Citrus Sinensis ID: 021688

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEPDKKEK
cHHHHHHHccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccEEEEccccccccccEEEEcccccEEEEEEEcHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHcccccccHHHHHHHcccHHHHcc
ccHHHHccccccHEEEEEEEHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEEEEcccccccccEEEcccccccEEEEEHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHccc
mlwsqltdlpfslYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLiaplfnkftplpegeLREKIEKLASSlkfplkklfvvdgstrsshsnaymygffknkRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTdlfrsfgfdtqpvLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENlsamntdpwysayhyshpplverlaaidepdkkek
MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLaaidepdkkek
MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEPDKKEK
**WSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERL***********
MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAI*E******
MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEPDKKEK
MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEPD****
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEPDKKEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query309 2.2.26 [Sep-21-2011]
Q8RX88424 CAAX prenyl protease 1 ho yes no 0.993 0.724 0.892 1e-163
Q6EPN8425 CAAX prenyl protease 1 ho yes no 1.0 0.727 0.838 1e-151
O75844475 CAAX prenyl protease 1 ho yes no 0.967 0.629 0.486 2e-83
Q80W54475 CAAX prenyl protease 1 ho yes no 0.967 0.629 0.483 6e-83
P47154453 CAAX prenyl protease 1 OS yes no 0.967 0.660 0.458 2e-74
Q10071474 Probable CAAX prenyl prot yes no 0.961 0.626 0.449 6e-70
Q54FH7426 CAAX prenyl protease 1 ho yes no 0.957 0.694 0.437 2e-64
P40769426 Uncharacterized metallopr yes no 0.844 0.612 0.274 2e-17
A4G729293 Protease HtpX homolog OS= no no 0.598 0.631 0.296 2e-09
A6SXH1290 Protease HtpX homolog OS= no no 0.598 0.637 0.300 2e-09
>sp|Q8RX88|FACE1_ARATH CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1 PE=1 SV=1 Back     alignment and function desciption
 Score =  575 bits (1481), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/307 (89%), Positives = 290/307 (94%)

Query: 1   MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 60
           M WSQ+TDLPFSLYSTFVIE+RHGFNKQTIW+F RDMIKG  L+++LGPPIV+AII IVQ
Sbjct: 116 MTWSQITDLPFSLYSTFVIESRHGFNKQTIWMFIRDMIKGTFLSVILGPPIVAAIIFIVQ 175

Query: 61  KGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLK 120
           KGGPYLAIYLWAFMF+LSLVMMT+YPVLIAPLFNKFTPLP+G+LREKIEKLASSLKFPLK
Sbjct: 176 KGGPYLAIYLWAFMFILSLVMMTIYPVLIAPLFNKFTPLPDGDLREKIEKLASSLKFPLK 235

Query: 121 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 180
           KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKN++EIVAVIAHELGHWKLNHT 
Sbjct: 236 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNEDEIVAVIAHELGHWKLNHTT 295

Query: 181 YSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLN 240
           YSFIAVQ+L  LQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIP+QHLVSFGLN
Sbjct: 296 YSFIAVQILAFLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPLQHLVSFGLN 355

Query: 241 LVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAA 300
           LVSR+FEFQADAFA KLGYA  LR  LVKLQEENLSAMNTDP YSAYHYSHPPLVERL A
Sbjct: 356 LVSRAFEFQADAFAVKLGYAKDLRPALVKLQEENLSAMNTDPLYSAYHYSHPPLVERLRA 415

