value=5e-10  Score=106.61  Aligned_cols=170  Identities=11%  Similarity=0.127  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc---cchHHH-HHHHHHHHHHHHHH
Q 021653           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWT-ITIASIIYQIGMIC  105 (309)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~---~GR~~~-i~i~~~l~~~g~~~  105 (309)
                      ..+..+..+..+..+++.|+++.+|++...++.+..+..+...+..++.|+++||.   +||||. ++.+.+...+..++
T Consensus        17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l   96 (444)
T PRK09669         17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL   96 (444)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence            34555555666678899999999999999999999999999999999999999993   488554 54565655555544


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHH
Q 021653          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (309)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~  185 (309)
                      +...   |...             .......+++..++.+++..+...+..++.+|+.++.+     +|++..++.....
T Consensus        97 ~f~~---p~~~-------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~~~~  155 (444)
T PRK09669         97 TFYT---PDFG-------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRFALS  155 (444)
T ss_pred             HHhC---CCCC-------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHHHHH
Confidence            3322   2110             11234555555566677777777788889999875532     6888888888888


Q ss_pred             HHHHHHHHHHHHHhhc-------cccchhhhhHHHHHHHHHH
Q 021653          186 GAAILVAVTVLVYIQD-------NIGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       186 ~iG~~l~~~~~~~i~~-------~~gw~~~f~i~~~~~~~~~  220 (309)
                      ++|+.+++.+...+..       ..+|+..+.+.+++..+..
T Consensus       156 ~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~  197 (444)
T PRK09669        156 FIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF  197 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            8888777654433222       2467766666666554443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.22  E-value=2.7e-10  Score=109.94  Aligned_cols=174  Identities=16%  Similarity=0.135  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHHHHHhhHH---HHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNT---NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      |.+.+..++.+...+++..   .+-..++++++.+..+.+++.++......+..++.+.+.||+ |.|.++++|.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            3344444455554444443   244556788999999999999999999999999999999996 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHH-HHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL-LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      |.++..+++                      +.+.+++.. ++.|+|.|..+.+....+...|++       +|+.+.+.
T Consensus       124 g~~lssF~~----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-------kR~lA~Gi  174 (509)
T KOG2504|consen  124 GLLLSSFAT----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-------KRALATGI  174 (509)
T ss_pred             HHHHHHHHh----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-------HHHHHHhh
Confidence            999999998                      788888776 677999999998888888877775       58888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      -..+..+|.++=|.+..++.+.+|||..+++.+.+.+-.++.....+|
T Consensus       175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777888888888888889999999999999988887665555555555

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.21  E-value=9.7e-10  Score=102.88  Aligned_cols=165  Identities=13%  Similarity=0.096  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhc---CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQL---HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~  105 (309)
                      ...++....+......++.|+.+.+   +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++..++..+
T Consensus       222 l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~  300 (396)
T TIGR00882       222 LYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIG  300 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHH
Confidence            3333334444444456778887665   45556677777777888888889999999996 9999999988888887766


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH-HHHH
Q 021653          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-YYFV  184 (309)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-~~~~  184 (309)
                      .....                      +.+.+++...+.|++..........+..+..+++      .+++..+. ++..
T Consensus       301 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~at~~~~~~~~~  352 (396)
T TIGR00882       301 SSFAT----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVR------LSATIYLIGFQFA  352 (396)
T ss_pred             HHhcC----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc------eEEEeehHHHHHH
Confidence            55443                      5566677778888887666656666677777765      45665554 5678


Q ss_pred             HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       185 ~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      ..+|+.+++.+.+++.+..||+.+|.+.+++.++..++
T Consensus       353 ~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       353 KQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999888776665544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.21  E-value=2.3e-09  Score=99.97  Aligned_cols=168  Identities=8%  Similarity=0.020  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~  104 (309)
                      +......++.....+....++++|+.+.+|+++.+.+.+.+...++..++.++.|+++||+ |+++.+.++..+..++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~  280 (382)
T PRK10091        202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL  280 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence            3333333344444445556678888888999999999999999999999999999999996 999999988887777765


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhh-cccCCCChhhhhhhhHHHHHHHH
Q 021653          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGA-DQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~a-d~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      +......                     +.....+..++.++|.++..+....... +..+.+      .++...  .+.
T Consensus       281 ~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~  331 (382)
T PRK10091        281 MLFFFGG---------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE------LLGAAG--GQI  331 (382)
T ss_pred             HHHHHHh---------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch------HHHHHH--HHH
Confidence            5543220                     2333444455556665554444333333 333322      344332  355


Q ss_pred             HHHHHHHHHHHHHHHhhcc-ccchhhhhHHHHHHHHHHHH
Q 021653          184 VMGAAILVAVTVLVYIQDN-IGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~~-~gw~~~f~i~~~~~~~~~~~  222 (309)
                      ..++|..+||.+.+++.+. .+|+..+.+.+++.++....
T Consensus       332 ~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        332 AFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            6789999999999998874 68998888877666554433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.21  E-value=8.4e-10  Score=106.63  Aligned_cols=152  Identities=9%  Similarity=-0.025  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      ........++..+.+++...+++.|+++.+|+++.+++.......++..++.+++|++.||+ |||+.+..+.++..++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~  339 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSF  339 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence            33344455555666677777889999999999999999999999999999999999999996 99999988888887777


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      +++....                   ...+.+......++.|+|.|...+.......+..|++      +++...+.++.
T Consensus       340 ~~l~~~~-------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~g~~~~~~~~  394 (495)
T PRK14995        340 YGLAMTD-------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPE------KAAAAGAIETM  394 (495)
T ss_pred             HHHHHhc-------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH------hcchHHHHHHH
Confidence            6655432                   0113344556678889999998888888888888876      68899999999


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 021653          184 VMGAAILVAVTVLVYIQD  201 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~  201 (309)
                      ..++|+.+|+.+.+.+.+
T Consensus       395 ~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        395 AYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999988877754

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.20  E-value=3.9e-09  Score=97.70  Aligned_cols=159  Identities=11%  Similarity=0.088  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q 021653           28 FSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLT  107 (309)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~  107 (309)
                      .+...+....++....+.+.|+++++|+++.+.+.+.....++..++.++.|+++||+ |||+.+.++..+..++.+++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~  290 (385)
T TIGR00710       212 ALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLE  290 (385)
T ss_pred             HHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445556666778888889999999999999999999999999999999996 999999988888777776665


Q ss_pred             HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHH
Q 021653          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA  187 (309)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~i  187 (309)
                      .....+                 ......++....+.|+|.+...+.......|.+|+       ++++..+.++.....
T Consensus       291 ~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~  346 (385)
T TIGR00710       291 ITAILG-----------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-------VAGTASALFGTLRLV  346 (385)
T ss_pred             HHHHhc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-------cchHHHHHHHHHHHH
Confidence            543100                 01334455556778899998888888888888764       478888887766655


Q ss_pred             HHHHHHHHHHHhhccccchhhhhH
Q 021653          188 AILVAVTVLVYIQDNIGWGWGLGI  211 (309)
Q Consensus       188 G~~l~~~~~~~i~~~~gw~~~f~i  211 (309)
                      ++.+.+.+.+.+.+..+|...+..
T Consensus       347 ~g~i~~~~~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       347 LGAIVGYLVSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHhccccChHHHHHHH
Confidence            444444444555555555544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00896 CynX cyanate transporter

Probab=99.19  E-value=2e-09  Score=99.14  Aligned_cols=153  Identities=10%  Similarity=-0.002  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+.+.....+....++....++|.|++ +.|++..+.+.+.+...++..++.++.|+++||+-+||+.+.++.++..++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  276 (355)
T TIGR00896       198 LAWQVTVFFGLQSGLYYSLIGWLPAILI-SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG  276 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence            3444444455556677777888999986 479999999999999999999999999999999524666777777777777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      .+.+....                      +.... ...++.|+|.|...+.......+..++++     +++...+..+
T Consensus       277 ~~~~~~~~----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~  328 (355)
T TIGR00896       277 LCGLLFAP----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQ  328 (355)
T ss_pred             HHHHHHhh----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHH
Confidence            66665433                      11111 13457789998888877776666555432     5778888878


Q ss_pred             HHHHHHHHHHHHHHHHhhcccc
Q 021653          183 FVMGAAILVAVTVLVYIQDNIG  204 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~~~~g  204 (309)
                      ...++|..++|.+.+++.+..|
T Consensus       329 ~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       329 SIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            7888899999999999988765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.17  E-value=7.6e-09  Score=97.11  Aligned_cols=153  Identities=10%  Similarity=0.170  Sum_probs=104.9

Q ss_pred             HHHHHhHHhcCCCHHHHHHHHHHHH-HHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021653           44 NMISYLTTQLHMPLTKAANTLTNFG-GTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (309)
Q Consensus        44 ~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~  122 (309)
                      ..+.|+.+++|++..+.+.+..... ++..++.+++|++.||+ |||+.+.++.++..+..+........+         
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~---------  300 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP---------  300 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence            3455777789999999988876554 45788899999999996 999988877776655544333222111         


Q ss_pred             ccccccccchhHHHHHHHH----HHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021653          123 EQVCQEANKGQVAILYVSL----LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY  198 (309)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~----~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~  198 (309)
                               .+.+.++...    +..+++.+...+....+..+.+|.+      .++    .+....++|..++..+++.
T Consensus       301 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~l~~~~~~~~~G~  361 (402)
T PRK11902        301 ---------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT------QYA----LLSALASVGRVYVGPTSGY  361 (402)
T ss_pred             ---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH------HHH----HHHHHHHHHHHHHHHHHHH
Confidence                     0333333333    3456667777788888888887754      333    3333445676666668899


Q ss_pred             hhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          199 IQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       199 i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      +.+..||+..|.+.+++.+++.++.+.
T Consensus       362 l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        362 LVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988887777655433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.17  E-value=5.8e-09  Score=97.44  Aligned_cols=174  Identities=15%  Similarity=0.045  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHH-HHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      +..+...++..........+.+.|+.+ .|+++.+.+.+...... ...++.+++|++.||+ |+++.+.++..+..+..
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~  288 (390)
T TIGR02718       211 WSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLA  288 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            333334444445455555667788864 79999999988877654 5567788999999996 99999988776653333


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      +..........                .......+....+.+++.|...+.......+..++++     .+++.++.++.
T Consensus       289 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~  347 (390)
T TIGR02718       289 LLWFAQAAFWL----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQS  347 (390)
T ss_pred             HHHHHHHHccc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHH
Confidence            32222110000                0022233333444556666666666677666665522     68999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHH
Q 021653          184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~  221 (309)
                      ..++|..+++.+.+++.+..||+..|.+.+++.+++.+
T Consensus       348 ~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       348 TRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999999999999989999888887776666543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10133 L-fucose transporter; Provisional

Probab=99.17  E-value=3e-09  Score=101.23  Aligned_cols=161  Identities=14%  Similarity=0.096  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHh-HHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYL-TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLT  107 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~  107 (309)
                      +..++.....++...+++.|+ ++.+|+++.+++.....+.++..++.+++|++.||+ |||+++..+.++..++..+..
T Consensus       265 l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~  343 (438)
T PRK10133        265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISA  343 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555566788886 567899999999999999999999999999999996 999999888777666554443


Q ss_pred             HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHH
Q 021653          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA  187 (309)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~i  187 (309)
                      +..                      +. .-+.+..+.|+|.+...|.......|.++++       .+...+.... ..+
T Consensus       344 ~~~----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l~~~-~~~  392 (438)
T PRK10133        344 FAG----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIVM-TII  392 (438)
T ss_pred             HcC----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhHHhH-Hhc
Confidence            322                      11 1244567789999999999999999998764       2222222222 335


Q ss_pred             HHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHH
Q 021653          188 AILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSII  221 (309)
Q Consensus       188 G~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~  221 (309)
                      |+.+++.+.+.+.+..| -+..|+++.+..+....
T Consensus       393 g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        393 GGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             cchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            77788888999988887 67888877665554443

>PRK09848 glucuronide transporter; Provisional

Probab=99.16  E-value=2e-09  Score=102.53  Aligned_cols=162  Identities=12%  Similarity=0.121  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ......+..++....++......+.|+++.+|.+....+........+..++.++.++++||+ |+|+++.++.++..++
T Consensus       229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~  307 (448)
T PRK09848        229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG  307 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            344444555555565555566667777777887766555444444566777889999999996 9999999999888888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChh-hhhhhhHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNWY  181 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~-~~~~r~~~~~~~  181 (309)
                      .+++.+..                    ..+.+.+++..++.++|.+...+...++.+|..|.++-+ .+++.|..++.+
T Consensus       308 ~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~  367 (448)
T PRK09848        308 YLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF  367 (448)
T ss_pred             HHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence            77766432                    114555667778889999999999999999988865311 122468888999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccc
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGW  205 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw  205 (309)
                      ++...+|..+++.+.+.+.+..|+
T Consensus       368 ~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        368 SFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999888776555554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.16  E-value=1e-08  Score=96.16  Aligned_cols=165  Identities=12%  Similarity=0.031  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH-
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG-  102 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g-  102 (309)
                      .+..+...++.....++...++++++.+++|++..+.+.+.....++..++.++.|++.||. +|+..+. +.++..+. 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~~~  295 (394)
T PRK10213        218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAVSA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHHHH
Confidence            34433444444445555556665555568899999999988888889999999999999994 5544344 33333333 


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      .++.....                      +.+.+.+..++.|++.+...+....++.+..|++       +++..+.++
T Consensus       296 ~~l~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  346 (394)
T PRK10213        296 LVLTLWGS----------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQV  346 (394)
T ss_pred             HHHHHHhh----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHH
Confidence            33333222                      4556667778889999999988888888887743       445556666


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Q 021653          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~  219 (309)
                      ...++|..+|+.+.|++.+..|++..+...+++.++.
T Consensus       347 ~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        347 AVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            6778999999999999999889888887766554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.16  E-value=3.8e-09  Score=100.48  Aligned_cols=185  Identities=11%  Similarity=0.049  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..|.+.+..++....+.+...++|.|+++.+.  ............+...+..+++|+++||+ |+++++.++.++..++
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~  329 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF  329 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence            35666666666666666677789999887663  33333334445677788889999999996 9999999988877766


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCC------C----C-----
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDE------T----D-----  167 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~------~----~-----  167 (309)
                      ........  |.-              ...+...+.++.+.+.++.|.-...+..++.+.||+      +    +     
T Consensus       330 ~~~~~l~l--p~~--------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~  393 (462)
T PRK15034        330 SALLFLTL--PGT--------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQ  393 (462)
T ss_pred             HHHHHHHh--ccc--------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHh
Confidence            54433322  210              112455566655555555555555666666666663      0    0     


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchhhhhHHHHHHHHHHHHHHHh
Q 021653          168 PKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI-GWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       168 ~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~-gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      ...+++-|...++......+|+++-|.+.+...+.. ++..+|+...+..++..++-|..
T Consensus       394 ~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        394 REAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            111235677888888888898999898877665554 47788888777777766665543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.16  E-value=2e-09  Score=113.81  Aligned_cols=162  Identities=10%  Similarity=0.022  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHH-HHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLT-KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      +..++..++..+..+.+..+++.|+.+.+|++.. ..+.+.+...++..++.+++|+++||+ ++++.+.++.++..++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~  313 (1146)
T PRK08633        235 WLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSL  313 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHH
Confidence            3333444444445555677889999999999998 899999999999999999999999996 99998888888777777


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      +++....                      +.+.+++..++.|++.++..+...+++.+..|++      .|++.++.+++
T Consensus       314 ~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~rg~~~~~~~~  365 (1146)
T PRK08633        314 FLLPTAP----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK------ELGKVLAANNF  365 (1146)
T ss_pred             HHHHHhh----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc------chhhhhHHHHH
Confidence            6666544                      5566777778889999998888899999999987      69999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc-cccchhhhhHHHHH
Q 021653          184 VMGAAILVAVTVLVYIQD-NIGWGWGLGIPTFA  215 (309)
Q Consensus       184 ~~~iG~~l~~~~~~~i~~-~~gw~~~f~i~~~~  215 (309)
                      ..++|..+++.+.+.+.. .+++...|++.+.+
T Consensus       366 ~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        366 LQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999998887776665543 23444455444433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.14  E-value=8.4e-09  Score=97.61  Aligned_cols=156  Identities=12%  Similarity=0.056  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR-FWTITIASIIYQIGMICLT  107 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR-~~~i~i~~~l~~~g~~~~~  107 (309)
                      +..++....+-.....++.|+++++|++..+.+++.+.+.++..+++++.|.++||+ || |+++.++.++..++..+..
T Consensus         9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889         9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHH
Confidence            334444444444567889999999999999999999999999999999999999996 65 7788877777666666555


Q ss_pred             HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhh----h----cccCCCChhhhhhhhHHHH
Q 021653          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFG----A----DQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~----a----d~~~~~~~~~~~~r~~~~~  179 (309)
                      +..                      +.+.+++.+.+.+++.+...+...+..    +    |.....      .|.+.++
T Consensus        88 ~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~------~~~r~~G  139 (418)
T TIGR00889        88 QVT----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDF------PPIRVMG  139 (418)
T ss_pred             Hhc----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcC------CCeeeeh
Confidence            544                      566777788888887666555444332    1    211111      2333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~  220 (309)
                            .+|..+++.+.+.+.....|. +|++.+++.++..
T Consensus       140 ------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~  173 (418)
T TIGR00889       140 ------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG  173 (418)
T ss_pred             ------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence                  367888888888774333344 4555555444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.14  E-value=1.6e-09  Score=104.76  Aligned_cols=165  Identities=17%  Similarity=0.107  Sum_probs=104.9

Q ss_pred             HHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHH------------HHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH
Q 021653           31 EVCEKLAVVGFNTNMISYLTTQLHMPLTKAAN------------TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (309)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~------------~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l   98 (309)
                      .++..+.+|++..++|.+++ +.|++..+++.            .......+..++.+++++++||+ |||++++++..+
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~  374 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFI  374 (502)
T ss_pred             HHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHH
Confidence            34455677888888888885 56775432111            12223345556778899999996 999999888877


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      ..++..++......                 .. +...+....+...++..+..+....+.+|.+|.+      .|++..
T Consensus       375 ~~~~~~~l~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~------~R~~~~  430 (502)
T TIGR00887       375 LTVLFFVLGFAYNH-----------------LS-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTR------YRSTAH  430 (502)
T ss_pred             HHHHHHHHHHHHHh-----------------cc-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchh------HHHHHH
Confidence            77666555543200                 00 1111111111122222233445667789999998      799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc----------ccchhhhhHHHHHHHHHHH
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQDN----------IGWGWGLGIPTFAMFLSII  221 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~~~----------~gw~~~f~i~~~~~~~~~~  221 (309)
                      ++.+....+|+++++.+.+++.+.          .++...|++.+++.+++.+
T Consensus       431 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       431 GISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             HHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            999999999999999999988763          3344566666666555543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.14  E-value=2.7e-09  Score=101.07  Aligned_cols=163  Identities=17%  Similarity=0.155  Sum_probs=131.2

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      |....+++..++..++.......++.|.+..+|.+ ...+.+..+..+...++.++.++++||+ |||+++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            55666667777777777767777778888778877 4556667778888899999999999996 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChh-hhhhhhHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNW  180 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~-~~~~r~~~~~~  180 (309)
                      +.+++.+..                    ..+.+.+++..++.|+|.|.......++.+|..+.++.+ ++++.|..++.
T Consensus       303 ~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~  362 (428)
T PF13347_consen  303 GFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSV  362 (428)
T ss_pred             HHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHh
Confidence            988887764                    126788888889999999999999999999999865322 23457888999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccch
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIGWG  206 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~gw~  206 (309)
                      +.+...+|..++..+.+.+.+..|+.
T Consensus       363 ~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  363 NSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            99999999999998888776554443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.13  E-value=2.8e-09  Score=102.42  Aligned_cols=169  Identities=9%  Similarity=0.034  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH----hccch-HHHHHHHHHHHHHHHH
Q 021653           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD----AYAGR-FWTITIASIIYQIGMI  104 (309)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD----~~~GR-~~~i~i~~~l~~~g~~  104 (309)
                      ..+..++.+..+..+++.|+++.+|+++..++.+..+..+.-.+..++.|+++|    | +|| |+-++++.+...++..
T Consensus        14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHH
Confidence            345556666677788999999999999999999999999999999999999999    5 498 5556666666666655


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH
Q 021653          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (309)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~  184 (309)
                      ++...   |..             +.......+++..++.+++......+..++.+|..++.+     +|.+..++-...
T Consensus        93 llf~~---p~~-------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~~  151 (473)
T PRK10429         93 LLFSA---HLF-------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRFF  151 (473)
T ss_pred             HHHcC---CCC-------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHHH
Confidence            55321   110             011133344455556678888888888899999875443     788888876666


Q ss_pred             HHHHHHHHHHHHHHhhc-------cccchhhhhHHHHHHHHHH
Q 021653          185 MGAAILVAVTVLVYIQD-------NIGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       185 ~~iG~~l~~~~~~~i~~-------~~gw~~~f~i~~~~~~~~~  220 (309)
                      .++|+.+.+.+...+.+       ..+|+....+.+++.++..
T Consensus       152 ~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~  194 (473)
T PRK10429        152 ASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST  194 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            77776665444332211       1245554445544444433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.12  E-value=1.9e-09  Score=99.36  Aligned_cols=172  Identities=14%  Similarity=0.150  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      .+...++..++-+=....+.+....|..+++|++..+...+....+..+.++++++|+|.||+ |-|+++.++.+++.+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence            555555555555555556677778899999999999999999999999999999999999995 9999999999988877


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      .+...+..                      ....+.+.-++.|+..|+.++..=.+.++..|++      +-+++|+.|.
T Consensus       332 ~~~~~~~~----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~------k~~~fFglya  383 (438)
T COG2270         332 ALYLIFLE----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKG------KEGRFFGLYA  383 (438)
T ss_pred             HHHHHHcc----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCc------cccceeehhh
Confidence            76666544                      3444556667889999999999999999999988      7899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHHH
Q 021653          183 FVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~~~  223 (309)
                      +.....+.+||+..+.+.+..| -|.++....++..++++++
T Consensus       384 ltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         384 LTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            9999999999999888877655 6677776666666666554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.11  E-value=3.9e-09  Score=95.49  Aligned_cols=168  Identities=14%  Similarity=0.110  Sum_probs=117.8

Q ss_pred             hhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021653           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (309)
Q Consensus        40 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~  119 (309)
                      .....+.+-+....+++..++..+......+..+++...|.++|+. |||+...+..+..++...+-..+.         
T Consensus        95 m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~sp---------  164 (528)
T KOG0253|consen   95 MLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASP---------  164 (528)
T ss_pred             HHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCC---------
Confidence            3344444555667788889999999999999999999999999996 999988877665544433333332         


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021653          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (309)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i  199 (309)
                                   +...+.+.|.+.|+|.|+ .|...++-.|-.|..      +|....-.. ....+|......+.-.+
T Consensus       165 -------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~------~r~~~~V~~-~~waig~v~ea~law~v  223 (528)
T KOG0253|consen  165 -------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSS------HRWLLTVMS-FFWAIGQVFEALLAWGV  223 (528)
T ss_pred             -------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCc------CCCcchhHH-HHHHHHHHHHHHHHHHH
Confidence                         677788999999999999 777778888988876      344433332 44567777776666666


Q ss_pred             hccccchhhhhHHHHHHHHH-HH-HHHHhCcceeccCCCCC
Q 021653          200 QDNIGWGWGLGIPTFAMFLS-II-AFLIGYPLYRNLDPAGS  238 (309)
Q Consensus       200 ~~~~gw~~~f~i~~~~~~~~-~~-~~~~~~~~~~~~~~~~~  238 (309)
                      ..+.|||+-+........+. .. ....++|||..-+.+..
T Consensus       224 m~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~  264 (528)
T KOG0253|consen  224 MSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDY  264 (528)
T ss_pred             HHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChH
Confidence            67889998766655433332 22 23456778765544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.10  E-value=6.6e-09  Score=97.66  Aligned_cols=153  Identities=8%  Similarity=-0.043  Sum_probs=107.8

Q ss_pred             hHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 021653           41 FNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC  120 (309)
Q Consensus        41 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~  120 (309)
                      ....+|.|+++..+ ++.+.+.+.+....+...+....+++.|+.++.++.+..+.++..++.+++....          
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----------  295 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----------  295 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence            34567888876555 6677777766666555545555566666544767777777777777766665544          


Q ss_pred             CCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021653          121 EGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (309)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~  200 (309)
                                  +...+.+...+.++|.+...+....+..|..|++      +|++..+.++...++|..+||.+.+++.
T Consensus       296 ------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~ig~~l~G~l~  357 (400)
T PRK11646        296 ------------NLQQLFTLICLFYIGSIIAEPARETLSASLADAR------ARGSYMGFSRLGLALGGAIGYIGGGWLF  357 (400)
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc------cchhhhhHHHHHHHHHHHhcccchHHHH
Confidence                        4455556667778888888888889999999987      7999999999999999999999999988


Q ss_pred             ccc---c-chhhhhHHHHHHHHHHHH
Q 021653          201 DNI---G-WGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       201 ~~~---g-w~~~f~i~~~~~~~~~~~  222 (309)
                      +..   + ....+++..++.+++.+.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        358 DLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            764   2 234555544444444433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.10  E-value=2.1e-08  Score=93.72  Aligned_cols=176  Identities=11%  Similarity=-0.064  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHH--HHHHHHHHhHHHHH-HHHHHhccchHHHHHHHHHHHHH
Q 021653           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL--TNFGGTGSLTPLIG-AFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        25 ~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~--~~~~~~~~~~~l~~-G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      ..+....+.+.+.+......+|.|++ +.|+|..+.+...  ......-.+.+++. ++.+||+ ||||.+++.+.+...
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~   81 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVS   81 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHH
Confidence            34445566666666666677888875 6699999999863  44566665556555 6688985 999997666533222


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      . .+...+...+.                ......+.....+.++..+...+....+..|..+++      +++...+..
T Consensus        82 ~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~------~~~~~~~~~  138 (390)
T TIGR02718        82 A-CLASLALVGPD----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGR------TLAKGNAVQ  138 (390)
T ss_pred             H-HHHHHHcCCcc----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhhHHHHHH
Confidence            1 12222110010                012223333344455666666666776777776654      567777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      .++..+|..++..+.+++.+..||+..|++.+++.++..+..+.
T Consensus       139 ~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       139 IAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            77888999999988889999999999999988877665554433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.10  E-value=3.1e-09  Score=112.43  Aligned_cols=182  Identities=10%  Similarity=-0.010  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      .++.+++..++..+..+.+..++|.|+++.+|.+....+.+.+.+.++..++.++.|+++|++ ++++.+..+.++..++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~  304 (1140)
T PRK06814        226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF  304 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence            445555555566666667778899999999999999999999999999999999999999986 6666555555544444


Q ss_pred             HHHHHHHhhcCCCCCCC--CCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          103 MICLTISAILPQLRPPP--CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      .+.+.+.. ........  +.....+   ...+.+.++++.++.|++.+...+...+++.+..|++      .+|+.++.
T Consensus       305 ~~~l~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~G~v~g~  374 (1140)
T PRK06814        305 GLDLAFAS-SSVPAEPAQLKSILVFL---SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPA------HRARVIAA  374 (1140)
T ss_pred             HHHHHhcc-cccccccccccchhhhh---cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc------cceeeeHH
Confidence            44333320 00000000  0000000   0014456677788889999999999999999999988      79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-cccchhhhhHHHHH
Q 021653          181 YYFVMGAAILVAVTVLVYIQD-NIGWGWGLGIPTFA  215 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~-~~gw~~~f~i~~~~  215 (309)
                      ++...++|..+++++.+.+.+ ..++...+++.+++
T Consensus       375 ~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        375 NNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999999999888863 44555555544443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.10  E-value=6.6e-09  Score=99.86  Aligned_cols=165  Identities=14%  Similarity=0.076  Sum_probs=114.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      |....+++..++.....+......+.|++..++ +....+.+.+...+...++.++.++++||+ |||+++.++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            555556666666666655555555444443333 445555566666677888889999999996 999999988887777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCC-hhhhhhhhHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETD-PKQATKTWKYFNW  180 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~-~~~~~~r~~~~~~  180 (309)
                      +.+........+                 ..+.+.+++..++.+++.+...+...++++|..|.++ +.++++.|..++.
T Consensus       309 ~~~~~~~~~~~~-----------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~  371 (473)
T PRK10429        309 SCGVLLLMGLAA-----------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSV  371 (473)
T ss_pred             HHHHHHHHhccC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHH
Confidence            766554432111                 1145566667778899999999999999999988542 1223356778889


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccc
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIGW  205 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~gw  205 (309)
                      +.+...+|..+++.+.+++.+..|+
T Consensus       372 ~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        372 QTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999988887665555

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.09  E-value=4e-10  Score=104.39  Aligned_cols=176  Identities=14%  Similarity=0.052  Sum_probs=119.2

Q ss_pred             CccHHHHHHHHHHHHHHHH---HhhHHHHHHHhHHh-------cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchH
Q 021653           20 GMITMPFIFSNEVCEKLAV---VGFNTNMISYLTTQ-------LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF   89 (309)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~---~~~~~~l~~yl~~~-------~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~   89 (309)
                      +|+-+..+++..+....-.   +.+....+.+-.--       =|+++...+.+..+..++..+++++.||++|++ |||
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK  114 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRK  114 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Confidence            7887777666544433322   22222222221111       136777888889999999999999999999996 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChh
Q 021653           90 WTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK  169 (309)
Q Consensus        90 ~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~  169 (309)
                      +++...+++.+++.+++.++.               |..+...-...+...|+++|+|.|+-+|...+..+|..-.+   
T Consensus       115 ~vYG~~liImIi~t~~~~~s~---------------~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~---  176 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSV---------------GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK---  176 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCC---------------CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc---
Confidence            999999999999998555433               22223346677889999999999999999999999987776   


Q ss_pred             hhhhhhHHHHHHHHH----HHHHHHHHHHHHHHhhcc-----------ccchhhhhHHHHHHH
Q 021653          170 QATKTWKYFNWYYFV----MGAAILVAVTVLVYIQDN-----------IGWGWGLGIPTFAMF  217 (309)
Q Consensus       170 ~~~~r~~~~~~~~~~----~~iG~~l~~~~~~~i~~~-----------~gw~~~f~i~~~~~~  217 (309)
                         +||.+.++....    +-.|+.++.++..-....           .-||..|.+.++..+
T Consensus       177 ---~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~  236 (538)
T KOG0252|consen  177 ---TRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPAL  236 (538)
T ss_pred             ---cccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence               687777654444    444444444443333221           238877776655443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.08  E-value=5.2e-10  Score=106.00  Aligned_cols=178  Identities=12%  Similarity=0.104  Sum_probs=126.4

Q ss_pred             HHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH----hccchHHHHH-HHHHHHHHHHHHH
Q 021653           32 VCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD----AYAGRFWTIT-IASIIYQIGMICL  106 (309)
Q Consensus        32 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD----~~~GR~~~i~-i~~~l~~~g~~~~  106 (309)
                      +..++.+.....+++.|+++.+|+++...+.+..+..+...+..|+.|.++|    | +||||..+ ++.++..++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence            4455555556678899999999999999999999999999999999999999    6 49776544 6777777777666


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHH
Q 021653          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (309)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~  186 (309)
                      ....  |.            +.+.......+.+..++..++......+..++.+|..++.+     +|.+..++-.....
T Consensus        90 f~~~--p~------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~  150 (428)
T PF13347_consen   90 FSPP--PA------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSM  150 (428)
T ss_pred             hccc--cc------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHH
Confidence            6431  10            00111133344566667789999999999999999988654     78888888888888


Q ss_pred             HHHHHHHHHHHHhhccc-------cchhhhhHHHHHHHHHHHHHHHhCcc
Q 021653          187 AAILVAVTVLVYIQDNI-------GWGWGLGIPTFAMFLSIIAFLIGYPL  229 (309)
Q Consensus       187 iG~~l~~~~~~~i~~~~-------gw~~~f~i~~~~~~~~~~~~~~~~~~  229 (309)
                      +|.++...+.+.+.+..       +|++...+.+++.++..++.....++
T Consensus       151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            88876555544433211       57777777777666655555444444

>PRK10054 putative transporter; Provisional

Probab=99.08  E-value=5.8e-09  Score=97.91  Aligned_cols=172  Identities=11%  Similarity=-0.001  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHh--cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQ--LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      .+...+..++..+.......+++.|+...  .+.+....+.+............++.|.+.||+ |+|+.+.++.++..+
T Consensus       208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~  286 (395)
T PRK10054        208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVI  286 (395)
T ss_pred             ehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHH
Confidence            34444444555544444445666666543  345555666666666666666778889999996 999999999888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +.+.+....                     .+.+.+.+...+.++|.+...+....++.+..|++      .+++.++.+
T Consensus       287 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~------~~~~~~~~~  339 (395)
T PRK10054        287 GLVGFIFSG---------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPG------MKASYFSAQ  339 (395)
T ss_pred             HHHHHHHcc---------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc------cceehHhHH
Confidence            877665432                     14455666778889998888888888888988876      677777765


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      + ...+|..++|.+.+++.+..|....|++.++...++.++..
T Consensus       340 ~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        340 S-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            4 56689999999999999999888888776666555544433

>PRK11462 putative transporter; Provisional

Probab=99.06  E-value=1.7e-08  Score=96.64  Aligned_cols=171  Identities=12%  Similarity=0.208  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHh---ccchHHHHH-HHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADA---YAGRFWTIT-IASIIYQIGMI  104 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~---~~GR~~~i~-i~~~l~~~g~~  104 (309)
                      ...+..++.+..+..++..|+++.+|+++..++.+..+.-+.-.+.-|+.|.++||   .+||||..+ ++.+...++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            34455566666677789999999999999999999999999999999999999997   369876555 45566666655


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH
Q 021653          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (309)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~  184 (309)
                      ++...   |..             +.......+++.-++..++..+...+..++.+|..++.+     +|++..++...+
T Consensus        96 llf~~---p~~-------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~  154 (460)
T PRK11462         96 LAYST---PDL-------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVL  154 (460)
T ss_pred             HHHhC---CCC-------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHH
Confidence            54422   211             011123344455566688888888888899999987644     799999999888


Q ss_pred             HHHHHHHHHHHHHHhhcc-------ccchhhhhHHHHHHHHHH
Q 021653          185 MGAAILVAVTVLVYIQDN-------IGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       185 ~~iG~~l~~~~~~~i~~~-------~gw~~~f~i~~~~~~~~~  220 (309)
                      .++|..+++.+...+...       .+|+....+.+++.++..
T Consensus       155 ~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        155 ATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            888887776664433322       246655555555444433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.06  E-value=3.4e-08  Score=89.69  Aligned_cols=151  Identities=13%  Similarity=0.126  Sum_probs=104.7

Q ss_pred             hHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccc
Q 021653           49 LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQE  128 (309)
Q Consensus        49 l~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (309)
                      +.+++|++..+.+.+...-.+...+...+.|.++||+ |||+..++.++++.++.+... +.                  
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~~------------------  119 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-SS------------------  119 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-cc------------------
Confidence            3367999999999999999999999999999999997 999999999999988876433 22                  


Q ss_pred             ccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhhccccc--
Q 021653          129 ANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY-FVMGAAILVAVTVLVYIQDNIGW--  205 (309)
Q Consensus       129 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~-~~~~iG~~l~~~~~~~i~~~~gw--  205 (309)
                          ++..++++|++.|+++....++--+.......+++- .+...+..++... +...+-++++-+++.++.+..+.  
T Consensus       120 ----~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~-~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~  194 (354)
T PF05631_consen  120 ----NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGF-PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP  194 (354)
T ss_pred             ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC
Confidence                678899999999999999988877766444333221 1113344443322 22222233333444455555554  


Q ss_pred             hhhhhHHHHHHHHHHHHHH
Q 021653          206 GWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       206 ~~~f~i~~~~~~~~~~~~~  224 (309)
                      ..+|.....+.+++.++..
T Consensus       195 vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  195 VAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             cchHHHHHHHHHHHHHHHH
Confidence            5788877777766665543

>TIGR00901 2A0125 AmpG-related permease

Probab=99.06  E-value=7.7e-09  Score=95.21  Aligned_cols=144  Identities=13%  Similarity=0.055  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHH-HHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFG-GTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      .+.+++..++..+.++.....++.|+++ +|++..+.+.+.+... ....++.+++|+++||+ |||+.+.+++++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            5555555666677778888889999986 9999999888777655 56778899999999996 9999999888877776


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      ..+.....+....         .+  ....+.+.+....++.+++.+...+...++..|.+|++      +||+.++.++
T Consensus       289 ~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~  351 (356)
T TIGR00901       289 NAGFVWLASNGHH---------DG--ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPK------FGATQMALLS  351 (356)
T ss_pred             HHHHHHHHhcCcc---------cc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC------ccHHHHHHHH
Confidence            6655443200000         00  00014455666777889999999999999999999998      7999999876


Q ss_pred             HHHH
Q 021653          183 FVMG  186 (309)
Q Consensus       183 ~~~~  186 (309)
                      ...+
T Consensus       352 ~~~~  355 (356)
T TIGR00901       352 SLSA  355 (356)
T ss_pred             HHHh
Confidence            6544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.05  E-value=2.4e-08  Score=90.33  Aligned_cols=155  Identities=17%  Similarity=0.219  Sum_probs=135.5

Q ss_pred             HHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 021653           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (309)
Q Consensus        44 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  123 (309)
                      .+..-.++++|+|.+.++.+++.-.++..+.+++..+++.|+ |-.+.+..+.++..+|.++-...              
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~--------------   97 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG--------------   97 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc--------------
Confidence            455667789999999999999999999999999999999995 99999999999988888776643              


Q ss_pred             cccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021653          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (309)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~  203 (309)
                               +...++.+-.+.|.|.+......|..+-+-||++       -+...+.|..+.++|+.+++.+...+.++.
T Consensus        98 ---------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~  161 (395)
T COG2807          98 ---------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHS  161 (395)
T ss_pred             ---------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence                     4566888899999999999999999999999974       888999999999999999999988887766


Q ss_pred             -cchhhhhHHHHHHHHHHHHHHHhCcc
Q 021653          204 -GWGWGLGIPTFAMFLSIIAFLIGYPL  229 (309)
Q Consensus       204 -gw~~~f~i~~~~~~~~~~~~~~~~~~  229 (309)
                       ||+.....-+...++++++.++-..|
T Consensus       162 ~gW~~aL~~WAl~allAl~~WlPq~~r  188 (395)
T COG2807         162 GGWRGALGFWALLALLALLIWLPQALR  188 (395)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhhccc
Confidence             79999999888888888777765333

>PRK09848 glucuronide transporter; Provisional

Probab=99.02  E-value=2.8e-08  Score=94.70  Aligned_cols=149  Identities=12%  Similarity=0.066  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc---cchHHHH-HHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWTI-TIASIIYQIGMI  104 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~---~GR~~~i-~i~~~l~~~g~~  104 (309)
                      +..+..+..+..+..+++.|+++.+|++..+++.+.....+...+..++.|+++||.   +|||+.+ .++.+...+..+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            345556666666677788899999999999999999999999999999999999994   4777755 455554444333


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH
Q 021653          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (309)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~  184 (309)
                      ++.. .  |.            ..+.......+++...+.+++.+...++..++..+..++.+     +|....++-.++
T Consensus        95 ~~~~-~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~~~~r~~~  154 (448)
T PRK09848         95 LVFW-V--PT------------DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARLGAARGIA  154 (448)
T ss_pred             HHHh-C--cC------------CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHHHHHHHHH
Confidence            3321 1  10            00011123334445567788888888777777777665532     566665555443


Q ss_pred             H-----HHHHHHHHHHHH
Q 021653          185 M-----GAAILVAVTVLV  197 (309)
Q Consensus       185 ~-----~iG~~l~~~~~~  197 (309)
                      .     .+|..++|.+.+
T Consensus       155 ~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        155 ASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            3     344445555544

>TIGR00898 2A0119 cation transport protein

Probab=99.00  E-value=1.1e-08  Score=98.69  Aligned_cols=141  Identities=11%  Similarity=0.012  Sum_probs=98.6

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 021653           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (309)
Q Consensus        51 ~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (309)
                      ..++.+.....   ....+....+.+++++++||+ |||+.+.++.++..++.+++....   .                
T Consensus       351 ~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~---~----------------  407 (505)
T TIGR00898       351 GNLGGNIYLDL---FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP---V----------------  407 (505)
T ss_pred             cccCCChHHHH---HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC---C----------------
Confidence            34555543322   234455667788999999996 999999999888777766655433   0                


Q ss_pred             chhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhh
Q 021653          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLG  210 (309)
Q Consensus       131 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~  210 (309)
                       .......+..++.+++.++..+....+.+|.+|++      .|+...++.+....+|+.++|.+.+ +. ..++..++.
T Consensus       408 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~  478 (505)
T TIGR00898       408 -DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV------VRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLV  478 (505)
T ss_pred             -CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH------HHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHH
Confidence             01233334445566677777788889999999987      7999999999999999999999888 43 345666777


Q ss_pred             HHHHHHHHHHHHH
Q 021653          211 IPTFAMFLSIIAF  223 (309)
Q Consensus       211 i~~~~~~~~~~~~  223 (309)
                      +.+++.+++.++.
T Consensus       479 ~~~~~~~~~~~~~  491 (505)
T TIGR00898       479 LFGGLALLAGILT  491 (505)
T ss_pred             HHHHHHHHHHHHH
Confidence            7666655554433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.99  E-value=7e-08  Score=90.52  Aligned_cols=154  Identities=10%  Similarity=0.037  Sum_probs=111.4

Q ss_pred             HHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 021653           37 AVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLR  116 (309)
Q Consensus        37 ~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~  116 (309)
                      ........++.|+++.+|.++.+.+.+.....++..+++++.+++.|++ ++++.+..+..+ .+....+....      
T Consensus       220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~~------  291 (393)
T PRK11195        220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQH------  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHHh------
Confidence            3344445567788888999999999999999999999999999999996 999888777533 22222233222      


Q ss_pred             CCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021653          117 PPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (309)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~  196 (309)
                                      +.+...+..++.|++.+...++......+..|++.     .+|+.++..++..++|..++..+.
T Consensus       292 ----------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~  350 (393)
T PRK11195        292 ----------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGLY  350 (393)
T ss_pred             ----------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHHH
Confidence                            44555566678889888888777777777655431     378999999999999999998887


Q ss_pred             HHhhccccchhhhhHHHHHHHHHH
Q 021653          197 VYIQDNIGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       197 ~~i~~~~gw~~~f~i~~~~~~~~~  220 (309)
                      +.+ +..|-+..+.+..+..++.+
T Consensus       351 ~~~-~~~~~~~~~~~~~~~~~~~~  373 (393)
T PRK11195        351 SLL-VKLGVPVVAVIVGFGLLVAL  373 (393)
T ss_pred             HHH-HHcCCCHHHHHHHHHHHHHH
Confidence            755 45676666665554444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.99  E-value=1.2e-08  Score=92.88  Aligned_cols=141  Identities=17%  Similarity=0.248  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHhcCCC-HHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMP-LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~  105 (309)
                      ++...++..+.++....+++.|+.+.+|++ ..+.+.+.+...+...++.++.|+++||+ |+++.+.+......++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence            334444445566667888999989999999 78999999999999999999999999996 9988888777777666665


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHH
Q 021653          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (309)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~  185 (309)
                      +.....                   ..+....++..++.|++.+...+....+..|.+|++      ++++..+.++...
T Consensus       290 ~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~  344 (352)
T PF07690_consen  290 LLLLPF-------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPE------YRGTAFGLFNSIG  344 (352)
T ss_dssp             HCCSHH-------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTC------HHHHHHHHHHHHH
T ss_pred             HHHHHH-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHH
Confidence            554331                   114556666778899999999999999999999887      7999999999999