Query: 301 IDEPDKK 307
           ID  DKK
Sbjct: 416 IDGEDKK 422
Proteolytically removes the C-terminal three residues of farnesylated proteins. The substrate specificity is only partially overlaping with that of FACE2.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 8EC: 4
>sp|Q6EPN8|FACE1_ORYSJ CAAX prenyl protease 1 homolog OS=Oryza sativa subsp. japonica GN=FACE1 PE=2 SV=1 Back     alignment and function description
>sp|O75844|FACE1_HUMAN CAAX prenyl protease 1 homolog OS=Homo sapiens GN=ZMPSTE24 PE=1 SV=2 Back     alignment and function description
>sp|Q80W54|FACE1_MOUSE CAAX prenyl protease 1 homolog OS=Mus musculus GN=Zmpste24 PE=1 SV=2 Back     alignment and function description
>sp|P47154|STE24_YEAST CAAX prenyl protease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE24 PE=1 SV=1 Back     alignment and function description
>sp|Q10071|STE24_SCHPO Probable CAAX prenyl protease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H1.05 PE=3 SV=1 Back     alignment and function description
>sp|Q54FH7|FACE1_DICDI CAAX prenyl protease 1 homolog OS=Dictyostelium discoideum GN=zmpste24 PE=3 SV=1 Back     alignment and function description
>sp|P40769|YHFN_BACSU Uncharacterized metalloprotease YhfN OS=Bacillus subtilis (strain 168) GN=yhfN PE=3 SV=2 Back     alignment and function description
>sp|A4G729|HTPX_HERAR Protease HtpX homolog OS=Herminiimonas arsenicoxydans GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|A6SXH1|HTPX_JANMA Protease HtpX homolog OS=Janthinobacterium sp. (strain Marseille) GN=htpX PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
255541686 424 caax prenyl protease ste24, putative [Ri 0.996 0.726 0.941 1e-172
224130374 424 predicted protein [Populus trichocarpa] 0.993 0.724 0.947 1e-171
224067924 424 predicted protein [Populus trichocarpa] 0.993 0.724 0.941 1e-170
225454328 424 PREDICTED: CAAX prenyl protease 1 homolo 0.996 0.726 0.915 1e-168
449432124 424 PREDICTED: CAAX prenyl protease 1 homolo 1.0 0.728 0.912 1e-168
449480231 424 PREDICTED: CAAX prenyl protease 1 homolo 1.0 0.728 0.909 1e-167
356568433 424 PREDICTED: CAAX prenyl protease 1 homolo 0.996 0.726 0.899 1e-166
357507535 426 CAAX prenyl protease-like protein [Medic 1.0 0.725 0.889 1e-165
356531957 424 PREDICTED: CAAX prenyl protease 1 homolo 0.996 0.726 0.886 1e-164
18411603 424 CAAX prenyl protease 1-like protein [Ara 0.993 0.724 0.892 1e-161
>gi|255541686|ref|XP_002511907.1| caax prenyl protease ste24, putative [Ricinus communis] gi|223549087|gb|EEF50576.1| caax prenyl protease ste24, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 290/308 (94%), Positives = 304/308 (98%)

Query: 1   MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 60
           M+WSQ+TDLPFSLYSTFVIEARHGFNKQTIWLFFRD+IKG+ LAI+LGPPIVSAII+IVQ
Sbjct: 116 MIWSQITDLPFSLYSTFVIEARHGFNKQTIWLFFRDLIKGICLAIILGPPIVSAIILIVQ 175

Query: 61  KGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLK 120
           KGGPYLAIYLWAFMFVLSLVMMT+YP+LIAPLFNKFTPLPEGELR KIE L+SSLKFPLK
Sbjct: 176 KGGPYLAIYLWAFMFVLSLVMMTIYPILIAPLFNKFTPLPEGELRSKIEALSSSLKFPLK 235

Query: 121 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 180
           KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM
Sbjct: 236 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 295

Query: 181 YSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLN 240
           YSF+AVQ+LT LQFGGYTLVRNSTDLF+SFGFDTQPVLIGLIIFQHTVIP+QHLVSFGLN
Sbjct: 296 YSFVAVQILTFLQFGGYTLVRNSTDLFQSFGFDTQPVLIGLIIFQHTVIPLQHLVSFGLN 355

Query: 241 LVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAA 300
           LVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAA
Sbjct: 356 LVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAA 415