Q ss_pred             HHHHHHHH
Q 021653          186 GAAILVAV  193 (309)
Q Consensus       186 ~iG~~l~~  193 (309)
                      ++|+.++|
T Consensus       345 ~~~~~igP  352 (352)
T PF07690_consen  345 SLGGIIGP  352 (352)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHCC
Confidence            99999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.99  E-value=9.2e-08  Score=86.65  Aligned_cols=169  Identities=16%  Similarity=0.108  Sum_probs=134.2

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      +..|.+.+..-++++.+|.+..++|.++. +.|+|..+++..++..........+.+-.+++|.-.+|+.....+..+.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            34677777788899999999999999986 77999999999999999999999999999999766889988888888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      |.+.+.+..   .                  +...+.  .+++|+|.|+..+....++.+..++.+     +-++..+.-
T Consensus       287 G~~G~~~~P---~------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~LSgma  338 (395)
T COG2807         287 GLVGLLLAP---G------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA-----IAAALSGMA  338 (395)
T ss_pred             HHHHHHHhh---h------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH-----HHHHHHHHh
Confidence            888777544   1                  222222  488999999999999999988776543     566666666


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHH
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLS  219 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~  219 (309)
                      +....+=+..||++.|++-|..| |+..+...+.+.++.
T Consensus       339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m  377 (395)
T COG2807         339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLM  377 (395)
T ss_pred             hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHH
Confidence            66666667789999999988764 877766655544433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.98  E-value=4.8e-08  Score=90.95  Aligned_cols=165  Identities=10%  Similarity=-0.062  Sum_probs=107.1

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchH---HHHHH-HHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF---WTITI-ASI   97 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~---~~i~i-~~~   97 (309)
                      +..+.+....++....+|++..++|.|++ +.|++.. .+...........   +..++++||. .||   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence            44566767788888889999999999996 4678764 4444444444333   4457888885 543   33222 222


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHH
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  177 (309)
                      +..++........                      +.....+...+.+++.+...+...++.+|.+|++      .|++.
T Consensus       266 ~~a~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~rgt~  317 (368)
T TIGR00903       266 LIAAFFLALAFEL----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE------LHGKA  317 (368)
T ss_pred             HHHHHHHHHHHcc----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh------hcCcc
Confidence            2222222222221                      2222333445556667777777888999999998      79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       178 ~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      .++.+...++|+..+|.+.+.+..  +-...|.+.++..+++.+.
T Consensus       318 ~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~  360 (368)
T TIGR00903       318 AGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAI  360 (368)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988877663  5555666666555554444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.98  E-value=1.5e-07  Score=87.19  Aligned_cols=142  Identities=13%  Similarity=-0.050  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~  108 (309)
                      +...+.....+....+.+.++.+.+|+++.+.+.......++..++.+++|+++||+ |||+.+.++..+..+..+.+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~  279 (377)
T PRK11102        201 LASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLVV  279 (377)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555667788888999999999999999999999999999999996 9999999888765544333332


Q ss_pred             HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH-HHH
Q 021653          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV-MGA  187 (309)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~-~~i  187 (309)
                      ....                  +...+.+.++..+.+.+.+...+....+..|..|+       .+++..+.+... ..+
T Consensus       280 ~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~  334 (377)
T PRK11102        280 SALL------------------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-------MAGTASSLAGTLRFGI  334 (377)
T ss_pred             HHHH------------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-------cchHHHHHHHHHHHHH
Confidence            2200                  01333344444444555555555556667777663       467777665443 345


Q ss_pred             HHHHHHHHH
Q 021653          188 AILVAVTVL  196 (309)
Q Consensus       188 G~~l~~~~~  196 (309)
                      |+.+++.+.
T Consensus       335 g~~~g~~~~  343 (377)
T PRK11102        335 GAIVGALLS  343 (377)
T ss_pred             HHHHHHHHH
Confidence            666665543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.95  E-value=1.8e-08  Score=97.33  Aligned_cols=176  Identities=16%  Similarity=0.155  Sum_probs=141.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc--hHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG--RFWTITIASIIY   99 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~G--R~~~i~i~~~l~   99 (309)
                      +..+++.+...+..++++.....++.|.. ..+++..+++.+.++..+...++.++.|+++|+. .  ++....++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            45555556666677777777777888876 8999999999999999999999999999999996 6  334444444454


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      .++...+.+..                      +++.+...-++.|+..|...+..+..+.|..+.+      +....++
T Consensus       376 gl~~~~~p~~~----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~G  427 (509)
T KOG2504|consen  376 GLARLFLPFAT----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYG  427 (509)
T ss_pred             HHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHH
Confidence            45554555544                      6677777778899999999998888999999987      7899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHHHHHhC
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGY  227 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~~  227 (309)
                      +......++.+++|.+.+++.|..| |...|...++..+++.+..++..
T Consensus       428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  428 LLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999988887 99999999988888776655543

>PRK11043 putative transporter; Provisional

Probab=98.92  E-value=3.8e-07  Score=85.39  Aligned_cols=144  Identities=13%  Similarity=0.079  Sum_probs=100.9

Q ss_pred             HHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 021653           34 EKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILP  113 (309)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~  113 (309)
                      ....++....++|.|++ ++|++..+.+........+..++.++++++.||+ |+|+.+....++..++.+.+......+
T Consensus       215 ~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (401)
T PRK11043        215 CSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLS  292 (401)
T ss_pred             HHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33444555566777775 5899999988877777788888999999999996 999977666655555544333222100


Q ss_pred             CCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021653          114 QLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV  193 (309)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~  193 (309)
                                       ..+...+.++..+.+++.+...+.......|..|+       .+++..++++.....++..++
T Consensus       293 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~~~~  348 (401)
T PRK11043        293 -----------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-------ATGKAAALQNTLQLGLCFLAS  348 (401)
T ss_pred             -----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------cChHHHHHHHHHHHHHHHHHH
Confidence                             01334445556677888888888887777777764       488888888887777888888


Q ss_pred             HHHHHhhccc
Q 021653          194 TVLVYIQDNI  203 (309)
Q Consensus       194 ~~~~~i~~~~  203 (309)
                      .+.+.+.+..
T Consensus       349 ~~~g~l~~~~  358 (401)
T PRK11043        349 LLVSALISTP  358 (401)
T ss_pred             HHHHHccCCC
Confidence            8888776543

>PRK09669 putative symporter YagG; Provisional

Probab=98.91  E-value=1.3e-07  Score=90.10  Aligned_cols=125  Identities=12%  Similarity=0.099  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHH
Q 021653           60 AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYV  139 (309)
Q Consensus        60 ~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (309)
                      .+.+.....+...++.++.++++||+ |||+.+.++.++..++.+...+..                    ..+.+.+++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~  324 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFIP--------------------PSNVWLIFA  324 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhC--------------------cchHHHHHH
Confidence            33444455566677888999999996 999999988766654433333221                    115566777


Q ss_pred             HHHHHHHhhhcchhhhhhhhhcccCCCChh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 021653          140 SLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGW  205 (309)
Q Consensus       140 ~~~l~gig~g~~~~~~~~~~ad~~~~~~~~-~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw  205 (309)
                      ..++.|+|.+...+...++++|..|.++.+ ++++.|..++.+.+...+|..+++.+.+.+.+..|+
T Consensus       325 ~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        325 LNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            778899999999999999999998854321 233567788899999999999999998887776665

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.90  E-value=3.2e-07  Score=85.61  Aligned_cols=69  Identities=13%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             hHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Q 021653           41 FNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (309)
Q Consensus        41 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~  110 (309)
                      .....+.|+++++|++..+.+.+.....++..++.++.|++.||+ |||+.+.++..+..++.+++.+..
T Consensus       222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~  290 (392)
T PRK10473        222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP  290 (392)
T ss_pred             HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456778888999999999888888999999999999999996 999999999988888887777654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.89  E-value=9.3e-08  Score=90.36  Aligned_cols=170  Identities=14%  Similarity=0.130  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc---cchHHHHH-HHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWTIT-IASIIYQIGMI  104 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~---~GR~~~i~-i~~~l~~~g~~  104 (309)
                      ...+..++.+-.+..++..|+++.+|+++..++.+..+.-+.-++.-|+.|.+.||.   +||+|-.+ .+.+-..+...
T Consensus        19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~   98 (467)
T COG2211          19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV   98 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence            345556666667788899999999999999999999999999999999999999983   68876554 44455555555


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH
Q 021653          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (309)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~  184 (309)
                      ++..+..                ...+.+....++.-++.+++...+..+..++.+|+-++..     +|.+..+|-...
T Consensus        99 l~F~~p~----------------~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R~~~  157 (467)
T COG2211          99 LLFITPD----------------FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWRMVF  157 (467)
T ss_pred             HHHcCCC----------------cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHHHHH
Confidence            5554331                0012244445566678899999999999999999877654     899999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc-------ccchhhhhHHHHHHHHH
Q 021653          185 MGAAILVAVTVLVYIQDN-------IGWGWGLGIPTFAMFLS  219 (309)
Q Consensus       185 ~~iG~~l~~~~~~~i~~~-------~gw~~~f~i~~~~~~~~  219 (309)
                      .++|.++...+...+...       .||+...++.+++..+.
T Consensus       158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~  199 (467)
T COG2211         158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL  199 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence            999988876665555432       35555544444444333

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.83  E-value=6.6e-07  Score=85.32  Aligned_cols=190  Identities=12%  Similarity=0.061  Sum_probs=121.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      .+.....+...+++.+.-........+.+-.+-|++..++............+..+++.++-||+ |||+.+++++.++.
T Consensus       268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMA  346 (485)
T ss_pred             hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence            34455555666666665432333333444457799999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcc-hhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGI-RPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~-~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      +..+++.....+...             ....-.+..+++.++..++.+.- -|...-+.+|.+|..      .|..+.+
T Consensus       347 ~~~~~~~~~~~l~~~-------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~------~R~aa~s  407 (485)
T KOG0569|consen  347 VALLLMSIALFLSNS-------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS------ARSAAQS  407 (485)
T ss_pred             HHHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc------chHHHHH
Confidence            888877765522110             00000111223333333222222 345566779999988      5888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCccee
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYR  231 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~  231 (309)
                      +-.....+..++.......+.+..|= ..|.+..+..++..+..+...|..+
T Consensus       408 ~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  408 VATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            77777667777666666777776664 4455555555555555555555543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.82  E-value=3.6e-07  Score=86.30  Aligned_cols=158  Identities=11%  Similarity=-0.056  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHhHHh-cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 021653           30 NEVCEKLAVVGFNTNMISYLTTQ-LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (309)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~  108 (309)
                      ..++......++.++++.|+.+. .+.+...++...+.+..+..++.+++|+++||+ ++|+.+.+..++..+..++...
T Consensus       240 ~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~~~  318 (410)
T TIGR00885       240 AQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGSIF  318 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333345567788888643 255555566667777788899999999999996 9999988887777766666655


Q ss_pred             HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHH
Q 021653          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (309)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG  188 (309)
                      ..                      ... ......+.|+..+.++|.+.....+..+++.       .........+ .+|
T Consensus       319 ~~----------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~l~~~-~~G  367 (410)
T TIGR00885       319 AG----------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAGLVMA-IIG  367 (410)
T ss_pred             cC----------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHHHHH-Hhc
Confidence            33                      211 2455677788888999999999999998652       2222222223 389


Q ss_pred             HHHHHHHHHHhhccc------cchhhhhHHHHHHHHH
Q 021653          189 ILVAVTVLVYIQDNI------GWGWGLGIPTFAMFLS  219 (309)
Q Consensus       189 ~~l~~~~~~~i~~~~------gw~~~f~i~~~~~~~~  219 (309)
                      +.+.|.+.|++.|..      +.+.+|.++.++.+..
T Consensus       368 ga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~  404 (410)
T TIGR00885       368 GGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI  404 (410)
T ss_pred             cchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence            999999999999853      4778888877665443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.81  E-value=1.1e-07  Score=90.07  Aligned_cols=190  Identities=15%  Similarity=0.126  Sum_probs=138.5

Q ss_pred             ccccCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHH-hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccch-HHH
Q 021653           14 VKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR-FWT   91 (309)
Q Consensus        14 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR-~~~   91 (309)
                      .+..+.+||.+++..++.++..+.++-....+-.|+++ +.+-+.+-.|++++...++..++.+..|+.+.|. |+ |+-
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P  104 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP  104 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence            34557899999999999999888776666667788864 4667777889999999999999999999999996 75 777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhh
Q 021653           92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (309)
Q Consensus        92 i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~  171 (309)
                      ++.|.++.++|.++-......|.                 ...++++++|++.|+|.|.. +..-.|+++....+     
T Consensus       105 li~s~ii~~~g~llY~~l~~~~~-----------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~-----  161 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYVPN-----------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVE-----  161 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-----------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCcc-----
Confidence            88899999999998844443332                 26788999999999998765 56678888876655     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHH----hhcc------c---cchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          172 TKTWKYFNWYYFVMGAAILVAVTVLVY----IQDN------I---GWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       172 ~~r~~~~~~~~~~~~iG~~l~~~~~~~----i~~~------~---gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                       .|.++++....+..+|..+||.+...    .++.      .   .+..+-|+.+++.++.++++.+..+
T Consensus       162 -dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~  230 (488)
T KOG2325|consen  162 -DRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK  230 (488)
T ss_pred             -chHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence             47777776666666666666665332    2221      1   1334556677766666655554433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.81  E-value=4.8e-07  Score=85.56  Aligned_cols=161  Identities=19%  Similarity=0.205  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ....+++..++...++.-..+.++.|.+..++.+................++.++...+++|+ |||+++.++.++.+++
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~  315 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG  315 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            334444444444444444444556666667777777777777777777777789999999996 9999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChh-hhhhhhHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNWY  181 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~-~~~~r~~~~~~~  181 (309)
                      .+++.+..                    ..+.+++++..++.++|.+...+...++++|..+-.+-+ ++++-|..++.+
T Consensus       316 ~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~  375 (467)
T COG2211         316 YLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM  375 (467)
T ss_pred             HHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence            99888765                    226788888889999999999999999999988754321 123457777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIG  204 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~g  204 (309)
                      .+..-+|..++..+.+++-+..|
T Consensus       376 tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         376 TFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            77888888877766666544333

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.81  E-value=6.3e-08  Score=89.11  Aligned_cols=139  Identities=13%  Similarity=0.082  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      .+.+....++.....+.+..+++.|+++.+|++..+++.+.+...+...++.+++|+++||+ |||+.+..+..+...+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence            33444444444555667778899999999999999999888888888999999999999996 99988887776666665


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH
Q 021653          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (309)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  183 (309)
                      .++.....                  ++.+...+.+..++.+++.|...+...++.+|.+|.       .+|+..+..+.
T Consensus       306 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~g~~~g~~~~  360 (366)
T TIGR00886       306 FLVVLGLV------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-------ATGAVSGLVGA  360 (366)
T ss_pred             HHHHhcCC------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-------hcccHHHHHHH
Confidence            55554320                  000344445555556666666666677777888774       58888888776


Q ss_pred             HHHHH
Q 021653          184 VMGAA  188 (309)
Q Consensus       184 ~~~iG  188 (309)
                      ..++|
T Consensus       361 ~~~~g  365 (366)
T TIGR00886       361 IGNLG  365 (366)
T ss_pred             hccCC
Confidence            66654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.80  E-value=1.4e-06  Score=81.30  Aligned_cols=138  Identities=9%  Similarity=-0.040  Sum_probs=95.3

Q ss_pred             HHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 021653           42 NTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (309)
Q Consensus        42 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~  121 (309)
                      ....+.|+++.+|+++.+.+........+..++.++.+++.||+ ||+...  +.....++.++.......         
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~---------  294 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWF---------  294 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHh---------
Confidence            34456788878999999988888777778888888888888886 743322  222233332222221100         


Q ss_pred             CccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021653          122 GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (309)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~  201 (309)
                              ...+.+.+.++..+.++|.+...+....+..|.+|+       .++...+.++...++|+.+++.+.+.+..
T Consensus       295 --------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        295 --------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-------LAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             --------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence                    001345566777888999999889999988898874       46778888888889999999998888766


Q ss_pred             cccch
Q 021653          202 NIGWG  206 (309)
Q Consensus       202 ~~gw~  206 (309)
                      ...+.
T Consensus       360 ~~~~~  364 (394)
T PRK11652        360 TGQFS  364 (394)
T ss_pred             CchHH
Confidence            54343

>PRK11462 putative transporter; Provisional

Probab=98.75  E-value=1.6e-06  Score=83.16  Aligned_cols=154  Identities=13%  Similarity=0.087  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q 021653           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTIS  109 (309)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~  109 (309)
                      ..++..............|.+..++.. ...+.+...+.+...++.+++++++||+ |||+.+..+..+..+..++..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~  313 (460)
T PRK11462        236 LTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFV  313 (460)
T ss_pred             HHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333334444444444433 3344556667777888899999999996 99988775555444433333222


Q ss_pred             hhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhh-hhhhhHHHHHHHHHHHHH
Q 021653          110 AILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQ-ATKTWKYFNWYYFVMGAA  188 (309)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~-~~~r~~~~~~~~~~~~iG  188 (309)
                      .                    ..+...+++..++.|++.+...+...++++|..+.++-+. +++-|..++.+.+...+|
T Consensus       314 ~--------------------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg  373 (460)
T PRK11462        314 P--------------------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLG  373 (460)
T ss_pred             c--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHH
Confidence            1                    0123334444566677777777777788888877442111 223455567777788888


Q ss_pred             HHHHHHHHHHhhccccc
Q 021653          189 ILVAVTVLVYIQDNIGW  205 (309)
Q Consensus       189 ~~l~~~~~~~i~~~~gw  205 (309)
                      ..+++.+.+.+.+..|+
T Consensus       374 ~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        374 LAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            88888877766544444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.73  E-value=3.1e-07  Score=87.77  Aligned_cols=178  Identities=13%  Similarity=0.046  Sum_probs=119.2

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-------hHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG-------RFWTITI   94 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~G-------R~~~i~i   94 (309)
                      +.+|.+++..++.+++++.+..++|.|+.+.+|++..+.|...++..+...+..+++|.++|+...       +||.+- 
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn-  336 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFN-  336 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHH-
Confidence            467888899999999999999999999999999999999999999999999999999999999622       112111 


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhh
Q 021653           95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  174 (309)
Q Consensus        95 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r  174 (309)
                      +......+..+..+ .+.+..             +.......+.++..+.|+..++...+    ..|..|.       .-
T Consensus       337 ~i~~~~~ai~l~~l-~~~~~~-------------~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~apq-------~a  391 (466)
T KOG2532|consen  337 TIAFGGPAVFLLVL-AFTSDE-------------HRLLAVILLTIAIGLSGFNISGFYKN----HQDIAPQ-------HA  391 (466)
T ss_pred             hHHHHHHHHHHHee-eecCCC-------------cchHHHHHHHHHHHHcccchhhhHhh----hhhccch-------HH
Confidence            11111112122221 111110             00012222222333333333333222    2233454       47


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccchhhhhHHHHHHHHHHHHHHH
Q 021653          175 WKYFNWYYFVMGAAILVAVTVLVYIQDN---IGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       175 ~~~~~~~~~~~~iG~~l~~~~~~~i~~~---~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      +..++..++..++.++++|.+.+.+..+   -.|+..|++.+++.+++-+++..
T Consensus       392 ~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  392 GFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence            8888899999999999999999887732   37999999999988887765543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.70  E-value=1.8e-06  Score=80.79  Aligned_cols=178  Identities=13%  Similarity=0.105  Sum_probs=134.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcC---CCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH---MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~   97 (309)
                      -|..|.+++........++..-.-.+.|++..++   .++...+.+.+.-...-.+.-.+..++-+|+ |.|+.++++..
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            3556665555555555555555557888876554   3445566677777777778888899999995 99999999998


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHH
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  177 (309)
                      +..+=.+.+++++                      +++.+.+...+.++-.+.......-|+++.+|++      ..++.
T Consensus       298 i~~iRi~~~~~~~----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r------lsAt~  349 (412)
T PF01306_consen  298 IMAIRIIGSGFAT----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR------LSATL  349 (412)
T ss_dssp             HHHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG------GHHHH
T ss_pred             HHHHHHHHHhhhc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------HHHHH
Confidence            8888777777766                      7888889999999999999999999999999976      45666


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhC
Q 021653          178 FNW-YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (309)
Q Consensus       178 ~~~-~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~  227 (309)
                      ... ++.+..+|..+.+.+.|++.|+.|.+..|++.+.+++...++..+..
T Consensus       350 y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  350 YLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            665 46788899999999999999999999999888887766655544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.70  E-value=7.9e-07  Score=85.58  Aligned_cols=182  Identities=9%  Similarity=0.025  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHH----HHHHHHHHHHHHHhHHHHHH----HHHHhccchHHH--HHHHHH
Q 021653           28 FSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK----AANTLTNFGGTGSLTPLIGA----FVADAYAGRFWT--ITIASI   97 (309)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----~~~~~~~~~~~~~~~~l~~G----~laD~~~GR~~~--i~i~~~   97 (309)
                      ++...+....+.-..+.++.|..+..+.+...    .+.+.+.-.+...+.+++..    .+.||..+.+..  +.+|++
T Consensus       278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~  357 (475)
T TIGR00924       278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGML  357 (475)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            33334444455555566777776654433211    44445544444444544433    445542133333  367888


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHH
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  177 (309)
                      +..++.+.+.+......             .+...+.+.+.+..++.++|.....|....+.++..|++      .||+.
T Consensus       358 l~~~~~~~~~~~~~~~~-------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~------~~g~~  418 (475)
T TIGR00924       358 FCGASFLTFAASIWFAD-------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR------LMGQM  418 (475)
T ss_pred             HHHHHHHHHHHHHhhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHH
Confidence            88888777765431100             011237788889999999999999999999999999987      79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       178 ~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      .+.++....+|..++..+.....+..+|...|...+++.++..++++...|
T Consensus       419 ~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       419 LGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888877766667887777777766665555555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.67  E-value=5.8e-07  Score=81.70  Aligned_cols=170  Identities=10%  Similarity=0.060  Sum_probs=110.5

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh--cCC-----------------CHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ--LHM-----------------PLTKAANTLTNFGGTGSLTPLIGAFVA   82 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~--~~~-----------------s~~~~~~~~~~~~~~~~~~~l~~G~la   82 (309)
                      |.-+.++..-+..++.+|+..-.....++..  .|.                 +...--.=..+....-+-|.++.+++-
T Consensus       326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv  405 (528)
T KOG0253|consen  326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV  405 (528)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence            4445566677778889988765443333321  111                 111111112334556678889999999


Q ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcc
Q 021653           83 DAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQ  162 (309)
Q Consensus        83 D~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~  162 (309)
                      ||+ |||+++..+.+++.+..+++....                 + .+....+++.+|+++..+.    .+++.|..|.
T Consensus       406 erl-GRKkTMal~l~~f~iflfll~~c~-----------------~-rn~~tvllf~arafisg~f----qvaYvYtPEV  462 (528)
T KOG0253|consen  406 ERL-GRKKTMALSLILFGIFLFLLTTCK-----------------T-RNAYTVLLFTARAFISGAF----QVAYVYTPEV  462 (528)
T ss_pred             HHh-cchhHHHHHHHHHHHHHHHHHHhc-----------------C-cchhHHHHHHHHHHHhchh----eEEEEecCcc
Confidence            995 999999999998888777766543                 1 1123455667777765444    4567888999


Q ss_pred             cCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          163 FDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       163 ~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      +|+.      .|+...+.-.-..-+|+++.|.++  +....+-..+..+...+.+++.+.
T Consensus       463 yPTa------vRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIa  514 (528)
T KOG0253|consen  463 YPTA------VRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIA  514 (528)
T ss_pred             cchh------hhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHH
Confidence            9998      699999888888999999999888  332333334555555555555443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.67  E-value=2.2e-06  Score=75.10  Aligned_cols=127  Identities=11%  Similarity=0.086  Sum_probs=95.7

Q ss_pred             HHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 021653           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (309)
Q Consensus        45 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  124 (309)
                      ....+.+.+|+|..+...+...-.++.+++ ++.|.+.|++ |.+.++.+|.+...+|+.++..+..-.           
T Consensus        24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~-----------   90 (250)
T PF06813_consen   24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR-----------   90 (250)
T ss_pred             hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc-----------
Confidence            345677899999999999999999999875 8899999996 999999999999999999888765100           


Q ss_pred             ccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021653          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (309)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~  195 (309)
                          -.....+.+.+...+.+.|.+...+.......+.||.+       ||...+..-....+++.+=..+
T Consensus        91 ----i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai~t~i  150 (250)
T PF06813_consen   91 ----IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAIFTQI  150 (250)
T ss_pred             ----cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHHHHHH
Confidence                01125566666666777777666666666667899964       8888888766666666553333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.63  E-value=6.6e-06  Score=77.44  Aligned_cols=176  Identities=12%  Similarity=0.050  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 021653           26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (309)
Q Consensus        26 ~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~  105 (309)
                      ..++..++.....-....+...|+++.-+.+....+.+.+...+.-.+.-.+.+++-.|+ |-++.+.++.+.+++=..+
T Consensus       211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l  289 (400)
T PF03825_consen  211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLL  289 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence            333444444544444556778888754447777767666666666667777889999996 9999999999888877676


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH-H
Q 021653          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF-V  184 (309)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~-~  184 (309)
                      .+.... |                ..........+..+.|+..|........|+.+..|++      .|++.-+++.. .
T Consensus       290 ~a~~~~-~----------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~------~~at~Q~l~~~~~  346 (400)
T PF03825_consen  290 YAYFSD-P----------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE------LRATAQGLYSALS  346 (400)
T ss_pred             HHHhcC-C----------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc------chHHHHHHHHHHH
Confidence            666530 0                0001222334456789999999999999999999988      68888888776 4


Q ss_pred             HHHHHHHHHHHHHHhhccccch------hhhhHHHHHHHHHHHHHHH
Q 021653          185 MGAAILVAVTVLVYIQDNIGWG------WGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       185 ~~iG~~l~~~~~~~i~~~~gw~------~~f~i~~~~~~~~~~~~~~  225 (309)
                      ..+|..+|..++|++.+.+|-+      ..+.+.+++.++..++++.
T Consensus       347 ~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  347 FGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999877644      3445555555555545444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.62  E-value=1.2e-05  Score=75.60  Aligned_cols=113  Identities=15%  Similarity=0.096  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~  108 (309)
                      ...++..+.+-....+++.|++ +.|+|..+.+.+.++..+...+++++.|+++||+..+++.+.+..++..+.......
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445677888886 578999999999999999999999999999999744667666655554444333333


Q ss_pred             HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccC
Q 021653          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFD  164 (309)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~  164 (309)
                      ..                      +.+.+++..++..+......|...++.-+...
T Consensus        88 ~~----------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen   88 SS----------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             hc----------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            32                      44555555566666666666666666555544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.62  E-value=6.9e-06  Score=77.59  Aligned_cols=170  Identities=15%  Similarity=-0.021  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+...+...+....++.....+|.++++.+|++..+.+.......++..++..+.+.+.++. ++++.+.....+..+|
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig  297 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG  297 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence            344444445555666666677788999989999999999887777777777777777765443 4444444444455555


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHH
Q 021653          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (309)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  182 (309)
                      .+++.......                 ..+...++++.++.++|.+...++.....-.+...       .+|+..+.+.
T Consensus       298 ~~l~~~~~~~~-----------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~-------~~G~a~a~~~  353 (413)
T PRK15403        298 LALLIVGNLLW-----------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNL-------PKGTVSASLN  353 (413)
T ss_pred             HHHHHHHHHHc-----------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCC-------CCcHHHHHHH
Confidence            55444332000                 01333456777888889888887777533222221       2556666666


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Q 021653          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFL  218 (309)
Q Consensus       183 ~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~  218 (309)
                      .....+..+++.+.+++.+. +-..+|....++..+
T Consensus       354 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  388 (413)
T PRK15403        354 MVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence            66666777777777777654 445566555544433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.58  E-value=7e-09  Score=100.90  Aligned_cols=184  Identities=13%  Similarity=0.233  Sum_probs=3.0

Q ss_pred             HHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 021653           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQL  115 (309)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~  115 (309)
                      ...++.......-++++|+++.++++.+.+.+.++..+..++..++++|. -|-|.+-+|+++..+|.++.++-.++..-
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            55556666666778899999999999999999999999999999999995 67778888899999999988865433111


Q ss_pred             CC------CCCC---Ccccc-------------------ccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCC
Q 021653          116 RP------PPCE---GEQVC-------------------QEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETD  167 (309)
Q Consensus       116 ~~------~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~  167 (309)
                      ..      ..|.   ....|                   +........+|+++.++.|+|....++...+|+=|..+++ 
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~-  173 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK-  173 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc-
Confidence            10      0000   00112                   1111123567889999999999999999999999988876 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------ccc-chhhhhHHHHHHHHHHHHHHH
Q 021653          168 PKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD---------------------NIG-WGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       168 ~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~---------------------~~g-w~~~f~i~~~~~~~~~~~~~~  225 (309)
                           .-+...+.++....+|..+|..+++...+                     ..| |+.+|.+.+++.++..+.+..
T Consensus       174 -----~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~  248 (539)
T PF03137_consen  174 -----NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF  248 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                 57788888888889999888877665321                     123 888888888777665555444


Q ss_pred             h
Q 021653          226 G  226 (309)
Q Consensus       226 ~  226 (309)
                      .
T Consensus       249 F  249 (539)
T PF03137_consen  249 F  249 (539)
T ss_dssp             -
T ss_pred             C
Confidence            3

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.57  E-value=7.5e-07  Score=83.31  Aligned_cols=178  Identities=11%  Similarity=0.021  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHH--H
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY--Q  100 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~--~  100 (309)
                      ..+......+...+++-...++++.+++++.|++..+.|.+.++..+...+.+++.|.++||+ |.||-++....+.  .
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHH
Confidence            344444445555555555667889999988999999999999999999999999999999996 9666544333222  2


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      .|-.....-.  |.+                  ..-++++.++.++..+.......+. .|.+-++.   +++.+-=++-
T Consensus        87 ~~pff~~v~~--pll------------------~~n~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~---sr~~~feYG~  142 (412)
T PF01306_consen   87 FGPFFIYVFG--PLL------------------QSNFWLGAIIGGIYLGLVFNAGVPL-SEAYAERV---SRRNGFEYGR  142 (412)
T ss_dssp             CHHHHHHTHH--HHH------------------HTT-HHHHHHTTTTTTTTTTTHHHH-HHHHHHHH---HHHHSS-HHH
T ss_pred             HHHHHHHHHH--HHH------------------HHHHHHHHHHHHHHHHHHHcccchH-HHHHHHHH---HHHhcCCcch
Confidence            2332222111  110                  0113334344344444333222222 13333221   1122222333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHh
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      .-...++|..++..++|++.+. +-...||+..+..++..++.+..
T Consensus       143 ~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~  187 (412)
T PF01306_consen  143 ARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLL  187 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHc
Confidence            3345677888888888887652 33456776655544444343333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.56  E-value=8.2e-06  Score=75.51  Aligned_cols=157  Identities=11%  Similarity=0.168  Sum_probs=123.1

Q ss_pred             HHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021653           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (309)
Q Consensus        43 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~  122 (309)
                      ..+-+|--+.||++..+...++..+.++..++-.+.|++..+..|++++..+++.+..++..++.++..           
T Consensus       229 ~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~-----------  297 (403)
T PF03209_consen  229 VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP-----------  297 (403)
T ss_pred             HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            334577777899999999999999999999999999999987679999999999999999988888772           


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 021653          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD-  201 (309)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~-  201 (309)
                              ..+.+.|..+.++.|+|.|.........+-|...++      +.|.+.+.+-....+...++..+++.+.| 
T Consensus       298 --------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~------~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  298 --------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAG------RAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             --------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    226788999999999999999888888888887766      57888888877777776666666555433 


Q ss_pred             ---------cccchhhhhHHHHHHHHHHHHHH
Q 021653          202 ---------NIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       202 ---------~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                               ..+|...|.+-++..++++++..
T Consensus       364 ~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  364 VRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence                     23456666666666665554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.55  E-value=1e-05  Score=70.73  Aligned_cols=140  Identities=19%  Similarity=0.255  Sum_probs=103.7

Q ss_pred             HhcCCCH--HHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccc
Q 021653           51 TQLHMPL--TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQE  128 (309)
Q Consensus        51 ~~~~~s~--~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (309)
                      ..++.+.  ...+...+.+.....++.++.|.++||+ |||+.+..+.....++.++..+...                 
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------------   91 (338)
T COG0477          30 STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-----------------   91 (338)
T ss_pred             HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc-----------------
Confidence            4555554  4778888888888888889999999997 9998888887765556455554440                 


Q ss_pred             ccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhhc--cccc
Q 021653          129 ANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF-VMGAAILVAVTVLVYIQD--NIGW  205 (309)
Q Consensus       129 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~-~~~iG~~l~~~~~~~i~~--~~gw  205 (309)
                         .....+.+.+...|++.|...+....+.+|.+|. .    .+|+...+.... ...+|..+++.+.+.+..  ..+|
T Consensus        92 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (338)
T COG0477          92 ---VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGW  163 (338)
T ss_pred             ---chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence               2577788888889999999999999999999996 1    157887777777 577777787766555543  3578


Q ss_pred             hhhhhHHHHHH
Q 021653          206 GWGLGIPTFAM  216 (309)
Q Consensus       206 ~~~f~i~~~~~  216 (309)
                      +..|.+.....
T Consensus       164 ~~~~~~~~~~~  174 (338)
T COG0477         164 RAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHHH
Confidence            88555554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.44  E-value=9e-06  Score=77.38  Aligned_cols=156  Identities=15%  Similarity=0.113  Sum_probs=115.0

Q ss_pred             HHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc--cc--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021653           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY--AG--RFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (309)
Q Consensus        44 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~--~G--R~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~  119 (309)
                      ....|+.+++|+++++.....+....-.. .-++.|.++|.+  +|  ||+=++++.++..++.+.+....   .     
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~-----   81 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---A-----   81 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---c-----
Confidence            35568889999999998876666555554 457789999995  45  55556667766655555555432   1     


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021653          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (309)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i  199 (309)
                                ...+.....+..++..+|......+.-+..+|....+..    .++...++.+....+|++++..+.|++
T Consensus        82 ----------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l  147 (433)
T PF03092_consen   82 ----------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPL  147 (433)
T ss_pred             ----------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                      011334445566778899999999999999999876642    478888899999999999999999999


Q ss_pred             hccccchhhhhHHHHHHHHHHHH
Q 021653          200 QDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       200 ~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      .+..+++..|.+.+++..+..+.
T Consensus       148 ~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen  148 LDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             hhcCCCeEEehHHHHHHHHHHHH
Confidence            99999999998887766555433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.42  E-value=1.2e-05  Score=76.80  Aligned_cols=171  Identities=18%  Similarity=0.132  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHhhH---HHHHHHhHHhcCCCHHH-HHHHHHH----HHHHHHhHHHHHHHHHHhccchHHHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFN---TNMISYLTTQLHMPLTK-AANTLTN----FGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~---~~l~~yl~~~~~~s~~~-~~~~~~~----~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l   98 (309)
                      +....++..++++...   .+...+.....+.+..+ .......    ......+.+++-|.++|+| |||..+.+..+.
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~  101 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHH
Confidence            3344444555544444   44555555444433322 2222222    2466678889999999997 999999999888


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      .++..+.+.+..                        +.+++ ..-..-|.+...+...++++|....+      .|...+
T Consensus       102 ~~l~~~~~~~~~------------------------~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~------~R~~~~  150 (463)
T KOG2816|consen  102 TILPALCLLFQG------------------------YWFFL-LLGLSGGFSAIFSVGFAYVADISSEE------ERSSSI  150 (463)
T ss_pred             HHHhHHHHHHHH------------------------HHHhh-hcccccchhhhhhhhhhheeeccchh------HHHHHH
Confidence            888777766543                        22222 11112234456678888899988876      799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcc
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPL  229 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  229 (309)
                      +..+.....+..++|..++++....|....|.+.++..+++.+......|+
T Consensus       151 gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E  201 (463)
T KOG2816|consen  151 GLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE  201 (463)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence            998888888999999999999998999999999998888877665555443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.42  E-value=1.3e-05  Score=73.92  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=108.0

Q ss_pred             hhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021653           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (309)
Q Consensus        40 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~  119 (309)
                      .+.++++.|+.+..+++..+++..++.+.++..+|..++-++-.|+ ...|.+.+.+++.++-++...++.         
T Consensus       254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~---------  323 (422)
T COG0738         254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIG---------  323 (422)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            3567889999888999999999999999999999999999999885 888888877665554444444433         


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021653          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (309)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i  199 (309)
                                   + ..-..+.+++|+..+.++|++.+...+..|++.     +.++..   -....+|+.+.|.+.|++
T Consensus       324 -------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~~---l~maivGGAiiP~l~G~i  381 (422)
T COG0738         324 -------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSGL---LVMAIVGGAIIPPLQGVI  381 (422)
T ss_pred             -------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----ccccee---eeeheecchHHHHHHHHH
Confidence                         3 223345678899999999999999999999765     333332   224567888999999999


Q ss_pred             hccccchhhhhH
Q 021653          200 QDNIGWGWGLGI  211 (309)
Q Consensus       200 ~~~~gw~~~f~i  211 (309)
                      .|..|-...+.+
T Consensus       382 ~d~~g~~~~~~~  393 (422)
T COG0738         382 ADMFGIQLTFLI  393 (422)
T ss_pred             HHhhhhHHHHHH
Confidence            999988777663

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.41  E-value=1.9e-05  Score=73.65  Aligned_cols=134  Identities=13%  Similarity=0.031  Sum_probs=95.7

Q ss_pred             HHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 021653           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (309)
Q Consensus        45 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  124 (309)
                      +..|..+-++ +...+.+..-+|+..+....+.+-|+.|++ |=|.+.++++.+.++|..+-..+. .|.+.+.      
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~~------  137 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVPPL------  137 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Ccccccc------
Confidence            3455666667 666777788889999999999999999996 999999999999999999888776 4433221      


Q ss_pred             ccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021653          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (309)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~  200 (309)
                             -.....+.|-.+.+...-.+...-+-..+-+|+++      +|..+...-.++..+|..++.++...+.
T Consensus       138 -------f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~------qra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  138 -------FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPD------QRAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             -------chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcc------hhhhhhhHHHhcchHHHHHHhhccceec
Confidence                   01125556666666665555444445556778877      6888777766677777777766655443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.37  E-value=1.3e-05  Score=77.48  Aligned_cols=146  Identities=12%  Similarity=0.071  Sum_probs=97.6

Q ss_pred             HHHHHHhhHHHHHHHhHHhcCCCHH----HHHHHHHHHHHHHHhHHHHHHHHHHhccchHHH-------HHHHHHHHHHH
Q 021653           34 EKLAVVGFNTNMISYLTTQLHMPLT----KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT-------ITIASIIYQIG  102 (309)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~s~~----~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~-------i~i~~~l~~~g  102 (309)
                      ....+......++.|.++..+.+..    ..+.+.+...+...+..++.|++.||+ |||+.       +.+|.++..++
T Consensus       281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~  359 (489)
T PRK10207        281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG  359 (489)
T ss_pred             HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence            3334444446677777643332211    123344444455667777889999996 98873       66777777777


Q ss_pred             HHHHHHHhh-cCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          103 MICLTISAI-LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       103 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      .+.++.... ...             .....+.+.+....++.|+|.++..++...+..+..|++      .++...+.+
T Consensus       360 ~~~~~~~~~~~~~-------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~------~~g~~~g~~  420 (489)
T PRK10207        360 FLTAAAAGMWFAD-------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH------LMGFILGMW  420 (489)
T ss_pred             HHHHHHHHHhhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH------HHHHHHHHH
Confidence            655443220 000             001124566667778999999999999999999999987      799999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 021653          182 YFVMGAAILVAVTVLVYI  199 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i  199 (309)
                      ++..++|+.++..+....
T Consensus       421 ~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        421 FLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999987776544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.37  E-value=4.6e-06  Score=80.26  Aligned_cols=165  Identities=16%  Similarity=0.118  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc---cchHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWTITIASIIY   99 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~---~GR~~~i~i~~~l~   99 (309)
                      .+|...+..++.....|++..++|.|+++..|++..++..+...+.++..++.+++|+++||.   +.+|.....+..++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            455566677778888889999999999986779999999999999999999999999999993   26666655555444


Q ss_pred             H-HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653          100 Q-IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus       100 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      . +|.+.+....                      .....+.+.+....+.+...++......+....+.     ++-+..
T Consensus       354 ~~~g~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~~~~  406 (495)
T KOG2533|consen  354 AIIGAISLLAAA----------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KALTTV  406 (495)
T ss_pred             HHHHHHHHHhhc----------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhHHHH
Confidence            3 3334333332                      22223333333444444555566666666665543     455555


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHhhccccchhhhhHHHH
Q 021653          179 NWYYFVMGAAILVAV-TVLVYIQDNIGWGWGLGIPTF  214 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~-~~~~~i~~~~gw~~~f~i~~~  214 (309)
                      +.+..+.+.++.+++ +..+.....++|...|.....
T Consensus       407 ~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  407 SAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             hhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence            555555555555444 445556666788888844333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.35  E-value=2.8e-05  Score=75.43  Aligned_cols=176  Identities=14%  Similarity=0.035  Sum_probs=108.6

Q ss_pred             HHHHHHHhhHHHHHHHhHH--hcCCCHH------HHHHHHHHHHHHHHhHHHHH----HHHHHhccchHHHHHHHHHHHH
Q 021653           33 CEKLAVVGFNTNMISYLTT--QLHMPLT------KAANTLTNFGGTGSLTPLIG----AFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        33 ~~~~~~~~~~~~l~~yl~~--~~~~s~~------~~~~~~~~~~~~~~~~~l~~----G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      +....+|.+...++.++..  ..+.+..      ..+++.+...+...++.++.    +++.||+ +..+.+.+|.++..
T Consensus       283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~  361 (500)
T PRK09584        283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCS  361 (500)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHH
Confidence            4444555555555555442  1111111      13334444444444454555    5555553 66688888999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      +|.+.+......+.             .....+.+.+....++.++|.++..|....++.+..|++      .||+.++.
T Consensus       362 l~f~~l~~~~~~~~-------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~------~rg~~~g~  422 (500)
T PRK09584        362 GAFLVLPLGAKFAN-------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQR------LMGFIMGS  422 (500)
T ss_pred             HHHHHHHHHHHhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHH------HHHHHHHH
Confidence            99888777652111             001235667788889999999999999999999999988      79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc----------cccchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          181 YYFVMGAAILVAVTVLVYIQD----------NIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~----------~~gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      ++++..+|..++..+.+....          ..+....|...+++.++..++++...|
T Consensus       423 ~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        423 WFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888777666543211          112456666666554433333333333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.34  E-value=5.4e-05  Score=70.19  Aligned_cols=141  Identities=16%  Similarity=0.064  Sum_probs=98.2

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-----hH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 021653           50 TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG-----RF-WTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (309)
Q Consensus        50 ~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~G-----R~-~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  123 (309)
                      ..+++++....+..++....... ..+..|+.||+. +     || +-++.|.++...|..+...+...-.-      ..
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~------~~   78 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAE------SG   78 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcc------cc
Confidence            45788888888888877776665 578899999997 6     55 44556666777766666655422110      00


Q ss_pred             cccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021653          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (309)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~  203 (309)
                      +....+.........+...+.|+|.+...++..++.+|..|++      +|++..+..|...-+|..++..+.+.+-+.+
T Consensus        79 ~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~  152 (403)
T PF03209_consen   79 QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF  152 (403)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            0001111112233345556779999999999999999999988      7999999999999999999999888766655


Q ss_pred             c
Q 021653          204 G  204 (309)
Q Consensus       204 g  204 (309)
                      +
T Consensus       153 s  153 (403)
T PF03209_consen  153 S  153 (403)
T ss_pred             C
Confidence            4

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.23  E-value=1.9e-05  Score=78.30  Aligned_cols=200  Identities=12%  Similarity=0.196  Sum_probs=143.1