Query: 301 IDEPDKKE 308
           +DEPDKKE
Sbjct: 416 LDEPDKKE 423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224130374|ref|XP_002320821.1| predicted protein [Populus trichocarpa] gi|222861594|gb|EEE99136.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224067924|ref|XP_002302601.1| predicted protein [Populus trichocarpa] gi|222844327|gb|EEE81874.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225454328|ref|XP_002277525.1| PREDICTED: CAAX prenyl protease 1 homolog [Vitis vinifera] gi|297745342|emb|CBI40422.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432124|ref|XP_004133850.1| PREDICTED: CAAX prenyl protease 1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449480231|ref|XP_004155836.1| PREDICTED: CAAX prenyl protease 1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356568433|ref|XP_003552415.1| PREDICTED: CAAX prenyl protease 1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|357507535|ref|XP_003624056.1| CAAX prenyl protease-like protein [Medicago truncatula] gi|355499071|gb|AES80274.1| CAAX prenyl protease-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356531957|ref|XP_003534542.1| PREDICTED: CAAX prenyl protease 1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|18411603|ref|NP_567212.1| CAAX prenyl protease 1-like protein [Arabidopsis thaliana] gi|75303258|sp|Q8RX88.1|FACE1_ARATH RecName: Full=CAAX prenyl protease 1 homolog; AltName: Full=Farnesylated proteins-converting enzyme 1; Short=AtFACE-1; Short=FACE-1; AltName: Full=Prenyl protein-specific endoprotease 1; AltName: Full=Zinc metalloproteinase Ste24 homolog; Short=AtSTE24 gi|19699057|gb|AAL90896.1| AT4g01320/F2N1_21 [Arabidopsis thaliana] gi|30102490|gb|AAP21163.1| At4g01320/F2N1_21 [Arabidopsis thaliana] gi|332656608|gb|AEE82008.1| CAAX prenyl protease 1-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
TAIR|locus:2124983424 ATSTE24 [Arabidopsis thaliana 0.993 0.724 0.892 4.3e-148
UNIPROTKB|F1NDA2468 ZMPSTE24 "Uncharacterized prot 0.498 0.329 0.584 2.8e-82
UNIPROTKB|O75844475 ZMPSTE24 "CAAX prenyl protease 0.501 0.326 0.574 2.8e-82
RGD|1305570475 Zmpste24 "zinc metallopeptidas 0.501 0.326 0.574 7.4e-82
UNIPROTKB|E1BMF2475 ZMPSTE24 "Uncharacterized prot 0.501 0.326 0.567 9.4e-82
UNIPROTKB|F1PY82473 ZMPSTE24 "Uncharacterized prot 0.501 0.327 0.567 9.4e-82
MGI|MGI:1890508475 Zmpste24 "zinc metallopeptidas 0.501 0.326 0.567 1.5e-81
ZFIN|ZDB-GENE-030131-6312468 zmpste24 "zinc metallopeptidas 0.498 0.329 0.564 2.2e-80
ASPGD|ASPL0000071441456 AN11231 [Emericella nidulans ( 0.987 0.668 0.482 4e-74
WB|WBGene00001405442 fce-1 [Caenorhabditis elegans 0.504 0.352 0.570 6.7e-73
TAIR|locus:2124983 ATSTE24 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
 Identities = 274/307 (89%), Positives = 290/307 (94%)

Query:     1 MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 60
             M WSQ+TDLPFSLYSTFVIE+RHGFNKQTIW+F RDMIKG  L+++LGPPIV+AII IVQ
Sbjct:   116 MTWSQITDLPFSLYSTFVIESRHGFNKQTIWMFIRDMIKGTFLSVILGPPIVAAIIFIVQ 175

Query:    61 KGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLK 120
             KGGPYLAIYLWAFMF+LSLVMMT+YPVLIAPLFNKFTPLP+G+LREKIEKLASSLKFPLK
Sbjct:   176 KGGPYLAIYLWAFMFILSLVMMTIYPVLIAPLFNKFTPLPDGDLREKIEKLASSLKFPLK 235

Query:   121 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTM 180
             KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKN++EIVAVIAHELGHWKLNHT 
Sbjct:   236 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNEDEIVAVIAHELGHWKLNHTT 295

Query:   181 YSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLN 240
             YSFIAVQ+L  LQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIP+QHLVSFGLN
Sbjct:   296 YSFIAVQILAFLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPLQHLVSFGLN 355

Query:   241 LVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAA 300
             LVSR+FEFQADAFA KLGYA  LR  LVKLQEENLSAMNTDP YSAYHYSHPPLVERL A
Sbjct:   356 LVSRAFEFQADAFAVKLGYAKDLRPALVKLQEENLSAMNTDPLYSAYHYSHPPLVERLRA 415