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      +.++.++....+......+......+-+.+.++++..+.+.+.+.+.++..+...+..+.+-|. =|-+.+-+|++++.+
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence            3444444444444433336666667778889999999999999999999999999999999995 677788889999999


Q ss_pred             HHHHHHHHhhcCCC-------------CC-------------CCCC-Cccccc--cccch-hHHHHHHHHHHHHHhhhcc
Q 021653          102 GMICLTISAILPQL-------------RP-------------PPCE-GEQVCQ--EANKG-QVAILYVSLLLAALGSGGI  151 (309)
Q Consensus       102 g~~~~~~~~~~~~~-------------~~-------------~~~~-~~~~~~--~~~~~-~~~~~~~~~~l~gig~g~~  151 (309)
                      |.++.++-.++..-             .+             ..|. ..+.|.  ..++. -..+|+++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            99988865322100             00             1111 112222  12222 3446788999999999999


Q ss_pred             hhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------c-cchhhhhHH
Q 021653          152 RPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN------------------I-GWGWGLGIP  212 (309)
Q Consensus       152 ~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~------------------~-gw~~~f~i~  212 (309)
                      ++...+|+=|-..++      .....++..+....+|.++|.++++++...                  . .|+.+|++.
T Consensus       255 ~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~  328 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC  328 (735)
T ss_pred             ccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence            999999987766655      678888999999999999999888875321                  1 388999999


Q ss_pred             HHHHHHHHHHHHHhCc
Q 021653          213 TFAMFLSIIAFLIGYP  228 (309)
Q Consensus       213 ~~~~~~~~~~~~~~~~  228 (309)
                      +.+.++..+.+++..+
T Consensus       329 g~~~~~~a~p~f~fPk  344 (735)
T KOG3626|consen  329 GALLLFSAVPLFFFPK  344 (735)
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            8888877766655443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.22  E-value=6.3e-06  Score=79.21  Aligned_cols=146  Identities=8%  Similarity=-0.145  Sum_probs=109.9

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 021653           50 TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEA  129 (309)
Q Consensus        50 ~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (309)
                      ++.+|+++...+.+.....++..++..+.+.+.+|+ +.|+++.++.++..++.+.......-..+.             
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~-------------  345 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA-------------  345 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc-------------
Confidence            457899999999999999999999999999999985 999999999988888775543211000000             


Q ss_pred             cc-hhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc----
Q 021653          130 NK-GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG----  204 (309)
Q Consensus       130 ~~-~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~g----  204 (309)
                      .. .....+....++.+++.+....+...++.+..|++      .+++.++++....++|..+++.+++++.+..|    
T Consensus       346 ~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~------~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~  419 (468)
T TIGR00788       346 FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSG------CESSVFALLASILHLGSSVSGFLGVLLMETIGITCD  419 (468)
T ss_pred             cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCC------ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            00 02223344456778888888888899999999988      69999999999999999999999999988777    


Q ss_pred             -chhhhhHHHHH
Q 021653          205 -WGWGLGIPTFA  215 (309)
Q Consensus       205 -w~~~f~i~~~~  215 (309)
                       ++.-+....+.
T Consensus       420 ~~~~~~~~i~i~  431 (468)
T TIGR00788       420 NSNNLWLLILGH  431 (468)
T ss_pred             cccchHHHHHHH
Confidence             55555443333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=4.8e-06  Score=76.51  Aligned_cols=163  Identities=10%  Similarity=0.054  Sum_probs=114.6

Q ss_pred             HHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHhh
Q 021653           34 EKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG--RFWTITIASIIYQIGMICLTISAI  111 (309)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~G--R~~~i~i~~~l~~~g~~~~~~~~~  111 (309)
                      .+...-..-..++.++.+.+.-+.-+.+....-..+...++..+.|.++||+ +  |......+.+..........+.. 
T Consensus       282 ~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~~-  359 (464)
T KOG3764|consen  282 SNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFAT-  359 (464)
T ss_pred             ccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhhh-
Confidence            3333333445567777777774444777777777888899999999999997 9  53333333332222222222222 


Q ss_pred             cCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHH
Q 021653          112 LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILV  191 (309)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l  191 (309)
                                           ++..+++-+...+++.+...+...+......+.+...+-...|...++...+.++|..+
T Consensus       360 ---------------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~  418 (464)
T KOG3764|consen  360 ---------------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAI  418 (464)
T ss_pred             ---------------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhc
Confidence                                 67778888888899999988888888888877653221115788889999999999999


Q ss_pred             HHHHHHHhhccccchhhhhHHHHHHHHH
Q 021653          192 AVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (309)
Q Consensus       192 ~~~~~~~i~~~~gw~~~f~i~~~~~~~~  219 (309)
                      ||.+++.+.+..|+.|...+.++..++-
T Consensus       419 GP~~gg~iv~~iGF~wl~~iig~~n~iy  446 (464)
T KOG3764|consen  419 GPTFGGSLVEAIGFEWLMTIIGILNLIY  446 (464)
T ss_pred             cccccchheeehhHHHHHHHHHHHHHHH
Confidence            9999999999999988777766665543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.12  E-value=0.00043  Score=66.54  Aligned_cols=205  Identities=11%  Similarity=-0.014  Sum_probs=134.2

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHH-hcCCCHH------HH---HH-HHHHHHHHHHhHHHHHHHHHHhcc
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLT------KA---AN-TLTNFGGTGSLTPLIGAFVADAYA   86 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~------~~---~~-~~~~~~~~~~~~~l~~G~laD~~~   86 (309)
                      +.-.+.++.++.++++.-++++.+..+...|..+ .+|-++.      +.   +. ....+.+...+.+++--++.+++ 
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-  332 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-  332 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            3445788888899999988888888888888764 4543221      11   22 22334444456666777888885 


Q ss_pred             ch-HHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccC
Q 021653           87 GR-FWTITIASIIYQIGMICLTISAILPQL-RPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFD  164 (309)
Q Consensus        87 GR-~~~i~i~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~  164 (309)
                      |+ |++..++.++..++++...+..+++.- ++  .+..+.--.++.......++...+.|+..+...+.-.+++++..+
T Consensus       333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~  410 (477)
T TIGR01301       333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRY--YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS  410 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence            95 677788888888887777655422110 00  000000001112224556666678899999888888899999888


Q ss_pred             CCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc--chhhhhHHHHHHHHHHHHHHHhCcc
Q 021653          165 ETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG--WGWGLGIPTFAMFLSIIAFLIGYPL  229 (309)
Q Consensus       165 ~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~g--w~~~f~i~~~~~~~~~~~~~~~~~~  229 (309)
                      +++    ++.|..++.++.++.+...+..+..+.+.+..|  -.+.+.+.++..+++.+..+...|+
T Consensus       411 ~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       411 NLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             ccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            532    167999999999999999999888777665555  3456777777777776666555554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.10  E-value=4.4e-05  Score=54.40  Aligned_cols=61  Identities=21%  Similarity=0.207  Sum_probs=50.9

Q ss_pred             HHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHH
Q 021653           37 AVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (309)
Q Consensus        37 ~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~   99 (309)
                      +.-.+..+++.|+. +.|+|..+.+.+.++......+++++.|+++||+ ||++.++....+.
T Consensus        15 ~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen   15 ALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            33445567777876 5899999999999999999999999999999997 9998887765543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.03  E-value=0.00026  Score=68.81  Aligned_cols=90  Identities=10%  Similarity=0.104  Sum_probs=58.4

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH
Q 021653           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (309)
Q Consensus        19 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l   98 (309)
                      ..++.....+....++++..+....+....+.+..+.+... .....+......++..++.++.||+ |||+.++.+.+.
T Consensus       291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            34555555556666666544333333333333455555432 3334445555666677779999996 999999999999


Q ss_pred             HHHHHHHHHHHh
Q 021653           99 YQIGMICLTISA  110 (309)
Q Consensus        99 ~~~g~~~~~~~~  110 (309)
                      +.++.+++....
T Consensus       369 m~~~~~~~~~~~  380 (513)
T KOG0254|consen  369 MSICLVILAVVG  380 (513)
T ss_pred             HHHHHHHHHHHH
Confidence            999998888765

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.02  E-value=0.0013  Score=63.41  Aligned_cols=137  Identities=14%  Similarity=0.014  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhccchHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHH
Q 021653           61 ANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT-IASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYV  139 (309)
Q Consensus        61 ~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~-i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (309)
                      +...++..+...+..++.|.++|.. |+||-++ +.+.+..+...++.+..                    +.+.....+
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~--------------------~~~~~~~~~  131 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS--------------------PGQWWLALV  131 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC--------------------cchHHHHHH
Confidence            4567777888888889999999986 7666554 44445555555555543                    113333333


Q ss_pred             HHHHHHHhhhcchhhhhhhhhcccCCCChhh--------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021653          140 SLLLAALGSGGIRPCVVAFGADQFDETDPKQ--------------------ATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (309)
Q Consensus       140 ~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~--------------------~~~r~~~~~~~~~~~~iG~~l~~~~~~~i  199 (309)
                      ..++..++.+.......+++.|..++++..+                    ...|++..++-+...++|+++...+.-.+
T Consensus       132 l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~  211 (477)
T PF11700_consen  132 LFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLL  211 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567777788888899999888774200                    00127777777778888888876654333


Q ss_pred             hcc--------ccchhhhhHHHHHHHH
Q 021653          200 QDN--------IGWGWGLGIPTFAMFL  218 (309)
Q Consensus       200 ~~~--------~gw~~~f~i~~~~~~~  218 (309)
                      ...        ..-|..+.+.++-.++
T Consensus       212 ~~~~~~~~~~~~~~r~~~~~~a~ww~v  238 (477)
T PF11700_consen  212 VISPGSTASNTWAIRVAFLIVALWWLV  238 (477)
T ss_pred             HHcCCCccccchhhhHHHHHHHHHHHH
Confidence            211        2235566665555433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.98  E-value=0.00022  Score=71.11  Aligned_cols=174  Identities=13%  Similarity=0.129  Sum_probs=113.1

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHH-HHHhHHHHHHHHHHhccc--hHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAG--RFWTITIASII   98 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~l~~G~laD~~~G--R~~~i~i~~~l   98 (309)
                      +..+...+..++....++++..++|.|+++++|++..+++.+.+...+ +..++.+++|+++||+ +  .|+.+.++.++
T Consensus       330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~  408 (633)
T TIGR00805       330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICL  408 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHH
Confidence            355556677778888889999999999999999999999999887665 5678999999999996 7  45677777766


Q ss_pred             HHHHHHHHHHHhhc------------C-------CCCCCCCCCccc----------------------------------
Q 021653           99 YQIGMICLTISAIL------------P-------QLRPPPCEGEQV----------------------------------  125 (309)
Q Consensus        99 ~~~g~~~~~~~~~~------------~-------~~~~~~~~~~~~----------------------------------  125 (309)
                      .+++.++....-++            |       .....+|..+..                                  
T Consensus       409 ~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~  488 (633)
T TIGR00805       409 STLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSN  488 (633)
T ss_pred             HHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCc
Confidence            66665443311000            0       000112321111                                  


Q ss_pred             ---------------------cccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH
Q 021653          126 ---------------------CQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (309)
Q Consensus       126 ---------------------~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~  184 (309)
                                           |+..=+.....|++..++..+..+....+.....-...|++      +|..+.+..++.
T Consensus       489 ~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~------~rs~alg~~~~~  562 (633)
T TIGR00805       489 MVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPE------EKSLAIGLQWLC  562 (633)
T ss_pred             ceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcc------cchHHhhHHHHH
Confidence                                 11000011334444445555555555555555566777777      688888887765


Q ss_pred             H-HHHHHHHHHHHHHhhcc
Q 021653          185 M-GAAILVAVTVLVYIQDN  202 (309)
Q Consensus       185 ~-~iG~~l~~~~~~~i~~~  202 (309)
                      + -+|.+-+|++.|++.|.
T Consensus       563 ~rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       563 MRVFATIPAPILFGLLIDV  581 (633)
T ss_pred             HHHhcCCChhHHHhhhhhc
Confidence            5 55778899999988774

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.79  E-value=0.0017  Score=52.87  Aligned_cols=104  Identities=13%  Similarity=0.229  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHH
Q 021653           63 TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLL  142 (309)
Q Consensus        63 ~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (309)
                      -.++......+..+++..+-++. |.|+++++|.+.+.+=.+... -.                      +.+.++.+-.
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~-~~----------------------~~~~l~~~s~   97 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFF-YP----------------------NSYTLYPASA   97 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH-hh----------------------hHHHHHHHHH
Confidence            34555666677777888888885 999999999887764332221 11                      5677888889


Q ss_pred             HHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021653          143 LAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (309)
Q Consensus       143 l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~  196 (309)
                      +.|+|.+..++....++.+..+++      .+++-.++++...+.+.++|..+.
T Consensus        98 l~G~~~a~lW~aqg~ylt~~s~~~------~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   98 LLGFGAALLWTAQGTYLTSYSTEE------TIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHhhhhHHhhHhhhHHHHHcCCHH------HHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999877655      567777766666666666655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.77  E-value=0.00018  Score=68.62  Aligned_cols=149  Identities=7%  Similarity=-0.042  Sum_probs=110.1

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 021653           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (309)
Q Consensus        51 ~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (309)
                      ++++-.+..-+.....-..+-.+.-++.+++-.++ |+-+++.++.....+=.+..+...                    
T Consensus       399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~--------------------  457 (618)
T KOG3762|consen  399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ--------------------  457 (618)
T ss_pred             hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc--------------------
Confidence            45554444334333333444456667888999996 999999999887777777777666                    


Q ss_pred             chhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhhccccchhhh
Q 021653          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF-VMGAAILVAVTVLVYIQDNIGWGWGL  209 (309)
Q Consensus       131 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~-~~~iG~~l~~~~~~~i~~~~gw~~~f  209 (309)
                        ++|+....-+++|+-.+.++.++.+|+++..|++      .+.++-+.... ...+|-.+|.++++.+.+.+|-+..|
T Consensus       458 --n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~------l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf  529 (618)
T KOG3762|consen  458 --NPWMVLPIEILQGITHALIWAAIISYASHVAPPG------LRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTF  529 (618)
T ss_pred             --CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCc------chHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHH
Confidence              7788888889999999999999999999999998      45555555433 34556666777788888888988899


Q ss_pred             hHHHHHHHHHHHHHHHhCc
Q 021653          210 GIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       210 ~i~~~~~~~~~~~~~~~~~  228 (309)
                      .+.++.+++.++.+....+
T Consensus       530 ~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  530 RIFGIACLVTLALFISIQL  548 (618)
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9888888777766655443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.76  E-value=7.4e-08  Score=91.57  Aligned_cols=183  Identities=15%  Similarity=0.090  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      .....+....+..+..+....+...++.+..+.++.  -.......+...++.+++.++.||+ |||+.++++.++..++
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            344444444444444333333444445556666665  1222233445556677778999996 9999999998887777


Q ss_pred             HHHHH-HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhh-cchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          103 MICLT-ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSG-GIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       103 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g-~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      .+.+. .....+.             .++..+... .+...+...+.+ +..+....+.+|.||++      .|++..+.
T Consensus       330 ~~~~~~~~~~~~~-------------~~~~~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~------~R~~~~~~  389 (451)
T PF00083_consen  330 SLILGIIFFLGVS-------------SSSWWSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTK------VRSTGIGL  389 (451)
T ss_pred             ccccccccccccc-------------ccccccccc-ceeeeecccccccccccccccccccccccc------cccccccc
Confidence            66664 1110000             000001111 111111212222 23345557889999998      68888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      .+....+++.+++.+..++.+..+-...+.+.+++.++..+..+...|
T Consensus       390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp  437 (451)
T PF00083_consen  390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP  437 (451)
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence            888888888888888777777666334455555544444444333333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.71  E-value=2.3e-06  Score=75.37  Aligned_cols=136  Identities=12%  Similarity=0.134  Sum_probs=110.1

Q ss_pred             HHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021653           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (309)
Q Consensus        43 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~  122 (309)
                      .-+..++..+.+++.++..++.++++.-..+.+.++|++.||.+|-|+.-++-+.+..+|.+..+....           
T Consensus        64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-----------  132 (459)
T KOG4686|consen   64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-----------  132 (459)
T ss_pred             hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-----------
Confidence            335566666666776777788888888889999999999999999998888888888888888775441           


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021653          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (309)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~  202 (309)
                              ....+++..+|++.|+|.-........|..-+|..+      +.+..++.+.-..-+|+.+-.++.+++.+.
T Consensus       133 --------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGK------ELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  133 --------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGK------ELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             --------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCc------cccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence                    127888999999999998888888889999999987      699999998888888888777777777664


Q ss_pred             c
Q 021653          203 I  203 (309)
Q Consensus       203 ~  203 (309)
                      .
T Consensus       199 ~  199 (459)
T KOG4686|consen  199 M  199 (459)
T ss_pred             H
Confidence            4

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.65  E-value=0.0017  Score=63.89  Aligned_cols=150  Identities=8%  Similarity=0.000  Sum_probs=101.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHH---HHHHHHHHHHHHHHhHHHHHHHHHHhccchHH-HHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLT---KAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-TITIAS   96 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~---~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~-~i~i~~   96 (309)
                      .|.+...+++.++..+.+|++....|......++-+..   ..+........+..++.++.|.+.-+. ||.| .+++++
T Consensus       309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~~~  387 (599)
T PF06609_consen  309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIFGS  387 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHHHH
Confidence            45666666777788888888887788777777766553   456666677777888888888888774 7755 445666


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhH
Q 021653           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (309)
Q Consensus        97 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  176 (309)
                      +++.++..+++...  |                +  +....+...++.|+|.|...........-..|++      ..+.
T Consensus       388 ~~~ta~~Gama~~~--~----------------~--n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~------~ig~  441 (599)
T PF06609_consen  388 VLMTAFCGAMAAVR--P----------------D--NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE------DIGT  441 (599)
T ss_pred             HHHHHHHHHHHHcc--C----------------C--CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch------HHHH
Confidence            66665555555433  1                1  2223345567888888887655555444444543      6888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 021653          177 YFNWYYFVMGAAILVAVTVLV  197 (309)
Q Consensus       177 ~~~~~~~~~~iG~~l~~~~~~  197 (309)
                      ..+.......+|+.++..+..
T Consensus       442 a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  442 ATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHHHHHHHHhhHHHHHHHH
Confidence            888888888888888876643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.64  E-value=0.00011  Score=69.03  Aligned_cols=169  Identities=15%  Similarity=0.078  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHhHHhcCCCHHH--------HHHHHHHHHHHHHh-HHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTK--------AANTLTNFGGTGSL-TPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~--------~~~~~~~~~~~~~~-~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      .-++...++|+...+...-++ ..++.+.+        .+....+...+..+ +..++..+.|+. ||++..+.+.+++.
T Consensus       312 ~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq~~GF~~~~  389 (538)
T KOG0252|consen  312 TWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQLMGFFIMT  389 (538)
T ss_pred             HHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHHHhhHHHHH
Confidence            334445566666555554443 33433322        22223333333333 667788889995 99999999888777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      +-.+.++...+          +     ...  ..+.+...-+.+-++.-+-.+....+-+|.||++      -|+...++
T Consensus       390 i~~~~~~~~y~----------~-----~~~--~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar------vR~t~hGI  446 (538)
T KOG0252|consen  390 IFFFVIAGPYN----------Q-----LEN--TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR------VRSTCHGI  446 (538)
T ss_pred             HHHHHHcCCcc----------c-----ccc--cCceeehHHHHHHHHhcCCCceeEEeehhhchHH------HhhhhhhH
Confidence            65555554331          0     001  1111222222233333333444455557999998      79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-----cccchhhhhHHHHHHHHHHHHH
Q 021653          181 YYFVMGAAILVAVTVLVYIQD-----NIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~-----~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      .-.+.-+|++++.....++++     ..+.++.|++.+.+..++.+..
T Consensus       447 sAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T  494 (538)
T KOG0252|consen  447 SAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT  494 (538)
T ss_pred             HHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee
Confidence            999999999999999999998     7789999999999888776543

>TIGR01272 gluP glucose/galactose transporter

Probab=97.64  E-value=0.00031  Score=63.82  Aligned_cols=84  Identities=8%  Similarity=-0.168  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc----------
Q 021653          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN----------  202 (309)
Q Consensus       133 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~----------  202 (309)
                      ++..+.++.++.|.|.+..++..++++++..+++      ++.+..++.+....+|+.++|.+.+.+...          
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~   82 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIE------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA   82 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence            7888999999999999999999999999998876      588888999999999999999998876632          


Q ss_pred             ------ccchhhhhHHHHHHHHHHHH
Q 021653          203 ------IGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       203 ------~gw~~~f~i~~~~~~~~~~~  222 (309)
                            ..|+++|++.+++..+..++
T Consensus        83 ~~~~~~~~~~~~yl~ia~~~~~~~i~  108 (310)
T TIGR01272        83 TANAEAAKVHTPYLLLAGALAVLAII  108 (310)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  36888888666554443333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PTZ00207 hypothetical protein; Provisional

Probab=97.61  E-value=0.001  Score=65.53  Aligned_cols=177  Identities=14%  Similarity=0.063  Sum_probs=115.4

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhc-CCCHHH--HHHHHHHHHHHHHhHHHHHHHHHHhccchHH--------
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQL-HMPLTK--AANTLTNFGGTGSLTPLIGAFVADAYAGRFW--------   90 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~-~~s~~~--~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~--------   90 (309)
                      ..+|++....+|..-.-..+..|+- +.-+.+ |.+...  ....++.+.++.++|-+.+|.++.. .-||+        
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~-~~~~~~~~r~prt  430 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW-SQKRRAEDRVPIT  430 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH-HHhhccccccchh
Confidence            3566666666665544444445553 444556 663322  2237899999999999999999832 23332        