Query:   301 IDEPDKK 307
             ID  DKK
Sbjct:   416 IDGEDKK 422
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0006508 "proteolysis" evidence=IEA;IDA
GO:0004175 "endopeptidase activity" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0080120 "CAAX-box protein maturation" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0051604 "protein maturation" evidence=RCA
UNIPROTKB|F1NDA2 ZMPSTE24 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O75844 ZMPSTE24 "CAAX prenyl protease 1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305570 Zmpste24 "zinc metallopeptidase STE24" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BMF2 ZMPSTE24 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PY82 ZMPSTE24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1890508 Zmpste24 "zinc metallopeptidase, STE24" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6312 zmpste24 "zinc metallopeptidase, STE24 homolog" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000071441 AN11231 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00001405 fce-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RX88FACE1_ARATH3, ., 4, ., 2, 4, ., 8, 40.89250.99350.7240yesno
Q6EPN8FACE1_ORYSJ3, ., 4, ., 2, 4, ., 8, 40.83811.00.7270yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.840.991
3rd Layer3.4.240.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0035021702
hypothetical protein (424 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
pfam01435223 pfam01435, Peptidase_M48, Peptidase family M48 4e-60
COG0501302 COG0501, HtpX, Zn-dependent protease with chaperon 5e-26
PRK03982288 PRK03982, PRK03982, heat shock protein HtpX; Provi 2e-06
PRK02391296 PRK02391, PRK02391, heat shock protein HtpX; Provi 2e-05
PRK05457284 PRK05457, PRK05457, heat shock protein HtpX; Provi 0.001
PTZ00029216 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr 0.002
>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48 Back     alignment and domain information 
 Score =  191 bits (486), Expect = 4e-60
 Identities = 77/242 (31%), Positives = 109/242 (45%), Gaps = 32/242 (13%)

Query: 72  AFMFVLSLVMMTLYPVLIAPLFNKF-TPLPEGELREKIEKLASS--LKFPLKKLFVVDGS 128
           A + + SLV+ T+    IA L N F TPL    L+  +E+LA S    FP  +++VVD  
Sbjct: 1   ALLLLSSLVLATIGAPYIAQLLNGFPTPLRNARLQRVVERLADSAGAGFPPWEVYVVD-- 58

Query: 129 TRSSHSNAYMYGFFKNKRIVLYDTLIQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAVQV 188
             S   NA+  G  KNKR+V+   L+     ++E+ AV+ HE+GH K  H++ S     +
Sbjct: 59  --SPQPNAFALGGGKNKRVVVTTGLLL-ALTEDELAAVLGHEIGHIKARHSVESMSQGLL 115

Query: 189 LTLLQFGGYTLVRNSTDLFRSFGFDTQPVLIGLIIFQHTVIPIQHLVSFGLNLVSRSFEF 248
           L LL   G   +      F + GF T                   L+   L   SR  E+
Sbjct: 116 LNLLLLLGAAALGGRALGFNANGFLT--------------ALGIFLLQLLLLPYSRKQEY 161

Query: 249 QADAFAKKLGYA----------SALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERL 298
           +AD    +LG             A    L KL  ENLS ++    Y     +HPPLVER+
Sbjct: 162 EADEAGARLGGDKDLARAGYKPRAAVKFLAKLAAENLSRVSGGKLYPELLSTHPPLVERI 221

Query: 299 AA 300
            A
Sbjct: 222 QA 223

Length = 223
>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|235186 PRK03982, PRK03982, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|179418 PRK02391, PRK02391, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235478 PRK05457, PRK05457, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 309
KOG2719428 consensus Metalloprotease [General function predic 100.0
PRK03001283 M48 family peptidase; Provisional 100.0
PRK03982288 heat shock protein HtpX; Provisional 100.0
PRK01265324 heat shock protein HtpX; Provisional 100.0
PRK03072288 heat shock protein HtpX; Provisional 100.0
PRK02391296 heat shock protein HtpX; Provisional 100.0
PRK02870336 heat shock protein HtpX; Provisional 100.0
PRK04897298 heat shock protein HtpX; Provisional 100.0
PRK05457284 heat shock protein HtpX; Provisional 100.0
PRK01345317 heat shock protein HtpX; Provisional 100.0
PF01435226 Peptidase_M48: Peptidase family M48 This is family 100.0
COG0501302 HtpX Zn-dependent protease with chaperone function 99.97
COG4783 484 Putative Zn-dependent protease, contains TPR repea 99.88
PF05569299 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0 99.8
KOG2661424 consensus Peptidase family M48 [Posttranslational 99.79
COG4784 479 Putative Zn-dependent protease [General function p 99.7
COG4219337 MecR1 Antirepressor regulating drug resistance, pr 99.57
PF04228292 Zn_peptidase: Putative neutral zinc metallopeptida 98.16
PF10463206 Peptidase_U49: Peptidase U49; InterPro: IPR019504 97.8
PF06114122 DUF955: Domain of unknown function (DUF955); Inter 97.64
PRK09672305 phage exclusion protein Lit; Provisional 97.5
PRK04351149 hypothetical protein; Provisional 97.38
COG2321295 Predicted metalloprotease [General function predic 97.03
PF01863205 DUF45: Protein of unknown function DUF45; InterPro 96.86
PF04298222 Zn_peptidase_2: Putative neutral zinc metallopepti 96.8
COG1451223 Predicted metal-dependent hydrolase [General funct 96.72
smart00731146 SprT SprT homologues. Predicted to have roles in t 96.04
PF1369979 DUF4157: Domain of unknown function (DUF4157) 95.92
PF10026195 DUF2268: Predicted Zn-dependent protease (DUF2268) 95.6
PF10263157 SprT-like: SprT-like family; InterPro: IPR006640 T 95.46
PF13203292 DUF2201_N: Putative metallopeptidase domain 94.96
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 94.59
COG3091156 SprT Zn-dependent metalloprotease, SprT family [Ge 94.06
PRK04860160 hypothetical protein; Provisional 93.72
PF12388211 Peptidase_M57: Dual-action HEIGH metallo-peptidase 92.88
PF12725318 DUF3810: Protein of unknown function (DUF3810); In 92.38
COG2856213 Predicted Zn peptidase [Amino acid transport and m 92.08
PF02031132 Peptidase_M7: Streptomyces extracellular neutral p 92.03
COG4900133 Predicted metallopeptidase [General function predi 92.0
PF08325186 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1 88.96
PRK06926271 flagellar motor protein MotP; Reviewed 88.94
COG2738226 Predicted Zn-dependent protease [General function 88.88
PF00413154 Peptidase_M10: Matrixin This Prosite motif covers 84.62
TIGR00181591 pepF oligoendopeptidase F. This family represents 83.98
PF11990121 DUF3487: Protein of unknown function (DUF3487); In 83.36
COG3590654 PepO Predicted metalloendopeptidase [Posttranslati 82.95
cd04279156 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM 82.91
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 82.86
TIGR02289549 M3_not_pepF oligoendopeptidase, M3 family. This fa 82.81
cd04270244 ZnMc_TACE_like Zinc-dependent metalloprotease; TAC 81.74
COG3864 396 Uncharacterized protein conserved in bacteria [Fun 81.62
cd04268165 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_ 80.13
>KOG2719 consensus Metalloprotease [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-64  Score=447.36  Aligned_cols=307  Identities=56%  Similarity=0.945  Sum_probs=295.3

Q ss_pred             hhHHhhhccHHHhhhchhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 021688            2 LWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVM   81 (309)
Q Consensus         2 ~~~~~~~lp~~~y~~~~l~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   81 (309)
                      ++.+++.||+++|++|++|++||+|++|++.|++|.+++.++++++..|+.+++.+++...|+.+.+++|++.++++++.
T Consensus       117 ~~~~l~~LP~~iys~fvie~~~gfnk~t~~~~~~d~lk~~~v~~~l~~Pi~~~iv~i~~~~g~yF~i~~w~f~~v~~l~l  196 (428)
T KOG2719|consen  117 IYSTLLDLPSSIYSTFVLEEKHGFNKQTLSLFIIDGLKSLLVGVVLTIPIVAAIVMILKKFGPYFFIYLWLFYFVLSLLL  196 (428)
T ss_pred             HHHHHHhccHHHHHHHHHHhhcCCCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHhhhhhccccccCCCchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHh---hcC
Q 021688           82 MTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQ---QCK  158 (309)
Q Consensus        82 ~~~~p~~i~~l~~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~---~l~  158 (309)
                      ..++|..+.|+++|++|++++++++.+++++++.|+|..+++++++|+|+.+.||++.|+++.+||+++|+++.   .+ 
T Consensus       197 ~ti~p~~i~P~f~K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~-  275 (428)
T KOG2719|consen  197 LTIYPGFIAPLFGKFTPLEEGDLKEKIERLADSVGFPLSKYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHL-  275 (428)
T ss_pred             HHHHHHhhhhhhcCCCCCCCCchHHHHHHHHHhcCCCceEEEEEecCCCCCCCCeeeeeccccceEEEehhhhhhhhcc-
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999983   24 