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChh
Q 021653           91 -TITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK  169 (309)
Q Consensus        91 -~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~  169 (309)
                       .+.+..+ ..++.+++++..                      ....++++-++.|++.|..+++.++..+|.|- +   
T Consensus       431 ~~l~~~~~-~~~~~lll~~~~----------------------p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k---  483 (591)
T PTZ00207        431 IALFIPSV-CIITMLTLFLTL----------------------PKAALPLPYFIAAFANGFMAATIALVTRTIFA-K---  483 (591)
T ss_pred             HHHHHHHH-HHHHHHHHHHHC----------------------CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-c---
Confidence             2333333 555556555543                      22568999999999999999999999999999 5   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHH-HHHHHHhhcc-------------ccchhhhhHHHHHHHHHHHHHHHhCcce
Q 021653          170 QATKTWKYFNWYYFVMGAAILVA-VTVLVYIQDN-------------IGWGWGLGIPTFAMFLSIIAFLIGYPLY  230 (309)
Q Consensus       170 ~~~~r~~~~~~~~~~~~iG~~l~-~~~~~~i~~~-------------~gw~~~f~i~~~~~~~~~~~~~~~~~~~  230 (309)
                         .-|..++..+.+.-+|+.+= -.+.|.+-|.             .-++.+|.+.+.+.+++.++-....-|+
T Consensus       484 ---~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~  555 (591)
T PTZ00207        484 ---DPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY  555 (591)
T ss_pred             ---chHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence               37888888777777777653 3345544321             1267888888888777776654443333

>PRK03612 spermidine synthase; Provisional

Probab=97.56  E-value=0.02  Score=55.82  Aligned_cols=152  Identities=11%  Similarity=0.036  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH---HH
Q 021653           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM---IC  105 (309)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~---~~  105 (309)
                      +..++..++.........-.+...+|-+....+.+++++.++..+|+.+++.++++. -|+.. .+-..+.+++.   .+
T Consensus        21 ~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~-~~e~~i~l~~~~~~~l   98 (521)
T PRK03612         21 AAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFV-AVELLLALLGGLSALI   98 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHH-HHHHHHHHHHHHHHHH
Confidence            334444444444445555556667888999999999999999999999999887553 23322 11111111111   11


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHH
Q 021653          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (309)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~  185 (309)
                      +.....+                 .......++...++.++-.|+..|.+..+..+....       +-+...+..|...
T Consensus        99 l~~~~~~-----------------~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~-------~~g~~~g~ly~~n  154 (521)
T PRK03612         99 LYAAFAF-----------------QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQ-------HLGHNVATVLAAD  154 (521)
T ss_pred             HHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------chhhhhhhhHhHH
Confidence            1111100                 000112223334556777777766666655443221       2344556667778


Q ss_pred             HHHHHHHHHHHHHh-hccccch
Q 021653          186 GAAILVAVTVLVYI-QDNIGWG  206 (309)
Q Consensus       186 ~iG~~l~~~~~~~i-~~~~gw~  206 (309)
                      ++|+++|.++.+++ ...+|-.
T Consensus       155 tlGa~~G~l~~~~vLlp~lG~~  176 (521)
T PRK03612        155 YLGALVGGLAFPFLLLPRLGLI  176 (521)
T ss_pred             hHHHHHHHHHHHHHHHHhcchH
Confidence            88888888887754 3456644

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.44  E-value=0.00023  Score=62.44  Aligned_cols=96  Identities=19%  Similarity=0.160  Sum_probs=69.6

Q ss_pred             HHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 021653           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (309)
Q Consensus        45 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  124 (309)
                      ...|+.+.+++...+.+.+.-.-.+...+...+.|-++|+. |||+..+..++    .+++..+..+.|           
T Consensus        59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyci----tYiLsCiTKhSp-----------  122 (454)
T KOG4332|consen   59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCI----TYILSCITKHSP-----------  122 (454)
T ss_pred             eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehH----HHHHHHHhhcCC-----------
Confidence            34566678888888888887777777777788889999996 99997665544    444555554222           


Q ss_pred             ccccccchhHHHHHHHHHHHHHhhhcchhhhhhh-hhcccC
Q 021653          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAF-GADQFD  164 (309)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~-~ad~~~  164 (309)
                              ++-.+++||++-|+.++...+..-++ ++|.-+
T Consensus       123 --------qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne  155 (454)
T KOG4332|consen  123 --------QYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE  155 (454)
T ss_pred             --------ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence                    56678999999999999877665553 455543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.38  E-value=0.006  Score=56.95  Aligned_cols=128  Identities=13%  Similarity=-0.049  Sum_probs=86.4

Q ss_pred             HHHHHHHhHHhcCC---CHH----HHHHHHHHHHHHHHhHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHhhcC
Q 021653           42 NTNMISYLTTQLHM---PLT----KAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-TITIASIIYQIGMICLTISAILP  113 (309)
Q Consensus        42 ~~~l~~yl~~~~~~---s~~----~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~-~i~i~~~l~~~g~~~~~~~~~~~  113 (309)
                      ...+|+|+++..+-   ++.    -.+...++......+.+++-|-++|.. |+|| .+-....+.++.+.++.+..   
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~---  110 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP---  110 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC---
Confidence            34578999876654   332    345556677777788889999999997 8655 44455555566666666554   


Q ss_pred             CCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHH
Q 021653          114 QLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV  193 (309)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~  193 (309)
                                      +........+...+..++..+......+++.|..+++      +.++..+.-+-...+|+.+..
T Consensus       111 ----------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~------~~~riS~lg~~~gylgs~i~l  168 (438)
T COG2270         111 ----------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKD------NMGRISGLGWALGYLGSVILL  168 (438)
T ss_pred             ----------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCcc------ccCcccccccccccccchHHH
Confidence                            1124455555667778999999999999999988876      345555555556677776654


Q ss_pred             HH
Q 021653          194 TV  195 (309)
Q Consensus       194 ~~  195 (309)
                      +.
T Consensus       169 i~  170 (438)
T COG2270         169 IF  170 (438)
T ss_pred             HH
Confidence            44

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.36  E-value=0.029  Score=54.57  Aligned_cols=122  Identities=8%  Similarity=-0.003  Sum_probs=81.5

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 021653           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (309)
Q Consensus        51 ~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (309)
                      ..+|.+......+...   .........+..-|+. |||.....+.++..++.++......                   
T Consensus       346 ~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~-------------------  402 (521)
T KOG0255|consen  346 SGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPD-------------------  402 (521)
T ss_pred             hhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhc-------------------
Confidence            3455555444333333   3444445568899996 9999999999999888888887651                   


Q ss_pred             chhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021653          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (309)
Q Consensus       131 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~  201 (309)
                      ........+...+...+.+........+.+|.+|+.      .|....+.......+|++++|.+......
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~------~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  403 DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTV------VRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            111112223333334444555556688889999988      68999998888899999998877654443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.29  E-value=0.024  Score=54.80  Aligned_cols=120  Identities=13%  Similarity=-0.011  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhccchH-H------HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccch
Q 021653           60 AANTLTNFGGTGSLTPLIGAFVADAYAGRF-W------TITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKG  132 (309)
Q Consensus        60 ~~~~~~~~~~~~~~~~l~~G~laD~~~GR~-~------~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (309)
                      +++..+.-.+...+.+++.+++=.|. +|| +      =+.+|+++..+|.+.+.++.....             .....
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~-------------~~~~~  375 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSA-------------MYGHS  375 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC-------------CCCCc
Confidence            34455555555566666666665553 332 1      156677777888777776552111             00123


Q ss_pred             hHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 021653          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV-MGAAILVAVTVLVYI  199 (309)
Q Consensus       133 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~-~~iG~~l~~~~~~~i  199 (309)
                      +...+.+..++.++|.-+..|...+++++..|++      -+|.+++.+++. ..+|..++..+.+..
T Consensus       376 s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~------~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        376 SLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPG------VTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             CHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666777888899999999999999999999987      799999988774 467777776665554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.28  E-value=0.0019  Score=60.63  Aligned_cols=155  Identities=15%  Similarity=0.126  Sum_probs=89.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 021653           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-TITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (309)
Q Consensus        52 ~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~-~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (309)
                      .-|+++..+|.+.....+...++++++|.++||. ..++ ++++......++...+...+..+                 
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~~~~l~~~t~~~-----------------  356 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVGTLMLLTCTLFL-----------------  356 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhccC-----------------
Confidence            4577778899999999999999999999999996 5544 44444444444432222111111                 


Q ss_pred             chhHHHHHHHHHHHHHhhhcchhhhhhhhhcc-cCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc----c
Q 021653          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQ-FDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG----W  205 (309)
Q Consensus       131 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~-~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~g----w  205 (309)
                       ...+.++....+.|+...+..|.-.-+..|. +|..+       +.-.+..+...++-+.+-.+..+...+..+    |
T Consensus       357 -~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~  428 (480)
T KOG2563|consen  357 -GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNT  428 (480)
T ss_pred             -CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCC
Confidence             1334455555667777777777777777666 55432       122233333344444444455555555555    4


Q ss_pred             hhhhhHHHHHHHHHHHHHHHhCcceec
Q 021653          206 GWGLGIPTFAMFLSIIAFLIGYPLYRN  232 (309)
Q Consensus       206 ~~~f~i~~~~~~~~~~~~~~~~~~~~~  232 (309)
                      ...-+.......+..++.++.++.|++
T Consensus       429 ~~~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  429 FPANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             ccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence            444444555555555566666666653

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.26  E-value=0.00029  Score=66.07  Aligned_cols=167  Identities=13%  Similarity=0.102  Sum_probs=107.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhc---cchHHHHH-HHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWTIT-IASI   97 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~---~GR~~~i~-i~~~   97 (309)
                      +.+..+..+.+...+++-.=.+++++|++ .+|.+..-.+.+-..--+...+.+++.|..+||.   +||||-.+ .+.+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            34444444455555555444566777775 7788877766666666667778889999999984   69876554 4555


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHH
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  177 (309)
                      ...++..+...+..+-...   |+....|  .......++.++..+.=+..-..+.+.-++.+|....++     ++.+.
T Consensus       111 ~i~~~l~Lig~aaDig~~l---gd~~~~~--~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~-----~~~~A  180 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLL---GDNERKP--VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA-----KKTRA  180 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHh---cCCcccc--cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh-----hhhcc
Confidence            5666666666555221111   1111111  122356677788888888887888888999999987653     22227


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 021653          178 FNWYYFVMGAAILVAVTVLVYI  199 (309)
Q Consensus       178 ~~~~~~~~~iG~~l~~~~~~~i  199 (309)
                      .+++.+...+|+.+|....+|.
T Consensus       181 ns~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  181 NSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             chhHHHHHHhcceeeeeccccc
Confidence            7788888999998887776643

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.25  E-value=0.006  Score=44.09  Aligned_cols=73  Identities=7%  Similarity=0.042  Sum_probs=62.0

Q ss_pred             HHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Q 021653           33 CEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (309)
Q Consensus        33 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~  110 (309)
                      +.||+|    +.+.+.++++.++|..+++.+.+...+++.+|++...++.++. .+++.+..+.++..+.++.+.+..
T Consensus         6 igRFay----TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    6 IGRFAY----TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hHHHHH----HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455654    2355677899999999999999999999999999999999985 888999999988888888888765

Note that many members are hypothetical proteins.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.21  E-value=0.0056  Score=56.49  Aligned_cols=151  Identities=12%  Similarity=0.127  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHh-HHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHH-HHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYL-TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITI-ASIIYQ  100 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i-~~~l~~  100 (309)
                      ..+.++....+.....|....+...++ .+.+++++.+.+.+.+....+..+.++.-+...|++.|.-+.... +..+..
T Consensus       261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v  340 (451)
T KOG2615|consen  261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV  340 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence            344455544444444455555555555 467999999999998888888888888888888987454444443 333333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      -..+++....                      ....++.+..+-.+..+...++...++....|.+      +||+..+.
T Consensus       341 P~~llls~~~----------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~------qrG~~~Gi  392 (451)
T KOG2615|consen  341 PAFLLLSLAR----------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQS------QRGTLNGI  392 (451)
T ss_pred             HHHHHHhccc----------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcc------cchHHHHH
Confidence            3334444333                      4567888889999999999999999999988887      89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 021653          181 YYFVMGAAILVAVTVLVYIQD  201 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~  201 (309)
                      ......++=.+||.+.|.+..
T Consensus       393 ~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  393 FRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHHHHhhhhhhheeEE
Confidence            988899999999999877654

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.10  E-value=0.077  Score=49.91  Aligned_cols=152  Identities=11%  Similarity=0.033  Sum_probs=95.0

Q ss_pred             hHHHHHHHhHHh-cCCCHHHHHH-HHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021653           41 FNTNMISYLTTQ-LHMPLTKAAN-TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPP  118 (309)
Q Consensus        41 ~~~~l~~yl~~~-~~~s~~~~~~-~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~  118 (309)
                      .-.++..|+++. .|++..+... +.-++.-.....-++...++|.. |.|++++++.+..++...++.+..        
T Consensus        22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~--------   92 (412)
T PF01770_consen   22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT--------   92 (412)
T ss_pred             CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC--------
Confidence            346678899887 8999887654 45555555666677889999985 999999999998888888877766        


Q ss_pred             CCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021653          119 PCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY  198 (309)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~  198 (309)
                                    +...+-+.-++-|++.+. .....+|+=-..|++      +..+..+....+.-+|-.++.+++-.
T Consensus        93 --------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~------~yq~vts~~raa~l~g~~~s~~lgQl  151 (412)
T PF01770_consen   93 --------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKE------HYQKVTSYTRAATLVGRFISSLLGQL  151 (412)
T ss_pred             --------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          666666666666766654 233344443333433      34444444444444555554444433


Q ss_pred             hhc--cccchhhhhHHHHHHHHHHHH
Q 021653          199 IQD--NIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       199 i~~--~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      +..  ..++.....+......+++++
T Consensus       152 lvs~~~~sy~~L~~isl~~~~~a~~~  177 (412)
T PF01770_consen  152 LVSFGGVSYFQLNYISLASVSLALLI  177 (412)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            332  334555556666555555544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.03  E-value=0.012  Score=56.45  Aligned_cols=127  Identities=14%  Similarity=0.188  Sum_probs=104.5

Q ss_pred             HHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 021653           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (309)
Q Consensus        44 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  123 (309)
                      .+..|+...++++..+.+...+...+...++.++...+--+.+|-++++.+|.+...++..+.++++             
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-------------  329 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-------------  329 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-------------
Confidence            4567778899999999999999999999999998874444446999999999999999999999988             


Q ss_pred             cccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021653          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (309)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i  199 (309)
                               +.++++.+..+.++ .+...+...++.+.+.+.+      ++|+.+++......+.+++++.+-+.+
T Consensus       330 ---------~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~------e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  330 ---------ETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPE------EQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             ---------cchhhhHHHHHHHh-hcchhHHHHhHHHhhcccc------cccchhhHHHHHHHHhhhhhHHHHHHH
Confidence                     77777777666554 3455677778888888877      799999999999999999998886655

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.01  E-value=0.065  Score=50.91  Aligned_cols=143  Identities=12%  Similarity=0.020  Sum_probs=111.1

Q ss_pred             HHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 021653           33 CEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAIL  112 (309)
Q Consensus        33 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~  112 (309)
                      +-.+..-+....+..|+..+ |+++...+..-+.-.+....+.++..++-+|+ |.-|+=+++.........+...+-+.
T Consensus       269 lLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~  346 (432)
T PF06963_consen  269 LLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWA  346 (432)
T ss_pred             HHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhc
Confidence            33444445566678898866 99999999998888899999999999999996 99999999888877776666665544


Q ss_pred             CCCCCCCCCCccccccc-cchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHH
Q 021653          113 PQLRPPPCEGEQVCQEA-NKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILV  191 (309)
Q Consensus       113 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l  191 (309)
                      |.             +| +..+...++.+.++.=+|.=++.-++..++-|..|++      +||.+.+...-..++-.++
T Consensus       347 ~~-------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~------~Rg~v~gvq~sl~~lf~ll  407 (432)
T PF06963_consen  347 PG-------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPES------ERGAVSGVQNSLQSLFELL  407 (432)
T ss_pred             CC-------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHH------HhhHHHHHHHHHHHHHHHH
Confidence            33             11 2346667777777777888888888999999988877      7999999988888888877


Q ss_pred             HHHHH
Q 021653          192 AVTVL  196 (309)
Q Consensus       192 ~~~~~  196 (309)
                      ...+.
T Consensus       408 ~~~~~  412 (432)
T PF06963_consen  408 SFVLT  412 (432)
T ss_pred             HHHHH
Confidence            65553

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.71  E-value=0.031  Score=55.98  Aligned_cols=83  Identities=16%  Similarity=0.251  Sum_probs=62.2

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHH-HHHhHHHHHHHHHHhc-cchHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAY-AGRFWTITIASIIY   99 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~l~~G~laD~~-~GR~~~i~i~~~l~   99 (309)
                      +...+.++...++...+.+..+++|-|+.++|+.+.+.+..+.+...+ +..+|.+++|++.-|+ +.-|.+....++..
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~  471 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS  471 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence            345566678888999999999999999999999999999998866655 4467788999999885 34455554444444


Q ss_pred             HHHHH
Q 021653          100 QIGMI  104 (309)
Q Consensus       100 ~~g~~  104 (309)
                      ++.++
T Consensus       472 ~l~l~  476 (735)
T KOG3626|consen  472 VLSLL  476 (735)
T ss_pred             HHHHH
Confidence            44333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.55  E-value=0.66  Score=44.71  Aligned_cols=164  Identities=11%  Similarity=0.027  Sum_probs=89.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCH-----HHHHHHHHHHHHHHH-hHHHHHHHHHHhccchHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPL-----TKAANTLTNFGGTGS-LTPLIGAFVADAYAGRFWTITI   94 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~-----~~~~~~~~~~~~~~~-~~~l~~G~laD~~~GR~~~i~i   94 (309)
                      ++....+.+..++..+.++...     -+.+.+.++.     .....+-+.....+. +..++.+++++|+ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            4455555555555555554322     2344555422     233444443333333 3367889999996 99998887


Q ss_pred             HHHHHHHHHHHHHHHhhcCC---CCCC-CCCCcccccccc----------chhHHHHHHHHHHHHHhhhcchhhhhhhhh
Q 021653           95 ASIIYQIGMICLTISAILPQ---LRPP-PCEGEQVCQEAN----------KGQVAILYVSLLLAALGSGGIRPCVVAFGA  160 (309)
Q Consensus        95 ~~~l~~~g~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~l~gig~g~~~~~~~~~~a  160 (309)
                      ....+..-.++.++.- .|.   +++. .|+.... ..+.          +.....||+..=+  .|.-..+-.-..+..
T Consensus        80 ~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~~-~~~~~~~~~i~~~~~W~~~~FYv~~el--w~~~vvS~lFW~fan  155 (472)
T TIGR00769        80 VISPFLGFFALFAFVI-YPLSDLLHPTALADKLLS-LLPPGFMGFIAILRIWSFALFYVMAEL--WGSVVLSLLFWGFAN  155 (472)
T ss_pred             HHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHHh-hcchhhHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            6666655555554432 111   1110 0000000 0000          1122233332211  111122225677889


Q ss_pred             cccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021653          161 DQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (309)
Q Consensus       161 d~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~  200 (309)
                      |.+..+      +-.++++.+..+.|+|.++++.+..++.
T Consensus       156 di~t~~------qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       156 QITTID------EAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             hcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999877      7899999999999999999998877765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.18  E-value=0.0013  Score=64.40  Aligned_cols=174  Identities=11%  Similarity=0.123  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHH-HHHhHHHHHHHHHHhc-cchHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAY-AGRFWTITIASIIYQ  100 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~l~~G~laD~~-~GR~~~i~i~~~l~~  100 (309)
                      ...++.+...++.+...++.+++|-|++.+|++++++++.+.+...+ +..+|.+++|++..|+ ++.|..+....+..+
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~  385 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI  385 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence            34444566777888888999999999999999999999998877655 6678889999999986 344555554444444


Q ss_pred             HHHHHHHHH----hh---c-----CC----C------CCCCCC----------CccccccccchhHHHHHHHHHHHHHhh
Q 021653          101 IGMICLTIS----AI---L-----PQ----L------RPPPCE----------GEQVCQEANKGQVAILYVSLLLAALGS  148 (309)
Q Consensus       101 ~g~~~~~~~----~~---~-----~~----~------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~gig~  148 (309)
                      ++.++....    ..   +     |.    -      ...+|.          ..+.|...-......|.+..++..+..
T Consensus       386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~  465 (539)
T PF03137_consen  386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT  465 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence            433331110    00   0     11    0      011121          013343331223455555555555555


Q ss_pred             hcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Q 021653          149 GGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV-MGAAILVAVTVLVYIQDN  202 (309)
Q Consensus       149 g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~-~~iG~~l~~~~~~~i~~~  202 (309)
                      +..........-...+++      +|+.+.+..... .-+|.+-+|++.|.+.|.
T Consensus       466 ~~~~~p~~~i~LR~V~~~------~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  466 FMSQVPSTLITLRCVPPE------QRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -------------------------------------------------------
T ss_pred             HhcccchheeeeccCChh------hcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            555555555556777776      688888877654 456778899999888875

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.97  E-value=0.014  Score=55.83  Aligned_cols=197  Identities=9%  Similarity=-0.009  Sum_probs=122.4

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHH--HHHHHHHHhc--cchHHHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTP--LIGAFVADAY--AGRFWTIT   93 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~--l~~G~laD~~--~GR~~~i~   93 (309)
                      +-.|+..+.++...+...+.+..+.+..+.+....++++..++....+.......+.+  +...+..-+.  +.+|..++
T Consensus       258 ~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~  337 (488)
T KOG2325|consen  258 KLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIIL  337 (488)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeee
Confidence            5578888888888888888887767767777777888888776555544433332222  1222223332  13345555


Q ss_pred             HHHHHHHHHHHHHHHH-h--hcCCC----CCCCCC--CccccccccchhHHHHHHHH-HHHHHhhhcchhhhhhhhhccc
Q 021653           94 IASIIYQIGMICLTIS-A--ILPQL----RPPPCE--GEQVCQEANKGQVAILYVSL-LLAALGSGGIRPCVVAFGADQF  163 (309)
Q Consensus        94 i~~~l~~~g~~~~~~~-~--~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~-~l~gig~g~~~~~~~~~~ad~~  163 (309)
                      .++.+......+.... .  +.|-.    ....|.  .+.=|......+...++.+. ++.|++.-.+.....+.-+++.
T Consensus       338 ~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiL  417 (488)
T KOG2325|consen  338 LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKIL  417 (488)
T ss_pred             ehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHh
Confidence            5433333322222211 0  01111    112232  23557777777777777665 4567777777888888899999