Q ss_pred             ChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcChhhHhhcCCCC-CchHHHHH-HHHHHHHHHHHHHH
Q 021688          159 NDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNSTDLFRSFGFDT-QPVLIGLI-IFQHTVIPIQHLVS  236 (309)
Q Consensus       159 ~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~-~~~~~~~~~~~~~~  236 (309)
                      ++||+.||+|||+||++++|..++..+..+..++.+++++.+..++.+|.++|+.. .|..+|++ ++...++|++.+.+
T Consensus       276 ~~eel~AVl~HELGHW~~~H~~K~~ii~~~~l~l~~llF~~~~~~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~  355 (428)
T KOG2719|consen  276 NNEELVAVLAHELGHWKLNHVLKNIIIMQIHLFLEFLLFGFLYRNPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLN  355 (428)
T ss_pred             ccHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcCcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999966 89999987 77788999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCCCchhhhhhhcCCCCHHHHHHHccccccccC
Q 021688          237 FGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEPDKKEK  309 (309)
Q Consensus       237 ~~~~~~sR~~E~~AD~~a~~~g~~~~l~~aL~~l~~~~~~~~~~~~~~~~~~~tHP~~~~Ri~~l~~~~~~~~  309 (309)
                      +.++..||+.||+||++|.++|+++++.+||.|+..+|.+.+.+|++|+.|+++||++.|||++++..+.|+|
T Consensus       356 ~~~n~~sR~fEyqAD~fA~klGYg~~L~~AL~KL~~dnlsf~~~D~LYs~~~~~HPtvleRl~~l~~~~~k~~  428 (428)
T KOG2719|consen  356 FLMNLISRRFEYQADAFAKKLGYGKDLRQALIKLFVDNLSFPVSDPLYSAWHHLHPTVLERLDALDYLSEKKK  428 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHhhhhcCCCCCcHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999887765

>PRK03001 M48 family peptidase; Provisional Back     alignment and domain information
>PRK03982 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01265 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03072 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK02391 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK02870 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK04897 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK05457 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01345 heat shock protein HtpX; Provisional Back     alignment and domain information
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification Back     alignment and domain information
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4784 Putative Zn-dependent protease [General function prediction only] Back     alignment and domain information
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases Back     alignment and domain information
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function Back     alignment and domain information
>PRK09672 phage exclusion protein Lit; Provisional Back     alignment and domain information
>PRK04351 hypothetical protein; Provisional Back     alignment and domain information
>COG2321 Predicted metalloprotease [General function prediction only] Back     alignment and domain information
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori Back     alignment and domain information
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases Back     alignment and domain information
>COG1451 Predicted metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>smart00731 SprT SprT homologues Back     alignment and domain information
>PF13699 DUF4157: Domain of unknown function (DUF4157) Back     alignment and domain information
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function Back     alignment and domain information
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT) Back     alignment and domain information
>PF13203 DUF2201_N: Putative metallopeptidase domain Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only] Back     alignment and domain information
>PRK04860 hypothetical protein; Provisional Back     alignment and domain information
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57 Back     alignment and domain information
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised Back     alignment and domain information
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism] Back     alignment and domain information
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG4900 Predicted metallopeptidase [General function prediction only] Back     alignment and domain information
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase Back     alignment and domain information
>PRK06926 flagellar motor protein MotP; Reviewed Back     alignment and domain information
>COG2738 Predicted Zn-dependent protease [General function prediction only] Back     alignment and domain information
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site Back     alignment and domain information
>TIGR00181 pepF oligoendopeptidase F Back     alignment and domain information
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised Back     alignment and domain information
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1 Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family Back     alignment and domain information
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily Back     alignment and domain information
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
4aw6_A482 Crystal Structure Of The Human Nuclear Membrane Zin 5e-84
2ypt_A482 Crystal Structure Of The Human Nuclear Membrane Zin 2e-83
4il3_A461 Crystal Structure Of S. Mikatae Ste24p Length = 461 2e-77
>pdb|4AW6|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc Metalloprotease Zmpste24 (Face1) Length = 482 Back     alignment and structure 
Iteration: 1

 Score =  307 bits (786), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 164/339 (48%), Positives = 222/339 (65%), Gaps = 40/339 (11%)
Query: 2   LWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQK 61
           L+S L  LP+SLY+TFVIE +HGFN+QT+  F +D IK  ++   +  P+ S ++ I++ 
Sbjct: 132 LFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKI 191
Query: 62  GGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKK 121
           GG Y  IY W F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+E+IE +A S+ FPL K
Sbjct: 192 GGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTK 251
Query: 122 LFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ------------------------- 156
           ++VV+GS RSSHSNAY YGFFKNKRIVL+DTL+++                         
Sbjct: 252 VYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSE 311
Query: 157 ------------CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNST 204
                       CKN EE++AV+ HELGHWKL HT+ + I  Q+ + L F  + ++    
Sbjct: 312 EIKAKVKNKKQGCKN-EEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRK 370
Query: 205 DLFRSFGF-DTQPVLIG-LIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASA 262
           +LF +FGF D+QP LIG LIIFQ    P   ++SF L ++SR FEFQADAFAKKLG A  
Sbjct: 371 ELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKD 430
Query: 263 LRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAI 301
           L + L+KL ++NL    +D  +S +HYSHPPL+ERL A+
Sbjct: 431 LYSALIKLNKDNLGFPVSDWLFSMWHYSHPPLLERLQAL 469
>pdb|2YPT|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc Metalloprotease Zmpste24 Mutant (E336a) In Complex With A Synthetic Csim Tetrapeptide From The C-Terminus Of Prelamin A Length = 482 Back     alignment and structure
>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p Length = 461 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
4aw6_A482 CAAX prenyl protease 1 homolog; hydrolase, M48 pep 2e-81
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 4e-06
3cqb_A107 Probable protease HTPX homolog; heat shock protein 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} Length = 482 Back     alignment and structure
 Score =  254 bits (648), Expect = 2e-81
 Identities = 155/347 (44%), Positives = 216/347 (62%), Gaps = 38/347 (10%)

Query: 1   MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 60
            L+S L  LP+SLY+TFVIE +HGFN+QT+  F +D IK  ++   +  P+ S ++ I++
Sbjct: 131 TLFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIK 190

Query: 61  KGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLK 120
            GG Y  IY W F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+E+IE +A S+ FPL 
Sbjct: 191 IGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLT 250

Query: 121 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK---------------------- 158
           K++VV+GS RSSHSNAY YGFFKNKRIVL+DTL+++                        
Sbjct: 251 KVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNS 310

Query: 159 --------------NDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNST 204
                          +EE++AV+ HELGHWKL HT+ + I  Q+ + L F  + ++    
Sbjct: 311 EEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRK 370

Query: 205 DLFRSFGFDTQPV--LIGLIIFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASA 262
           +LF +FGF       +  LIIFQ    P   ++SF L ++SR FEFQADAFAKKLG A  
Sbjct: 371 ELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKD 430

Query: 263 LRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAAIDEPDKKEK 309
           L + L+KL ++NL    +D  +S +HYSHPPL+ERL A+    +  +
Sbjct: 431 LYSALIKLNKDNLGFPVSDWLFSMWHYSHPPLLERLQALKTMKQHAE 477
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253 Back     alignment and structure
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Length = 107 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
4aw6_A482 CAAX prenyl protease 1 homolog; hydrolase, M48 pep 100.0
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 99.96
3cqb_A107 Probable protease HTPX homolog; heat shock protein 99.79
3dte_A301 IRRE protein; radiotolerance, gene regulation, met 97.19
3e11_A114 Predicted zincin-like metalloprotease; DUF1025 fam 83.78
3dwb_A670 ECE-1, endothelin-converting enzyme 1; protein, di 81.04
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A Back     alignment and structure
Probab=100.00  E-value=2.6e-69  Score=503.01  Aligned_cols=307  Identities=52%  Similarity=0.922  Sum_probs=283.2

Q ss_pred             ChhHHhhhccHHHhhhchhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 021688            1 MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLV   80 (309)
Q Consensus         1 ~~~~~~~~lp~~~y~~~~l~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   80 (309)
                      ++++++++|||++|++|++|+|||||+||++.|++|++|+.+++.+++.|++++++|++++.|++||+++|++.++++++
T Consensus       131 ~l~~~l~~LP~~~Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ii~~~g~~~wl~~w~~~~~~~l~  210 (482)
T 4aw6_A          131 TLFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLV  210 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHhhhhhccccccCCCchHHHHHHHHHHHcCCCCCceEEEeCCCCCCCccEEEeccCCCceeeecHhHHhh----
Q 021688           81 MMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ----  156 (309)
Q Consensus        81 ~~~~~p~~i~~l~~~~~pl~~~~L~~~i~~l~~~~g~~~~~i~v~~~~~~s~~~NA~~~G~~~~~~I~l~~~ll~~----  156 (309)
                      +.+++|.+|.|+||+++|++|++|+++++++|++.|+|.+++|++|+|+|++++|||++|++++++||++|+++++    
T Consensus       211 ~~~iyP~~I~PLfnk~~Pl~dg~L~~~Ie~la~~~~fp~~~v~vv~gSkRs~~~NAy~~G~~~~krIVl~dtLl~~~~~~  290 (482)
T 4aw6_A          211 LVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVL  290 (482)
T ss_dssp             HHHHHHHHTHHHHSCEEECCSSHHHHHHHHHHHHTTCCEEEEEEECGGGTBSCCCEEEEESSSCEEEEEEHHHHC-----
T ss_pred             HHHHHHHHHHHHcCCCccCCcHHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCceEEEcCCCCcEEEEEchHHHhcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987    