Q ss_pred             CCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Q 021653          164 DETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (309)
Q Consensus       164 ~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~  220 (309)
                      .+.      ..+..-+++.....++..++|++...+-...|.++.+.+.+...++..
T Consensus       418 gp~------~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~  468 (488)
T KOG2325|consen  418 GPR------DQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVA  468 (488)
T ss_pred             CCc------cccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHH
Confidence            887      477777888888889999999988888777787776666555544433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.78  E-value=0.33  Score=46.49  Aligned_cols=142  Identities=15%  Similarity=0.029  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhccchH-------HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHH
Q 021653           63 TLTNFGGTGSLTPLIGAFVADAYAGRF-------WTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVA  135 (309)
Q Consensus        63 ~~~~~~~~~~~~~l~~G~laD~~~GR~-------~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (309)
                      ..+.-.+...+.+++..++--+. |++       .-+-++.+++..+.+++......-            -+.+...+.+
T Consensus       329 fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~------------~~~~~~~s~~  395 (498)
T COG3104         329 FQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF------------GGPSGLVSVW  395 (498)
T ss_pred             HHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh------------cCCCCCcCHH
Confidence            34444444445555556665552 333       123345555555655555542000            0002334778


Q ss_pred             HHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------hhccccchhhh
Q 021653          136 ILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY------IQDNIGWGWGL  209 (309)
Q Consensus       136 ~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~------i~~~~gw~~~f  209 (309)
                      +++.+.+++++|.=+.+++...+.+...|+.      -.+..++.+.+....|..++-.+.+.      ..+.......|
T Consensus       396 ~lil~y~l~s~gEL~iSpvGLs~~t~laP~~------~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F  469 (498)
T COG3104         396 WLVLSYVLQSFGELFISPVGLSMVTKLAPPA------LKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVF  469 (498)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhH
Confidence            8888899999999999999999999999986      68888888888888888877666552      12223344556


Q ss_pred             hHHHHHHHHHHHHH
Q 021653          210 GIPTFAMFLSIIAF  223 (309)
Q Consensus       210 ~i~~~~~~~~~~~~  223 (309)
                      +..+...++..+.+
T Consensus       470 ~~~g~v~i~~~~~~  483 (498)
T COG3104         470 GTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66555544443333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.48  E-value=0.036  Score=53.43  Aligned_cols=66  Identities=15%  Similarity=0.217  Sum_probs=50.9

Q ss_pred             hhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH-HHHHHH
Q 021653           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI-GMICLT  107 (309)
Q Consensus        40 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~-g~~~~~  107 (309)
                      .+...++.|+ .++|+++++.+.++.+--+..++++++.|++|||| -++|-++++..+..+ ..+++.
T Consensus        29 ~l~pll~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~fll~   95 (618)
T KOG3762|consen   29 SLFPLLAVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATFLLV   95 (618)
T ss_pred             ccchHHHHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHhee
Confidence            4556677777 58999999999999999999999999999999998 655555555554443 334443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.47  E-value=0.31  Score=48.93  Aligned_cols=183  Identities=11%  Similarity=-0.076  Sum_probs=124.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchh
Q 021653           54 HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ  133 (309)
Q Consensus        54 ~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (309)
                      +..........+++.....+..+.....+|-.-|+...+..-.+..+++.+...+.. ++.             .+....
T Consensus        16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a-------------~~~~~~   81 (654)
T TIGR00926        16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGA-------------IPSSGH   81 (654)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hcc-------------Cccccc
Confidence            344456677888999999999999999999987677777777777777777776655 211             012122


Q ss_pred             HHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chh-----
Q 021653          134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG-WGW-----  207 (309)
Q Consensus       134 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~g-w~~-----  207 (309)
                      .....++.+.+.++.++.-++.+.+.+++.+.-+   .+++.+..++|++..+.+.+. .+++..+..... +..     
T Consensus        82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~~  157 (654)
T TIGR00926        82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGCQ  157 (654)
T ss_pred             chHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccC
Confidence            3445667778899999999999999999998752   445668999999999988765 556666665443 332     


Q ss_pred             -hhh-HHHHHHHHHHHHHHHhCcceeccCCCCChhHHHHHHHHHHHHcC
Q 021653          208 -GLG-IPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR  254 (309)
Q Consensus       208 -~f~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (309)
                       +|. ..++..++.++.+......++..++.+.....+.++........
T Consensus       158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~  206 (654)
T TIGR00926       158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTAL  206 (654)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHH
Confidence             233 44445555555666666666666666655555666655554444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.42  E-value=0.34  Score=46.35  Aligned_cols=99  Identities=10%  Similarity=0.155  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHH
Q 021653           64 LTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLL  143 (309)
Q Consensus        64 ~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  143 (309)
                      .++......+..++++.+-|.. |.|+.+.++...+..-.+.....                       +.+.+|.+-.+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-----------------------N~y~~yfssal  111 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-----------------------NSYYLYFSSAL  111 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-----------------------chHHHHHHHHH
Confidence            5566777778889999999995 99999999988776543333221                       56778899999


Q ss_pred             HHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHH
Q 021653          144 AALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA  192 (309)
Q Consensus       144 ~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~  192 (309)
                      .|+|.+..+.-.-.+++|....+      .+.+-.+..+...+.+.++|
T Consensus       112 lG~Gaallw~GqG~ylt~~st~~------tie~Nisi~Wai~~~~li~G  154 (461)
T KOG3098|consen  112 LGFGAALLWTGQGGYLTSNSTRE------TIERNISIFWAIGQSSLIIG  154 (461)
T ss_pred             hhhhHHheecccceehhhcCChh------hHHHHHHHHHHHHHHHHHhh
Confidence            99999999988888888887766      45555555544444444444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.41  E-value=0.96  Score=43.34  Aligned_cols=115  Identities=18%  Similarity=0.126  Sum_probs=69.7

Q ss_pred             HHHHHHhHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHH
Q 021653           67 FGGTGSLTPLIGAFVADAY--AGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLA  144 (309)
Q Consensus        67 ~~~~~~~~~l~~G~laD~~--~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  144 (309)
                      ...+..++.++.+.+++|.  +||++++.++..+..++.++..+..  |...|-.- . ..-+...+.+.....+--++.
T Consensus       288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~~~-t-~~~~~~~~~~~~~~~ii~~l~  363 (461)
T KOG3098|consen  288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPLRP-T-DSPPLLFTPSYYLALIIGFLL  363 (461)
T ss_pred             HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCCCCC-C-cccccccccchhHHHHHHHHH
Confidence            3444455666677777552  5999999999999998888777654  21111000 0 000001111333444445788


Q ss_pred             HHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHH
Q 021653          145 ALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA  192 (309)
Q Consensus       145 gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~  192 (309)
                      |+|-++..+....++++.+|.+       |...++.+-+-..+++.++
T Consensus       364 G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  364 GFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999654       5555555544444444443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=95.38  E-value=0.54  Score=43.81  Aligned_cols=158  Identities=14%  Similarity=0.041  Sum_probs=93.0

Q ss_pred             cCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH-----hccchHHH
Q 021653           17 QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD-----AYAGRFWT   91 (309)
Q Consensus        17 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD-----~~~GR~~~   91 (309)
                      .|+..+.+.++++..+++..- +|....+|..++ .-|.|-++.+.....  .--+-.-++.+++-|     | +||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS~a--y~P~sLKllWaPiVDs~y~k~-~Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFSFA--YWPFSLKLLWAPIVDSVYSKR-FGRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhhhh--hhHHHHHHHHHhhhHHHHHHh-hccccc
Confidence            466677888888887777654 455555555554 556666665433222  122334568888889     7 599998


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhh
Q 021653           92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (309)
Q Consensus        92 i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~  171 (309)
                      .++=+ -+.+|..+..++...+....       ..+..  .+........++.-++.+.....+-...-.+..++     
T Consensus       101 Wvvp~-q~llG~~mllLs~~v~~~~g-------~ng~~--p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e-----  165 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSYLVDRGLG-------GNGGL--PNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRE-----  165 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhhCCCcccc-------cCCCC--cchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHh-----
Confidence            87655 35667777777763332211       01111  12222323334555555555556666655555554     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHH
Q 021653          172 TKTWKYFNWYYFVMGAAILVAVTV  195 (309)
Q Consensus       172 ~~r~~~~~~~~~~~~iG~~l~~~~  195 (309)
                       +.|-+......+.+.|.+++..+
T Consensus       166 -~lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  166 -NLGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             -hcCchhHHHHHHHhhhHHhhcce
Confidence             56666667777888888887665

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.94  E-value=0.58  Score=43.99  Aligned_cols=123  Identities=18%  Similarity=0.190  Sum_probs=72.3

Q ss_pred             HHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHh
Q 021653           68 GGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALG  147 (309)
Q Consensus        68 ~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig  147 (309)
                      .+-..+.-+++-+.-+|. --+.=+.+..++..+|.++.+++.                      +.++-++|.++.+++
T Consensus        69 i~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~~----------------------~v~~~l~Gv~las~s  125 (402)
T PF02487_consen   69 ILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFSP----------------------SVWVRLLGVVLASLS  125 (402)
T ss_pred             HHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeecc----------------------chhHHHHHHHHHhhh
Confidence            334445556667777774 322223444556777777777665                      666777888999999


Q ss_pred             hhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccc--hhhhhHHHHHHHHHHHHHHH
Q 021653          148 SGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGW--GWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       148 ~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw--~~~f~i~~~~~~~~~~~~~~  225 (309)
                      .|........+.+ -+++.          ..+.|..+...++++|...-..+.+ .|+  |..+.+...+.++-.+.++.
T Consensus       126 sg~GE~tfL~lt~-~y~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~  193 (402)
T PF02487_consen  126 SGLGEVTFLSLTH-FYGKS----------SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFF  193 (402)
T ss_pred             hhhhHHHHHHHHH-hcCcc----------ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9998877777644 45543          1344555556666666554333333 444  55666655554443334433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.85  E-value=6.3  Score=37.61  Aligned_cols=187  Identities=9%  Similarity=-0.097  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~  103 (309)
                      .+.+....++.++..=.+.--.+.|+.+-+.-+.--.+.....-.+...++.+..|..-||. -|.+++..+.+..-+..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence            34455555665555544444567777766554554445445555666677778888999996 99998887766554433


Q ss_pred             HHHHHH----hhcCCCCCCCCCCccccccccchhHHHHHH-HHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653          104 ICLTIS----AILPQLRPPPCEGEQVCQEANKGQVAILYV-SLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus       104 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      +..+..    -..+..           ...++.....+++ ..++.++.-=+......+.--|+...-..+++..+...-
T Consensus        83 ~~s~~~~~~l~~~~~~-----------~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~N  151 (432)
T PF06963_consen   83 AASCALFLLLLSYPSS-----------SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMN  151 (432)
T ss_pred             HHHHHHHHHHHhCCcc-----------ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHH
Confidence            322211    100100           0000111222222 222222222111222222333443322111122344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~  222 (309)
                      +..-=.=-+.-+++|++.|.+.+..+...+.++.++..++++.+
T Consensus       152 A~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  152 ATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            43322223456788999999988888887777766666666554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=93.72  E-value=0.32  Score=46.22  Aligned_cols=135  Identities=12%  Similarity=0.019  Sum_probs=73.1

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCccc
Q 021653           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF----WTITIASIIYQIGMICLTISAI-LPQLRPPPCEGEQV  125 (309)
Q Consensus        51 ~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~----~~i~i~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~  125 (309)
                      +-.|.+..+......++..+..+|.++||.++|++ -|.    .+..+.-+....|.......-. +|.           
T Consensus       276 ~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~-~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~-----------  343 (493)
T KOG1330|consen  276 ELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL-SRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA-----------  343 (493)
T ss_pred             HHhCCccccchhhhhHHHhhchhhheehHHHHHHH-HHhcccccchhHHHHHHhhhhhHHHHHHHHHHh-----------
Confidence            33456777777788889999999999999999993 221    2222222222222211110000 000           


Q ss_pred             cccccchhHHHHHHHHHHHHHh-hhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhccc
Q 021653          126 CQEANKGQVAILYVSLLLAALG-SGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM-GAAILVAVTVLVYIQDNI  203 (309)
Q Consensus       126 ~~~~~~~~~~~~~~~~~l~gig-~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~-~iG~~l~~~~~~~i~~~~  203 (309)
                          .......+...+++.|+- .-..++.......|..|++      +|...+++..... .+|..-+|.+.|.+++..
T Consensus       344 ----~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~------~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  344 ----FTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPS------RRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcc------cccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence                000111122222223322 2223455556667888887      7888888876544 445555666778887753


Q ss_pred             -cchh
Q 021653          204 -GWGW  207 (309)
Q Consensus       204 -gw~~  207 (309)
                       ||+.
T Consensus       414 ~g~~~  418 (493)
T KOG1330|consen  414 RGYKP  418 (493)
T ss_pred             hCCCc
Confidence             6663

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=93.69  E-value=1.4  Score=40.18  Aligned_cols=147  Identities=10%  Similarity=0.053  Sum_probs=79.3

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~   97 (309)
                      ++-.|..+.+-. .++..+..|.-..++......+++..  ..+++-    ......+++.+.+-.+ +|-|+++.++..
T Consensus        25 ~~~~knv~i~s~-~fl~~f~a~~gl~nlq~~vn~~lg~~--sl~~~y----~~l~~s~m~~~~~Ir~-~g~K~tm~lav~   96 (390)
T KOG3097|consen   25 LGILKNVLILSI-AFLLTFTAYLGLQNLQTSVNYDLGTV--SLGALY----LSLIDSSMFMPLLIRF-LGTKWTMVLAVF   96 (390)
T ss_pred             cchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhcCcccc--hhhhhh----HHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            334455554444 44444555555566766655444322  222221    1222233444466666 599999988776


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhh-------
Q 021653           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQ-------  170 (309)
Q Consensus        98 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~-------  170 (309)
                      .+..-    ...+..|                   .+..++-+-.+.|+|.+..++.-..|+++.-..+.++.       
T Consensus        97 ~Y~ly----iA~Nl~p-------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~  153 (390)
T KOG3097|consen   97 PYALY----IAANLEP-------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDG  153 (390)
T ss_pred             HHHHH----HHhhcch-------------------hHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCc
Confidence            55432    2222111                   44556666788899999999888888877665443211       


Q ss_pred             --hhhhhHHHHHHHHHHHHHHHHHHHH
Q 021653          171 --ATKTWKYFNWYYFVMGAAILVAVTV  195 (309)
Q Consensus       171 --~~~r~~~~~~~~~~~~iG~~l~~~~  195 (309)
                        .+.-+-++.+++...-.|..++..+
T Consensus       154 ~~~~ffg~Ffii~~~~qv~gn~issli  180 (390)
T KOG3097|consen  154 MKVRFFGEFFIIFQCAQVWGNLISSLI  180 (390)
T ss_pred             eeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence              1122445555555555565555544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.67  E-value=2.3  Score=38.00  Aligned_cols=140  Identities=10%  Similarity=0.057  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHH
Q 021653           61 ANTLTNFGGTGSLTPLIGAFVADAYAGR--FWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILY  138 (309)
Q Consensus        61 ~~~~~~~~~~~~~~~l~~G~laD~~~GR--~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (309)
                      +.+.+.+.....+|+-+...+..+- ..  ...+.+..++.+....+..+..+               .+|+..++..-+
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~---------------vsP~kes~~~s~  348 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSS---------------VSPSKESPSESL  348 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhc---------------cCCCcCCchHHH
Confidence            6677777777777776666655542 11  12344444333333322222221               112334555557


Q ss_pred             HHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Q 021653          139 VSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFL  218 (309)
Q Consensus       139 ~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~  218 (309)
                      ++..+.-...|..+|.+.-+=....|++      .|++.++|+-.-.++-.-++......-....+-|..|.++.+...+
T Consensus       349 i~F~~~E~cvGlfwPSimkmRsqyIPEe------arstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~  422 (454)
T KOG4332|consen  349 IGFCLFEACVGLFWPSIMKMRSQYIPEE------ARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFV  422 (454)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHhhCCHH------HHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHH
Confidence            7777888889999999988888888877      7999999987766655443322111111124567889888887776


Q ss_pred             HHHH
Q 021653          219 SIIA  222 (309)
Q Consensus       219 ~~~~  222 (309)
                      +.+.
T Consensus       423 a~i~  426 (454)
T KOG4332|consen  423 ASIL  426 (454)
T ss_pred             HHHH
Confidence            6544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=89.78  E-value=10  Score=35.73  Aligned_cols=63  Identities=11%  Similarity=0.010  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021653          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (309)
Q Consensus       133 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~  201 (309)
                      +.+..++..+..|+..|+.+.+....+.|..+++      +|....+....+-++|..++.+++-++++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~------~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPE------DREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4566666677889999999999998888877765      67777787777888888777766655543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=89.41  E-value=21  Score=34.46  Aligned_cols=71  Identities=10%  Similarity=0.076  Sum_probs=53.8

Q ss_pred             HHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Q 021653          143 LAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFL  218 (309)
Q Consensus       143 l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~  218 (309)
                      +.++........-...+.+++|...     +|+.+++-++...++.+++...+.+.+.+..||..+-.+..++.++
T Consensus       275 ~y~~~~nlve~~~k~~v~~~~p~~~-----~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       275 AYGISINLVEVTWKSKLKAQYPSPN-----EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3455556666777778888888654     7899999999888888877666668999999999777665555544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=87.92  E-value=2.2  Score=40.61  Aligned_cols=57  Identities=9%  Similarity=-0.022  Sum_probs=40.4

Q ss_pred             HHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 021653          142 LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG  204 (309)
Q Consensus       142 ~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~g  204 (309)
                      ++..+..+...-+...+.+|..|+.      .-|+.++......|+|..++..++..+.+..+
T Consensus       326 ~l~~~~~~i~~mP~lvl~a~lcP~G------~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  326 ILEEVIGMIAFMPSLVLAARLCPKG------SEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3444444445556667889999987      57888888888888888888877777665443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=81.23  E-value=20  Score=26.69  Aligned_cols=44  Identities=16%  Similarity=0.117  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 021653           60 AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (309)
Q Consensus        60 ~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~  104 (309)
                      .+........+..+++.+.|++.|.. |.+..+.+...+..++.+
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  132 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFI  132 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHH
Confidence            34455566788888889999999985 877777666555544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	309
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		4e-11

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 30/218 (13%)
Query: 24  MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK------AANTLTNFGGTGSLTPLI 77
           +P+I ++E CE+ +  G    +  +L T L + + +      A +   +F       PL+
Sbjct: 14  IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLL 73
Query: 78  GAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAIL 137
           G ++AD + G++ TI   S+IY +G   L I                  + + +G     
Sbjct: 74  GGWIADRFFGKYNTILWLSLIYCVGHAFLAI-----------------FEHSVQG----F 112
Query: 138 YVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV 197
           Y            I+P V +F  DQFD+++   A K    F+ +YF +      A   + 
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFASLSMP 169
Query: 198 YIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDP 235
            +  N G     GIP   MF++ + F +G   Y ++ P
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
2xut_A	524	Proton/peptide symporter family protein; transport	5e-74
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  235 bits (601), Expect = 5e-74
 Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 31/271 (11%)

Query: 24  MPFIFSNEVCEKLAVVGFNTNMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLI 77
           +P+I ++E CE+ +  G    +  +L T L       +    A +   +F       PL+
Sbjct: 14  IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLL 73

Query: 78  GAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAIL 137
           G ++AD + G++ TI   S+IY +G   L I                         V   
Sbjct: 74  GGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE---------------------HSVQGF 112

Query: 138 YVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV 197
           Y  L L ALGSGGI+P V +F  DQFD+++   A    K F+ +YF +      A   + 
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFASLSMP 169

Query: 198 YIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLT 257
            +  N G     GIP   MF++ + F +G   Y ++ P        L V  +A    K+ 
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT-KVE 228

Query: 258 MVTDPKLLYENEELDAAISLGGKLLHTKHMK 288
              +  L+       +A      +     + 
Sbjct: 229 GKGNIGLVLALIGGVSAAYALVNIPTLGIVA 259

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 44/238 (18%), Positives = 89/238 (37%), Gaps = 33/238 (13%)

Query: 27  IFSNEVCEKLAVVGFNTNMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFV 81
           +F  E+ E+ +  G    ++ Y+        LH+    AA+ +  +     L+  IG FV
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77

Query: 82  ADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL 141
           AD   G    +    ++  +G I L +                          + L+ S+
Sbjct: 78  ADRIIGARPAVFWGGVLIMLGHIVLALP----------------------FGASALFGSI 115

Query: 142 LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD 201
           +L  +G+G ++P V       +DE D ++       F+ + F +     +A  ++   Q+
Sbjct: 116 ILIIIGTGFLKPNVSTLVGTLYDEHDRRRDA----GFSIFVFGINLGAFIAPLIVGAAQE 171

Query: 202 NIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMV 259
             G+     +    MF+ ++ +  G    + LDP     T  L          K+++ 
Sbjct: 172 AAGYHVAFSLAAIGMFIGLLVYYFGGK--KTLDPHYLRPTDPLAPEEVKPLLVKVSLA 227

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 31/262 (11%), Positives = 62/262 (23%), Gaps = 77/262 (29%)

Query: 68  GGTG--SLTPLIGAFVADAYA-------GRFWTITIA------SIIYQIGMICLTISAIL 112
            G+G   +       V  +Y          FW + +       +++  +  +   I    
Sbjct: 159 LGSGKTWVA----LDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 113 PQLRPPPCEGEQVCQEANKGQVAIL----YVSLLLAALGSGGIRPCVVAFGADQFDETDP 168
                     +            +L    Y + LL           V+       +  + 
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----------VL----L--NVQNA 256

Query: 169 KQATKTWKYFNWYYFVMGAAILV------------AVTVLVYIQDNIGWGW----GLGIP 212
           K     W  FN     +   IL+            A T      D+            + 
Sbjct: 257 K----AWNAFN-----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL- 306

Query: 213 TFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELD 272
               +L      +            +P    L +   + R    T   D       ++L 
Sbjct: 307 -LLKYLDCRPQDL-----PREVLTTNPR--RLSIIAESIRDGLAT--WDNWKHVNCDKLT 356

Query: 273 AAISLGGKLLHTKHMKDIYHRF 294
             I     +L     + ++ R 
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRL 378

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.85
2xut_A	524	Proton/peptide symporter family protein; transport	99.82
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.81
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.76
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.69
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.68
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.56
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.51
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.42
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.27
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.25
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.25
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.99
2xut_A	524	Proton/peptide symporter family protein; transport	98.28

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.85  E-value=3.2e-20  Score=176.05  Aligned_cols=186  Identities=21%  Similarity=0.385  Sum_probs=164.2

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh-----cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHh-ccchHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFVADA-YAGRFWT   91 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~-~~GR~~~   91 (309)
                      +++++..+.+.+..++.++.+|++..+++.|++++     +|++..+.+.+.+.+.++..++++++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            44567788888899999999999999999999988     99999999999999999999999999999999 6 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhh
Q 021653           92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (309)
Q Consensus        92 i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~  171 (309)
                      +.++.++..++.+++.++.                      +.+.++++|++.|+|.|...+...++++|.+|++++   
T Consensus        88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~---  142 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR---  142 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT---
T ss_pred             HHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc---
Confidence            9999999999988887655                      667889999999999999999999999999998732   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcce
Q 021653          172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLY  230 (309)
Q Consensus       172 ~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  230 (309)
                       .|+..+++++.+.++|..++|.+.+++.+..||++.|++.++..+++.++++...+++
T Consensus       143 -~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  200 (491)
T 4aps_A          143 -RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT  200 (491)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence             4888999999999999999999999999999999999998887777666655544433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.82  E-value=4.2e-19  Score=169.83  Aligned_cols=192  Identities=31%  Similarity=0.559  Sum_probs=159.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcC------CCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITI   94 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i   94 (309)
                      ++..+.+.+..++.++.+|++..+++.|+++++|      ++..+.+.+.+.+.++..++.+++|+++||++|||+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~   90 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW   90 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            4556667788889999999999999999999999      9999999999999999999999999999994499999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhh
Q 021653           95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  174 (309)
Q Consensus        95 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r  174 (309)
                      +.++..++.+++.++.                     .+.+.++++|++.|+|.|...++..++++|.+|+++   ++++
T Consensus        91 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~  146 (524)
T 2xut_A           91 LSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLA  146 (524)
T ss_dssp             HHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHH
T ss_pred             HHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHH
Confidence            9999998888777643                     156778899999999999999999999999999873   1123


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCcceeccCCC
Q 021653          175 WKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPA  236 (309)
Q Consensus       175 ~~~~~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
                      ...+++++.+.++|..+++.+.+++.+..||++.|++.+++.+++.++++...+++..++|+
T Consensus       147 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (524)
T 2xut_A          147 QKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPE  208 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence            55667799999999999999999999889999999998888777666665555544433333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.81  E-value=4.2e-18  Score=158.68  Aligned_cols=177  Identities=12%  Similarity=0.067  Sum_probs=146.4

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHH
Q 021653           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (309)
Q Consensus        18 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~   97 (309)
                      +..++.+..+....++..+....... +.+++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            44455555555556556655554444 44557789999999999999999999999999999999996 99999999999


Q ss_pred             HHHHHHHHH---HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhh
Q 021653           98 IYQIGMICL---TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  174 (309)
Q Consensus        98 l~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r  174 (309)
                      +..++.+++   ..+.                      +.+.++++|++.|+|.|...+...++++|.+|++      +|
T Consensus       100 ~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r  151 (438)
T 3o7q_A          100 LYALGAALFWPAAEIM----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SG  151 (438)
T ss_dssp             HHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------TH
T ss_pred             HHHHHHHHHHhccccc----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hH
Confidence            999999888   4434                      7889999999999999999999999999999987      79


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhh-cccc-------------------------chhhhhHHHHHHHHHHHHHH
Q 021653          175 WKYFNWYYFVMGAAILVAVTVLVYIQ-DNIG-------------------------WGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       175 ~~~~~~~~~~~~iG~~l~~~~~~~i~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~  224 (309)
                      +...++++.+.++|..+++.+.+++. +..+                         |++.|++.+++.++..++++
T Consensus       152 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887 5554                         89999877766555444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.76  E-value=8.7e-18  Score=157.00  Aligned_cols=175  Identities=14%  Similarity=0.095  Sum_probs=146.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      |+..+.+.+..++..+..+.+...++ ++.+++ .+..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            44555555555555555554555554 445677 9999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHH----HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhH
Q 021653          101 IGMICLTI----SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (309)
Q Consensus       101 ~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  176 (309)
                      ++.+++.+    +.                      +.+.++++|++.|+|.|...+...++++|.+|++      +|++
T Consensus       104 ~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~  155 (451)
T 1pw4_A          104 AVMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGG  155 (451)
T ss_dssp             HHHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHH
T ss_pred             HHHHHHHhhhhccc----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhH
Confidence            99999888    55                      6677899999999999999999999999999987      7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHHHHHh
Q 021653          177 YFNWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       177 ~~~~~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      ..++++.+.++|..+++.+++++.+..| |++.|++.+++.++..++.+..
T Consensus       156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~  206 (451)
T 1pw4_A          156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM  206 (451)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999888888 9999999888776655444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.69  E-value=1.1e-16  Score=146.46  Aligned_cols=165  Identities=10%  Similarity=0.083  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 021653           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (309)
Q Consensus        27 i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~  106 (309)
                      +....++..+........++. +.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHH
Confidence            344455555555545555554 4678999999999999999999999999999999996 99999999999999999998


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHH
Q 021653          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (309)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~  186 (309)
                      ..+.                      +.+.++++|++.|++.+...+....++.|.+|++      +|++..++++...+
T Consensus        83 ~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  134 (375)
T 2gfp_A           83 VTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGIL  134 (375)
T ss_dssp             HHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHH
T ss_pred             HHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHH
Confidence            8877                      7888999999999999999999999999999977      69999999999999


Q ss_pred             HHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHH
Q 021653          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (309)
Q Consensus       187 iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~  221 (309)
                      +|..+++.+.+++.+..+|++.|++.++..++..+
T Consensus       135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            99999999999999888999999888776655544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.68  E-value=1.9e-16  Score=149.95  Aligned_cols=172  Identities=12%  Similarity=0.111  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHH
Q 021653           57 LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAI  136 (309)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (309)
                      ....+++++.+.++..++++++|+++||+ |||++++++.+++.++.++++++...........    .-...-..+..+
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~----~~~~~~a~~~~~  128 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN----TVPVYLAGYVPE  128 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS----SCCGGGGGCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh----HHHHHHhhhHHH
Confidence            34567888899999999999999999996 9999999999999999998885431000000000    000001127889


Q ss_pred             HHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--------ccchhh
Q 021653          137 LYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN--------IGWGWG  208 (309)
Q Consensus       137 ~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~--------~gw~~~  208 (309)
                      ++++|++.|+|.|+..+..+.+++|..|++      +|+...++++.+..+|.++++.+...+...        .+|+..
T Consensus       129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4gc0_A          129 FVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYM  202 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHH
Confidence            999999999999999999999999999987      799999999999999999988776655432        346666


Q ss_pred             hhHHHHHHHHHHHH--HHHhCcceeccCCCCCh
Q 021653          209 LGIPTFAMFLSIIA--FLIGYPLYRNLDPAGSP  239 (309)
Q Consensus       209 f~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  239 (309)
                      +.+..+..++.++.  +.+++|++...+.+.++
T Consensus       203 ~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~  235 (491)
T 4gc0_A          203 FASECIPALLFLMLLYTVPESPRWLMSRGKQEQ  235 (491)
T ss_dssp             HHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHH
T ss_pred             hhhhhhhhhhhhhhhhcCCCChHHHHHcCchhH
Confidence            65555544433322  33456666655444333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.56  E-value=1.4e-13  Score=128.32  Aligned_cols=177  Identities=14%  Similarity=0.136  Sum_probs=146.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc--chHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA--GRFWTITIASIIY   99 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~--GR~~~i~i~~~l~   99 (309)
                      +..+.+.+..++..+..+++..+++.|+++.+|++..+++.+.+...++..++.++.|+++|| +  |||+.+.++..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence            456667777778888888889999999998899999999999999999999999999999999 6  8999888777665


Q ss_pred             H-HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653          100 Q-IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus       100 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      . ++.+++....                    ..+.+.+.+..++.|++.++..+....+..|.+|++      .|++..
T Consensus       331 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~  384 (451)
T 1pw4_A          331 VTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAA  384 (451)
T ss_dssp             HHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHH
T ss_pred             HHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh------hhhhHH
Confidence            5 4444333221                    114566677778889988888888889999999987      799999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          179 NWYYFVMGA-AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       179 ~~~~~~~~i-G~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      ++++...++ |..+++.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus       385 ~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999 99999999999999999999999888877776655443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.51  E-value=1e-12  Score=122.08  Aligned_cols=167  Identities=13%  Similarity=0.081  Sum_probs=133.0

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHH-hHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISY-LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      +..+..++..++.....+.+..+++.| +++.+|++..+++.+.+...++..++.+++|+++||+ |||+.+.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            455666666667777777888899999 8888899999999999999999999999999999996 99999999998888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      ++.++.....                      +... .+..++.|++.+...+....+..|.+|++       ++...++
T Consensus       337 ~~~~~~~~~~----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  386 (438)
T 3o7q_A          337 ALCLISAFAG----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF  386 (438)
T ss_dssp             HHHHHHHHCC----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHH
T ss_pred             HHHHHHHHcC----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhH
Confidence            8777666543                      3333 33447788999999999999989998853       4444554


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHH
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSI  220 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~g-w~~~f~i~~~~~~~~~  220 (309)
                      .. ...+|+.++|.+.+++.+..| ++..|.+.+++.++..
T Consensus       387 ~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          387 IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            44 567999999999999999888 9999988766554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.42  E-value=1.7e-12  Score=120.87  Aligned_cols=165  Identities=8%  Similarity=0.052  Sum_probs=119.7

Q ss_pred             HHHHHHHHhhHHHHHHHhHHhcCCC---HHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 021653           32 VCEKLAVVGFNTNMISYLTTQLHMP---LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (309)
Q Consensus        32 ~~~~~~~~~~~~~l~~yl~~~~~~s---~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~  108 (309)
                      ++....++....+++.|+.+.++..   ....+...+...++..++.+++|+++||+ |||+++.++.++..++.+++.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~  308 (417)
T 2cfq_A          230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF  308 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445566888887666532   23445556666667778889999999996 9999998888777666554433


Q ss_pred             HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH-HHHHHHH
Q 021653          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-YYFVMGA  187 (309)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-~~~~~~i  187 (309)
                      ..                      +...+.+...+.+++.+...+....+.+|.+|++      .|++..++ ++....+
T Consensus       309 ~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~l  360 (417)
T 2cfq_A          309 AT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQL  360 (417)
T ss_dssp             CC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHH
T ss_pred             hc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhH
Confidence            22                      4455556666677777766677788999999976      78888888 4777889


Q ss_pred             HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHH
Q 021653          188 AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (309)
Q Consensus       188 G~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~  225 (309)
                      |+.++|.+.+++.+..|+...|.+.+++.+++.++.+.
T Consensus       361 g~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988888888888877777666655433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.27  E-value=2e-11  Score=115.39  Aligned_cols=184  Identities=9%  Similarity=-0.029  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHH-----HHHHH
Q 021653           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT-----IASII   98 (309)
Q Consensus        24 ~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~-----i~~~l   98 (309)
                      .+.+....++....+......++.|+++.++.+....+.+.+...++..++.++.|+++||+ |||+...     ++.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            44444445555566666777888999888888866677777778888888899999999996 9986544     66666


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHH
Q 021653           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (309)
Q Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  178 (309)
                      ..++.+++........             .+.+.+...+.+..++.|+|.+...+....+..|.+|++      .|+...
T Consensus       364 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~  424 (491)
T 4aps_A          364 AGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA------FNSQMM  424 (491)
T ss_dssp             HHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT------CSSSST
T ss_pred             HHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHHH
Confidence            6666665554331100             001124556667778889999999999999999999988      689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHhCc
Q 021653          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       179 ~~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                      +.++...++|..+++.+.+++.+. ++...|.+.+++.+++.++.+...+
T Consensus       425 g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          425 SMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888764 5666777777766666655554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.25  E-value=4.1e-13  Score=125.05  Aligned_cols=168  Identities=5%  Similarity=-0.081  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 021653           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (309)
Q Consensus        23 ~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g  102 (309)
                      ..+.+....++..+.+..+..+++.|+++++|++..+.+.+.+.+.++..++++++|+++||+ |||++++++..+..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~   86 (417)
T 2cfq_A            8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence            344444555555555566677899999989999999999999999999999999999999996 9999999888776543


Q ss_pred             HHHH---HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHH
Q 021653          103 MICL---TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (309)
Q Consensus       103 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  179 (309)
                      ....   .....                     ....+..++.+.+++.|...+...+...+..++.    .++++..++
T Consensus        87 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g  141 (417)
T 2cfq_A           87 FAPFFIFIFGPL---------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFG  141 (417)
T ss_dssp             HHHHHHHTHHHH---------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHH
T ss_pred             HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchH
Confidence            2211   11110                     0001223344444444433333333333332211    114555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 021653          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMF  217 (309)
Q Consensus       180 ~~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~  217 (309)
                      ..+...++|..++|.+.+++.+ .+|+..|++.++..+
T Consensus       142 ~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~  178 (417)
T 2cfq_A          142 RARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL  178 (417)
T ss_dssp             HHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence            6666778899999999888876 589998887665543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.25  E-value=2.9e-10  Score=107.20  Aligned_cols=185  Identities=14%  Similarity=0.049  Sum_probs=121.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      +..........+..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI  354 (491)
T ss_dssp             THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence            3344444444444444333344444556667888888777777777888889999999999996 999999999888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +.+.+.......                .........+..+..+++.+ ..+....+.+|.+|++      .|++..++.
T Consensus       355 ~~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~------~R~~~~g~~  411 (491)
T 4gc0_A          355 GMFSLGTAFYTQ----------------APGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNA------IRGKALAIA  411 (491)
T ss_dssp             HHHHHHHHHHTT----------------CCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTT------THHHHHHHH
T ss_pred             HHHHHHHHHhcc----------------cchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHh------HHHHHHHHH
Confidence            777666543111                01111122222222233322 3356678899999998      699999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhc------cccchhhhhHHHHHHHHHHHHHHHhCcce
Q 021653          182 YFVMGAAILVAVTVLVYIQD------NIGWGWGLGIPTFAMFLSIIAFLIGYPLY  230 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  230 (309)
                      +....+|+.+++.+.+.+.+      ..++...|++.+++.+++.+..++..|+.
T Consensus       412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            88888999888877666543      34556677777777777776666655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.99  E-value=3e-10  Score=103.40  Aligned_cols=164  Identities=9%  Similarity=-0.030  Sum_probs=122.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHH-HH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII-YQ  100 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l-~~  100 (309)
                      |..+...+..++..+..+.+..+++.|+++.+|++..+++.+.+...++..++.++.|+++||+ ||+  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            3455556666677777777888888899888999999999999999999999999999999996 872  2333332 22


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      .+..+......                  ...+.+.+++..++.|++.+...+....+..|.+| +      +|++..+.
T Consensus       276 ~~~~~~~~~~~------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~------~~g~~~g~  330 (375)
T 2gfp_A          276 AGLLMWIPDWF------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F------LAGTAGAL  330 (375)
T ss_dssp             TSSSSSHHHHH------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H------HHHHHHHH
T ss_pred             HHHHHHHHhhh------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c------ccchHHHH
Confidence            22221111110                  01145566677788899999999999999999987 4      69999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhhhhHHH
Q 021653          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPT  213 (309)
Q Consensus       181 ~~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~  213 (309)
                      ++...++|..+++.+.+.+.+..+|...+.+..
T Consensus       331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999998887777777666543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.28  E-value=2e-07  Score=88.50  Aligned_cols=90  Identities=10%  Similarity=0.056  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--cc-----
Q 021653          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI--GW-----  205 (309)
Q Consensus       133 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~~~--gw-----  205 (309)
                      +.+.+.++.++.|+|.+...+....+..|.+|++      .|++..++++...++|+.+++.+.+.+.+..  +|     
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~  477 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA------MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG  477 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT------CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            4455667778899999999999999999999987      6999999999999999999999999887632  23     


Q ss_pred             ----hhhhhHHHHHHHHHHHHHHHhCc
Q 021653          206 ----GWGLGIPTFAMFLSIIAFLIGYP  228 (309)
Q Consensus       206 ----~~~f~i~~~~~~~~~~~~~~~~~  228 (309)
                          +..|++.+++.+++.++++...+
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          478 MSVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                22355555555555544443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.73
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.49
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.45
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.41

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.1e-17  Score=151.25  Aligned_cols=158  Identities=12%  Similarity=0.086  Sum_probs=132.9

Q ss_pred             HHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021653           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (309)
Q Consensus        43 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~  122 (309)
                      ..+.++++ ++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++..+....         
T Consensus        45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~---------  113 (447)
T d1pw4a_          45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT---------  113 (447)
T ss_dssp             HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred             HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh---------
Confidence            34456765 6899999999999999999999999999999996 999999999999999988887654211         


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 021653          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD-  201 (309)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~iG~~l~~~~~~~i~~-  201 (309)
                               .+...+++.|++.|++.|...+....+++|.+|++      +|++..++++.+.++|..+++.+.+.+.. 
T Consensus       114 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_         114 ---------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             ---------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             ---------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhh
Confidence                     15567899999999999999999999999999987      79999999999999999999988777655 


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHh
Q 021653          202 NIGWGWGLGIPTFAMFLSIIAFLIG  226 (309)
Q Consensus       202 ~~gw~~~f~i~~~~~~~~~~~~~~~  226 (309)
                      ..+|++.|++.+++.++..++.+..
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~  203 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAM  203 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccchhhhhhHHHHHHHHHHh
Confidence            4579999988877766655544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.6e-13  Score=122.35  Aligned_cols=179  Identities=6%  Similarity=-0.090  Sum_probs=115.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 021653           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (309)
Q Consensus        22 ~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~  101 (309)
                      |..|.+.+..++..+........++.|+++++|+|..+.+.+.+++.++..+++++.|+++||+ |||++++++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            3556666667777777666777889999999999999999999999999999999999999997 999999999988888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH
Q 021653          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (309)
Q Consensus       102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  181 (309)
                      +.++.......+                  ......++.+.+.+.+.+...........+..+++    .+++....+..
T Consensus        86 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  143 (417)
T d1pv7a_          86 MFAPFFIFIFGP------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRA  143 (417)
T ss_dssp             THHHHHHHTHHH------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHHH
T ss_pred             HHHHHHHhhhhh------------------hHHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHHH
Confidence            877777655100                  01111233333333333333333322222222211    11344445555


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHH
Q 021653          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (309)
Q Consensus       182 ~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~~  224 (309)
                      ......|..+++.+.+.+.+. +|+..+........+..++..
T Consensus       144 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~  185 (417)
T d1pv7a_         144 RMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLF  185 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccccccccccccccc-cccccccchhhHHHHHHHHHH
Confidence            666777888888888877664 444444444444433333333

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.6e-12  Score=118.17  Aligned_cols=179  Identities=13%  Similarity=0.080  Sum_probs=136.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHH
Q 021653           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (309)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~  100 (309)
                      .+..+.+....++.....++...+++.|+.+.++++..+.+.......+...++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            35566666777777888888889999999999999999999999999999999999999999996 87654444333332


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHH
Q 021653          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (309)
Q Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  180 (309)
                      +..+........                 ...+.....+..++.|++.++..+....+..|.+|++      .|++..++
T Consensus       327 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~  383 (447)
T d1pw4a_         327 LVTIATIVYWMN-----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGF  383 (447)
T ss_dssp             HHHHHHHHTTSC-----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHHH
T ss_pred             HHHHHHHHHHhc-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHH
Confidence            222222221100                 1125566667777888888888888999999999987      79999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Q 021653          181 YYFVMGA-AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (309)
Q Consensus       181 ~~~~~~i-G~~l~~~~~~~i~~~~gw~~~f~i~~~~~~~~~~~~  223 (309)
                      .+...++ |..++|.+.+++.+..||+..|++.+++.+++.++.
T Consensus       384 ~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         384 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            8887777 456788999999999999998888777666555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.5e-13  Score=119.99  Aligned_cols=144  Identities=8%  Similarity=0.014  Sum_probs=119.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhH
Q 021653           55 MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV  134 (309)
Q Consensus        55 ~s~~~~~~~~~~~~~~~~~~~l~~G~laD~~~GR~~~i~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (309)
                      .+....+.......++..++..+.+++.||+ ||++.+.++.++..++.+++....                      +.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~  312 (417)
T d1pv7a_         256 QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT----------------------SA  312 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC----------------------CH
T ss_pred             cchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc----------------------cc
Confidence            4445566667777888889999999999996 999999999988888877777554                      67


Q ss_pred             HHHHHHHHHHHHhhhcchhhhhhhhhcccCCCChhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhccccchhhhhHHH
Q 021653          135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY-YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPT  213 (309)
Q Consensus       135 ~~~~~~~~l~gig~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~-~~~~~iG~~l~~~~~~~i~~~~gw~~~f~i~~  213 (309)
                      +.+++..++.|++.+...+....+..|.+|++      .|++..+.. .....+|..+++.+.+++.+..|++..|++.+
T Consensus       313 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~  386 (417)
T d1pv7a_         313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            77888888999999999999999999999987      699998875 45677999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHhC
Q 021653          214 FAMFLSIIAFLIGY  227 (309)
Q Consensus       214 ~~~~~~~~~~~~~~  227 (309)
                      ++.++..++..+..
T Consensus       387 ~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         387 LVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhh
Confidence            77776665554443