Q ss_pred             ---------------------------------cCChhHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021688          157 ---------------------------------CKNDEEIVAVIAHELGHWKLNHTMYSFIAVQVLTLLQFGGYTLVRNS  203 (309)
Q Consensus       157 ---------------------------------l~~~~El~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~  203 (309)
                                                       | |+||++||+|||+||++++|+.++.....+..++.+.+++.+..+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~El~aVlaHElgH~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~  369 (482)
T 4aw6_A          291 NKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGC-KNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGR  369 (482)
T ss_dssp             -------------------------------CCC-CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccchhhcccchhhccCC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                                             8 999999999999999999999999998888777778888888888


Q ss_pred             hhhHhhcCCC-CCchHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCCCc
Q 021688          204 TDLFRSFGFD-TQPVLIGLI-IFQHTVIPIQHLVSFGLNLVSRSFEFQADAFAKKLGYASALRAGLVKLQEENLSAMNTD  281 (309)
Q Consensus       204 ~~~~~~~g~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~sR~~E~~AD~~a~~~g~~~~l~~aL~~l~~~~~~~~~~~  281 (309)
                      ..++..+|++ ..|..+++. ++..+++|++.+.+++.+.+||++|++||++|+++|++++++++|+|++.+|.+.+.++
T Consensus       370 ~~l~~~~G~~~~~p~~~~~llv~~~i~~P~~~l~~~i~~~~SR~~E~eAD~~a~~lg~p~~L~~AL~KL~~~n~s~~~~~  449 (482)
T 4aw6_A          370 KELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKDLYSALIKLNKDNLGFPVSD  449 (482)
T ss_dssp             SHHHHHTTCCSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHTTCCSCCC
T ss_pred             hhhHhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCCC
Confidence            8888889884 345566654 35566778888899999999999999999999999999999999999999998888889


Q ss_pred             hhhhhhhcCCCCHHHHHHHcccccccc
Q 021688          282 PWYSAYHYSHPPLVERLAAIDEPDKKE  308 (309)
Q Consensus       282 ~~~~~~~~tHP~~~~Ri~~l~~~~~~~  308 (309)
                      ++++.+++|||++.+||+++++.++|.
T Consensus       450 ~~~~~~~sTHP~~~eRI~~L~~~~~~~  476 (482)
T 4aw6_A          450 WLFSMWHYSHPPLLERLQALKTMKQHA  476 (482)
T ss_dssp             HHHHHHSCSSCCHHHHHHHHHHC----
T ss_pred             hHHHHHhcCCcCHHHHHHHHHHhhHhh
Confidence            999999999999999999999887654
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Back     alignment and structure
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A Back     alignment and structure
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17 Back     alignment and structure
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
d2ejqa1107 Uncharacterized protein TTHA0227 {Thermus thermoph 85.64
d1r55a_203 ADAM33 {Human (Homo sapiens) [TaxId: 9606]} 83.18
d1bswa_197 Snake venom metalloprotease {Five-pace snake (Agki 81.14
d1rm8a_169 Matrix metalloproteinase-16 (MMP-16) {Human (Homo 81.11
d2i47a1254 TNF-alpha converting enzyme, TACE, catalytic domai 80.41
>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: TTHA0227-like
domain: Uncharacterized protein TTHA0227
species: Thermus thermophilus [TaxId: 274]

Probab=85.64  E-value=0.37  Score=33.25  Aligned_cols=30  Identities=27%  Similarity=0.489  Sum_probs=22.9

Q ss_pred             ceeeecHh-HHhhcCCh----hHHHHHHHHHHhhh
Q 021688          145 KRIVLYDT-LIQQCKND----EEIVAVIAHELGHW  174 (309)
Q Consensus       145 ~~I~l~~~-ll~~l~~~----~El~aVlaHElgH~  174 (309)
                      .+|+++.+ +.+.++++    +|+.-++-||+||+
T Consensus        65 d~I~Lyr~pi~~~~~~~e~l~eeV~~tvvHEigHh   99 (107)
T d2ejqa1          65 RHIALYYGSFLEVAGEGFDWEAEVWETMLHELRHH   99 (107)
T ss_dssp             CEEEEEHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CEEeeeHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Confidence            47888877 66655444    56889999999996
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]} Back     information, alignment and structure
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure