Citrus Sinensis ID: 021691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
METDNTKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRITL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccccccccccccccEEEEccccccccEEEEEEEcccccccccEEEccccccccccEEEEcHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHccccccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccccEEccccccccccccccEEEEEEccccccEEEEEEEcccccccHHHHHHHcccccccccEcccHHHHHHHHHHHccHHccccEEEEEccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHcccccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
metdntkttlrpASLRWKILRQALLrrsspqnsdeqsqIGVMNRisrkttqgfnlipcqLIEKisnsrdarvcytlpvagspklfltqrvdnhadlgdfeicnrcnidntglvchwpsedvlaFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVisdgnpqvVDYIQrnvdansgafggttVKSMtlhwnqddfpyivdTFDVIVASDCTFFKEFHKDLARIIKFLLkkvgpsealffspkrgdsLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMlmsgdeswpnydkdhcypflvritl
Flexible Loop (DISEMBL)
metdntkttlrpaslRWKILRQALlrrsspqnsdeqsqiGVMNRISRKTTQGFNLIPCQLIEKISNSRDARVCYTLpvagspklfLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDeswpnydkdhcypflvritl
Low Complexity Region (SEG)
METDNTKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRITL
Disordered region (IsUnstruct)
**************LRWKILRQ**********************ISRKTTQGFNLIPCQLIEKISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRI**
Disordered Region (DISOPRED)
*****************KILRQ**********************ISRKTTQGFNLI*C********SR*ARVCYTLPVAGSPKLFLTQRVDNHA*LGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKR*************YDKDHCYPFLVRITL
Disordered Region (DISEMBL)
*********LRPASLRWKILRQALL*************IGVMNRISRKTTQGFNLIPCQLIEKISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRITL
Disordered Region (DISPRO)
*********LRPASLRWKILRQALLRR************GVMNRISRKTTQGFNLIPCQLIEKISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRITL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METDNTKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRITL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q6GQ33	318	Calmodulin-lysine N-methy	N/A	no	0.899	0.874	0.312	4e-31
B0K012	323	Calmodulin-lysine N-methy	yes	no	0.902	0.863	0.299	6e-30
Q3U2J5	323	Calmodulin-lysine N-methy	yes	no	0.893	0.854	0.305	1e-29
Q7Z624	323	Calmodulin-lysine N-methy	yes	no	0.906	0.866	0.29	5e-28
A7IQW5	206	Protein-lysine methyltran	no	no	0.317	0.475	0.314	4e-08
Q3UZW7	335	Protein FAM86A OS=Mus mus	no	no	0.550	0.507	0.240	5e-08
A4FV98	226	Protein-lysine methyltran	no	no	0.485	0.663	0.271	3e-07
Q28IN4	224	Protein-lysine methyltran	no	no	0.349	0.482	0.273	8e-07
Q96AZ1	226	Protein-lysine methyltran	no	no	0.485	0.663	0.259	2e-06
Q8CDZ2	244	Protein-lysine methyltran	no	no	0.385	0.487	0.291	1e-05

>sp|Q6GQ33|CMKMT_XENLA Calmodulin-lysine N-methyltransferase OS=Xenopus laevis GN=camkmt PE=1 SV=1

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 149/310 (48%), Gaps = 32/310 (10%)

Query: 6   TKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKIS 65
           +K     A  RWK+L QAL R+    +S        + ++S +    F L     +++I 
Sbjct: 25  SKAAQGDARARWKLLGQAL-RKERLDDS--------LQKVSVRRFNSFRLFSVVEMKEIK 75

Query: 66  NSRDARVCYTLPVAGSPKLFLTQR----VDNHADLGDFEICNRCNIDNTGLVCHWPSEDV 121
              D +  +       P+  L  R    + N AD+         + DNTG VC WPSE+V
Sbjct: 76  READCQTWFQYTCVFCPQYSLCLRHNSGISNVADILT-------SFDNTGNVCVWPSEEV 128

Query: 122 LAFFSLSHADMFRSKRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVV----DYIQR 176
           +A++ L H D+FR   V ELG G   LAGL++A + +  EV+++DGN + +    D I+R
Sbjct: 129 MAYYCLKHKDIFRGLAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAIKNVSDIIRR 188

Query: 177 NVDANSGAFGGTTVKSMTLHW-NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLL 235
               N   F    V S  L W N+ D   +   FD+++ +DC F  ++   L   IK LL
Sbjct: 189 --PQNEEMFKDRLVSSRVLRWDNETDVSQLEGHFDIVICADCLFLDQYRACLVDAIKRLL 246

Query: 236 KKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNY 295
           K  G  +A+ F+P RG++L +F    E         ENY+  I   H  L   + +   Y
Sbjct: 247 KPSG--KAMVFAPPRGNTLSQFCNLAEAAGFSIQRHENYDEHISNFHSKLKEKEAAV--Y 302

Query: 296 DKDHCYPFLV 305
           D++  YPFL+
Sbjct: 303 DENLHYPFLL 312

Catalyzes the trimethylation of 'Lys-116' in calmodulin.
Xenopus laevis (taxid: 8355)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 0

>sp|B0K012|CMKMT_RAT Calmodulin-lysine N-methyltransferase OS=Rattus norvegicus GN=Camkmt PE=1 SV=1

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 22/301 (7%)

Query: 13  ASLRWKILRQALLRRSSPQNSDEQSQIG-VMNRISRKTTQGFNLIPCQLIEKISNSRDAR 71
            ++RWK+LRQ L          +Q Q+   +  +S +  + FNL      +     ++A 
Sbjct: 37  GAVRWKLLRQVL----------KQKQLDDGLRHVSVRRFESFNLFSVTEAKNRGTEKEAG 86

Query: 72  VCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHAD 131
                     P+  ++ R  N   L   ++    + DNTG VC WPSE+VLA++ L H+ 
Sbjct: 87  AWVQYTSIFYPEYSISLR-RNSGSLSVEDVLT--SFDNTGNVCIWPSEEVLAYYCLKHSH 143

Query: 132 MFRSKRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN--SGAFGGT 188
           +FR   V ELG G   LAGL++A + +  EV+++DGN + +  +   + +N  +G F   
Sbjct: 144 LFRDLAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAIRNVNSIIASNKKTGVFKTQ 203

Query: 189 TVKSMTLHW-NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS 247
            + S  L W N+ D   +   FD+++ +DC F  ++   L   IK LL+  G  +AL F+
Sbjct: 204 KISSCVLRWDNKTDVSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLLQPSG--KALVFA 261

Query: 248 PKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRI 307
           P+RG++ ++F    E   L     ENY+  I   H  L    E    Y+++  YP L+ +
Sbjct: 262 PRRGNTFNQFCNLAEKAGLSLQRHENYDERISNFHSKLKK--EGSDVYEENLHYPLLLIL 319

Query: 308 T 308
           T
Sbjct: 320 T 320

Catalyzes the trimethylation of 'Lys-116' in calmodulin.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q3U2J5|CMKMT_MOUSE Calmodulin-lysine N-methyltransferase OS=Mus musculus GN=Camkmt PE=2 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 149/304 (49%), Gaps = 28/304 (9%)

Query: 13  ASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKISNSRDARV 72
            ++RW++LRQ L ++   Q  D       +  +S +  + FNL       K    ++A V
Sbjct: 37  GAVRWQLLRQVLKQK---QLDDH------LRHVSVRRFESFNLFSVTEATKKGTEKEAGV 87

Query: 73  CYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADM 132
                    PK  ++ R  N   L   ++    + DNTG VC WPSE+VLA + L H+ +
Sbjct: 88  WVQYTSIFYPKYSISVR-HNSGSLNVEDVLT--SFDNTGNVCIWPSEEVLAHYCLKHSHI 144

Query: 133 FRSKRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA------NSGAF 185
           FR   V ELG G   LAGL++A + +  EV+++DGN + +    RNVD+       +G F
Sbjct: 145 FRDLAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAI----RNVDSIIACNKKTGVF 200

Query: 186 GGTTVKSMTLHW-NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEAL 244
               + S  L W N+ D   +   FD+++ +DC F  ++   L   IK LL+  G  +A+
Sbjct: 201 KTPKISSRVLRWDNETDVSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLLQPTG--KAV 258

Query: 245 FFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFL 304
            F+P+RG++ ++F    E         ENY+  I   H  L    E    Y+++  YP L
Sbjct: 259 VFAPRRGNTFNQFCNLAEKAGFSLQRHENYDEPISNFHSKLKK--EGSDIYEENLHYPLL 316

Query: 305 VRIT 308
           + +T
Sbjct: 317 LILT 320

Catalyzes the trimethylation of 'Lys-116' in calmodulin.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q7Z624|CMKMT_HUMAN Calmodulin-lysine N-methyltransferase OS=Homo sapiens GN=CAMKMT PE=1 SV=2

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 147/300 (49%), Gaps = 20/300 (6%)

Query: 13  ASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKISNSRDARV 72
            + RWK+LRQ L ++              +  +S +  + FNL      ++     +   
Sbjct: 37  GAARWKLLRQVLKQKHLDD---------CLRHVSVRRFESFNLFSVTEGKERETEEEVGA 87

Query: 73  CYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADM 132
                    P+  ++ R  N   L   ++    + DNTG VC WPSE+VLA++ L H ++
Sbjct: 88  WVQYTSIFCPEYSISLR-HNSGSLNVEDVLT--SFDNTGNVCIWPSEEVLAYYCLKHNNI 144

Query: 133 FRSKRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN--SGAFGGTT 189
           FR+  V ELG G   LAGL++A + +  EV+++DGN + +  +Q  +  N  +G F    
Sbjct: 145 FRALAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAIRNVQDIITRNQKAGVFKTQK 204

Query: 190 VKSMTLHW-NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP 248
           + S  L W N+ D   +   FD+++ +DC F  ++   L   IK LL+  G  +A+ F+P
Sbjct: 205 ISSCVLRWDNETDVSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLLQPRG--KAMVFAP 262

Query: 249 KRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRIT 308
           +RG++L++F    E         ENY+  I   H  L    E+   Y+++  YP L+ +T
Sbjct: 263 RRGNTLNQFCNLAEKAGFCIQRHENYDEHISNFHSKLKK--ENPDIYEENLHYPLLLILT 320

Catalyzes the trimethylation of 'Lys-116' in calmodulin.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|A7IQW5|MT21_CAEEL Protein-lysine methyltransferase C42C1.13 OS=Caenorhabditis elegans GN=C42C1.13 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 7/105 (6%)

Query: 116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQ 175
           W S  +   +   +   F  K+V+ELGSG G+ G+ +AA     +V+I+D  P+ +  I+
Sbjct: 35  WDSALMTIHYFFKYPKPFEGKKVLELGSGTGVGGIALAAL--GADVIITD-LPERLALIE 91

Query: 176 RNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF 220
           +NV+AN     G  +K   L W +D  P   +  D+++A DC ++
Sbjct: 92  KNVEANR-KLTGNRIKVQVLDWTKDRIP---EGLDMVLAIDCVYY 132

Protein-lysine N-methyltransferase.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q3UZW7|FA86A_MOUSE Protein FAM86A OS=Mus musculus GN=Fam86a PE=2 SV=1

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 13/183 (7%)

Query: 109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNP 168
            TGLV  W +   LA +++ +   F  + ++ELGSG GL GL I         + SD + 
Sbjct: 133 TTGLVT-WDAALYLAEWAIENPAAFTDRTILELGSGAGLTGLAICKACCPRAYIFSDCHA 191

Query: 169 QVVDYIQRNVDANSGAF--------GGTTVKSMTLHWNQDDFPYIVD-TFDVIVASDCTF 219
           QV++ ++ NV  N  +         G + V    L W++     +     DV++A+D  +
Sbjct: 192 QVLEQLRGNVLLNGFSLEPHTPIDAGSSKVTVAQLDWDEVTASQLSAFQADVVIAADVLY 251

Query: 220 FKEFHKDLARIIKFL---LKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNA 276
             E    L R++K L    +K  P   + ++ +  D+   F+EE++   +++  +  +  
Sbjct: 252 CWEMTLSLVRVLKMLEDCQRKSAPDVYVAYTIRSQDTGKLFIEELDRAGIYWEEVPPHTG 311

Query: 277 EIW 279
           +++
Sbjct: 312 KLF 314

Mus musculus (taxid: 10090)

>sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG 183
           +F   + D FR K+VIELG+G G+ G  I A  +  +V I+D  P V++ IQ NV AN  
Sbjct: 66  YFESQNVD-FRGKKVIELGAGTGIVG--ILAALQGGDVTITD-LPLVLEQIQGNVQANVP 121

Query: 184 AFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEA 243
             G   V++++   +Q  FP     +D+++ +D  + +     L   ++ L    GP   
Sbjct: 122 PGGRAQVRALSWGIDQHVFP---GDYDLVLGADIVYLEPTFPLLLGTLRHL---CGPHGT 175

Query: 244 LFFSPKRGD--SLDKFLEEIEGNHLHFSII---ENYNAEIWK-RHQ 283
           ++ + K  +    + F + +   H    +    E+ N  I++ RH+
Sbjct: 176 IYLASKMREEHGTESFFQHLLPQHFQLELAQRDEDENVNIYRARHR 221

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 9/117 (7%)

Query: 133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS 192
           F+ K+VIELG+G G+ G++++       V ++D  P  +  IQ+NV AN  +     V +
Sbjct: 75  FKGKKVIELGAGTGIVGILVSLL--GGHVTLTD-LPHALSQIQKNVSANVSSNNPPQVCA 131

Query: 193 MTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249
           ++   +Q+ FP     +D ++ +D  +  + +  L + +++L    GP  ++F S K
Sbjct: 132 LSWGLDQEKFP---QDYDFVLGADIVYLHDTYPLLIQTLQYL---CGPQTSIFLSSK 182

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q96AZ1|MT21B_HUMAN Protein-lysine methyltransferase METTL21B OS=Homo sapiens GN=METTL21B PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 16/166 (9%)

Query: 124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG 183
           +F   + D FR K+VIELG+G G+ G  I A  +  +V I+D  P  ++ IQ NV AN  
Sbjct: 66  YFESQNVD-FRGKKVIELGAGTGIVG--ILAALQGGDVTITD-LPLALEQIQGNVQANVP 121

Query: 184 AFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEA 243
           A G   V++++   +   FP     +D+++ +D  + +     L   ++ L +   P   
Sbjct: 122 AGGQAQVRALSWGIDHHVFP---ANYDLVLGADIVYLEPTFPLLLGTLQHLCR---PHGT 175

Query: 244 LFFSPK--RGDSLDKFLEEIEGNHLHFSII---ENYNAEIWK-RHQ 283
           ++ + K  +    + F + +   H    +    E+ N  I++ RH+
Sbjct: 176 IYLASKMRKEHGTESFFQHLLPQHFQLELAQRDEDENVNIYRARHR 221

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8CDZ2|MT21E_MOUSE Protein-lysine methyltransferase METTL21E OS=Mus musculus GN=Mettl21e PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 116 WPSEDVLAFFSLSHADMFR--SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDY 173
           WPS  VL +F  +HA  +    K VIE+G+G GL  +V  A+     V+ +D  P+++  
Sbjct: 69  WPSALVLCYFLETHAKQYNMVDKNVIEIGAGTGLVSIV--ASLLGARVIATDL-PELLGN 125

Query: 174 IQRNVDANSGAFGGTTVKSMTLHWN---QDDFPYIVDTFDVIVASDCTFFKEFHKDLARI 230
           +Q N+  N+        +   L W      +FP   + FD I+A+D  +   F ++L   
Sbjct: 126 LQYNISRNTKMKCKHLPQVKELSWGVALDRNFPRSSNNFDYILAADVVYAHPFLEELLMT 185

Query: 231 IKFLLKK 237
              L K+
Sbjct: 186 FDHLCKE 192

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
225431114	312	PREDICTED: calmodulin-lysine N-methyltra	0.983	0.974	0.704	1e-124
356502108	308	PREDICTED: calmodulin-lysine N-methyltra	0.987	0.990	0.691	1e-123
297802326	308	hypothetical protein ARALYDRAFT_328155 [	0.935	0.938	0.701	1e-121
240256174	304	S-adenosyl-L-methionine-dependent methyl	0.954	0.970	0.674	1e-120
224071341	308	predicted protein [Populus trichocarpa]	0.967	0.970	0.686	1e-119
449434482	318	PREDICTED: calmodulin-lysine N-methyltra	0.980	0.952	0.628	1e-113
357518013	317	hypothetical protein MTR_8g075480 [Medic	0.977	0.952	0.638	1e-112
255634682	258	unknown [Glycine max]	0.812	0.972	0.715	1e-101
194692720	342	unknown [Zea mays] gi|413956372|gb|AFW89	0.951	0.859	0.552	1e-92
326517788	348	predicted protein [Hordeum vulgare subsp	0.961	0.853	0.540	6e-92

>gi|225431114|ref|XP_002265595.1| PREDICTED: calmodulin-lysine N-methyltransferase [Vitis vinifera] gi|297735003|emb|CBI17365.3| unnamed protein product [Vitis vinifera]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/315 (70%), Positives = 260/315 (82%), Gaps = 11/315 (3%)

Query: 1   METDNTKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQL 60
           ME  +T T  R ++LRW+ILR+A+LRR  PQ  D+QS+IG+ NRISRKT+ GFNLIP  L
Sbjct: 1   MEATSTMTP-RASTLRWEILRRAVLRRPPPQ-PDDQSRIGI-NRISRKTSHGFNLIPHHL 57

Query: 61  I----EKISNS---RDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLV 113
           +    E  S S   RDAR+CYTLPV  + KL+LTQRVD+ A+L DFEICNR +IDNTGLV
Sbjct: 58  MDGHDEHFSGSDRSRDARICYTLPVESASKLYLTQRVDDRANLNDFEICNRYDIDNTGLV 117

Query: 114 CHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDY 173
           CHWPSED+LA+F LSH DMFRSK+VIELGSGYGLAGLVIAA T+ALE+VISDGNPQVVDY
Sbjct: 118 CHWPSEDILAYFCLSHTDMFRSKKVIELGSGYGLAGLVIAAVTDALEIVISDGNPQVVDY 177

Query: 174 IQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKF 233
           IQ N+DAN GAFG T VKSMTLHWNQ++   I DT+D+IVASDCTFFKE HK LAR +KF
Sbjct: 178 IQHNIDANCGAFGDTRVKSMTLHWNQEEISNISDTYDIIVASDCTFFKESHKGLARTVKF 237

Query: 234 LLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWP 293
           LLK  GPSEA+F SP+RGDSLDKFL+ I+ + LHFSI ENY+ E+WKRHQ LM+GD+SWP
Sbjct: 238 LLKN-GPSEAIFLSPRRGDSLDKFLDIIKQSGLHFSISENYDTEVWKRHQELMNGDDSWP 296

Query: 294 NYDKDHCYPFLVRIT 308
           NY+ DHCYP LVRIT
Sbjct: 297 NYEVDHCYPLLVRIT 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502108|ref|XP_003519863.1| PREDICTED: calmodulin-lysine N-methyltransferase-like [Glycine max]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/308 (69%), Positives = 253/308 (82%), Gaps = 3/308 (0%)

Query: 4   DNTKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLI-E 62
           DN  T  + +SLRWKILR+ALL RSSP + DEQSQ+ +   ISR+T  GFNLI   +I +
Sbjct: 2   DNRTTNEKASSLRWKILRRALLSRSSPPHPDEQSQM-ITKSISRRTGHGFNLILSHVIAD 60

Query: 63  KISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVL 122
             S++RDARVCYTLP+ G+P+LFLTQRVDN ADL DFEICNR NIDNTGLVC+WPSEDVL
Sbjct: 61  SSSSTRDARVCYTLPIPGAPQLFLTQRVDNRADLSDFEICNRYNIDNTGLVCNWPSEDVL 120

Query: 123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANS 182
           A + LSHAD+FRSK+VIELGSGYGLAG  IAA TEA EVVISDGNPQVVDY QRN++ANS
Sbjct: 121 AHYCLSHADIFRSKKVIELGSGYGLAGFAIAAATEASEVVISDGNPQVVDYTQRNIEANS 180

Query: 183 GAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSE 242
           GAFG T VKSMTLHWNQ+D   I D+FD+I+ASDCTFFK+FH+DLARI+K LL K G SE
Sbjct: 181 GAFGNTVVKSMTLHWNQEDTSNIADSFDIIIASDCTFFKDFHRDLARIVKHLLSKAGSSE 240

Query: 243 ALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGD-ESWPNYDKDHCY 301
           A+F SPKRG+SLD FLE  + N LHFS++ENY+ E+WKRH+  ++ D +SWP+YDK H Y
Sbjct: 241 AIFLSPKRGNSLDLFLEVAKENSLHFSVMENYDEEVWKRHKGFLNEDRDSWPSYDKGHSY 300

Query: 302 PFLVRITL 309
           P L+RITL
Sbjct: 301 PLLIRITL 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802326|ref|XP_002869047.1| hypothetical protein ARALYDRAFT_328155 [Arabidopsis lyrata subsp. lyrata] gi|297314883|gb|EFH45306.1| hypothetical protein ARALYDRAFT_328155 [Arabidopsis lyrata subsp. lyrata]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/298 (70%), Positives = 247/298 (82%), Gaps = 9/298 (3%)

Query: 14  SLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIE---KISNSRDA 70
           +LRWKILRQALLRRS     D QSQ    NRISRK TQGFNLIPC +++   +   SR+A
Sbjct: 14  ALRWKILRQALLRRS-----DSQSQ-AETNRISRKATQGFNLIPCHVVDSSPQSDKSREA 67

Query: 71  RVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHA 130
            +CYT P+ GSPKL+LTQRVDN +DL DFEI NR NIDNTGLVC WPSE+VLA+F +S A
Sbjct: 68  CLCYTFPITGSPKLYLTQRVDNCSDLNDFEISNRYNIDNTGLVCQWPSEEVLAYFCMSQA 127

Query: 131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTV 190
           D FR KRVIELGSGYGLAGLVIAA TEA EVVISDGNPQVV+YI+RN+++NS AFGGT+V
Sbjct: 128 DRFRGKRVIELGSGYGLAGLVIAAVTEASEVVISDGNPQVVNYIKRNIESNSMAFGGTSV 187

Query: 191 KSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR 250
           K+M LHWNQ + P + +TFD+IVASDCTFFKEFHK LAR IK LLK   PSEALFFSPKR
Sbjct: 188 KAMELHWNQHELPELTNTFDIIVASDCTFFKEFHKHLARTIKMLLKAKEPSEALFFSPKR 247

Query: 251 GDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRIT 308
           GDSLDKFL+EIE   LH+++ ENY+A+IWKRH+ L+ GD++WPNYDK+HCYP L+++T
Sbjct: 248 GDSLDKFLKEIEDIGLHYNLTENYDAQIWKRHETLVKGDDAWPNYDKNHCYPLLIQVT 305

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256174|ref|NP_680769.4| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332661199|gb|AEE86599.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/304 (67%), Positives = 244/304 (80%), Gaps = 9/304 (2%)

Query: 8   TTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIE---KI 64
           T+   ++LRWKILRQALLRRS  Q+  E        RISRK TQGFNLIPCQ+++   + 
Sbjct: 4   TSSSSSALRWKILRQALLRRSDSQSQTE------TKRISRKATQGFNLIPCQVVDSSPQS 57

Query: 65  SNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAF 124
             SR+A VCYTLP+ GSPKL+LTQRVDN +DL DFEI NR NIDNTGLVC WPSE+VLA+
Sbjct: 58  DKSREASVCYTLPITGSPKLYLTQRVDNCSDLNDFEISNRYNIDNTGLVCQWPSEEVLAY 117

Query: 125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA 184
           F  S  + FR KRVIELGSGYGLAGLVIAA TEA EVVISDGNPQVV+YI+RN++ NS A
Sbjct: 118 FCKSQPERFRGKRVIELGSGYGLAGLVIAAATEASEVVISDGNPQVVNYIKRNIETNSMA 177

Query: 185 FGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEAL 244
           FGGT+VK+M LHWNQ     + +TFD+IVASDCTFFKEFHKDLAR IK LLK    SEAL
Sbjct: 178 FGGTSVKAMELHWNQHQLSELTNTFDIIVASDCTFFKEFHKDLARTIKMLLKAKKASEAL 237

Query: 245 FFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFL 304
           FFSPKRGDSL+KF++EI+   LH+ + ENY+A++WKRH+ L+ GDE+WPNYDK+HCYP L
Sbjct: 238 FFSPKRGDSLEKFMKEIKDIGLHYILTENYDAQVWKRHETLVKGDEAWPNYDKNHCYPLL 297

Query: 305 VRIT 308
           ++IT
Sbjct: 298 IQIT 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071341|ref|XP_002303412.1| predicted protein [Populus trichocarpa] gi|118482370|gb|ABK93108.1| unknown [Populus trichocarpa] gi|222840844|gb|EEE78391.1| predicted protein [Populus trichocarpa]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/309 (68%), Positives = 248/309 (80%), Gaps = 10/309 (3%)

Query: 7   KTTLRPASLRWKILRQALLR--RSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIE-- 62
           KT  +P+SLRW ILRQALLR  R SP N    +    + RISRKT QGFN IP Q++E  
Sbjct: 4   KTNTKPSSLRWAILRQALLRKTRESPDNQSPSA----IKRISRKTHQGFNFIPGQVVEDH 59

Query: 63  --KISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSED 120
             + SN RD  +CYTLPV GSPK+ + QRV+N  DL DFE+ +R N+DNTGLVC WPSED
Sbjct: 60  VNEESNFRDVCICYTLPVDGSPKILVKQRVNNGVDLSDFEVSDRYNVDNTGLVCQWPSED 119

Query: 121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA 180
           VLA+F LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNP VVDYIQ ++DA
Sbjct: 120 VLAYFCLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPVVVDYIQHSIDA 179

Query: 181 NSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGP 240
           NS AFG T VK++TLHW+++    I +TFDVIVASDCTFFKEFH  LA  +K LLK VG 
Sbjct: 180 NSTAFGNTKVKTVTLHWDEEVTYNISNTFDVIVASDCTFFKEFHNALACTVKLLLKNVGR 239

Query: 241 SEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHC 300
           SEA+FFSPKRGDSLDKFLE+IE N LHFSI ENY++E+WKRHQ  ++GD++WP+Y+K HC
Sbjct: 240 SEAIFFSPKRGDSLDKFLEKIEENGLHFSITENYDSEVWKRHQGFVAGDDTWPSYEKHHC 299

Query: 301 YPFLVRITL 309
           YP +VRITL
Sbjct: 300 YPLMVRITL 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434482|ref|XP_004135025.1| PREDICTED: calmodulin-lysine N-methyltransferase-like [Cucumis sativus] gi|449525206|ref|XP_004169609.1| PREDICTED: calmodulin-lysine N-methyltransferase-like [Cucumis sativus]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/320 (62%), Positives = 243/320 (75%), Gaps = 17/320 (5%)

Query: 4   DNTKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEK 63
           D  K  L+ +SLRWKILRQAL+ RSS +   +QS+I     ISR+T  GFNLIP  + + 
Sbjct: 2   DTNKPILKASSLRWKILRQALIPRSSSRK--DQSEIDT-EHISRRTKNGFNLIPSSIADD 58

Query: 64  ISNS--------------RDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDN 109
           I +               RD RVCYTLP+ G+ KLFL QR+D+ ADL DF+ICN+  IDN
Sbjct: 59  IEDEGAGGFAVSHCYDHRRDRRVCYTLPIDGASKLFLKQRMDDVADLDDFKICNKYEIDN 118

Query: 110 TGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQ 169
           TGLVCHWPSEDVLA+F L H+D+FR KRVIELGSGYGLAGLV+AA+TEA EVVI+DGNPQ
Sbjct: 119 TGLVCHWPSEDVLAYFCLLHSDLFRCKRVIELGSGYGLAGLVVAASTEASEVVITDGNPQ 178

Query: 170 VVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLAR 229
           VV+YIQ N+  NS AFGGT V S+TLHWNQ++   I D+FD+I+ASDCTFFKE+H+ LAR
Sbjct: 179 VVEYIQHNIAMNSKAFGGTRVDSLTLHWNQENVSNISDSFDLIIASDCTFFKEYHRGLAR 238

Query: 230 IIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGD 289
            +  LLKK   SEA+FFSPKRGDSL KFLEEI+ N LHFS+ E Y+AE+WK H+   +GD
Sbjct: 239 TVMSLLKKAESSEAIFFSPKRGDSLMKFLEEIKANGLHFSVTEKYDAEVWKLHEKFSNGD 298

Query: 290 ESWPNYDKDHCYPFLVRITL 309
           +SWP Y+KDHCYP LVRITL
Sbjct: 299 DSWPGYEKDHCYPLLVRITL 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518013|ref|XP_003629295.1| hypothetical protein MTR_8g075480 [Medicago truncatula] gi|355523317|gb|AET03771.1| hypothetical protein MTR_8g075480 [Medicago truncatula]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/315 (63%), Positives = 241/315 (76%), Gaps = 13/315 (4%)

Query: 7   KTTLRPASLRWKILRQALLRRSSPQNS------DEQSQIGVMNRISRKTTQGFNLIPCQL 60
           +T  + +SLRWKILRQALL   S  +       DEQSQ  +  RISRKT+ GFNLI   +
Sbjct: 4   RTNEKASSLRWKILRQALLSNPSSSSCSSSTNSDEQSQTSI-KRISRKTSHGFNLIQSHV 62

Query: 61  IE----KISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHW 116
           I       +N +DARVCYTLP+  +P+LFL QRVDNHADL DF+ CN+ NIDNTGLVC+W
Sbjct: 63  IHDERGTSNNYKDARVCYTLPIPDTPQLFLRQRVDNHADLNDFQTCNKYNIDNTGLVCNW 122

Query: 117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQR 176
           PSEDVLA + LSH D+FRSK+VIELGSGYGLAG VIAA TEA EVVISDGNPQVVDY QR
Sbjct: 123 PSEDVLAHYCLSHRDIFRSKKVIELGSGYGLAGFVIAAITEASEVVISDGNPQVVDYTQR 182

Query: 177 NVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLK 236
           N++ANSGAFG T VKSM LHWNQ+D   + D FD+IVASDCTFFK+FH+DLARI+K LL 
Sbjct: 183 NIEANSGAFGDTVVKSMKLHWNQEDTSSVADAFDIIVASDCTFFKDFHRDLARIVKHLLS 242

Query: 237 KVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDES--WPN 294
           K   SEA+F SPKRG+SLD FLE  E + LHFS+ ENY+ E+WKRH+  ++G +   WP+
Sbjct: 243 KTESSEAIFLSPKRGNSLDLFLEVAEEHGLHFSVTENYDKEVWKRHEGFLNGADRDPWPS 302

Query: 295 YDKDHCYPFLVRITL 309
           Y+  HCYP L++ITL
Sbjct: 303 YETGHCYPLLIKITL 317

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634682|gb|ACU17703.1| unknown [Glycine max]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/253 (71%), Positives = 210/253 (83%), Gaps = 2/253 (0%)

Query: 4   DNTKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLI-E 62
           DN  T  + +SLRWKILR+ALL RSSP + DEQSQ+ +   ISR+T  GFNLI   +I +
Sbjct: 2   DNRTTNEKASSLRWKILRRALLSRSSPPHPDEQSQM-ITKSISRRTGHGFNLILSHVIAD 60

Query: 63  KISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVL 122
             S++RDARVCYTLP+ G+P+LFLTQRVDN ADL DFEICNR NIDNTGLVC+WPSEDVL
Sbjct: 61  SSSSTRDARVCYTLPIPGAPQLFLTQRVDNRADLSDFEICNRYNIDNTGLVCNWPSEDVL 120

Query: 123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANS 182
           A + LSHAD+FRSK+VIELGSGYGLAG  IAA TEA EVVISDGNPQVVDY QRN++ANS
Sbjct: 121 AHYCLSHADIFRSKKVIELGSGYGLAGFAIAAATEASEVVISDGNPQVVDYTQRNIEANS 180

Query: 183 GAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSE 242
           GAFG T VKSMTLHWNQ+D   I D+FD+I+ASDCTFFK+FH+DLARI+K LL K G SE
Sbjct: 181 GAFGNTVVKSMTLHWNQEDTSNIADSFDIIIASDCTFFKDFHRDLARIVKHLLSKAGSSE 240

Query: 243 ALFFSPKRGDSLD 255
           A+F SPKRG+S D
Sbjct: 241 AIFLSPKRGNSSD 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194692720|gb|ACF80444.1| unknown [Zea mays] gi|413956372|gb|AFW89021.1| hypothetical protein ZEAMMB73_601321 [Zea mays]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 175/317 (55%), Positives = 224/317 (70%), Gaps = 23/317 (7%)

Query: 13  ASLRWKILRQALLRRSSPQ------NSDEQSQIGVMNRISRKTTQGFNLIPC------QL 60
           A+ RW ILR+ALL RSS        +SD Q + G  N ISRK ++GFNLI C      QL
Sbjct: 21  ATQRWSILRRALLARSSSARALGGISSDHQIKDGT-NNISRKASRGFNLIECHSLPISQL 79

Query: 61  IEKISNS---------RDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTG 111
           ++ + NS         +D  VCY LP  GS KL L  R ++  +L D E  N+ NID TG
Sbjct: 80  LKSLGNSLNENDFECQKDVYVCYKLPCRGSSKLDLVCRKEDSLELNDIEASNKYNIDTTG 139

Query: 112 LVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVV 171
           LVC WPSE+VLA++ ++H+D+FRSK+V+ELGSGYGLAGLVIAA+T A EVVISDGNPQV 
Sbjct: 140 LVCCWPSEEVLAYYCINHSDVFRSKKVLELGSGYGLAGLVIAASTNADEVVISDGNPQVA 199

Query: 172 DYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARII 231
           +YIQ+N+  N+  FG T VKS+ LHW+++    +++TFD+IVASDCTFFK+FHK LAR +
Sbjct: 200 EYIQKNISINAETFGETKVKSLILHWDKEQASEMLNTFDIIVASDCTFFKQFHKGLARTV 259

Query: 232 KFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSG-DE 290
           K LLK    S+A+F SPKRGDSLDKFL  I+ N L   +IENY+  +W  H+ L++G D 
Sbjct: 260 KSLLKHSATSQAIFLSPKRGDSLDKFLGIIKENGLSCELIENYDPTVWNLHKKLVAGEDR 319

Query: 291 SWPNYDKDHCYPFLVRI 307
           +WPNYDK+HCYP LVRI
Sbjct: 320 TWPNYDKEHCYPLLVRI 336

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326517788|dbj|BAK03812.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 173/320 (54%), Positives = 223/320 (69%), Gaps = 23/320 (7%)

Query: 13  ASLRWKILRQALLRRS-SPQNSDEQS----QIGVMNRISRKTTQGFNLIPCQLI------ 61
           ASLRW ILR+ALL RS SP  S+  S    + G  N+ISRKT++GFNLI C  +      
Sbjct: 25  ASLRWHILRRALLSRSASPHASEGTSKDPQEKGDTNKISRKTSRGFNLIKCHTVPISQLN 84

Query: 62  -----------EKISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNT 110
                        +   RD  VCY LP  GSP+L +  R D+  +L D E  NR NID T
Sbjct: 85  KSQGDSLNRNENGVECQRDVCVCYKLPCDGSPELNVIYRRDDSLELNDIEASNRFNIDTT 144

Query: 111 GLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQV 170
           GLVC WPSE+VLAF+ ++H+DMFRSKRV+ELG+GYGLAGLVIAA+  A EV+ISDGNPQV
Sbjct: 145 GLVCCWPSEEVLAFYCINHSDMFRSKRVLELGAGYGLAGLVIAASANAGEVIISDGNPQV 204

Query: 171 VDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARI 230
           V YIQ+N+  N+  FG T VK MTLHW+Q+    ++++FD+IVASDCTFFK+FH+ LA  
Sbjct: 205 VGYIQQNMSINAKTFGQTKVKPMTLHWDQEQASDMLNSFDIIVASDCTFFKQFHQSLAWT 264

Query: 231 IKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDE 290
           +K LLK    S+A+F SP+RGDSL+KFLE I+   L + +IENY+  +W  H+  ++GD+
Sbjct: 265 VKSLLKHSETSQAIFLSPRRGDSLNKFLETIKEYGLCYELIENYDPTVWNLHESYVAGDD 324

Query: 291 -SWPNYDKDHCYPFLVRITL 309
            SWPNY+++HCYP LVRIT 
Sbjct: 325 TSWPNYNEEHCYPLLVRITF 344

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:504955358	304	AT4G35987 "AT4G35987" [Arabido	0.954	0.970	0.680	2.1e-109
RGD|1310453	323	Camkmt "calmodulin-lysine N-me	0.902	0.863	0.304	1.4e-30
MGI|MGI:1920832	323	Camkmt "calmodulin-lysine N-me	0.902	0.863	0.301	2.3e-30
UNIPROTKB|E2R197	323	CAMKMT "Uncharacterized protei	0.889	0.851	0.301	3e-30
UNIPROTKB|A7YWN4	323	LOC786620 "Uncharacterized pro	0.889	0.851	0.307	3.8e-30
UNIPROTKB|Q7Z624	323	CAMKMT "Calmodulin-lysine N-me	0.889	0.851	0.307	1.6e-29
UNIPROTKB|F1NX49	281	CAMKMT "Uncharacterized protei	0.637	0.701	0.368	4.4e-29
TAIR|locus:2078002	251	AT3G50850 "AT3G50850" [Arabido	0.404	0.498	0.323	1e-09
UNIPROTKB|F1PBM6	181	METTL21B "Uncharacterized prot	0.485	0.828	0.265	3e-09
UNIPROTKB|I3LNJ7	226	METTL21B "Uncharacterized prot	0.485	0.663	0.265	7.6e-08

TAIR|locus:504955358 AT4G35987 "AT4G35987" [Arabidopsis thaliana (taxid:3702)]

 Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
 Identities = 207/304 (68%), Positives = 245/304 (80%)

Query:     8 TTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIE---KI 64
             T+   ++LRWKILRQALLRRS     D QSQ     RISRK TQGFNLIPCQ+++   + 
Sbjct:     4 TSSSSSALRWKILRQALLRRS-----DSQSQTET-KRISRKATQGFNLIPCQVVDSSPQS 57

Query:    65 SNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAF 124
               SR+A VCYTLP+ GSPKL+LTQRVDN +DL DFEI NR NIDNTGLVC WPSE+VLA+
Sbjct:    58 DKSREASVCYTLPITGSPKLYLTQRVDNCSDLNDFEISNRYNIDNTGLVCQWPSEEVLAY 117

Query:   125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA 184
             F  S  + FR KRVIELGSGYGLAGLVIAA TEA EVVISDGNPQVV+YI+RN++ NS A
Sbjct:   118 FCKSQPERFRGKRVIELGSGYGLAGLVIAAATEASEVVISDGNPQVVNYIKRNIETNSMA 177

Query:   185 FGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEAL 244
             FGGT+VK+M LHWNQ     + +TFD+IVASDCTFFKEFHKDLAR IK LLK    SEAL
Sbjct:   178 FGGTSVKAMELHWNQHQLSELTNTFDIIVASDCTFFKEFHKDLARTIKMLLKAKKASEAL 237

Query:   245 FFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFL 304
             FFSPKRGDSL+KF++EI+   LH+ + ENY+A++WKRH+ L+ GDE+WPNYDK+HCYP L
Sbjct:   238 FFSPKRGDSLEKFMKEIKDIGLHYILTENYDAQVWKRHETLVKGDEAWPNYDKNHCYPLL 297

Query:   305 VRIT 308
             ++IT
Sbjct:   298 IQIT 301

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

RGD|1310453 Camkmt "calmodulin-lysine N-methyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 91/299 (30%), Positives = 150/299 (50%)

Query:    14 SLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKISNSRDARVC 73
             ++RWK+LRQ L ++   Q  D     G +  +S +  + FNL      +     ++A   
Sbjct:    38 AVRWKLLRQVLKQK---QLDD-----G-LRHVSVRRFESFNLFSVTEAKNRGTEKEAGAW 88

Query:    74 YTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMF 133
                     P+  ++ R  N   L   ++    + DNTG VC WPSE+VLA++ L H+ +F
Sbjct:    89 VQYTSIFYPEYSISLR-RNSGSLSVEDVLT--SFDNTGNVCIWPSEEVLAYYCLKHSHLF 145

Query:   134 RSKRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN--SGAFGGTTV 190
             R   V ELG G   LAGL++A + +  EV+++DGN + +  +   + +N  +G F    +
Sbjct:   146 RDLAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAIRNVNSIIASNKKTGVFKTQKI 205

Query:   191 KSMTLHW-NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249
              S  L W N+ D   +   FD+++ +DC F  ++   L   IK LL+  G  +AL F+P+
Sbjct:   206 SSCVLRWDNKTDVSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLLQPSG--KALVFAPR 263

Query:   250 RGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRIT 308
             RG++ ++F    E   L     ENY+  I   H  L    E    Y+++  YP L+ +T
Sbjct:   264 RGNTFNQFCNLAEKAGLSLQRHENYDERISNFHSKLKK--EGSDVYEENLHYPLLLILT 320

GO:0005737 "cytoplasm" evidence=IEA

GO:0018025 "calmodulin-lysine N-methyltransferase activity" evidence=IEA

MGI|MGI:1920832 Camkmt "calmodulin-lysine N-methyltransferase" [Mus musculus (taxid:10090)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 90/299 (30%), Positives = 147/299 (49%)

Query:    14 SLRWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKISNSRDARVC 73
             ++RW++LRQ L ++   Q  D       +  +S +  + FNL       K    ++A V 
Sbjct:    38 AVRWQLLRQVLKQK---QLDDH------LRHVSVRRFESFNLFSVTEATKKGTEKEAGVW 88

Query:    74 YTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMF 133
                     PK  ++ R  N   L   ++    + DNTG VC WPSE+VLA + L H+ +F
Sbjct:    89 VQYTSIFYPKYSISVR-HNSGSLNVEDVLT--SFDNTGNVCIWPSEEVLAHYCLKHSHIF 145

Query:   134 RSKRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN--SGAFGGTTV 190
             R   V ELG G   LAGL++A + +  EV+++DGN + +  +   +  N  +G F    +
Sbjct:   146 RDLAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAIRNVDSIIACNKKTGVFKTPKI 205

Query:   191 KSMTLHW-NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249
              S  L W N+ D   +   FD+++ +DC F  ++   L   IK LL+  G  +A+ F+P+
Sbjct:   206 SSRVLRWDNETDVSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLLQPTG--KAVVFAPR 263

Query:   250 RGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRIT 308
             RG++ ++F    E         ENY+  I   H  L    E    Y+++  YP L+ +T
Sbjct:   264 RGNTFNQFCNLAEKAGFSLQRHENYDEPISNFHSKLKK--EGSDIYEENLHYPLLLILT 320

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0018025 "calmodulin-lysine N-methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|E2R197 CAMKMT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 90/299 (30%), Positives = 151/299 (50%)

Query:    16 RWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKISNSRDARVCYT 75
             RWK+LRQ L ++    + D+      +  +S +  + FNL      +  +   +    + 
Sbjct:    40 RWKLLRQVLKQK----HLDD-----CLRHVSVRRFESFNLFSVTEAKTRATEEEVGAWFQ 90

Query:    76 LPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRS 135
                   P+  ++ R  N+  L   ++    + DNTG VC WPS++VLA++ L H+++FR 
Sbjct:    91 YTSVFYPEYSISLR-HNNGSLNVEDVLT--SFDNTGNVCKWPSQEVLAYYCLKHSNIFRD 147

Query:   136 KRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVV----DYIQRNVDANSGAFGGTTV 190
               V ELG G   LAGL++A + +  EV+++DGN + +    D I RN  A  GAF    +
Sbjct:   148 LAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAIRNVRDIITRNQKA--GAFKTRKI 205

Query:   191 KSMTLHW-NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249
              S  L W N+ D   +   F +++ +DC F  ++   L   IK LL+  G  +A+ F+P+
Sbjct:   206 SSCVLRWDNETDVSQLEGHFGIVMCADCLFLDQYRASLVDAIKRLLQPRG--KAMVFAPR 263

Query:   250 RGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRIT 308
             RG++L++F    E         ENY+  I   H  L    E+   Y+++  YP L+ +T
Sbjct:   264 RGNTLNQFCNLAEKADFSIQRHENYDEHISNFHSKLKK--ENQGVYEENLHYPLLLILT 320

GO:0018025 "calmodulin-lysine N-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|A7YWN4 LOC786620 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 92/299 (30%), Positives = 149/299 (49%)

Query:    16 RWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKISNSRDARVCYT 75
             RWK+LRQ L ++    + D+      +  IS +  + FNL     ++K     +A     
Sbjct:    40 RWKLLRQVLKQK----HLDD-----CLRHISVRRFESFNLFSVTEVKKRETEEEAGAWVQ 90

Query:    76 LPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRS 135
                   P+  +  R  N   L   ++    + DNTG VC WP+E+VLA++ L H+ +FR 
Sbjct:    91 YTSIFYPEYSIFVR-HNSGSLNVEDVLT--SFDNTGNVCIWPAEEVLAYYCLKHSGIFRD 147

Query:   136 KRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVV----DYIQRNVDANSGAFGGTTV 190
               V ELG G   LAGL++A + +  EV+++DGN + +    D I RN  A  G F    +
Sbjct:   148 LAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAIRNVRDIIARNQKA--GVFKTGNI 205

Query:   191 KSMTLHW-NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249
              S  L W N+ D   +   FD+++ +DC F  ++   L   IK LL+  G  +A+ F+P+
Sbjct:   206 SSCVLRWDNETDVSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLLQPRG--KAMVFAPR 263

Query:   250 RGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRIT 308
             RG++L++F    E         ENY+  I   H  L    E+   Y+++  +P L+ +T
Sbjct:   264 RGNTLNQFCNLAEKAGFSIQRHENYDEHISNFHSKLKK--ENQDVYEENLHFPLLLILT 320

GO:0018025 "calmodulin-lysine N-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q7Z624 CAMKMT "Calmodulin-lysine N-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 92/299 (30%), Positives = 153/299 (51%)

Query:    16 RWKILRQALLRRSSPQNSDEQSQIGVMNRISRKTTQGFNLIPCQLIEKISNSRD--ARVC 73
             RWK+LRQ L ++    + D+      +  +S +  + FNL      ++     +  A V 
Sbjct:    40 RWKLLRQVLKQK----HLDD-----CLRHVSVRRFESFNLFSVTEGKERETEEEVGAWVQ 90

Query:    74 YTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMF 133
             YT      P+  ++ R  N   L   ++    + DNTG VC WPSE+VLA++ L H ++F
Sbjct:    91 YTSIFC--PEYSISLR-HNSGSLNVEDVLT--SFDNTGNVCIWPSEEVLAYYCLKHNNIF 145

Query:   134 RSKRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN--SGAFGGTTV 190
             R+  V ELG G   LAGL++A + +  EV+++DGN + +  +Q  +  N  +G F    +
Sbjct:   146 RALAVCELGGGMTCLAGLMVAISADVKEVLLTDGNEKAIRNVQDIITRNQKAGVFKTQKI 205

Query:   191 KSMTLHW-NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK 249
              S  L W N+ D   +   FD+++ +DC F  ++   L   IK LL+  G  +A+ F+P+
Sbjct:   206 SSCVLRWDNETDVSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLLQPRG--KAMVFAPR 263

Query:   250 RGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRIT 308
             RG++L++F    E         ENY+  I   H  L    E+   Y+++  YP L+ +T
Sbjct:   264 RGNTLNQFCNLAEKAGFCIQRHENYDEHISNFHSKLKK--ENPDIYEENLHYPLLLILT 320

GO:0018025 "calmodulin-lysine N-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NX49 CAMKMT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 77/209 (36%), Positives = 115/209 (55%)

Query:   106 NIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYG-LAGLVIAATTEALEVVIS 164
             + DNTG VC WPSE+VLA++ L H ++FR   V ELG G   LAGL++A + +  EV+++
Sbjct:    76 SFDNTGNVCLWPSEEVLAYYCLKHREIFRDLAVCELGGGMTCLAGLMVAISADVKEVLLT 135

Query:   165 DGNPQVV----DYIQRNVDANSGAFGGTTVKSMTLHW-NQDDFPYIVDTFDVIVASDCTF 219
             DGN + +    D I RNV A  G F    V S  L W N+ D   +   FD+++ +DC F
Sbjct:   136 DGNEKAIKNVSDIITRNVIA--GVFKTQKVSSCILRWDNETDVSQLEGHFDIVMCADCLF 193

Query:   220 FKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIW 279
                +   L   IK LL+  G  +A+ F+P RG++L++F    E         ENY+  I 
Sbjct:   194 LDRYRASLVDAIKRLLQPSG--KAMVFAPHRGNTLNQFCNLAEKAGFSIQRHENYDEHIS 251

Query:   280 KRHQMLMSGDESWPNYDKDHCYPFLVRIT 308
               H  L + ++    YD++  YP L+ +T
Sbjct:   252 NFHSKLKNEEKD--TYDENLHYPLLLVLT 278

GO:0005737 "cytoplasm" evidence=IEA

GO:0018025 "calmodulin-lysine N-methyltransferase activity" evidence=IEA

TAIR|locus:2078002 AT3G50850 "AT3G50850" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 43/133 (32%), Positives = 69/133 (51%)

Query:   117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQR 176
             P     + F    +D      ++ELGSG G+ G+  AAT  A  V ++D  P V++ ++ 
Sbjct:    71 PLNRTFSSFQSDGSDSSSPINIVELGSGTGIVGIAAAATLGA-NVTVTD-LPNVIENLKF 128

Query:   177 NVDANS---GAFGGTTVKSMTLHWNQ-DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIK 232
             N DAN+     FGG  V   +L W + DD   +    D+I+ASD  +    ++ L + ++
Sbjct:   129 NADANAQVVAKFGGK-VHVASLRWGEIDDVESLGQNVDLILASDVVYHVHLYEPLLKTLR 187

Query:   233 FLLKKVGPSEALF 245
             FLL + G SE +F
Sbjct:   188 FLLLE-GSSERVF 199

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

UNIPROTKB|F1PBM6 METTL21B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 44/166 (26%), Positives = 82/166 (49%)

Query:   124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG 183
             +F   + D FR K+VIELG+G G+ G++  A  +  +V I+D  P  ++ IQ NV AN  
Sbjct:    21 YFESQNVD-FRGKKVIELGAGTGIVGIL--AALQGGDVTITD-LPLALEQIQGNVQANVP 76

Query:   184 AFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEA 243
             A G   V++++  W  D   +  D +D+++ +D  + +     L   ++ L    GP   
Sbjct:    77 AGGRAQVRALS--WGIDQHVFPGD-YDLVLGADIVYLEPTFPLLLGTLQHLC---GPHGT 130

Query:   244 LFFSPKRGDS--LDKFLEEIEGNHLHFSII---ENYNAEIWK-RHQ 283
             ++ + K  +    + F + +   H    +    E+ N  I++ RH+
Sbjct:   131 IYLASKMREEHGTESFFQHLLPQHFQLELAQRDEDENVNIYRARHR 176

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|I3LNJ7 METTL21B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 44/166 (26%), Positives = 82/166 (49%)

Query:   124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG 183
             +F   + D FR K+VIELG+G G+ G++  A  +  +V I+D  P V++ IQ NV AN  
Sbjct:    66 YFESQNVD-FRGKKVIELGAGTGIVGIL--AALQGGDVTITD-LPLVLEQIQGNVQANVP 121

Query:   184 AFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEA 243
               G   V++++  W  D   +  D +D+++ +D  + +     L   ++ L    GP   
Sbjct:   122 TGGRAQVRALS--WGIDQHVFPGD-YDLVLGADIVYLEPTFPLLLGTLRHLC---GPHGT 175

Query:   244 LFFSPK--RGDSLDKFLEEIEGNHLHFSII---ENYNAEIWK-RHQ 283
             ++ + K  +    + F + +   H    +    E+ N  I++ RH+
Sbjct:   176 IYLASKMRKEHGTESFFQHLLPQHFQLELAQRDEDENVNIYRARHR 221

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3U2J5	CMKMT_MOUSE	2, ., 1, ., 1, ., 6, 0	0.3059	0.8932	0.8544	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_7000382 annotation not avaliable (308 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	2e-14
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	4e-11
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-06
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	3e-05
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	7e-05
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	2e-04
COG1867	380	COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyl	0.001
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	0.002
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	0.003

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 110 TGLVCH-WPSEDVLAFF----SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVIS 164
            G+  H W +  VL+ +         +      V+ELGSG GL G+ +A       V I+
Sbjct: 15  NGIGGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTIT 74

Query: 165 DGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD--TFDVIVASDCTFFKE 222
           D   + ++ +++N++ N      + V +  L W +D    + D    D+I+A+DC + ++
Sbjct: 75  D-LEEAIELMKKNIELN---GLSSKVTAKVLDWGEDLPDDVFDPHPVDLILAADCVYNED 130

Query: 223 FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN 264
               L + +  LL K   +  L    KR ++  +F + +E  
Sbjct: 131 SFPLLEKTLNDLLGK--ETVILVAYKKRREAEKRFFKLLEEF 170

Length = 170

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 15/145 (10%)

Query: 116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQ 175
           W    VLA +   H +  R KRV++LG+G GL   + AA   A EVV +D +P +   I+
Sbjct: 61  WAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVA-IAAARAGAAEVVAADIDPWLEQAIR 119

Query: 176 RNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLL 235
            N  AN  +   T       H +    P     FD+++A D  +         R+I +  
Sbjct: 120 LNAAANGVSILFT-------HADLIGSP---PAFDLLLAGDLFYNHTEA---DRLIPWKD 166

Query: 236 K-KVGPSEALFFSPKRGDSLDKFLE 259
           +     +  L   P R     K LE
Sbjct: 167 RLAEAGAAVLVGDPGRAYLPKKRLE 191

Length = 218

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 15/107 (14%)

Query: 136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL 195
            RV+++G G G   + +A       V   D +P++++  + N     G           +
Sbjct: 3   ARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP---------RI 53

Query: 196 HWNQDDFPYIVDT---FDVIVASDCTFFKEFHKDLARIIKFLLKKVG 239
            + Q D P  +D    FD +            + L  +   LLK  G
Sbjct: 54  TFVQGDAPDALDLLEGFDAVFIGGGGGDLL--ELLDALAS-LLKPGG 97

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH 196
           RV++LG G G   L +A+   A  V   D +P  ++  ++   A           +  + 
Sbjct: 1   RVLDLGCGTGALALALASGPGA-RVTGVDISPVALELARKAAAAL---------LADNVE 50

Query: 197 WNQDDF----PYIVDTFDVIVASD-CTFFKEFHKDLARIIKFLLKK 237
             + D     P   ++FDVI++        E         + LLK 
Sbjct: 51  VLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKP 96

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 127 LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG 186
           L         +V++LG GYG+ GLV+A  +   ++ + D N + V+  ++N+ AN    G
Sbjct: 151 LETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN----G 206

Query: 187 GTTVKSMTLHWNQDDFPYIVDTFDVIV 213
               +     W  + +  +   FD+I+
Sbjct: 207 VENTE----VWASNLYEPVEGKFDLII 229

Length = 300

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 127 LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN 181
           LSH       +V++LG GYG+ G  +A  +  LEV + D N + ++  + N+ AN
Sbjct: 24  LSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAAN 78

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVK-- 191
             KRV++  S  G+ G+  A  T  ++VV++D +P+ V+ I+ NV  NSG       K  
Sbjct: 52  LPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDA 111

Query: 192 SMTLHWNQDDFPYI-VDTF 209
           +  LH     F  I +D F
Sbjct: 112 NALLHELHRAFDVIDIDPF 130

Length = 380

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT 194
            KR+++LG+G G   + +A      EV+  D +P  +   + N + N        +  + 
Sbjct: 111 DKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG-------LVRVL 163

Query: 195 LHWNQDDFPYIVDTFDVIVA 214
           +    D F  +   FD+IV+
Sbjct: 164 VV-QSDLFEPLRGKFDLIVS 182

Length = 280

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN 181
           A + +  R+++LG+G G  GL++A  TE  ++V  +   +  +  QRNV  N
Sbjct: 40  APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN 91

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
KOG3201	201	consensus Uncharacterized conserved protein [Funct	100.0
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.95
COG3897	218	Predicted methyltransferase [General function pred	99.71
COG4123	248	Predicted O-methyltransferase [General function pr	99.68
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.67
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.65
PLN02244	340	tocopherol O-methyltransferase	99.64
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.63
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.63
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.62
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.6
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.6
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.59
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.59
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.59
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.59
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.59
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.58
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.56
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.56
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.55
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.55
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.55
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.55
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.55
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.55
PRK14967	223	putative methyltransferase; Provisional	99.54
PRK11207	197	tellurite resistance protein TehB; Provisional	99.54
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.54
PLN02336	475	phosphoethanolamine N-methyltransferase	99.54
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.53
PLN02490	340	MPBQ/MSBQ methyltransferase	99.53
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.53
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.52
PRK14968	188	putative methyltransferase; Provisional	99.52
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.52
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.51
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.51
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.51
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.5
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.5
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.5
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.5
PRK08317	241	hypothetical protein; Provisional	99.49
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.49
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.48
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.48
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.47
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.47
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.46
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.46
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.46
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.44
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.44
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.43
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.43
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.43
COG2890	280	HemK Methylase of polypeptide chain release factor	99.43
PRK12335	287	tellurite resistance protein TehB; Provisional	99.43
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.43
PRK04266	226	fibrillarin; Provisional	99.43
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.42
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.42
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.41
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.4
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.39
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.39
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.39
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.38
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.38
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.37
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.37
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.37
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.36
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.36
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.35
PRK07402	196	precorrin-6B methylase; Provisional	99.35
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.35
KOG1271	227	consensus Methyltransferases [General function pre	99.35
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.35
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.34
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.34
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.33
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.33
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.32
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.32
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.32
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.31
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.31
PRK06922	677	hypothetical protein; Provisional	99.3
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.3
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.3
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.3
PRK05785	226	hypothetical protein; Provisional	99.29
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.29
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.29
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.26
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.25
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.25
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.24
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.24
PLN02336	475	phosphoethanolamine N-methyltransferase	99.23
PLN02672	1082	methionine S-methyltransferase	99.23
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.23
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.22
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.19
PTZ00146	293	fibrillarin; Provisional	99.18
PRK06202	232	hypothetical protein; Provisional	99.18
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.17
PHA03411	279	putative methyltransferase; Provisional	99.16
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.16
PLN03075	296	nicotianamine synthase; Provisional	99.16
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.16
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.16
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.15
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.14
PRK04457	262	spermidine synthase; Provisional	99.14
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.14
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.14
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.14
TIGR00438	188	rrmJ cell division protein FtsJ.	99.13
COG4122	219	Predicted O-methyltransferase [General function pr	99.13
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.13
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.13
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.12
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.11
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.11
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.11
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.11
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.1
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.1
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.09
KOG4300	252	consensus Predicted methyltransferase [General fun	99.09
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.08
KOG2904	328	consensus Predicted methyltransferase [General fun	99.07
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.07
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.06
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.06
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.06
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.04
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.04
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.0
PLN02476	278	O-methyltransferase	99.0
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.99
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.98
KOG3010	261	consensus Methyltransferase [General function pred	98.98
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.98
PRK00811	283	spermidine synthase; Provisional	98.98
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.97
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.97
PRK01581	374	speE spermidine synthase; Validated	98.96
TIGR03438	301	probable methyltransferase. This model represents	98.96
PHA03412	241	putative methyltransferase; Provisional	98.95
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.93
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.91
KOG2361	264	consensus Predicted methyltransferase [General fun	98.91
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.89
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.88
PLN02366	308	spermidine synthase	98.87
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.87
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.87
KOG2899	288	consensus Predicted methyltransferase [General fun	98.87
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.87
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.86
PRK03612	521	spermidine synthase; Provisional	98.84
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.81
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.8
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.79
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.75
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.75
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.73
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.72
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.72
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.7
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.7
COG2520	341	Predicted methyltransferase [General function pred	98.69
PRK04148	134	hypothetical protein; Provisional	98.67
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.67
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.67
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.65
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.65
KOG2920	282	consensus Predicted methyltransferase [General fun	98.64
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.63
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.63
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.61
PLN02823	336	spermine synthase	98.55
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.54
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.53
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.48
KOG2940	325	consensus Predicted methyltransferase [General fun	98.44
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.42
PRK00536	262	speE spermidine synthase; Provisional	98.38
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.38
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.36
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.28
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.25
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.25
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.24
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.21
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.2
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.2
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.18
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.16
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.16
COG2521	287	Predicted archaeal methyltransferase [General func	98.12
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.12
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.12
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.1
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.1
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.1
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.1
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.09
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.09
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.06
COG4076	252	Predicted RNA methylase [General function predicti	98.04
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.04
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.02
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.01
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.98
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.98
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.96
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.95
PHA01634	156	hypothetical protein	97.92
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.89
KOG2497	262	consensus Predicted methyltransferase [General fun	97.87
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.87
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.86
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.86
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.86
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.85
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.83
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.81
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.77
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.72
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.71
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.71
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.68
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.63
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.63
PF13679	141	Methyltransf_32: Methyltransferase domain	97.63
PRK10742	250	putative methyltransferase; Provisional	97.57
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.56
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.48
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.43
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.35
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.27
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.13
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.13
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.09
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.05
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.01
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.96
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.89
KOG2730	263	consensus Methylase [General function prediction o	96.88
COG1568	354	Predicted methyltransferases [General function pre	96.86
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.71
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.65
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.61
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.56
KOG1227	351	consensus Putative methyltransferase [General func	96.51
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.45
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.34
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.33
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.24
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.14
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.12
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.04
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.98
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.89
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.71
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.66
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.63
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.63
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.58
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	95.54
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.51
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.5
KOG3115	249	consensus Methyltransferase-like protein [General	95.49
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.04
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.03
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.81
KOG1331	293	consensus Predicted methyltransferase [General fun	94.66
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	94.11
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.07
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.76
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.7
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	93.66
PRK10458	467	DNA cytosine methylase; Provisional	93.62
PRK11524	284	putative methyltransferase; Provisional	93.49
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.45
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	93.36
COG1565	370	Uncharacterized conserved protein [Function unknow	93.36
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	93.12
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	93.07
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.92
PRK13699	227	putative methylase; Provisional	92.92
COG2961	279	ComJ Protein involved in catabolism of external DN	92.91
KOG4058	199	consensus Uncharacterized conserved protein [Funct	92.81
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.76
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	92.55
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.38
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	92.22
KOG2912	419	consensus Predicted DNA methylase [Function unknow	92.21
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	91.95
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	91.57
COG0286	489	HsdM Type I restriction-modification system methyl	91.46
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	91.36
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	91.29
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	91.24
PF14904	100	FAM86: Family of unknown function	91.14
COG4798	238	Predicted methyltransferase [General function pred	91.14
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	90.61
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	90.56
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.49
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.48
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	90.45
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	90.38
PRK13699	227	putative methylase; Provisional	90.38
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.0
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	89.82
PRK12548	289	shikimate 5-dehydrogenase; Provisional	89.73
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	89.35
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	89.26
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	89.15
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	89.1
PLN02668	386	indole-3-acetate carboxyl methyltransferase	88.8
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	88.65
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	88.43
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	88.42
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	88.26
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	87.9
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	87.23
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	87.22
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	87.14
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	87.08
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	87.03
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	87.02
PRK07523	255	gluconate 5-dehydrogenase; Provisional	86.82
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	86.74
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	86.57
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	86.03
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	85.24
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	85.22
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	85.07
PRK06124	256	gluconate 5-dehydrogenase; Provisional	84.89
PLN03209	576	translocon at the inner envelope of chloroplast su	84.86
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	84.81
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	84.56
PLN02740	381	Alcohol dehydrogenase-like	84.54
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	84.53
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	84.25
PRK07904	253	short chain dehydrogenase; Provisional	84.15
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	84.12
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	83.78
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	83.69
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	83.5
KOG3924	419	consensus Putative protein methyltransferase invol	83.49
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	83.28
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	83.19
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	82.99
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	82.39
COG1255	129	Uncharacterized protein conserved in archaea [Func	82.23
COG4301	321	Uncharacterized conserved protein [Function unknow	82.21
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	82.02
PRK11524	284	putative methyltransferase; Provisional	81.88
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	81.8
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	81.42
PLN02827	378	Alcohol dehydrogenase-like	80.84
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	80.83
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	80.56
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	80.45
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	80.34

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.6e-42  Score=276.37  Aligned_cols=198  Identities=41%  Similarity=0.721  Sum_probs=178.3

Q ss_pred             ccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC
Q 021691          106 NIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA  184 (309)
Q Consensus       106 ~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~  184 (309)
                      ++||||++|+||+++.||.+++..+..++|++|||||.| +|+.|+++|...+...|..||++++.++++++-+-.|...
T Consensus         1 gfdntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s   80 (201)
T KOG3201|consen    1 GFDNTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS   80 (201)
T ss_pred             CcCCCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc
Confidence            379999999999999999999999999999999999999 7999999999989999999999999999999988888442


Q ss_pred             CCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691          185 FGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN  264 (309)
Q Consensus       185 ~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~  264 (309)
                       +..++.+..++|......+...+||+|+|+||+|+.+.+++|+++++++|+|.|  .+++++|+|++++++|.+.+...
T Consensus        81 -~~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g--~Al~fsPRRg~sL~kF~de~~~~  157 (201)
T KOG3201|consen   81 -SLTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSG--RALLFSPRRGQSLQKFLDEVGTV  157 (201)
T ss_pred             -ccceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCccc--ceeEecCcccchHHHHHHHHHhc
Confidence             234454555555444444456799999999999999999999999999999999  69999999999999999999999


Q ss_pred             CCeEEEEeccCchhhhhhhccccCCCCCCCCCCCCCcceEEEec
Q 021691          265 HLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRIT  308 (309)
Q Consensus       265 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yp~l~~~~  308 (309)
                      ||.+...++|+..+|++|..+..++.  +.|++++|||+|++||
T Consensus       158 gf~v~l~enyde~iwqrh~~Lkk~~e--~~ydenlhypllLqLt  199 (201)
T KOG3201|consen  158 GFTVCLEENYDEAIWQRHGRLKKGDE--PNYDENLHYPLLLQLT  199 (201)
T ss_pred             eeEEEecccHhHHHHHHHHHHhcCCC--ccccccccchhhhhhh
Confidence            99999999999999999999999875  7799999999999987

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.95  E-value=1.2e-27  Score=201.88  Aligned_cols=153  Identities=36%  Similarity=0.557  Sum_probs=105.1

Q ss_pred             cCCCCceeecccHHHHHHHHhhC------cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh
Q 021691          107 IDNTGLVCHWPSEDVLAFFSLSH------ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA  180 (309)
Q Consensus       107 ~~~tG~~~~W~sa~~La~~l~~~------~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~  180 (309)
                      .+.||.. +||++.+|++|+..+      ...+++++|||||||+|++|+.+|+..++.+|++||.++ +++.++.|++.
T Consensus        13 ~~~~G~~-vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~   90 (173)
T PF10294_consen   13 GDGTGGK-VWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL   90 (173)
T ss_dssp             -----------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred             ccCCcEE-EechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh
Confidence            3588987 999999999999994      567899999999999999999998876788999999998 99999999999


Q ss_pred             ccCCCCCCceEEEEeeCCCCCCC--CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH
Q 021691          181 NSGAFGGTTVKSMTLHWNQDDFP--YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL  258 (309)
Q Consensus       181 n~~~~~~~~v~~~~l~w~~~~~~--~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~  258 (309)
                      |+. ....++.+..++|++....  ....+||+|+++||+|+.+.++.|++++.++++++|.  ++++.+.|..+...|+
T Consensus        91 N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~--vl~~~~~R~~~~~~F~  167 (173)
T PF10294_consen   91 NGS-LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK--VLLAYKRRRKSEQEFF  167 (173)
T ss_dssp             T---------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT--EEEEEE-S-TGGCHHH
T ss_pred             ccc-cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE--EEEEeCEecHHHHHHH
Confidence            983 2246889999999974311  1235899999999999999999999999999999994  8888888888888999


Q ss_pred             HHHHhC
Q 021691          259 EEIEGN  264 (309)
Q Consensus       259 ~~~~~~  264 (309)
                      +.++++
T Consensus       168 ~~~~k~  173 (173)
T PF10294_consen  168 DRLKKH  173 (173)
T ss_dssp             HHH---
T ss_pred             HHhhhC
Confidence            998763

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.71  E-value=4e-17  Score=135.87  Aligned_cols=135  Identities=27%  Similarity=0.306  Sum_probs=110.3

Q ss_pred             eecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          114 CHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       114 ~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      +.|.+++.||+|+..+++.++||+|||+|+|+|+++++.|+ .|+..|+++|+.|..+++++.|++.|+..     +.+.
T Consensus        59 ~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~lNa~angv~-----i~~~  132 (218)
T COG3897          59 FAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIRLNAAANGVS-----ILFT  132 (218)
T ss_pred             HHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHH-hhhHHHHhcCCChHHHHHhhcchhhccce-----eEEe
Confidence            48999999999999999999999999999999999999665 58889999999999999999999999863     4443


Q ss_pred             EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH
Q 021691          194 TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI  261 (309)
Q Consensus       194 ~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~  261 (309)
                      ..+-.     .....||+|+++|++|.......++....++...|-  .+++.++.|+.-..+-++.+
T Consensus       133 ~~d~~-----g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~--~vlvgdp~R~~lpk~~l~~~  193 (218)
T COG3897         133 HADLI-----GSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGA--AVLVGDPGRAYLPKKRLEFL  193 (218)
T ss_pred             ecccc-----CCCcceeEEEeeceecCchHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCchhhhhhh
Confidence            33222     134679999999999999999999996666665555  67788999876554433333

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.68  E-value=7.4e-16  Score=135.08  Aligned_cols=145  Identities=25%  Similarity=0.329  Sum_probs=117.1

Q ss_pred             cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      -+..|+.|+.-.    ..++|||||||+|++++++|++.+..+++++|+++++.+.|++|++.|++.   .++++...|.
T Consensus        32 DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~---~ri~v~~~Di  104 (248)
T COG4123          32 DAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE---ERIQVIEADI  104 (248)
T ss_pred             HHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch---hceeEehhhH
Confidence            357788887432    378999999999999999999977789999999999999999999999984   5777777766


Q ss_pred             CCCCCCCCCCCccEEEEcCCCCCcc------------------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHH
Q 021691          198 NQDDFPYIVDTFDVIVASDCTFFKE------------------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLE  259 (309)
Q Consensus       198 ~~~~~~~~~~~fDvIi~~d~ly~~~------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~  259 (309)
                      .+........+||+|+|+.++|...                  .++++++...++||++|  .+.+.  .|++.+.++.+
T Consensus       105 ~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G--~l~~V--~r~erl~ei~~  180 (248)
T COG4123         105 KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG--RLAFV--HRPERLAEIIE  180 (248)
T ss_pred             HHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC--EEEEE--ecHHHHHHHHH
Confidence            5544444445799999988877632                  37889999999999999  33332  36778889999


Q ss_pred             HHHhCCCeEEEEec
Q 021691          260 EIEGNHLHFSIIEN  273 (309)
Q Consensus       260 ~~~~~G~~~~~~~~  273 (309)
                      .+++.+|....+..
T Consensus       181 ~l~~~~~~~k~i~~  194 (248)
T COG4123         181 LLKSYNLEPKRIQF  194 (248)
T ss_pred             HHHhcCCCceEEEE
Confidence            99999998877654

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.67  E-value=1.8e-15  Score=127.25  Aligned_cols=119  Identities=22%  Similarity=0.271  Sum_probs=93.7

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      +++..|++++...    .+++|||+|||+|.+++.+++..+..+|+++|+++.+++.+++|++.|+..    .+.+...|
T Consensus        18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~----~v~~~~~d   89 (170)
T PF05175_consen   18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE----NVEVVQSD   89 (170)
T ss_dssp             HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT----TEEEEESS
T ss_pred             HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc----cccccccc
Confidence            4567788888765    578999999999999999999877778999999999999999999999984    26776666


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      +-+..   ...+||+|+++.+++...     ....+++...++|+++|  .+++...
T Consensus        90 ~~~~~---~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G--~l~lv~~  141 (170)
T PF05175_consen   90 LFEAL---PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG--RLFLVIN  141 (170)
T ss_dssp             TTTTC---CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEE--EEEEEEE
T ss_pred             ccccc---cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCC--EEEEEee
Confidence            54322   257899999998877654     36889999999999999  5544433

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.65  E-value=1.2e-15  Score=118.78  Aligned_cols=106  Identities=20%  Similarity=0.282  Sum_probs=84.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      +|.+|||||||+|..++.+++..++.+|+++|.++++++.+++++...+.   ..++++...++ . .......+||+|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~i~~~~~d~-~-~~~~~~~~~D~v~   75 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL---SDRITFVQGDA-E-FDPDFLEPFDLVI   75 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT---TTTEEEEESCC-H-GGTTTSSCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC---CCCeEEEECcc-c-cCcccCCCCCEEE
Confidence            57899999999999999999976788999999999999999999966655   35788888777 1 1122345799999


Q ss_pred             EcC-CCCC---cccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          214 ASD-CTFF---KEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       214 ~~d-~ly~---~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      +.. +.++   .+....+++.++++|+|||  .+++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG--~lvi~  110 (112)
T PF12847_consen   76 CSGFTLHFLLPLDERRRVLERIRRLLKPGG--RLVIN  110 (112)
T ss_dssp             ECSGSGGGCCHHHHHHHHHHHHHHHEEEEE--EEEEE
T ss_pred             ECCCccccccchhHHHHHHHHHHHhcCCCc--EEEEE
Confidence            988 3321   2567889999999999999  55543

...

>PLN02244 tocopherol O-methyltransferase

Probab=99.64  E-value=1.3e-14  Score=135.11  Aligned_cols=149  Identities=15%  Similarity=0.114  Sum_probs=113.1

Q ss_pred             HHHHHHHhhCcCc-----CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          120 DVLAFFSLSHADM-----FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       120 ~~La~~l~~~~~~-----~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      ..+.+.+.....+     .++++|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++..++..   .++.+..
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~---~~v~~~~  174 (340)
T PLN02244         99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLS---DKVSFQV  174 (340)
T ss_pred             HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEE
Confidence            3344445444333     578899999999999999998876 569999999999999999998887762   3566666


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----C------------------
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----G------------------  251 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----~------------------  251 (309)
                      .|..+  .+..+++||+|++..++++..+...+++.+.++|+|||  .+++.+...     .                  
T Consensus       175 ~D~~~--~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG--~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~  250 (340)
T PLN02244        175 ADALN--QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGG--RIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA  250 (340)
T ss_pred             cCccc--CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCc--EEEEEEecccccccccccCCHHHHHHHHHHHhh
Confidence            55433  34456799999999999999899999999999999999  555543110     0                  


Q ss_pred             ------chHHHHHHHHHhCCCeEEEEeccCc
Q 021691          252 ------DSLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       252 ------~~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                            .+.+++.+.++++||....++.+..
T Consensus       251 ~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~  281 (340)
T PLN02244        251 YYLPAWCSTSDYVKLAESLGLQDIKTEDWSE  281 (340)
T ss_pred             ccCCCCCCHHHHHHHHHHCCCCeeEeeeCcH
Confidence                  1345777889999999877776554

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=7.4e-15  Score=132.05  Aligned_cols=147  Identities=24%  Similarity=0.201  Sum_probs=106.5

Q ss_pred             cCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691          107 IDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG  186 (309)
Q Consensus       107 ~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~  186 (309)
                      || ||..   |....-.+++.+..  .+|++|||+|||+|.++++.++ +|+.+|+|+|++|.+++.++.|++.|+... 
T Consensus       141 FG-TG~H---pTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-  212 (300)
T COG2264         141 FG-TGTH---PTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVEL-  212 (300)
T ss_pred             cC-CCCC---hhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCch-
Confidence            44 5654   55555555555433  3899999999999999999555 789999999999999999999999999842 


Q ss_pred             CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC
Q 021691          187 GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL  266 (309)
Q Consensus       187 ~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~  266 (309)
                        .+.+...   .........+||+|+++= +  .+.+..|...+.++++|+|  .++++.-... ..+.+.+.+.+.||
T Consensus       213 --~~~~~~~---~~~~~~~~~~~DvIVANI-L--A~vl~~La~~~~~~lkpgg--~lIlSGIl~~-q~~~V~~a~~~~gf  281 (300)
T COG2264         213 --LVQAKGF---LLLEVPENGPFDVIVANI-L--AEVLVELAPDIKRLLKPGG--RLILSGILED-QAESVAEAYEQAGF  281 (300)
T ss_pred             --hhhcccc---cchhhcccCcccEEEehh-h--HHHHHHHHHHHHHHcCCCc--eEEEEeehHh-HHHHHHHHHHhCCC
Confidence              1111111   111111235899999953 2  4456788999999999999  5666554443 36788899999999


Q ss_pred             eEEEEe
Q 021691          267 HFSIIE  272 (309)
Q Consensus       267 ~~~~~~  272 (309)
                      .+..+.
T Consensus       282 ~v~~~~  287 (300)
T COG2264         282 EVVEVL  287 (300)
T ss_pred             eEeEEE
Confidence            986654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.63  E-value=3.8e-15  Score=134.96  Aligned_cols=143  Identities=22%  Similarity=0.242  Sum_probs=101.4

Q ss_pred             ccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691          106 NIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF  185 (309)
Q Consensus       106 ~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~  185 (309)
                      .|| ||.+   |....-.+++...  ..+|++|||+|||+|.+++++++ +|+.+|+++|++|.+++.+++|+..|++. 
T Consensus       139 AFG-TG~H---~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~-  210 (295)
T PF06325_consen  139 AFG-TGHH---PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVE-  210 (295)
T ss_dssp             SS--SSHC---HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-T-
T ss_pred             ccc-CCCC---HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCC-
Confidence            344 4554   6666666666554  45789999999999999999655 68899999999999999999999999985 


Q ss_pred             CCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCC
Q 021691          186 GGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH  265 (309)
Q Consensus       186 ~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G  265 (309)
                        .++.+.    .  .......+||+|+++-.   ...+..++..+.++|+++|  .++++.-.. ...+.+.+.+++ |
T Consensus       211 --~~~~v~----~--~~~~~~~~~dlvvANI~---~~vL~~l~~~~~~~l~~~G--~lIlSGIl~-~~~~~v~~a~~~-g  275 (295)
T PF06325_consen  211 --DRIEVS----L--SEDLVEGKFDLVVANIL---ADVLLELAPDIASLLKPGG--YLILSGILE-EQEDEVIEAYKQ-G  275 (295)
T ss_dssp             --TCEEES----C--TSCTCCS-EEEEEEES----HHHHHHHHHHCHHHEEEEE--EEEEEEEEG-GGHHHHHHHHHT-T
T ss_pred             --eeEEEE----E--ecccccccCCEEEECCC---HHHHHHHHHHHHHhhCCCC--EEEEccccH-HHHHHHHHHHHC-C
Confidence              344332    1  11223489999999622   3455678888999999999  555554444 455778888876 9


Q ss_pred             CeEEEE
Q 021691          266 LHFSII  271 (309)
Q Consensus       266 ~~~~~~  271 (309)
                      |.+...
T Consensus       276 ~~~~~~  281 (295)
T PF06325_consen  276 FELVEE  281 (295)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            987543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.62  E-value=2e-14  Score=121.92  Aligned_cols=130  Identities=16%  Similarity=0.261  Sum_probs=98.4

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++++|||+|||+|..++.+++..  .+|+++|.++++++.+++|+..++.     .+.+...|+...    ..++||+
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~----~~~~fD~   85 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNV-----GLDVVMTDLFKG----VRGKFDV   85 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEcccccc----cCCcccE
Confidence            3456799999999999999988763  3899999999999999999998865     345555554332    2358999


Q ss_pred             EEEcCCCCCccc---------------------HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691          212 IVASDCTFFKEF---------------------HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       212 Ii~~d~ly~~~~---------------------~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      |+++.+++....                     +..+++.+.++|+++|  .+++..... .....+.+.+++.||..+.
T Consensus        86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG--~~~~~~~~~-~~~~~~~~~l~~~gf~~~~  162 (179)
T TIGR00537        86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGG--RVQLIQSSL-NGEPDTFDKLDERGFRYEI  162 (179)
T ss_pred             EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCC--EEEEEEecc-CChHHHHHHHHhCCCeEEE
Confidence            999877654321                     4678999999999999  555555433 2356788899999999988


Q ss_pred             EeccC
Q 021691          271 IENYN  275 (309)
Q Consensus       271 ~~~~~  275 (309)
                      +..+.
T Consensus       163 ~~~~~  167 (179)
T TIGR00537       163 VAERG  167 (179)
T ss_pred             EEEee
Confidence            76543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.60  E-value=1.7e-14  Score=118.99  Aligned_cols=109  Identities=16%  Similarity=0.248  Sum_probs=91.0

Q ss_pred             CCCeEEEeCCCCChhhHHHH-HhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIA-ATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la-~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ++.+|||+|||+|..+..++ +..++.+|+++|.+++|++.++++++.++..    ++++...|+.+.+.. ..++||+|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~----ni~~~~~d~~~l~~~-~~~~~D~I   77 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD----NIEFIQGDIEDLPQE-LEEKFDII   77 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST----TEEEEESBTTCGCGC-SSTTEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc----ccceEEeehhccccc-cCCCeeEE
Confidence            57899999999999999999 4566789999999999999999999988873    688888887763211 12789999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      +++.++++..+...+++.+.++|+++|  .+++....
T Consensus        78 ~~~~~l~~~~~~~~~l~~~~~~lk~~G--~~i~~~~~  112 (152)
T PF13847_consen   78 ISNGVLHHFPDPEKVLKNIIRLLKPGG--ILIISDPN  112 (152)
T ss_dssp             EEESTGGGTSHHHHHHHHHHHHEEEEE--EEEEEEEE
T ss_pred             EEcCchhhccCHHHHHHHHHHHcCCCc--EEEEEECC
Confidence            999999999999999999999999999  55555544

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.60  E-value=6e-14  Score=119.54  Aligned_cols=123  Identities=20%  Similarity=0.233  Sum_probs=97.2

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++++|||+|||+|..++.+++..++.+|+++|.++++++.++++++.++..    ++++...+..+.  .. .++||+|+
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~----~i~~~~~d~~~~--~~-~~~fDlV~  117 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK----NVTVVHGRAEEF--GQ-EEKFDVVT  117 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC----CEEEEeccHhhC--CC-CCCccEEE
Confidence            488999999999999999988777889999999999999999999999873    366666654432  22 56899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEE
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      +..    ...++.+++.+.++|+|||  .+++...  ......+.+..+..|+.+..+
T Consensus       118 ~~~----~~~~~~~l~~~~~~LkpGG--~lv~~~~--~~~~~~l~~~~~~~~~~~~~~  167 (187)
T PRK00107        118 SRA----VASLSDLVELCLPLLKPGG--RFLALKG--RDPEEEIAELPKALGGKVEEV  167 (187)
T ss_pred             Ecc----ccCHHHHHHHHHHhcCCCe--EEEEEeC--CChHHHHHHHHHhcCceEeee
Confidence            964    2457889999999999999  5555443  345567788888889887544

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.59  E-value=8.3e-14  Score=125.10  Aligned_cols=113  Identities=12%  Similarity=0.038  Sum_probs=86.2

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ...++.+|||+|||+|..+..+++..+ ..+|+++|.+++|++.++++....... ...++.+...+..  ..+..+++|
T Consensus        70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~--~lp~~~~sf  146 (261)
T PLN02233         70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDAT--DLPFDDCYF  146 (261)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccc--cCCCCCCCE
Confidence            345688999999999999998888754 469999999999999998775421110 0124555555433  334556789


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      |+|+++.++++..+...+++++.++|+|||  .+++...
T Consensus       147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG--~l~i~d~  183 (261)
T PLN02233        147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGS--RVSILDF  183 (261)
T ss_pred             eEEEEecccccCCCHHHHHHHHHHHcCcCc--EEEEEEC
Confidence            999999999999999999999999999999  5555543

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.59  E-value=2.1e-14  Score=125.82  Aligned_cols=128  Identities=16%  Similarity=0.190  Sum_probs=102.2

Q ss_pred             CCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691          109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGT  188 (309)
Q Consensus       109 ~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~  188 (309)
                      +.|...+|.-..+-.  +    ...+|.+|||+|||||-.++.+++..+.++|+++|+|+.||+.+++.+..-+..    
T Consensus        32 S~g~~~~Wr~~~i~~--~----~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~----  101 (238)
T COG2226          32 SFGLHRLWRRALISL--L----GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ----  101 (238)
T ss_pred             cCcchHHHHHHHHHh--h----CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc----
Confidence            456666888554432  2    222799999999999999999999988889999999999999999998876552    


Q ss_pred             ceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          189 TVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       189 ~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      .++....|  .+..|+++++||+|.++-.+.+..+++..+++++|+|||||  ++++....+
T Consensus       102 ~i~fv~~d--Ae~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG--~~~vle~~~  159 (238)
T COG2226         102 NVEFVVGD--AENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGG--RLLVLEFSK  159 (238)
T ss_pred             ceEEEEec--hhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCe--EEEEEEcCC
Confidence            24444443  45567888999999999999999999999999999999999  555555443

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.59  E-value=4e-15  Score=128.56  Aligned_cols=107  Identities=16%  Similarity=0.160  Sum_probs=86.1

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|++|||+|||.|.++..+|+.  +++|+++|.++++|+.++.....+++...     .....-  ++.....++||+|
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~-----y~~~~~--edl~~~~~~FDvV  128 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNID-----YRQATV--EDLASAGGQFDVV  128 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccccc-----chhhhH--HHHHhcCCCccEE
Confidence            68999999999999999999886  58999999999999999999999887411     111100  1111223799999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      +|.+++.|.++.+.+++.+.+++||+|  .+++++..|
T Consensus       129 ~cmEVlEHv~dp~~~~~~c~~lvkP~G--~lf~STinr  164 (243)
T COG2227         129 TCMEVLEHVPDPESFLRACAKLVKPGG--ILFLSTINR  164 (243)
T ss_pred             EEhhHHHccCCHHHHHHHHHHHcCCCc--EEEEecccc
Confidence            999999999999999999999999999  555555544

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.59  E-value=9e-14  Score=122.43  Aligned_cols=109  Identities=11%  Similarity=0.070  Sum_probs=86.9

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      .+.++++|||+|||+|..+..+++..+ ..+|+++|.++.+++.+++++..++.    .++.+...+...  .+...++|
T Consensus        42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~--~~~~~~~f  115 (231)
T TIGR02752        42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL----HNVELVHGNAME--LPFDDNSF  115 (231)
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEechhc--CCCCCCCc
Confidence            445688999999999999999888753 56999999999999999999877665    245554444332  23345789


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |+|+++.++++..+...+++.+.++|+|||  .+++..
T Consensus       116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG--~l~~~~  151 (231)
T TIGR02752       116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGG--KVVCLE  151 (231)
T ss_pred             cEEEEecccccCCCHHHHHHHHHHHcCcCe--EEEEEE
Confidence            999999888888889999999999999999  555544

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.59  E-value=2.3e-14  Score=131.84  Aligned_cols=132  Identities=13%  Similarity=0.155  Sum_probs=100.8

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|.+|||+|||+|.++..+++.  +.+|+++|.++++++.++.+...++..   .++.+...+..  +.+...++||+|
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~---~~i~~~~~dae--~l~~~~~~FD~V  202 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVT---STIEYLCTTAE--KLADEGRKFDAV  202 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcc---cceeEEecCHH--HhhhccCCCCEE
Confidence            57789999999999999988874  569999999999999999887665431   23444443322  223335689999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------------CchHHHHHHHHHhC
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----------------------------GDSLDKFLEEIEGN  264 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------------~~~~~~f~~~~~~~  264 (309)
                      ++.++++|..+...+++.+.++|+|||  .+++.+..+                            ..+.+++.+.++++
T Consensus       203 i~~~vLeHv~d~~~~L~~l~r~LkPGG--~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a  280 (322)
T PLN02396        203 LSLEVIEHVANPAEFCKSLSALTIPNG--ATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA  280 (322)
T ss_pred             EEhhHHHhcCCHHHHHHHHHHHcCCCc--EEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence            999999999999999999999999999  555543211                            12456788889999


Q ss_pred             CCeEEEEec
Q 021691          265 HLHFSIIEN  273 (309)
Q Consensus       265 G~~~~~~~~  273 (309)
                      ||.+..+..
T Consensus       281 Gf~i~~~~G  289 (322)
T PLN02396        281 SVDVKEMAG  289 (322)
T ss_pred             CCeEEEEee
Confidence            998876543

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.58  E-value=2.8e-14  Score=125.19  Aligned_cols=158  Identities=28%  Similarity=0.392  Sum_probs=116.1

Q ss_pred             CceeecccHHHHHHHHhhCcC------cCC-----CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHH
Q 021691          111 GLVCHWPSEDVLAFFSLSHAD------MFR-----SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVD  179 (309)
Q Consensus       111 G~~~~W~sa~~La~~l~~~~~------~~~-----g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~  179 (309)
                      +.. +|+++..++.++..+..      -..     .++|||||+|||++|+.+|..+ ..+|+.+| .+..+..++.|..
T Consensus        53 ~~~-~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD-~~~~~~~L~~~~~  129 (248)
T KOG2793|consen   53 SAY-LWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLL-GAEVVLTD-LPKVVENLKFNRD  129 (248)
T ss_pred             eeE-EeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHh-cceeccCC-chhhHHHHHHhhh
Confidence            344 89999999999887544      122     4469999999999999977754 56999999 5778888888877


Q ss_pred             hccCCCC--CCceEEEEeeCCCCCCC-CCCCC-ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCch--
Q 021691          180 ANSGAFG--GTTVKSMTLHWNQDDFP-YIVDT-FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDS--  253 (309)
Q Consensus       180 ~n~~~~~--~~~v~~~~l~w~~~~~~-~~~~~-fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~--  253 (309)
                      .|+....  ...+.+..++|++.... ...+. ||+|+++||+|.++..+.++.+++.+|..++  .+++..+.|...  
T Consensus       130 ~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~--~i~l~~~lr~~~~~  207 (248)
T KOG2793|consen  130 KNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDG--TIFLAYPLRRDAAW  207 (248)
T ss_pred             hhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCC--eEEEEEecccchHH
Confidence            7765432  23789999999987532 22334 9999999999999999999999999999998  666667766532  


Q ss_pred             -HHHHHHHHHhCCCeEEEEec
Q 021691          254 -LDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       254 -~~~f~~~~~~~G~~~~~~~~  273 (309)
                       ...++.......+++.....
T Consensus       208 ~~~~~~~~~~~~~~~v~~~~~  228 (248)
T KOG2793|consen  208 EIEVLLFKKDLKIFDVVQESF  228 (248)
T ss_pred             HHHHHHhhhhhccceeeeEec
Confidence             22222233334556554443

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.56  E-value=1e-13  Score=117.72  Aligned_cols=126  Identities=20%  Similarity=0.214  Sum_probs=92.9

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|++|||+|||+|..++.+|...+..+|+++|.++.|++.++++++.++..    ++++...+..+.   ...++||+|
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~----~i~~i~~d~~~~---~~~~~fD~I  113 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN----NVEIVNGRAEDF---QHEEQFDVI  113 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC----CeEEEecchhhc---cccCCccEE
Confidence            3588999999999999999888777789999999999999999999888762    467766665432   124689999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHH---HHHHHHhCCCeEEEEec
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDK---FLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~---f~~~~~~~G~~~~~~~~  273 (309)
                      ++.. +   ..++.+++.+.++|++||  .+++..  +.....+   ..+.+...|+.......
T Consensus       114 ~s~~-~---~~~~~~~~~~~~~LkpgG--~lvi~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~  169 (181)
T TIGR00138       114 TSRA-L---ASLNVLLELTLNLLKVGG--YFLAYK--GKKYLDEIEEAKRKCQVLGVEPLEVPP  169 (181)
T ss_pred             Eehh-h---hCHHHHHHHHHHhcCCCC--EEEEEc--CCCcHHHHHHHHHhhhhcCceEeeccc
Confidence            9854 2   356778899999999999  444443  3333333   33445557887655443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.56  E-value=1.2e-13  Score=121.16  Aligned_cols=133  Identities=18%  Similarity=0.185  Sum_probs=105.6

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      ++|||+|||+|..+..+++.++..+|+++|.++++++.+++++...++.   .++.+...|.....  . .++||+|++.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~---~~i~~~~~d~~~~~--~-~~~fD~I~~~   74 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ---GRIRIFYRDSAKDP--F-PDTYDLVFGF   74 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC---cceEEEecccccCC--C-CCCCCEeehH
Confidence            5799999999999999998877779999999999999999999887763   45666666554332  1 3579999999


Q ss_pred             CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------CchHHHHHHHHHhCCCeEEEEeccCc
Q 021691          216 DCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------------GDSLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       216 d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------~~~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      .++++..+...+++.+.++|+|+|  .+++.....              ..+..++.+.+.++||.+........
T Consensus        75 ~~l~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~  147 (224)
T smart00828       75 EVIHHIKDKMDLFSNISRHLKDGG--HLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASL  147 (224)
T ss_pred             HHHHhCCCHHHHHHHHHHHcCCCC--EEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcH
Confidence            999998889999999999999999  555544211              12456788899999999877665443

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.55  E-value=1.3e-13  Score=123.14  Aligned_cols=149  Identities=17%  Similarity=0.182  Sum_probs=117.4

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      ++...-.+.+.....+.+|++|||||||.|.+++.+|+.+ +.+|++++.|++..+.+++.+...|+.   .++++...|
T Consensus        55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~---~~v~v~l~d  130 (283)
T COG2230          55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLE---DNVEVRLQD  130 (283)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCC---cccEEEecc
Confidence            4444456667777889999999999999999999999988 569999999999999999999999984   578888887


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecCC---------------------ch
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKRG---------------------DS  253 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r~---------------------~~  253 (309)
                      |.+..     ++||-|++..++.+...  .+.+++.++++|+++|  .+++.+...+                     .+
T Consensus       131 ~rd~~-----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G--~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs  203 (283)
T COG2230         131 YRDFE-----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGG--RMLLHSITGPDQEFRRFPDFIDKYIFPGGELPS  203 (283)
T ss_pred             ccccc-----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCc--eEEEEEecCCCcccccchHHHHHhCCCCCcCCC
Confidence            76443     45999999999988655  9999999999999999  4554442211                     12


Q ss_pred             HHHHHHHHHhCCCeEEEEeccCc
Q 021691          254 LDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       254 ~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      .....+...+.|+.+...+....
T Consensus       204 ~~~i~~~~~~~~~~v~~~~~~~~  226 (283)
T COG2230         204 ISEILELASEAGFVVLDVESLRP  226 (283)
T ss_pred             HHHHHHHHHhcCcEEehHhhhcH
Confidence            34455667788888877665443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.55  E-value=2.8e-13  Score=115.59  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=97.9

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      +.......++.+|||+|||+|.+++.+++..+..+|+++|.++.+++.+++|+..++..    ++++...+..    ...
T Consensus        23 ~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~----~i~~~~~d~~----~~~   94 (187)
T PRK08287         23 ALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG----NIDIIPGEAP----IEL   94 (187)
T ss_pred             HHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CeEEEecCch----hhc
Confidence            33333455788999999999999999998877789999999999999999999988762    3554443321    112


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      ..+||+|+++...   ..+..+++.+.++|+++|  .+++ .........++.+.+++.||....+.
T Consensus        95 ~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG--~lv~-~~~~~~~~~~~~~~l~~~g~~~~~~~  155 (187)
T PRK08287         95 PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGG--RLVL-TFILLENLHSALAHLEKCGVSELDCV  155 (187)
T ss_pred             CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCe--EEEE-EEecHhhHHHHHHHHHHCCCCcceEE
Confidence            3579999996543   346778999999999999  4444 33334456778889999998654433

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.55  E-value=2.3e-13  Score=125.65  Aligned_cols=149  Identities=17%  Similarity=0.164  Sum_probs=106.1

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      -|++...... +..+.....|++|||+|||+|..+..++.. ++..|+++|.++.++...+......+.   ..++.+..
T Consensus       104 ew~s~~k~~~-l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~~~~~---~~~i~~~~  178 (322)
T PRK15068        104 EWRSDWKWDR-VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRKLLGN---DQRAHLLP  178 (322)
T ss_pred             eehHHhHHHH-HHHhhCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHhcCC---CCCeEEEe
Confidence            4776665443 333334567899999999999999988876 566899999999988765443322221   13466665


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee------------c-C---------Cc
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP------------K-R---------GD  252 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~------------~-r---------~~  252 (309)
                      .+....  +. .++||+|++..++||..+...+++.+++.|+|||  .+++.+.            . +         -.
T Consensus       179 ~d~e~l--p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG--~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lp  253 (322)
T PRK15068        179 LGIEQL--PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGG--ELVLETLVIDGDENTVLVPGDRYAKMRNVYFIP  253 (322)
T ss_pred             CCHHHC--CC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCc--EEEEEEEEecCCCccccCchhHHhcCccceeCC
Confidence            554332  23 5789999999999999999999999999999999  4544321            0 0         11


Q ss_pred             hHHHHHHHHHhCCCeEEEEec
Q 021691          253 SLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       253 ~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      +...+.+.++++||....+..
T Consensus       254 s~~~l~~~L~~aGF~~i~~~~  274 (322)
T PRK15068        254 SVPALKNWLERAGFKDVRIVD  274 (322)
T ss_pred             CHHHHHHHHHHcCCceEEEEe
Confidence            456788899999999766554

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.55  E-value=2.1e-13  Score=122.58  Aligned_cols=143  Identities=16%  Similarity=0.110  Sum_probs=104.8

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..-...+.....+.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++....      .++.+...+...
T Consensus        38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~------~~i~~~~~D~~~  110 (263)
T PTZ00098         38 IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDK------NKIEFEANDILK  110 (263)
T ss_pred             hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcC------CceEEEECCccc
Confidence            3334445555566788999999999999998888765 459999999999999999875431      245555555432


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEeecC--------------------CchHHHH
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSPKR--------------------GDSLDKF  257 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------~~~~~~f  257 (309)
                        .+..+++||+|++.+++++..  +...+++.+.++|+|||  .+++.....                    ..+...+
T Consensus       111 --~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG--~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (263)
T PTZ00098        111 --KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNG--ILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEY  186 (263)
T ss_pred             --CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCc--EEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHH
Confidence              233457899999998877653  78899999999999999  555544211                    1134567


Q ss_pred             HHHHHhCCCeEEEEec
Q 021691          258 LEEIEGNHLHFSIIEN  273 (309)
Q Consensus       258 ~~~~~~~G~~~~~~~~  273 (309)
                      .+.++++||.....+.
T Consensus       187 ~~~l~~aGF~~v~~~d  202 (263)
T PTZ00098        187 GDLIKSCNFQNVVAKD  202 (263)
T ss_pred             HHHHHHCCCCeeeEEe
Confidence            7889999998876654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.55  E-value=3.7e-14  Score=125.02  Aligned_cols=126  Identities=17%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             CceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCc
Q 021691          111 GLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTT  189 (309)
Q Consensus       111 G~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~  189 (309)
                      |....|..  .+.+.+    ...+|.+|||+|||||.++..+++..+ ..+|+++|.++.|++.+++++...+..    +
T Consensus        30 g~~~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~----~   99 (233)
T PF01209_consen   30 GQDRRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ----N   99 (233)
T ss_dssp             -------S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------S
T ss_pred             cHHHHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC----C
Confidence            44435765  333333    345688999999999999999888764 469999999999999999999887652    5


Q ss_pred             eEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          190 VKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       190 v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      +.....|..  ..+..+++||+|+++..+++..+....++++.++|||||  .+++....+
T Consensus       100 i~~v~~da~--~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG--~l~ile~~~  156 (233)
T PF01209_consen  100 IEFVQGDAE--DLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGG--RLVILEFSK  156 (233)
T ss_dssp             EEEEE-BTT--B--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEE--EEEEEEEEB
T ss_pred             eeEEEcCHH--HhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCe--EEEEeeccC
Confidence            666665543  345667899999999999999999999999999999999  555555444

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.55  E-value=1.2e-13  Score=123.75  Aligned_cols=129  Identities=12%  Similarity=0.142  Sum_probs=98.8

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||+|..+..+++.  +.+|+++|++++|++.+++++...+..   .++++...+..+.. +...++||+|+
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~---~~v~~~~~d~~~l~-~~~~~~fD~V~  117 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVS---DNMQFIHCAAQDIA-QHLETPVDLIL  117 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCc---cceEEEEcCHHHHh-hhcCCCCCEEE
Confidence            5679999999999999999886  579999999999999999999887752   34555554443211 12356899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec--------------------------------CCchHHHHHHHH
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK--------------------------------RGDSLDKFLEEI  261 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~--------------------------------r~~~~~~f~~~~  261 (309)
                      +..++++..+...+++.+.++|+|||  .+++....                                ...+.+++.+.+
T Consensus       118 ~~~vl~~~~~~~~~l~~~~~~LkpgG--~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l  195 (255)
T PRK11036        118 FHAVLEWVADPKSVLQTLWSVLRPGG--ALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL  195 (255)
T ss_pred             ehhHHHhhCCHHHHHHHHHHHcCCCe--EEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence            99999998889999999999999999  44332111                                112346777888


Q ss_pred             HhCCCeEEE
Q 021691          262 EGNHLHFSI  270 (309)
Q Consensus       262 ~~~G~~~~~  270 (309)
                      +++||++..
T Consensus       196 ~~aGf~~~~  204 (255)
T PRK11036        196 EEAGWQIMG  204 (255)
T ss_pred             HHCCCeEee
Confidence            999998864

>PRK14967 putative methyltransferase; Provisional

Probab=99.54  E-value=7.6e-13  Score=116.14  Aligned_cols=142  Identities=19%  Similarity=0.199  Sum_probs=102.0

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      +..|++.+... ...++.+|||+|||+|.+++.+++. +..+|+++|+++.+++.+++|+..++.     ++.+...|+.
T Consensus        22 s~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~~~~~~d~~   94 (223)
T PRK14967         22 TQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV-----DVDVRRGDWA   94 (223)
T ss_pred             HHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-----eeEEEECchh
Confidence            45677766543 3456789999999999999998875 556999999999999999999988875     2455555554


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCcc---------------------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHH
Q 021691          199 QDDFPYIVDTFDVIVASDCTFFKE---------------------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKF  257 (309)
Q Consensus       199 ~~~~~~~~~~fDvIi~~d~ly~~~---------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f  257 (309)
                      ..   ....+||+|+++.+.+...                     ....+++.+.++|+++|  .+++..... .....+
T Consensus        95 ~~---~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG--~l~~~~~~~-~~~~~~  168 (223)
T PRK14967         95 RA---VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGG--SLLLVQSEL-SGVERT  168 (223)
T ss_pred             hh---ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCc--EEEEEEecc-cCHHHH
Confidence            32   2346899999975543221                     14567888999999999  455443332 245678


Q ss_pred             HHHHHhCCCeEEEEec
Q 021691          258 LEEIEGNHLHFSIIEN  273 (309)
Q Consensus       258 ~~~~~~~G~~~~~~~~  273 (309)
                      ++.+++.|+.++....
T Consensus       169 ~~~l~~~g~~~~~~~~  184 (223)
T PRK14967        169 LTRLSEAGLDAEVVAS  184 (223)
T ss_pred             HHHHHHCCCCeEEEEe
Confidence            8889999998766543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.54  E-value=2.6e-13  Score=116.91  Aligned_cols=99  Identities=20%  Similarity=0.306  Sum_probs=80.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++++|||+|||+|..++.+|+.  +.+|+++|.++.+++.+++++..++..    ++.+...++....   ..++||+
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~----~v~~~~~d~~~~~---~~~~fD~   98 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLD----NLHTAVVDLNNLT---FDGEYDF   98 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCC----cceEEecChhhCC---cCCCcCE
Confidence            446789999999999999999886  569999999999999999998887762    3555555543322   2357999


Q ss_pred             EEEcCCCCCc--ccHHHHHHHHHHHHhcCC
Q 021691          212 IVASDCTFFK--EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G  239 (309)
                      |+++.++|+.  .....+++.+.++|+|||
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG  128 (197)
T PRK11207         99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGG  128 (197)
T ss_pred             EEEecchhhCCHHHHHHHHHHHHHHcCCCc
Confidence            9999988764  467899999999999999

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.54  E-value=1.5e-13  Score=128.61  Aligned_cols=119  Identities=19%  Similarity=0.185  Sum_probs=85.9

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF  202 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~  202 (309)
                      +++++.+.....+.+|||||||+|.+++.+++..+..+|+++|.|+.+++.+++|++.|+... ..++.+..-|..   .
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~-~~~v~~~~~D~l---~  292 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA-LDRCEFMINNAL---S  292 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc-CceEEEEEcccc---c
Confidence            344444433333569999999999999999998888899999999999999999999987521 123444333221   1


Q ss_pred             CCCCCCccEEEEcCCCCCc-----ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          203 PYIVDTFDVIVASDCTFFK-----EFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~-----~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .....+||+|+++.++|..     .....+++.++++|++||  .+++..
T Consensus       293 ~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG--~L~iV~  340 (378)
T PRK15001        293 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING--ELYIVA  340 (378)
T ss_pred             cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC--EEEEEE
Confidence            1223589999997776543     235678999999999999  555544

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.54  E-value=3.7e-13  Score=130.89  Aligned_cols=152  Identities=16%  Similarity=0.154  Sum_probs=112.6

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .++.+..-.+.+.....+.++.+|||+|||+|..++.+++.. +.+|+++|+++.+++.+++|.....     .++.+..
T Consensus       247 ~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-----~~v~~~~  320 (475)
T PLN02336        247 VSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-----CSVEFEV  320 (475)
T ss_pred             CCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-----CceEEEE
Confidence            344554444445444445578899999999999999888876 4589999999999999998865222     3566666


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-------------------CchHH
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-------------------GDSLD  255 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-------------------~~~~~  255 (309)
                      .|+....  .+.++||+|++.+++++..+...+++.++++|+|||  .+++....+                   ..+.+
T Consensus       321 ~d~~~~~--~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  396 (475)
T PLN02336        321 ADCTKKT--YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGG--KVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQ  396 (475)
T ss_pred             cCcccCC--CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCe--EEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHH
Confidence            6665432  334689999999999999999999999999999999  555543211                   12345


Q ss_pred             HHHHHHHhCCCeEEEEeccCc
Q 021691          256 KFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       256 ~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      .+.+.++++||.+..++.+..
T Consensus       397 ~~~~~l~~aGF~~i~~~d~~~  417 (475)
T PLN02336        397 AYGQMLKDAGFDDVIAEDRTD  417 (475)
T ss_pred             HHHHHHHHCCCeeeeeecchH
Confidence            677889999999877665443

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.53  E-value=2.2e-13  Score=122.73  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=107.4

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      .|.....+++.....+.+|.+|||||||.|.+++.+|+..+ .+|++++.|++..+.+++.+...++.   ..+.+...|
T Consensus        45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~gl~---~~v~v~~~D  120 (273)
T PF02353_consen   45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAGLE---DRVEVRLQD  120 (273)
T ss_dssp             HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSS---STEEEEES-
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEee
Confidence            45556777888888899999999999999999999999885 59999999999999999999998884   567777776


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeec---------C---------------
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPK---------R---------------  250 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~---------r---------------  250 (309)
                      |.+.     ..+||.|++..++.+.  +..+.+++.+.++|+|||  .+++....         +               
T Consensus       121 ~~~~-----~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG--~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg  193 (273)
T PF02353_consen  121 YRDL-----PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGG--RLVLQTITHRDPPYHAERRSSSDFIRKYIFPGG  193 (273)
T ss_dssp             GGG--------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTE--EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS
T ss_pred             cccc-----CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCc--EEEEEecccccccchhhcCCCceEEEEeeCCCC
Confidence            6532     3489999999999886  678999999999999999  44432210         0               


Q ss_pred             -CchHHHHHHHHHhCCCeEEEEeccC
Q 021691          251 -GDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       251 -~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                       -.+...+...+.+.||.+..+++..
T Consensus       194 ~lps~~~~~~~~~~~~l~v~~~~~~~  219 (273)
T PF02353_consen  194 YLPSLSEILRAAEDAGLEVEDVENLG  219 (273)
T ss_dssp             ---BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred             CCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence             1134456667888999998877644

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.53  E-value=4.1e-13  Score=124.06  Aligned_cols=132  Identities=18%  Similarity=0.222  Sum_probs=100.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||||||+|..++.+++..++.+|+++|.+++|++.++++...++       +.+...+..  ..+...++||+|+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~-------i~~i~gD~e--~lp~~~~sFDvVI  183 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-------CKIIEGDAE--DLPFPTDYADRYV  183 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccC-------CeEEeccHH--hCCCCCCceeEEE
Confidence            5789999999999999998887777899999999999999998765332       333333332  2233457899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC---------------CchHHHHHHHHHhCCCeEEEEeccCc
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR---------------GDSLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---------------~~~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      ++.++++..+...+++.+.++|++||  .+++..+..               ..+.+++.+.++++||....++....
T Consensus       184 s~~~L~~~~d~~~~L~e~~rvLkPGG--~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~  259 (340)
T PLN02490        184 SAGSIEYWPDPQRGIKEAYRVLKIGG--KACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGP  259 (340)
T ss_pred             EcChhhhCCCHHHHHHHHHHhcCCCc--EEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence            99999988888999999999999999  554443211               12457788999999999876665433

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.53  E-value=2.4e-14  Score=124.68  Aligned_cols=110  Identities=16%  Similarity=0.249  Sum_probs=83.4

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      +.|++|||+|||+|+++..||+.  ++.|+|+|.+++|++.++.....+-...  ..+. ..+...........+.||.|
T Consensus        88 ~~g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~--~~~~-y~l~~~~~~~E~~~~~fDaV  162 (282)
T KOG1270|consen   88 LLGMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLE--GAIA-YRLEYEDTDVEGLTGKFDAV  162 (282)
T ss_pred             cCCceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhc--cccc-eeeehhhcchhhccccccee
Confidence            44689999999999999999997  6899999999999999998855443321  1111 11222222223334679999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      +|++++.|..+++.+++.+.++|+|+|  .+++.+-.
T Consensus       163 vcsevleHV~dp~~~l~~l~~~lkP~G--~lfittin  197 (282)
T KOG1270|consen  163 VCSEVLEHVKDPQEFLNCLSALLKPNG--RLFITTIN  197 (282)
T ss_pred             eeHHHHHHHhCHHHHHHHHHHHhCCCC--ceEeeehh
Confidence            999999999999999999999999999  55555533

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.52  E-value=1.1e-13  Score=119.77  Aligned_cols=129  Identities=12%  Similarity=0.067  Sum_probs=97.2

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC-CCCCCCCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW-NQDDFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w-~~~~~~~~~~~fDvI  212 (309)
                      .+.+|||+|||+|..+..+++..+..+|+++|.++++++.+++++..++.    .++.+...++ .........++||+|
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~----~~v~~~~~d~~~~l~~~~~~~~~D~V  115 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL----TNLRLLCGDAVEVLLDMFPDGSLDRI  115 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC----CCEEEEecCHHHHHHHHcCccccceE
Confidence            46799999999999999998887778999999999999999999988875    3466666655 221111335689999


Q ss_pred             EEcCCCCCcc--------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691          213 VASDCTFFKE--------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       213 i~~d~ly~~~--------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~  269 (309)
                      +++.+..+..        ..+.+++.+.++|+|+|  .+++ ............+.+++.|+.++
T Consensus       116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG--~l~i-~~~~~~~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGG--EIHF-ATDWEGYAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             EEECCCCCCCccccccccCCHHHHHHHHHHcCCCC--EEEE-EcCCHHHHHHHHHHHHhCccccc
Confidence            9865432211        25789999999999999  4444 44444556778889999998765

>PRK14968 putative methyltransferase; Provisional

Probab=99.52  E-value=1e-12  Score=111.65  Aligned_cols=144  Identities=23%  Similarity=0.245  Sum_probs=103.8

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      -++-+..|..++..    .++++|||+|||+|..+..+++.  +.+|+++|.++++++.+++|+..++...  ..+.+..
T Consensus         8 p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~--~~~~~~~   79 (188)
T PRK14968          8 PAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRN--NGVEVIR   79 (188)
T ss_pred             cchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCC--cceEEEe
Confidence            45666677776653    46889999999999999998887  5799999999999999999999887631  1155555


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCC---------------------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCch
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFF---------------------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDS  253 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~---------------------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~  253 (309)
                      .|+.+.   ....+||+|+++.+++.                     ......+++.+.++|+++|  .+++..+. ...
T Consensus        80 ~d~~~~---~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG--~~~~~~~~-~~~  153 (188)
T PRK14968         80 SDLFEP---FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG--RILLLQSS-LTG  153 (188)
T ss_pred             cccccc---ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCe--EEEEEEcc-cCC
Confidence            554332   22347999999766543                     1224668899999999999  44443332 223


Q ss_pred             HHHHHHHHHhCCCeEEEEe
Q 021691          254 LDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       254 ~~~f~~~~~~~G~~~~~~~  272 (309)
                      .+.+.+.+.+.||.+..+.
T Consensus       154 ~~~l~~~~~~~g~~~~~~~  172 (188)
T PRK14968        154 EDEVLEYLEKLGFEAEVVA  172 (188)
T ss_pred             HHHHHHHHHHCCCeeeeee
Confidence            4667888999999876543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.52  E-value=5.6e-13  Score=120.41  Aligned_cols=134  Identities=16%  Similarity=0.151  Sum_probs=102.2

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      .+.+|.+|||+|||+|..++.+++..+. .+|+++|.++.+++.++++...++.    .++.+...++..  .+..+++|
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~----~~v~~~~~d~~~--l~~~~~~f  147 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY----TNVEFRLGEIEA--LPVADNSV  147 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC----CCEEEEEcchhh--CCCCCCce
Confidence            3557899999999999988877776544 4899999999999999999887765    245555555432  23345689


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec---------------------CCchHHHHHHHHHhCCCeE
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK---------------------RGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~---------------------r~~~~~~f~~~~~~~G~~~  268 (309)
                      |+|+++.++++..+.+.+++.+.++|+|||  .+++....                     ...+..++.+.++++||..
T Consensus       148 D~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~  225 (272)
T PRK11873        148 DVIISNCVINLSPDKERVFKEAFRVLKPGG--RFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD  225 (272)
T ss_pred             eEEEEcCcccCCCCHHHHHHHHHHHcCCCc--EEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence            999998888888888999999999999999  55554311                     1124567888899999987


Q ss_pred             EEEe
Q 021691          269 SIIE  272 (309)
Q Consensus       269 ~~~~  272 (309)
                      ..+.
T Consensus       226 v~i~  229 (272)
T PRK11873        226 ITIQ  229 (272)
T ss_pred             eEEE
Confidence            5543

>TIGR00452 methyltransferase, putative

Probab=99.51  E-value=8.7e-13  Score=120.92  Aligned_cols=148  Identities=14%  Similarity=0.110  Sum_probs=101.7

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      -|-|......++. +....+|++|||+|||+|..+..++.. ++..|+++|.++.|+..++..-...+.   ...+.+..
T Consensus       103 e~~s~~~~~~~l~-~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~---~~~v~~~~  177 (314)
T TIGR00452       103 EWRSDIKWDRVLP-HLSPLKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDN---DKRAILEP  177 (314)
T ss_pred             HHHHHHHHHHHHH-hcCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhcc---CCCeEEEE
Confidence            4666665554443 345678999999999999998887765 556899999999998765432221111   12344444


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-----c--------C---------Cc
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-----K--------R---------GD  252 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-----~--------r---------~~  252 (309)
                      .+..+  .+. ..+||+|++..++||..+....++.++++|++||  .+++.+.     .        +         ..
T Consensus       178 ~~ie~--lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG--~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flp  252 (314)
T TIGR00452       178 LGIEQ--LHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKG--ELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIP  252 (314)
T ss_pred             CCHHH--CCC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCC--EEEEEEEEecCccccccCchHHHHhccccccCC
Confidence            43322  222 2479999999999999999999999999999999  4544321     0        0         11


Q ss_pred             hHHHHHHHHHhCCCeEEEEe
Q 021691          253 SLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       253 ~~~~f~~~~~~~G~~~~~~~  272 (309)
                      +...+.+.++++||+...+.
T Consensus       253 S~~~L~~~L~~aGF~~V~i~  272 (314)
T TIGR00452       253 SVSALKNWLEKVGFENFRIL  272 (314)
T ss_pred             CHHHHHHHHHHCCCeEEEEE
Confidence            34566788999999976544

Known examples to date are restricted to the proteobacteria.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.51  E-value=1e-12  Score=117.37  Aligned_cols=143  Identities=17%  Similarity=0.129  Sum_probs=98.6

Q ss_pred             HHHHHHHHhhCcC-cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          119 EDVLAFFSLSHAD-MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       119 a~~La~~l~~~~~-~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      +..|.+.+..... ...+.+|||+|||+|.+++.+++..++.+|+++|+|+.+++.+++|+..|+.       ++...|+
T Consensus        70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~-------~~~~~D~  142 (251)
T TIGR03704        70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG-------TVHEGDL  142 (251)
T ss_pred             HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------EEEEeec
Confidence            4556555544322 1234589999999999999999887778999999999999999999988763       3344444


Q ss_pred             CCCCCCCCCCCccEEEEcCCCCCcc--------------------------cHHHHHHHHHHHHhcCCCeEEEEEeecCC
Q 021691          198 NQDDFPYIVDTFDVIVASDCTFFKE--------------------------FHKDLARIIKFLLKKVGPSEALFFSPKRG  251 (309)
Q Consensus       198 ~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~  251 (309)
                      .........++||+|+++.+.....                          .+..+++.+.++|+++|  .+++.. . .
T Consensus       143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG--~l~l~~-~-~  218 (251)
T TIGR03704       143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGG--HLLVET-S-E  218 (251)
T ss_pred             hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCC--EEEEEE-C-c
Confidence            3221111235799999965433111                          13477888889999999  444433 2 2


Q ss_pred             chHHHHHHHHHhCCCeEEEEe
Q 021691          252 DSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       252 ~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      .......+.+++.||......
T Consensus       219 ~~~~~v~~~l~~~g~~~~~~~  239 (251)
T TIGR03704       219 RQAPLAVEAFARAGLIARVAS  239 (251)
T ss_pred             chHHHHHHHHHHCCCCceeeE
Confidence            345678888999999876654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=3.6e-13  Score=120.57  Aligned_cols=116  Identities=22%  Similarity=0.333  Sum_probs=87.4

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF  202 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~  202 (309)
                      ++.++++.....+.+|||||||.|.+|+.+|+..|..+++.+|.|..+++.+|+|+..|+...    ..+    |.....
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~----~~v----~~s~~~  218 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN----TEV----WASNLY  218 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc----cEE----EEeccc
Confidence            344444444444559999999999999999999998999999999999999999999998842    111    111222


Q ss_pred             CCCCCCccEEEEcCCCCCccc-----HHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          203 PYIVDTFDVIVASDCTFFKEF-----HKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~-----~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ....++||+||++.++|....     -..++....+.|++||  .+.+...
T Consensus       219 ~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG--eL~iVan  267 (300)
T COG2813         219 EPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG--ELWIVAN  267 (300)
T ss_pred             ccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC--EEEEEEc
Confidence            223348999999999887433     3478999999999999  5555554

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.50  E-value=3.4e-13  Score=115.95  Aligned_cols=98  Identities=14%  Similarity=0.223  Sum_probs=78.1

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..++.+|+.  +.+|+++|.++.|++.+++++..+++.     +.....+.....   ..++||+
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-----v~~~~~d~~~~~---~~~~fD~   97 (195)
T TIGR00477        28 TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-----LRTDAYDINAAA---LNEDYDF   97 (195)
T ss_pred             cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-----ceeEeccchhcc---ccCCCCE
Confidence            345679999999999999999885  569999999999999999998877762     344444432211   2357999


Q ss_pred             EEEcCCCCCc--ccHHHHHHHHHHHHhcCC
Q 021691          212 IVASDCTFFK--EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G  239 (309)
                      |+++.++++.  ...+.+++.+.++|+|||
T Consensus        98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  127 (195)
T TIGR00477        98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGG  127 (195)
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHhCCCc
Confidence            9999888764  567899999999999999

Part of a tellurite-reducing operon tehA and tehB

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.50  E-value=8.7e-13  Score=117.78  Aligned_cols=136  Identities=23%  Similarity=0.201  Sum_probs=99.3

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      ..+....+.+.+...  ..++++|||+|||+|.+++.+++ .++.+|+++|+++.+++.+++|+..|++.   ..+.+..
T Consensus       102 ~h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~~~~~~  175 (250)
T PRK00517        102 THPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVE---LNVYLPQ  175 (250)
T ss_pred             CCHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCC---ceEEEcc
Confidence            346666666666543  34789999999999999998666 46667999999999999999999998872   2222211


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                                ...+||+|+++-.   ...+..++..+.++|++||  .+++.... ....+.+.+.+++.||.+....
T Consensus       176 ----------~~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG--~lilsgi~-~~~~~~v~~~l~~~Gf~~~~~~  237 (250)
T PRK00517        176 ----------GDLKADVIVANIL---ANPLLELAPDLARLLKPGG--RLILSGIL-EEQADEVLEAYEEAGFTLDEVL  237 (250)
T ss_pred             ----------CCCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCc--EEEEEECc-HhhHHHHHHHHHHCCCEEEEEE
Confidence                      1127999998532   3446778899999999999  55554433 3455778889999999876543

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.50  E-value=9.7e-14  Score=104.15  Aligned_cols=91  Identities=19%  Similarity=0.238  Sum_probs=74.2

Q ss_pred             EEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCC
Q 021691          139 IELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCT  218 (309)
Q Consensus       139 LELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~l  218 (309)
                      ||+|||+|..+..+++. ++.+|+++|.++++++.++++....+.       .+...+..  ..+..+++||+|++..++
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~-------~~~~~d~~--~l~~~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGV-------SFRQGDAE--DLPFPDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTE-------EEEESBTT--SSSS-TT-EEEEEEESHG
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCc-------hheeehHH--hCccccccccccccccce
Confidence            89999999999999887 788999999999999999987665433       34444433  335567899999999999


Q ss_pred             CCcccHHHHHHHHHHHHhcCC
Q 021691          219 FFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       219 y~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ++.++...+++++.++|||+|
T Consensus        71 ~~~~~~~~~l~e~~rvLk~gG   91 (95)
T PF08241_consen   71 HHLEDPEAALREIYRVLKPGG   91 (95)
T ss_dssp             GGSSHHHHHHHHHHHHEEEEE
T ss_pred             eeccCHHHHHHHHHHHcCcCe
Confidence            999999999999999999999

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.50  E-value=1.4e-12  Score=112.38  Aligned_cols=135  Identities=15%  Similarity=0.174  Sum_probs=101.2

Q ss_pred             CcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691          129 HADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD  207 (309)
Q Consensus       129 ~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~  207 (309)
                      ...+.++.+|||+|||+|.+++.+|+..+ +.+|+++|.++.+++.+++|+..+++.   .++.+...+..+. .+...+
T Consensus        35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~---~~v~~~~~d~~~~-l~~~~~  110 (198)
T PRK00377         35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL---NNIVLIKGEAPEI-LFTINE  110 (198)
T ss_pred             HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC---CCeEEEEechhhh-HhhcCC
Confidence            34667889999999999999999887653 469999999999999999999988752   3455544443221 122336


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      .||.|++..   .......+++.+.++|+|+|  .+++ .....++..+..+.+++.||.++.++.
T Consensus       111 ~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG--~lv~-~~~~~~~~~~~~~~l~~~g~~~~~~~~  170 (198)
T PRK00377        111 KFDRIFIGG---GSEKLKEIISASWEIIKKGG--RIVI-DAILLETVNNALSALENIGFNLEITEV  170 (198)
T ss_pred             CCCEEEECC---CcccHHHHHHHHHHHcCCCc--EEEE-EeecHHHHHHHHHHHHHcCCCeEEEEE
Confidence            899999853   23456889999999999999  4443 444556778888899999997766654

>PRK08317 hypothetical protein; Provisional

Probab=99.49  E-value=1.9e-12  Score=113.81  Aligned_cols=121  Identities=15%  Similarity=0.126  Sum_probs=91.2

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      |-...+-+.+.......++.+|||+|||+|..+..++... +..+|+++|.++.+++.++++.....     .++.+...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-----~~~~~~~~   76 (241)
T PRK08317          2 PDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-----PNVEFVRG   76 (241)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-----CceEEEec
Confidence            3334444455555566788999999999999999988876 45799999999999999998733221     24455544


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      +....  +...++||+|++..++.+..+...+++.+.++|+++|  .+++.
T Consensus        77 d~~~~--~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG--~l~~~  123 (241)
T PRK08317         77 DADGL--PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG--RVVVL  123 (241)
T ss_pred             ccccC--CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCc--EEEEE
Confidence            43322  2345789999999999998899999999999999999  44443

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.49  E-value=8.2e-13  Score=118.23  Aligned_cols=95  Identities=20%  Similarity=0.150  Sum_probs=77.1

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...++.+|||+|||+|.++..+++..+..+|+++|.++.|++.++++    +.       .+...|...  . ...++||
T Consensus        26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~~-------~~~~~d~~~--~-~~~~~fD   91 (255)
T PRK14103         26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----GV-------DARTGDVRD--W-KPKPDTD   91 (255)
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----CC-------cEEEcChhh--C-CCCCCce
Confidence            44577899999999999999999887778999999999999998753    22       233333221  1 1246899


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +|+++.++++..+...+++.+.++|+|||
T Consensus        92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG  120 (255)
T PRK14103         92 VVVSNAALQWVPEHADLLVRWVDELAPGS  120 (255)
T ss_pred             EEEEehhhhhCCCHHHHHHHHHHhCCCCc
Confidence            99999999999899999999999999999

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.48  E-value=1e-14  Score=111.30  Aligned_cols=95  Identities=20%  Similarity=0.231  Sum_probs=64.0

Q ss_pred             EEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--CCCCCCccEEEEcC
Q 021691          139 IELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--PYIVDTFDVIVASD  216 (309)
Q Consensus       139 LELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--~~~~~~fDvIi~~d  216 (309)
                      ||+|||+|..+..+++.++..+|+++|+|+.|++.+++++......    ...  .+.+...+.  ....++||+|+++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~fD~V~~~~   74 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND----NFE--RLRFDVLDLFDYDPPESFDLVVASN   74 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-------EE--EEE--SSS---CCC----SEEEEE-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc----cee--EEEeecCChhhcccccccceehhhh
Confidence            7999999999999988888899999999999999888888776542    122  223322222  12235999999999


Q ss_pred             CCCCcccHHHHHHHHHHHHhcCC
Q 021691          217 CTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       217 ~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ++++.+++..+++.++++|+|||
T Consensus        75 vl~~l~~~~~~l~~~~~~L~pgG   97 (99)
T PF08242_consen   75 VLHHLEDIEAVLRNIYRLLKPGG   97 (99)
T ss_dssp             TTS--S-HHHHHHHHTTT-TSS-
T ss_pred             hHhhhhhHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.48  E-value=1.6e-12  Score=118.36  Aligned_cols=139  Identities=20%  Similarity=0.179  Sum_probs=98.4

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      +.|......+++...  ..+|++|||+|||+|.+++.+++ .++.+|+++|+++.+++.+++|+..|++.   ..+....
T Consensus       142 ~h~tt~l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~---~~~~~~~  215 (288)
T TIGR00406       142 THPTTSLCLEWLEDL--DLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVS---DRLQVKL  215 (288)
T ss_pred             CCHHHHHHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCC---cceEEEe
Confidence            346665555555433  24689999999999999998766 56779999999999999999999999873   2333332


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      .+    ......++||+|+++-.   ...+..++..+.++|+|||  .+++... .......+.+.+++. |.+..
T Consensus       216 ~~----~~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG--~li~sgi-~~~~~~~v~~~~~~~-f~~~~  280 (288)
T TIGR00406       216 IY----LEQPIEGKADVIVANIL---AEVIKELYPQFSRLVKPGG--WLILSGI-LETQAQSVCDAYEQG-FTVVE  280 (288)
T ss_pred             cc----cccccCCCceEEEEecC---HHHHHHHHHHHHHHcCCCc--EEEEEeC-cHhHHHHHHHHHHcc-Cceee
Confidence            21    11223468999999633   3455688999999999999  5555444 334556777778766 76643

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.47  E-value=2.5e-12  Score=116.86  Aligned_cols=127  Identities=15%  Similarity=0.143  Sum_probs=94.0

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++++|||+|||+|..++.+++..+..+|+++|+|+.+++.+++|+..+++.   .++.+...|+...   ....+||+|+
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~---~~i~~~~~D~~~~---~~~~~fD~Iv  194 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE---DRVTLIQSDLFAA---LPGRKYDLIV  194 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhhc---cCCCCccEEE
Confidence            457999999999999999999877789999999999999999999999873   3566766665322   1235799999


Q ss_pred             EcCCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          214 ASDCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       214 ~~d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      ++.+....                         .....+++.+.++|++||  .+ ++....  ....+.+.+.+.||.+
T Consensus       195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG--~l-~~e~g~--~~~~v~~~~~~~~~~~  269 (284)
T TIGR03533       195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENG--VL-VVEVGN--SMEALEEAYPDVPFTW  269 (284)
T ss_pred             ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCC--EE-EEEECc--CHHHHHHHHHhCCCce
Confidence            96543211                         123567888899999999  33 344333  2257778888888876


Q ss_pred             EEE
Q 021691          269 SII  271 (309)
Q Consensus       269 ~~~  271 (309)
                      ...
T Consensus       270 ~~~  272 (284)
T TIGR03533       270 LEF  272 (284)
T ss_pred             eee
Confidence            433

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.47  E-value=2.4e-12  Score=115.35  Aligned_cols=109  Identities=17%  Similarity=0.132  Sum_probs=83.5

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF  202 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~  202 (309)
                      +..+.......++.+|||+|||+|.++..+++..++.+|+++|.++.|++.++++..         ++.+...|....  
T Consensus        20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~---------~~~~~~~d~~~~--   88 (258)
T PRK01683         20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP---------DCQFVEADIASW--   88 (258)
T ss_pred             HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC---------CCeEEECchhcc--
Confidence            334444444567889999999999999999988877899999999999999987642         122222222111  


Q ss_pred             CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                       ....+||+|+++.++++..+...+++.+.++|+|||  .+++
T Consensus        89 -~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG--~~~~  128 (258)
T PRK01683         89 -QPPQALDLIFANASLQWLPDHLELFPRLVSLLAPGG--VLAV  128 (258)
T ss_pred             -CCCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCc--EEEE
Confidence             123589999999999998899999999999999999  4444

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.46  E-value=6.8e-13  Score=109.55  Aligned_cols=99  Identities=26%  Similarity=0.342  Sum_probs=76.0

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++++|||+|||+|..+..+++.  +.+|+++|.++.+++.      .+        +.....+-  .......++||+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~------~~--------~~~~~~~~--~~~~~~~~~fD~   81 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK------RN--------VVFDNFDA--QDPPFPDGSFDL   81 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH------TT--------SEEEEEEC--HTHHCHSSSEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh------hh--------hhhhhhhh--hhhhccccchhh
Confidence            457889999999999999988665  4499999999999888      11        11111110  112234578999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      |++++++++..+...+++.+.++|+|||  .+++..+.+
T Consensus        82 i~~~~~l~~~~d~~~~l~~l~~~LkpgG--~l~~~~~~~  118 (161)
T PF13489_consen   82 IICNDVLEHLPDPEEFLKELSRLLKPGG--YLVISDPNR  118 (161)
T ss_dssp             EEEESSGGGSSHHHHHHHHHHHCEEEEE--EEEEEEEBT
T ss_pred             HhhHHHHhhcccHHHHHHHHHHhcCCCC--EEEEEEcCC
Confidence            9999999999999999999999999999  666666543

...

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.46  E-value=4.4e-12  Score=111.69  Aligned_cols=109  Identities=16%  Similarity=0.099  Sum_probs=86.8

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..++.+|||+|||+|..+..++...+ ..+|+++|.++.+++.+++++..++..   .++.+...+....  +...++||
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~--~~~~~~~D  123 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS---GNVEFVQGDAEAL--PFPDNSFD  123 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc---cCeEEEecccccC--CCCCCCcc
Confidence            34678999999999999999888765 479999999999999999998765442   3455555554432  23346899


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +|+++.++++..+...+++.+.++|+++|  .+++..
T Consensus       124 ~I~~~~~l~~~~~~~~~l~~~~~~L~~gG--~li~~~  158 (239)
T PRK00216        124 AVTIAFGLRNVPDIDKALREMYRVLKPGG--RLVILE  158 (239)
T ss_pred             EEEEecccccCCCHHHHHHHHHHhccCCc--EEEEEE
Confidence            99999999998899999999999999999  555543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.46  E-value=1.2e-12  Score=116.85  Aligned_cols=111  Identities=15%  Similarity=0.111  Sum_probs=81.9

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      .++.+.+.....++.+|||+|||+|.++..+++.  +.+|+++|.++.|++.++++...         ..+...|...  
T Consensus        30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~--   96 (251)
T PRK10258         30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAA---------DHYLAGDIES--   96 (251)
T ss_pred             HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCC---------CCEEEcCccc--
Confidence            3444444333345689999999999998888764  57999999999999999876421         1222333322  


Q ss_pred             CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+..+++||+|+++.++++..+...++..+.++|+|||  .+++..
T Consensus        97 ~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG--~l~~~~  140 (251)
T PRK10258         97 LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGG--VVAFTT  140 (251)
T ss_pred             CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCe--EEEEEe
Confidence            23445689999999999998899999999999999999  455443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.44  E-value=4.7e-12  Score=113.41  Aligned_cols=146  Identities=18%  Similarity=0.221  Sum_probs=101.3

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      |.|...-.+ +..+.....|++|||+|||.|..+..++.. |++.|+|+|.++...-..+.--..-+.     ...+..+
T Consensus        98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~-----~~~~~~l  170 (315)
T PF08003_consen   98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ-----DPPVFEL  170 (315)
T ss_pred             ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC-----CccEEEc
Confidence            666655444 344445679999999999999999997765 788999999887665443322122221     1122223


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe------------ec-C---------Cch
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS------------PK-R---------GDS  253 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~------------~~-r---------~~~  253 (309)
                      ..+-+..+. .+.||+|++..++||..++-..+..++..|++||  .+++-+            |. |         -.+
T Consensus       171 plgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gG--eLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs  247 (315)
T PF08003_consen  171 PLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGG--ELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPS  247 (315)
T ss_pred             Ccchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCC--EEEEEEeeecCCCceEEccCCcccCCCceEEeCC
Confidence            223344444 5789999999999999999999999999999999  454332            11 1         125


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 021691          254 LDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       254 ~~~f~~~~~~~G~~~~~~  271 (309)
                      ...+...++++||.-..+
T Consensus       248 ~~~L~~wl~r~gF~~v~~  265 (315)
T PF08003_consen  248 VAALKNWLERAGFKDVRC  265 (315)
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            678889999999985443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.44  E-value=7e-12  Score=117.94  Aligned_cols=142  Identities=20%  Similarity=0.177  Sum_probs=102.3

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      --|..+.|.+.+....  .++.+|||+|||+|.+++.+++..+..+|+++|+|+.|++.+++|++.++.     ++.+..
T Consensus       234 PRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-----rV~fi~  306 (423)
T PRK14966        234 PRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-----RVEFAH  306 (423)
T ss_pred             CCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----cEEEEE
Confidence            3455677777776543  256799999999999999998877788999999999999999999988764     467777


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      .||.+...+ ..++||+|+++.+....                         ..+..+++.+.+.|+++|  .+++... 
T Consensus       307 gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG--~lilEiG-  382 (423)
T PRK14966        307 GSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGG--FLLLEHG-  382 (423)
T ss_pred             cchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCc--EEEEEEC-
Confidence            777543221 23579999996653211                         124467778888999999  4333222 


Q ss_pred             CCchHHHHHHHHHhCCCeE
Q 021691          250 RGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       250 r~~~~~~f~~~~~~~G~~~  268 (309)
                       ....+...+.+++.||..
T Consensus       383 -~~Q~e~V~~ll~~~Gf~~  400 (423)
T PRK14966        383 -FDQGAAVRGVLAENGFSG  400 (423)
T ss_pred             -ccHHHHHHHHHHHCCCcE
Confidence             233456777788888864

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.43  E-value=3.1e-12  Score=118.89  Aligned_cols=103  Identities=18%  Similarity=0.220  Sum_probs=81.0

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      ..+|||||||+|.+++.+++..+..+|+++|+++.|++.++.|++.|++.   .  .+...|..    ....++||+|++
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~---~--~~~~~D~~----~~~~~~fDlIvs  267 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE---G--EVFASNVF----SDIKGRFDMIIS  267 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---C--EEEEcccc----cccCCCccEEEE
Confidence            45899999999999999999877779999999999999999999999873   1  22222221    123468999999


Q ss_pred             cCCCCC-----cccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          215 SDCTFF-----KEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       215 ~d~ly~-----~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      +.++|.     ......+++.+.++|++||  .+++.+.
T Consensus       268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG--~L~iVan  304 (342)
T PRK09489        268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGG--ELRIVAN  304 (342)
T ss_pred             CCCccCCccccHHHHHHHHHHHHHhcCcCC--EEEEEEe
Confidence            887765     2456889999999999999  5655554

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.43  E-value=2.6e-12  Score=123.85  Aligned_cols=152  Identities=18%  Similarity=0.146  Sum_probs=111.7

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ++.|.+.+.......++.+|||+|||+|.+++.+|+.  +.+|+++|.++.|++.+++|+..|++.    ++.+...|+.
T Consensus       282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~----~v~~~~~d~~  355 (443)
T PRK13168        282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLD----NVTFYHANLE  355 (443)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEeChH
Confidence            4667777766555667889999999999999999887  479999999999999999999999873    4777777765


Q ss_pred             CCCC--CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCc
Q 021691          199 QDDF--PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       199 ~~~~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      +...  +....+||+|++ |+.|..  ....++.+.+ +++++   +++.++ .+.|+.+-+..+.+.|+.++.+..+|.
T Consensus       356 ~~l~~~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~-~~~~~---ivyvSC-np~tlaRDl~~L~~~gY~l~~i~~~Dm  427 (443)
T PRK13168        356 EDFTDQPWALGGFDKVLL-DPPRAG--AAEVMQALAK-LGPKR---IVYVSC-NPATLARDAGVLVEAGYRLKRAGMLDM  427 (443)
T ss_pred             HhhhhhhhhcCCCCEEEE-CcCCcC--hHHHHHHHHh-cCCCe---EEEEEe-ChHHhhccHHHHhhCCcEEEEEEEecc
Confidence            3221  122457999998 666653  2345565555 34544   444444 667777777888889999999998887


Q ss_pred             hhhhhhhc
Q 021691          277 EIWKRHQM  284 (309)
Q Consensus       277 ~~~~~~~~  284 (309)
                      -++..|-+
T Consensus       428 FP~T~HvE  435 (443)
T PRK13168        428 FPHTGHVE  435 (443)
T ss_pred             CCCCCcEE
Confidence            66665543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.43  E-value=4.1e-12  Score=111.13  Aligned_cols=129  Identities=18%  Similarity=0.157  Sum_probs=92.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++++|||+|||+|.++..+++.  +.+|+++|++++|++.+++++..++..   .++.+...++...     .++||+
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~~~-----~~~fD~  122 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVA---GNVEFEVNDLLSL-----CGEFDI  122 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECChhhC-----CCCcCE
Confidence            457899999999999999998875  569999999999999999998876642   2455555544322     268999


Q ss_pred             EEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC-----------------------CchHHHHHHHHHhCCC
Q 021691          212 IVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR-----------------------GDSLDKFLEEIEGNHL  266 (309)
Q Consensus       212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------~~~~~~f~~~~~~~G~  266 (309)
                      |++.+++++.  .....+++.+.+++++++   ++.+.+..                       ..+.+++.+.++++||
T Consensus       123 ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  199 (219)
T TIGR02021       123 VVCMDVLIHYPASDMAKALGHLASLTKERV---IFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGW  199 (219)
T ss_pred             EEEhhHHHhCCHHHHHHHHHHHHHHhCCCE---EEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCc
Confidence            9999987653  346677888888876443   44443211                       1134567777778888


Q ss_pred             eEEEEec
Q 021691          267 HFSIIEN  273 (309)
Q Consensus       267 ~~~~~~~  273 (309)
                      .+...+.
T Consensus       200 ~v~~~~~  206 (219)
T TIGR02021       200 KIVREGL  206 (219)
T ss_pred             eeeeeec
Confidence            7766554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=5.8e-12  Score=114.01  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=88.3

Q ss_pred             eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691          137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD  216 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d  216 (309)
                      +|||||||+|.+++.+|+.++..+|+++|+|+++++.+++|+..|++    .++.....+|-...    .++||+|+++.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l----~~~~~~~~dlf~~~----~~~fDlIVsNP  184 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL----VRVLVVQSDLFEPL----RGKFDLIVSNP  184 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC----ccEEEEeeeccccc----CCceeEEEeCC
Confidence            89999999999999999998888999999999999999999999997    23444444665332    34899999966


Q ss_pred             CCCCcc-------------------------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC
Q 021691          217 CTFFKE-------------------------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL  266 (309)
Q Consensus       217 ~ly~~~-------------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~  266 (309)
                      +.-..+                         .+..++..+.+.|+++|   ++++.... ...+...+.+.+.|+
T Consensus       185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g---~l~le~g~-~q~~~v~~~~~~~~~  255 (280)
T COG2890         185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGG---VLILEIGL-TQGEAVKALFEDTGF  255 (280)
T ss_pred             CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCc---EEEEEECC-CcHHHHHHHHHhcCC
Confidence            532221                         24567788889999977   44444332 234667788888884

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.43  E-value=2e-12  Score=117.80  Aligned_cols=97  Identities=19%  Similarity=0.295  Sum_probs=79.2

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++++|||+|||+|..++.+++.  +.+|+++|.++.+++.+++++..+++     ++.+...|.....   ..++||+|
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-----~v~~~~~D~~~~~---~~~~fD~I  188 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-----NIRTGLYDINSAS---IQEEYDFI  188 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEechhccc---ccCCccEE
Confidence            34569999999999999998885  56999999999999999999988776     3455555443322   25789999


Q ss_pred             EEcCCCCCc--ccHHHHHHHHHHHHhcCC
Q 021691          213 VASDCTFFK--EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       213 i~~d~ly~~--~~~~~ll~~l~~lLk~~G  239 (309)
                      ++..++++.  +..+.+++.+.++|+|||
T Consensus       189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG  217 (287)
T PRK12335        189 LSTVVLMFLNRERIPAIIKNMQEHTNPGG  217 (287)
T ss_pred             EEcchhhhCCHHHHHHHHHHHHHhcCCCc
Confidence            999888764  478899999999999999

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.43  E-value=5.7e-12  Score=99.46  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=80.5

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY  204 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~  204 (309)
                      .+.......++++|||+|||+|..+..+++..+..+|+++|.++.+++.+++++..++..    ++.+...+.... ...
T Consensus        10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~-~~~   84 (124)
T TIGR02469        10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS----NIVIVEGDAPEA-LED   84 (124)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC----ceEEEecccccc-Chh
Confidence            344444455678999999999999999998877789999999999999999999887652    344443332211 112


Q ss_pred             CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ...+||+|++....   .....+++.+.++|+++|
T Consensus        85 ~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG  116 (124)
T TIGR02469        85 SLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGG  116 (124)
T ss_pred             hcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCC
Confidence            23589999996543   345789999999999999

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK04266 fibrillarin; Provisional

Probab=99.43  E-value=9e-12  Score=109.33  Aligned_cols=153  Identities=14%  Similarity=0.183  Sum_probs=98.3

Q ss_pred             CCceeecccHHH-HHHHHhh---CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691          110 TGLVCHWPSEDV-LAFFSLS---HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF  185 (309)
Q Consensus       110 tG~~~~W~sa~~-La~~l~~---~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~  185 (309)
                      .+++ +|..... ++.+++.   ...+.+|.+|||+|||+|..++.++...+..+|+++|.++.|++.+.+++...    
T Consensus        45 ~~~~-~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----  119 (226)
T PRK04266         45 VEYR-EWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----  119 (226)
T ss_pred             cEEE-EECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----
Confidence            3444 6655332 4444443   34566889999999999999999999876568999999999999888776542    


Q ss_pred             CCCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee------cCC--chHHH
Q 021691          186 GGTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP------KRG--DSLDK  256 (309)
Q Consensus       186 ~~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~------~r~--~~~~~  256 (309)
                        .++.....|-.... ......+||+|++. .. .+.....+++.+.++|||||  .+++.-+      ...  ...+.
T Consensus       120 --~nv~~i~~D~~~~~~~~~l~~~~D~i~~d-~~-~p~~~~~~L~~~~r~LKpGG--~lvI~v~~~~~d~~~~~~~~~~~  193 (226)
T PRK04266        120 --KNIIPILADARKPERYAHVVEKVDVIYQD-VA-QPNQAEIAIDNAEFFLKDGG--YLLLAIKARSIDVTKDPKEIFKE  193 (226)
T ss_pred             --CCcEEEECCCCCcchhhhccccCCEEEEC-CC-ChhHHHHHHHHHHHhcCCCc--EEEEEEecccccCcCCHHHHHHH
Confidence              13344333332211 01123569999963 21 12223456899999999999  5555211      111  12234


Q ss_pred             HHHHHHhCCCeEEEEec
Q 021691          257 FLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       257 f~~~~~~~G~~~~~~~~  273 (309)
                      ..+.++++||+......
T Consensus       194 ~~~~l~~aGF~~i~~~~  210 (226)
T PRK04266        194 EIRKLEEGGFEILEVVD  210 (226)
T ss_pred             HHHHHHHcCCeEEEEEc
Confidence            56888899999866554

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.42  E-value=9.5e-12  Score=110.68  Aligned_cols=142  Identities=20%  Similarity=0.201  Sum_probs=102.0

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      -++....+.+.+..... ..+++|||+|||+|..++.+++..+..+|+++|.++.+++.++.|+..++..    ++.+..
T Consensus        69 p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~  143 (251)
T TIGR03534        69 PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD----NVTFLQ  143 (251)
T ss_pred             CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----eEEEEE
Confidence            34555666666554432 2456999999999999999999877789999999999999999999988762    466666


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcc--------------------------cHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKE--------------------------FHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      .++...   ...++||+|+++.+.+...                          ....+++.+.++|+++|  .+++...
T Consensus       144 ~d~~~~---~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG--~~~~~~~  218 (251)
T TIGR03534       144 SDWFEP---LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGG--WLLLEIG  218 (251)
T ss_pred             Cchhcc---CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCC--EEEEEEC
Confidence            665432   2346899999966544311                          12467888999999999  4444332


Q ss_pred             cCCchHHHHHHHHHhCCCeE
Q 021691          249 KRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       249 ~r~~~~~~f~~~~~~~G~~~  268 (309)
                        ....+.+.+.++++||..
T Consensus       219 --~~~~~~~~~~l~~~gf~~  236 (251)
T TIGR03534       219 --YDQGEAVRALFEAAGFAD  236 (251)
T ss_pred             --ccHHHHHHHHHHhCCCCc
Confidence              233456777888889864

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.42  E-value=3e-12  Score=114.09  Aligned_cols=107  Identities=19%  Similarity=0.249  Sum_probs=82.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHh--cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAAT--TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~--~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      .++.+|||+|||+|..+..+++.  .+..+|+++|.++.|++.+++++..++..   .++++...+....  +  ...+|
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~---~~v~~~~~d~~~~--~--~~~~D  127 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP---TPVDVIEGDIRDI--A--IENAS  127 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEeCChhhC--C--CCCCC
Confidence            36789999999999999888774  35679999999999999999999887652   3456655544322  1  24589


Q ss_pred             EEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          211 VIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       211 vIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      +|+++.++++..  ....+++.+++.|+|||  .+++...
T Consensus       128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG--~l~l~e~  165 (247)
T PRK15451        128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGG--ALVLSEK  165 (247)
T ss_pred             EEehhhHHHhCCHHHHHHHHHHHHHhcCCCC--EEEEEEe
Confidence            999988887643  45789999999999999  5666553

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.41  E-value=8.3e-12  Score=110.08  Aligned_cols=141  Identities=16%  Similarity=0.109  Sum_probs=103.6

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF  202 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~  202 (309)
                      ..|+.......++++|||+|||+|..+..+++.  +.+|+++|.++.+++.+++++..++.     .+.+...++.... 
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~-  108 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-----KIDYRQTTAEELA-  108 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-----ceEEEecCHHHhh-
Confidence            456666555668899999999999999888775  46899999999999999998877654     2344444433221 


Q ss_pred             CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------------CchH
Q 021691          203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----------------------------GDSL  254 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------------~~~~  254 (309)
                      ....++||+|+++.++++..+...+++.+.++|+++|  .+++....+                            -.+.
T Consensus       109 ~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG--~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (233)
T PRK05134        109 AEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGG--LVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKP  186 (233)
T ss_pred             hhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCc--EEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCH
Confidence            1234689999999999998899999999999999999  454443211                            1133


Q ss_pred             HHHHHHHHhCCCeEEEEec
Q 021691          255 DKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       255 ~~f~~~~~~~G~~~~~~~~  273 (309)
                      .++.+.++++||.+.....
T Consensus       187 ~~~~~~l~~~Gf~~v~~~~  205 (233)
T PRK05134        187 SELAAWLRQAGLEVQDITG  205 (233)
T ss_pred             HHHHHHHHHCCCeEeeeee
Confidence            4577788889998765543

>TIGR00740 methyltransferase, putative

Probab=99.40  E-value=7.7e-12  Score=110.86  Aligned_cols=108  Identities=16%  Similarity=0.154  Sum_probs=83.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ++.+|||+|||+|..+..+++..  ++.+|+++|.++.|++.+++++...+..   .++.+...++....    ...+|+
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~---~~v~~~~~d~~~~~----~~~~d~  125 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE---IPVEILCNDIRHVE----IKNASM  125 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEEECChhhCC----CCCCCE
Confidence            67799999999999999888764  5679999999999999999998765431   34666665554322    235899


Q ss_pred             EEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          212 IVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      |+++.++++.  .+...+++.+.+.|+|||  .+++..+.+
T Consensus       126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG--~l~i~d~~~  164 (239)
T TIGR00740       126 VILNFTLQFLPPEDRIALLTKIYEGLNPNG--VLVLSEKFR  164 (239)
T ss_pred             EeeecchhhCCHHHHHHHHHHHHHhcCCCe--EEEEeeccc
Confidence            9998888775  356789999999999999  666665433

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.39  E-value=2.2e-11  Score=101.90  Aligned_cols=130  Identities=16%  Similarity=0.146  Sum_probs=102.6

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ..+.+|.+++|+|||||.+++.+|...+..+|+++|.++++++.+++|++..+.    .++.+...+--+. .+.. .+|
T Consensus        30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~----~n~~vv~g~Ap~~-L~~~-~~~  103 (187)
T COG2242          30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV----DNLEVVEGDAPEA-LPDL-PSP  103 (187)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC----CcEEEEeccchHh-hcCC-CCC
Confidence            456789999999999999999999888889999999999999999999999986    3565554432211 1222 279


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC-eEEEEe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL-HFSIIE  272 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~-~~~~~~  272 (309)
                      |.|+...-    ...+.+++++...|+++|   -++.....-++....++.+++.|+ .+..+.
T Consensus       104 daiFIGGg----~~i~~ile~~~~~l~~gg---rlV~naitlE~~~~a~~~~~~~g~~ei~~v~  160 (187)
T COG2242         104 DAIFIGGG----GNIEEILEAAWERLKPGG---RLVANAITLETLAKALEALEQLGGREIVQVQ  160 (187)
T ss_pred             CEEEECCC----CCHHHHHHHHHHHcCcCC---eEEEEeecHHHHHHHHHHHHHcCCceEEEEE
Confidence            99998644    567899999999999999   455566667788888999999999 554443

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.39  E-value=2e-11  Score=111.97  Aligned_cols=125  Identities=14%  Similarity=0.115  Sum_probs=91.4

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      ++|||+|||+|.+++.+++..+..+|+++|+++.+++.+++|+..+++.   .++.+...|+.+.   ....+||+|+++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~---~~i~~~~~D~~~~---l~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE---DRVTLIESDLFAA---LPGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---CcEEEEECchhhh---CCCCCccEEEEC
Confidence            6899999999999999999887889999999999999999999998863   3567766665322   123579999996


Q ss_pred             CCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691          216 DCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       216 d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      .+....                         ..+..+++.+.++|++||  .++ +.....  ...+.+.+.+.|+.+-.
T Consensus       209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG--~l~-~E~g~~--~~~~~~~~~~~~~~~~~  283 (307)
T PRK11805        209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDG--VLV-VEVGNS--RVHLEEAYPDVPFTWLE  283 (307)
T ss_pred             CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCC--EEE-EEECcC--HHHHHHHHhhCCCEEEE
Confidence            543211                         124577889999999999  343 333332  23466677777776543


Q ss_pred             E
Q 021691          271 I  271 (309)
Q Consensus       271 ~  271 (309)
                      .
T Consensus       284 ~  284 (307)
T PRK11805        284 F  284 (307)
T ss_pred             e
Confidence            3

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.39  E-value=1.6e-11  Score=107.43  Aligned_cols=132  Identities=16%  Similarity=0.125  Sum_probs=96.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ...+.+|||+|||+|..+..+++.  ..+|+++|.++.+++.+++++..++..    ++.+...+...... ...++||+
T Consensus        43 ~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~~~~~~-~~~~~~D~  115 (224)
T TIGR01983        43 PLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLL----KIEYRCTSVEDLAE-KGAKSFDV  115 (224)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEeCCHHHhhc-CCCCCccE
Confidence            346889999999999999887775  457999999999999999998877651    34444443322211 11368999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCC----------------------------chHHHHHHHHHh
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRG----------------------------DSLDKFLEEIEG  263 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~----------------------------~~~~~f~~~~~~  263 (309)
                      |+++.++++..+...+++.+.++|+++|  .+++....+.                            .+..++.+.+++
T Consensus       116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  193 (224)
T TIGR01983       116 VTCMEVLEHVPDPQAFIRACAQLLKPGG--ILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLES  193 (224)
T ss_pred             EEehhHHHhCCCHHHHHHHHHHhcCCCc--EEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHH
Confidence            9999999999999999999999999999  4544432111                            022356677888


Q ss_pred             CCCeEEEEe
Q 021691          264 NHLHFSIIE  272 (309)
Q Consensus       264 ~G~~~~~~~  272 (309)
                      +||.+..+.
T Consensus       194 ~G~~i~~~~  202 (224)
T TIGR01983       194 AGLRVKDVK  202 (224)
T ss_pred             cCCeeeeee
Confidence            888876554

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.38  E-value=2.6e-11  Score=105.63  Aligned_cols=106  Identities=13%  Similarity=0.180  Sum_probs=83.0

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..++.+|||+|||+|..+..+++..+. .+++++|.++.+++.++++..   .   ..++.+...+..+.  +...++||
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~---~~~i~~~~~d~~~~--~~~~~~~D  108 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L---PLNIEFIQADAEAL--PFEDNSFD  108 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c---CCCceEEecchhcC--CCCCCcEE
Confidence            337889999999999999998887654 589999999999999998865   1   12344444444322  23346899


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +|+++..+++..+...+++.+.++|++||  .+++..
T Consensus       109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG--~l~~~~  143 (223)
T TIGR01934       109 AVTIAFGLRNVTDIQKALREMYRVLKPGG--RLVILE  143 (223)
T ss_pred             EEEEeeeeCCcccHHHHHHHHHHHcCCCc--EEEEEE
Confidence            99999999888899999999999999999  555544

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.38  E-value=1.8e-12  Score=101.65  Aligned_cols=106  Identities=24%  Similarity=0.219  Sum_probs=81.6

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      |.+|||+|||+|.+.+.+++.. ..+++++|+++.+++.++.|+..++..   .++.+...|+..........+||+|++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLD---DRVEVIVGDARDLPEPLPDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTT---TTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCC---ceEEEEECchhhchhhccCceeEEEEE
Confidence            5689999999999999988875 689999999999999999999998773   457777666643332344688999999


Q ss_pred             cCCCCCc--------ccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          215 SDCTFFK--------EFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       215 ~d~ly~~--------~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      +.+....        .....+++.+.++|+++|  .+++.
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG--~~~~~  114 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGG--VLVFI  114 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEE--EEEEE
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCe--EEEEE
Confidence            7665532        245788999999999999  44443

...

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.37  E-value=4.6e-12  Score=119.84  Aligned_cols=136  Identities=24%  Similarity=0.169  Sum_probs=96.6

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCCCCCCcc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPYIVDTFD  210 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~~~~~fD  210 (309)
                      .+|++|||+|||+|.+++.++. .++.+|+++|.++.+++.+++|+..|++..  .++++...|.-+..  ......+||
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~--~~v~~i~~D~~~~l~~~~~~~~~fD  295 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLDL--SKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCC--CcEEEEEccHHHHHHHHHhcCCCCC
Confidence            4689999999999999987554 466799999999999999999999998731  24555554432211  011235799


Q ss_pred             EEEEcCCCCCcc----------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH----HhCCCeEEEEecc
Q 021691          211 VIVASDCTFFKE----------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI----EGNHLHFSIIENY  274 (309)
Q Consensus       211 vIi~~d~ly~~~----------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~----~~~G~~~~~~~~~  274 (309)
                      +|++ |+.|+..          .+..++....++|+++|  .++.+++...-+.+.|.+.+    .++|-.+..++..
T Consensus       296 lVil-DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG--~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~  370 (396)
T PRK15128        296 VIVM-DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGG--ILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQF  370 (396)
T ss_pred             EEEE-CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCe--EEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEc
Confidence            9998 5555432          35566677889999999  67777776666666666554    4557777766653

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.37  E-value=1.8e-11  Score=110.50  Aligned_cols=142  Identities=21%  Similarity=0.253  Sum_probs=102.1

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      -.|..+.|.+.+.......++.+|||+|||+|..++.++...+..+|+++|+++.+++.+++|+. +..   ..++.+..
T Consensus        89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~---~~~i~~~~  164 (275)
T PRK09328         89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL---GARVEFLQ  164 (275)
T ss_pred             CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC---CCcEEEEE
Confidence            34556777777765444557789999999999999999998877899999999999999999988 222   23567776


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCc--------------------------ccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFK--------------------------EFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~--------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      .|+....   ..++||+|+++.+....                          ..+..+++.+.++|++||  .+++ ..
T Consensus       165 ~d~~~~~---~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG--~l~~-e~  238 (275)
T PRK09328        165 GDWFEPL---PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGG--WLLL-EI  238 (275)
T ss_pred             ccccCcC---CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCC--EEEE-EE
Confidence            6664321   24689999996543321                          123567788889999999  4444 32


Q ss_pred             cCCchHHHHHHHHHhCCCe
Q 021691          249 KRGDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       249 ~r~~~~~~f~~~~~~~G~~  267 (309)
                      . ....+.+.+.+.+.||.
T Consensus       239 g-~~~~~~~~~~l~~~gf~  256 (275)
T PRK09328        239 G-YDQGEAVRALLAAAGFA  256 (275)
T ss_pred             C-chHHHHHHHHHHhCCCc
Confidence            2 22335677788888886

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.37  E-value=1.2e-11  Score=113.44  Aligned_cols=131  Identities=15%  Similarity=0.116  Sum_probs=86.6

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-CCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-GGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .++.+|||+|||+|.+++.+++.  +.+|+++|+++.|++.+++++...+... ....+.+...|+.     ...++||+
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~-----~l~~~fD~  215 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE-----SLSGKYDT  215 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh-----hcCCCcCE
Confidence            46789999999999999998885  5699999999999999999987643210 0123444444432     22468999


Q ss_pred             EEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecC-----------------------CchHHHHHHHHHhCCC
Q 021691          212 IVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKR-----------------------GDSLDKFLEEIEGNHL  266 (309)
Q Consensus       212 Ii~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------~~~~~~f~~~~~~~G~  266 (309)
                      |++.++++|..+  ...+++.+.++ .+++  .++.+.+..                       ..+.+++.+.++++||
T Consensus       216 Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~--liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf  292 (315)
T PLN02585        216 VTCLDVLIHYPQDKADGMIAHLASL-AEKR--LIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGW  292 (315)
T ss_pred             EEEcCEEEecCHHHHHHHHHHHHhh-cCCE--EEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCC
Confidence            999999876433  33455555543 3333  333222110                       0135677888888898


Q ss_pred             eEEEEec
Q 021691          267 HFSIIEN  273 (309)
Q Consensus       267 ~~~~~~~  273 (309)
                      .+...+.
T Consensus       293 ~v~~~~~  299 (315)
T PLN02585        293 KVARREM  299 (315)
T ss_pred             EEEEEEE
Confidence            8876554

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.36  E-value=1.7e-11  Score=106.39  Aligned_cols=126  Identities=18%  Similarity=0.187  Sum_probs=97.4

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhcCC------cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATTEA------LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~------~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      .+...|.+|||++||||.++..+.+..+.      .+|+..|+||+||+..+++....++... ..+.....  +.+..+
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~-~~~~w~~~--dAE~Lp  172 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKAS-SRVEWVEG--DAEDLP  172 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC-CceEEEeC--CcccCC
Confidence            35567899999999999999988887766      7999999999999999999877666321 12322222  345567


Q ss_pred             CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL  258 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~  258 (309)
                      +++.+||...++.-+-+..+++..+++.+|+|||||+..++-+.....+.+..|.
T Consensus       173 Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy  227 (296)
T KOG1540|consen  173 FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY  227 (296)
T ss_pred             CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence            7889999999999898899999999999999999996655555554444444443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.36  E-value=7e-12  Score=127.01  Aligned_cols=132  Identities=20%  Similarity=0.113  Sum_probs=97.0

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|++|||||||+|.+++.+|+. |+.+|+++|.|+.+++.+++|+..|++..  .++++...|..+.. .....+||+|
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~--~~v~~i~~D~~~~l-~~~~~~fDlI  612 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSG--RQHRLIQADCLAWL-KEAREQFDLI  612 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCc--cceEEEEccHHHHH-HHcCCCcCEE
Confidence            36899999999999999997774 67789999999999999999999998741  24555555432111 1114589999


Q ss_pred             EEcCCCCCc------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691          213 VASDCTFFK------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       213 i~~d~ly~~------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      ++. +.|+.            .++..++..+.++|++||  .+++.+..+...  .-.+.+.+.|+.++.++.
T Consensus       613 ilD-PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG--~l~~~~~~~~~~--~~~~~~~~~g~~~~~i~~  680 (702)
T PRK11783        613 FID-PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGG--TLYFSNNKRGFK--MDEEGLAKLGLKAEEITA  680 (702)
T ss_pred             EEC-CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCC--EEEEEeCCccCC--hhHHHHHhCCCeEEEEec
Confidence            994 44432            245678889999999999  555555444333  337778889999988775

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=2.4e-11  Score=101.44  Aligned_cols=127  Identities=17%  Similarity=0.155  Sum_probs=84.3

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      .....|++|+|||||||.+++.+ +.+|+.+|+++|+++++++.+++|+...+     .+|.+..-|     .......|
T Consensus        41 ~g~l~g~~V~DlG~GTG~La~ga-~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-----g~v~f~~~d-----v~~~~~~~  109 (198)
T COG2263          41 RGDLEGKTVLDLGAGTGILAIGA-ALLGASRVLAVDIDPEALEIARANAEELL-----GDVEFVVAD-----VSDFRGKF  109 (198)
T ss_pred             cCCcCCCEEEEcCCCcCHHHHHH-HhcCCcEEEEEecCHHHHHHHHHHHHhhC-----CceEEEEcc-----hhhcCCcc
Confidence            35678999999999999999985 55789999999999999999999999843     345555443     33445789


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      |.++++.++-....+ .=...+...|.-..   + +.+..+..+.+-......++|+.+....
T Consensus       110 dtvimNPPFG~~~rh-aDr~Fl~~Ale~s~---v-VYsiH~a~~~~f~~~~~~~~G~~v~~~~  167 (198)
T COG2263         110 DTVIMNPPFGSQRRH-ADRPFLLKALEISD---V-VYSIHKAGSRDFVEKFAADLGGTVTHIE  167 (198)
T ss_pred             ceEEECCCCcccccc-CCHHHHHHHHHhhh---e-EEEeeccccHHHHHHHHHhcCCeEEEEE
Confidence            999997765432111 11122222332222   3 3343443454545566788898876654

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.35  E-value=2.5e-11  Score=104.32  Aligned_cols=135  Identities=14%  Similarity=0.128  Sum_probs=90.0

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY  204 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~  204 (309)
                      .+.......++.+|||+|||+|..++.+++..++.+|+++|.++++++.+++|++.++..    ++++...+.... ...
T Consensus        31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~----~v~~~~~d~~~~-~~~  105 (196)
T PRK07402         31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK----NVEVIEGSAPEC-LAQ  105 (196)
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CeEEEECchHHH-Hhh
Confidence            334444455788999999999999999887767789999999999999999999988762    455544433211 111


Q ss_pred             CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHH---hCCCeEEEE
Q 021691          205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIE---GNHLHFSII  271 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~---~~G~~~~~~  271 (309)
                      ....+|.|+..    .......+++.+.++|+|||  .+++.... .++.....+.++   ..++.+..+
T Consensus       106 ~~~~~d~v~~~----~~~~~~~~l~~~~~~LkpgG--~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  168 (196)
T PRK07402        106 LAPAPDRVCIE----GGRPIKEILQAVWQYLKPGG--RLVATASS-LEGLYAISEGLAQLQARNIEVVQA  168 (196)
T ss_pred             CCCCCCEEEEE----CCcCHHHHHHHHHHhcCCCe--EEEEEeec-HHHHHHHHHHHHhcCCCCceEEEE
Confidence            22346776552    12456889999999999999  55555443 233333334443   445555443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.35  E-value=4.6e-11  Score=108.63  Aligned_cols=142  Identities=17%  Similarity=0.154  Sum_probs=95.7

Q ss_pred             cccHHHHHHHHhhCc-CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          116 WPSEDVLAFFSLSHA-DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       116 W~sa~~La~~l~~~~-~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .|..+.|.+.+.... ...++.+|||+|||+|.+++.++...+..+|+++|+++.+++.+++|+..++..   .++.+..
T Consensus        95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~---~~v~~~~  171 (284)
T TIGR00536        95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE---HRVEFIQ  171 (284)
T ss_pred             CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEE
Confidence            344455555544321 111236999999999999999999877789999999999999999999998873   3477777


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      .||....   ...+||+|+++.+....                         ..+..++..+.++|+++|   .+++...
T Consensus       172 ~d~~~~~---~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG---~l~~e~g  245 (284)
T TIGR00536       172 SNLFEPL---AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNG---FLVCEIG  245 (284)
T ss_pred             CchhccC---cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCC---EEEEEEC
Confidence            7765321   22379999996433211                         135567888899999999   3444333


Q ss_pred             CCchHHHHHHHHH-hCCCe
Q 021691          250 RGDSLDKFLEEIE-GNHLH  267 (309)
Q Consensus       250 r~~~~~~f~~~~~-~~G~~  267 (309)
                      . .......+.+. +.||.
T Consensus       246 ~-~q~~~~~~~~~~~~~~~  263 (284)
T TIGR00536       246 N-WQQKSLKELLRIKFTWY  263 (284)
T ss_pred             c-cHHHHHHHHHHhcCCCc
Confidence            2 22234455555 35664

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.35  E-value=1.4e-11  Score=101.81  Aligned_cols=159  Identities=16%  Similarity=0.181  Sum_probs=115.7

Q ss_pred             eeecccccCCCCceeecc---cHHHHHHHHhhCcC---cCCCC-eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHH
Q 021691          100 EICNRCNIDNTGLVCHWP---SEDVLAFFSLSHAD---MFRSK-RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVD  172 (309)
Q Consensus       100 ~~~~~~~~~~tG~~~~W~---sa~~La~~l~~~~~---~~~g~-~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~  172 (309)
                      ++.|-..++.+|-  +|=   +.+.+..|+..+..   +-... +|||||||.|.+-..|++.-=..+.+++|+++.+++
T Consensus        28 El~Nfr~hgd~GE--vWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~  105 (227)
T KOG1271|consen   28 ELTNFREHGDEGE--VWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVE  105 (227)
T ss_pred             HHhhcccCCCccc--eecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHH
Confidence            3444456788887  584   45668889888765   22333 999999999999888887643456999999999999


Q ss_pred             HHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC--------cccHHHHHHHHHHHHhcCCCeEEE
Q 021691          173 YIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF--------KEFHKDLARIIKFLLKKVGPSEAL  244 (309)
Q Consensus       173 ~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~--------~~~~~~ll~~l~~lLk~~G~~~~i  244 (309)
                      .|+..++.++..   ..|++.++|...+  ....++||+|+--..+-.        ...+...+..+.++|+|+|  .++
T Consensus       106 LA~niAe~~~~~---n~I~f~q~DI~~~--~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~g--ifv  178 (227)
T KOG1271|consen  106 LAQNIAERDGFS---NEIRFQQLDITDP--DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGG--IFV  178 (227)
T ss_pred             HHHHHHHhcCCC---cceeEEEeeccCC--cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCc--EEE
Confidence            999888889884   4589999988765  344567888765322111        1122456788999999999  555


Q ss_pred             EEeecCCchHHHHHHHHHhCCCeEE
Q 021691          245 FFSPKRGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       245 i~~~~r~~~~~~f~~~~~~~G~~~~  269 (309)
                      |.+  ...|.+++.+.+...||.+.
T Consensus       179 ItS--CN~T~dELv~~f~~~~f~~~  201 (227)
T KOG1271|consen  179 ITS--CNFTKDELVEEFENFNFEYL  201 (227)
T ss_pred             EEe--cCccHHHHHHHHhcCCeEEE
Confidence            544  34688899999999888753

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.35  E-value=9.1e-12  Score=107.00  Aligned_cols=128  Identities=11%  Similarity=0.069  Sum_probs=93.0

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~fDvI  212 (309)
                      .+.+|||||||+|.++..+|+..+...|+++|.++.+++.+++++..+++    .++.+...+...... ....+.+|.|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l----~ni~~i~~d~~~~~~~~~~~~~~d~v   91 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL----KNLHVLCGDANELLDKFFPDGSLSKV   91 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC----CCEEEEccCHHHHHHhhCCCCceeEE
Confidence            35689999999999999999988888999999999999999999988776    256666555432111 1223589999


Q ss_pred             EEcCCCCCcc-c-------HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCC-CeE
Q 021691          213 VASDCTFFKE-F-------HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH-LHF  268 (309)
Q Consensus       213 i~~d~ly~~~-~-------~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G-~~~  268 (309)
                      +++.+..+.+ .       .+.+++.+.++|++||  . +++.+........+.+.+.+.+ |..
T Consensus        92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG--~-l~~~td~~~~~~~~~~~~~~~~~f~~  153 (194)
T TIGR00091        92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGG--V-IHFKTDNEPLFEDMLKVLSENDLFEN  153 (194)
T ss_pred             EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCC--E-EEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence            9864332221 1       2679999999999999  4 4444444445566777887776 544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.34  E-value=3.3e-11  Score=117.65  Aligned_cols=125  Identities=14%  Similarity=0.184  Sum_probs=91.0

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||+|.+++.+++..+..+|+++|+|+.+++.+++|+..+++.   .++.+...||-..   ...++||+|+
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~---~~v~~~~~D~~~~---~~~~~fDlIv  211 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT---DRIQIIHSNWFEN---IEKQKFDFIV  211 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc---cceeeeecchhhh---CcCCCccEEE
Confidence            356899999999999999988888889999999999999999999988763   3566666665322   1235799999


Q ss_pred             EcCCCCCc--------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCe
Q 021691          214 ASDCTFFK--------------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       214 ~~d~ly~~--------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~  267 (309)
                      ++.+....                          ..+..+++.+.++|+++|  .+++ ... ....+...+.+.+.||.
T Consensus       212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG--~l~l-Eig-~~q~~~v~~~~~~~g~~  287 (506)
T PRK01544        212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNG--KIIL-EIG-FKQEEAVTQIFLDHGYN  287 (506)
T ss_pred             ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCC--EEEE-EEC-CchHHHHHHHHHhcCCC
Confidence            96543321                          123456778889999999  4443 322 23345667777788886


Q ss_pred             E
Q 021691          268 F  268 (309)
Q Consensus       268 ~  268 (309)
                      .
T Consensus       288 ~  288 (506)
T PRK01544        288 I  288 (506)
T ss_pred             c
Confidence            4

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.34  E-value=2.9e-11  Score=104.77  Aligned_cols=107  Identities=16%  Similarity=0.136  Sum_probs=79.1

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      +..++.+.....++.+|||+|||+|..+..+++..+ ..+|+++|.++++++.+++|+..++..   .++++...|....
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~---~~v~~~~~d~~~~  136 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW---GVVEVYHGDGKRG  136 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEECCcccC
Confidence            334454544556788999999999999988888764 468999999999999999999988762   3456655554322


Q ss_pred             CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          201 DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .  ....+||+|++.....+      +.+.+.+.|++||
T Consensus       137 ~--~~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG  167 (205)
T PRK13944        137 L--EKHAPFDAIIVTAAAST------IPSALVRQLKDGG  167 (205)
T ss_pred             C--ccCCCccEEEEccCcch------hhHHHHHhcCcCc
Confidence            1  12368999999766543      3357888999999

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.33  E-value=1.4e-11  Score=104.80  Aligned_cols=103  Identities=22%  Similarity=0.402  Sum_probs=80.2

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...++.++||||||.|..++.||+.  +..|+++|.|+.+++.+++.++..++     .+++...|......   .+.||
T Consensus        27 ~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l-----~i~~~~~Dl~~~~~---~~~yD   96 (192)
T PF03848_consen   27 PLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL-----DIRTRVADLNDFDF---PEEYD   96 (192)
T ss_dssp             TTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT------TEEEEE-BGCCBS----TTTEE
T ss_pred             hhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc-----eeEEEEecchhccc---cCCcC
Confidence            4456789999999999999999997  77999999999999999988888777     36777777654432   35799


Q ss_pred             EEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          211 VIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       211 vIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      +|++.-++++  .+.++.+++.++..++|||  ..++
T Consensus        97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG--~~li  131 (192)
T PF03848_consen   97 FIVSTVVFMFLQRELRPQIIENMKAATKPGG--YNLI  131 (192)
T ss_dssp             EEEEESSGGGS-GGGHHHHHHHHHHTEEEEE--EEEE
T ss_pred             EEEEEEEeccCCHHHHHHHHHHHHhhcCCcE--EEEE
Confidence            9998665554  6678899999999999999  4444

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.33  E-value=2.4e-11  Score=106.92  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=81.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ..+++|||+|||+|..+..+++..+..+|+++|.++.+++.++.+...        ++.+...+...  .+...++||+|
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--------~~~~~~~d~~~--~~~~~~~fD~v  102 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE--------NVQFICGDAEK--LPLEDSSFDLI  102 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC--------CCeEEecchhh--CCCCCCceeEE
Confidence            456799999999999999999887777899999999999988876431        23444444432  23345789999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +++.++++..+...++..+.++|+++|  .+++..
T Consensus       103 i~~~~l~~~~~~~~~l~~~~~~L~~~G--~l~~~~  135 (240)
T TIGR02072       103 VSNLALQWCDDLSQALSELARVLKPGG--LLAFST  135 (240)
T ss_pred             EEhhhhhhccCHHHHHHHHHHHcCCCc--EEEEEe
Confidence            999999999899999999999999999  455443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.32  E-value=2.8e-12  Score=98.29  Aligned_cols=95  Identities=22%  Similarity=0.345  Sum_probs=71.4

Q ss_pred             EEEeCCCCChhhHHHHHhc---CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          138 VIELGSGYGLAGLVIAATT---EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       138 VLELG~GtG~~~l~la~~~---~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      |||+|||+|.....++..+   +..+++++|++++|++.++++....+.     ++++...|..+  .+...++||+|++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-----~~~~~~~D~~~--l~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-----KVRFVQADARD--LPFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-----TSEEEESCTTC--HHHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-----ceEEEECCHhH--CcccCCCeeEEEE
Confidence            7999999999999998875   237999999999999999999877544     45666666543  2334579999999


Q ss_pred             cCC-CCC--cccHHHHHHHHHHHHhcCC
Q 021691          215 SDC-TFF--KEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       215 ~d~-ly~--~~~~~~ll~~l~~lLk~~G  239 (309)
                      +.. +++  .+....+++.+.++|+|+|
T Consensus        74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   74 SGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            554 433  5578899999999999986

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.32  E-value=4.3e-11  Score=111.09  Aligned_cols=132  Identities=15%  Similarity=0.071  Sum_probs=96.6

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..|+..+.......+|.+|||.|||+|.+.+.++..  +.+|+++|+++.|++.++.|++.++..    .+.+...|.. 
T Consensus       168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~----~i~~~~~D~~-  240 (329)
T TIGR01177       168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIE----DFFVKRGDAT-  240 (329)
T ss_pred             HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCC----CCeEEecchh-
Confidence            567777766556678899999999999998886654  679999999999999999999988773    2444333332 


Q ss_pred             CCCCCCCCCccEEEEcCCCCCc----------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC
Q 021691          200 DDFPYIVDTFDVIVASDCTFFK----------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL  266 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~----------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~  266 (309)
                       ..+...++||+|+++ +.|..          .....+++.+.++|++||  .+++..+...    .+.+.++++||
T Consensus       241 -~l~~~~~~~D~Iv~d-PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG--~lv~~~~~~~----~~~~~~~~~g~  309 (329)
T TIGR01177       241 -KLPLSSESVDAIATD-PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEG--WIVYAVPTRI----DLESLAEDAFR  309 (329)
T ss_pred             -cCCcccCCCCEEEEC-CCCcCcccccCCchHHHHHHHHHHHHHHccCCc--EEEEEEcCCC----CHHHHHhhcCc
Confidence             233335789999995 44432          225789999999999999  5555555442    24456788888

This family is found exclusively in the Archaea.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.32  E-value=5.4e-11  Score=112.36  Aligned_cols=137  Identities=15%  Similarity=0.125  Sum_probs=96.9

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      ..+.....+.+|.+|||+|||+|.+++.+++..+ .+|+++|.++++++.+++++.  +.     .+++...++..    
T Consensus       157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~--~l-----~v~~~~~D~~~----  224 (383)
T PRK11705        157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCA--GL-----PVEIRLQDYRD----  224 (383)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc--cC-----eEEEEECchhh----
Confidence            3444555667889999999999999998888654 599999999999999998873  22     24444444432    


Q ss_pred             CCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------------CchHHHHHHHH
Q 021691          204 YIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR--------------------GDSLDKFLEEI  261 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------~~~~~~f~~~~  261 (309)
                       ..++||.|++..++++.  ...+.+++.+.++|+|||  .+++.....                    -.+...+.+. 
T Consensus       225 -l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG--~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~-  300 (383)
T PRK11705        225 -LNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDG--LFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQA-  300 (383)
T ss_pred             -cCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCc--EEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHH-
Confidence             24689999998888775  456789999999999999  454433110                    0123444444 


Q ss_pred             HhCCCeEEEEeccCc
Q 021691          262 EGNHLHFSIIENYNA  276 (309)
Q Consensus       262 ~~~G~~~~~~~~~~~  276 (309)
                      .+.||.+..++.+..
T Consensus       301 ~~~~~~v~d~~~~~~  315 (383)
T PRK11705        301 SEGLFVMEDWHNFGA  315 (383)
T ss_pred             HHCCcEEEEEecChh
Confidence            345888887766544

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.31  E-value=1e-10  Score=107.50  Aligned_cols=114  Identities=14%  Similarity=0.235  Sum_probs=88.7

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      ..+.......++.+|||+|||+|..++.+++.++..+++++|. |.+++.+++|+...++.   .++++...|...... 
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~---~rv~~~~~d~~~~~~-  213 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA---DRMRGIAVDIYKESY-  213 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc---ceEEEEecCccCCCC-
Confidence            3344444555678999999999999999999988889999996 89999999999988873   456776665443221 


Q ss_pred             CCCCCccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          204 YIVDTFDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                         +.+|+|+.+.++|+..+  ...+++.+++.|+|||  .+++..
T Consensus       214 ---~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG--~l~i~d  254 (306)
T TIGR02716       214 ---PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGG--RLLILD  254 (306)
T ss_pred             ---CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCC--EEEEEE
Confidence               24799999898886543  4679999999999999  566654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.31  E-value=5.8e-11  Score=104.26  Aligned_cols=133  Identities=17%  Similarity=0.210  Sum_probs=90.6

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..+++.  ..+|+++|.++.+++.++++....+..   .++.+...++.     ...++||+
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~---~~i~~~~~d~~-----~~~~~fD~  130 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLA---GNITFEVGDLE-----SLLGRFDT  130 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCc---cCcEEEEcCch-----hccCCcCE
Confidence            346789999999999999998876  357999999999999999998776652   34555555432     23468999


Q ss_pred             EEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEeecC-----------------------CchHHHHHHHHHhCCC
Q 021691          212 IVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFSPKR-----------------------GDSLDKFLEEIEGNHL  266 (309)
Q Consensus       212 Ii~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------~~~~~~f~~~~~~~G~  266 (309)
                      |++.+++++  .+....+++.+.++++. +  .++.+.+..                       ..+..++.+.++++||
T Consensus       131 v~~~~~l~~~~~~~~~~~l~~l~~~~~~-~--~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  207 (230)
T PRK07580        131 VVCLDVLIHYPQEDAARMLAHLASLTRG-S--LIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGF  207 (230)
T ss_pred             EEEcchhhcCCHHHHHHHHHHHHhhcCC-e--EEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCC
Confidence            999998855  33455666666665532 2  233332210                       0123456777888888


Q ss_pred             eEEEEeccCch
Q 021691          267 HFSIIENYNAE  277 (309)
Q Consensus       267 ~~~~~~~~~~~  277 (309)
                      .+..+......
T Consensus       208 ~~~~~~~~~~~  218 (230)
T PRK07580        208 KVVRTERISSG  218 (230)
T ss_pred             ceEeeeeccch
Confidence            87776655444

>PRK06922 hypothetical protein; Provisional

Probab=99.30  E-value=2e-11  Score=119.84  Aligned_cols=110  Identities=17%  Similarity=0.167  Sum_probs=82.9

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...++.+|||+|||+|..+..+++..+..+|+++|.++.|++.++++...++.     ++.+...|.........+++||
T Consensus       415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-----~ie~I~gDa~dLp~~fedeSFD  489 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-----SWNVIKGDAINLSSSFEKESVD  489 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----CeEEEEcchHhCccccCCCCEE
Confidence            34578899999999999998888888888999999999999999988765543     2333333322211113457899


Q ss_pred             EEEEcCCCCC-------------cccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          211 VIVASDCTFF-------------KEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       211 vIi~~d~ly~-------------~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +|+++.++++             ......+++.+.++|||||  .+++..
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGG--rLII~D  537 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGG--RIIIRD  537 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCc--EEEEEe
Confidence            9999877764             2456889999999999999  666654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.30  E-value=6.5e-11  Score=102.86  Aligned_cols=126  Identities=13%  Similarity=0.118  Sum_probs=87.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC------CC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF------PY  204 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~------~~  204 (309)
                      +.+|.+|||||||+|..+..+++..+. .+|+++|+++ |          +..    ..+.+...|......      ..
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~----~~v~~i~~D~~~~~~~~~i~~~~  113 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI----VGVDFLQGDFRDELVLKALLERV  113 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC----CCcEEEecCCCChHHHHHHHHHh
Confidence            457889999999999999988887643 5999999988 1          112    235666666654320      12


Q ss_pred             CCCCccEEEEcCCCCCccc-----------HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691          205 IVDTFDVIVASDCTFFKEF-----------HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~-----------~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      ...+||+|+++.+.+....           ...+++.+.++|+|||   .+++...+...+.+|+..+++.-..++....
T Consensus       114 ~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG---~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp  190 (209)
T PRK11188        114 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGG---SFVVKVFQGEGFDEYLREIRSLFTKVKVRKP  190 (209)
T ss_pred             CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCC---EEEEEEecCcCHHHHHHHHHhCceEEEEECC
Confidence            3568999999665554321           2568899999999999   3444455667778888888776556665554


Q ss_pred             cC
Q 021691          274 YN  275 (309)
Q Consensus       274 ~~  275 (309)
                      ..
T Consensus       191 ~s  192 (209)
T PRK11188        191 DS  192 (209)
T ss_pred             cc
Confidence            33

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.30  E-value=4.5e-11  Score=104.29  Aligned_cols=107  Identities=17%  Similarity=0.165  Sum_probs=79.1

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      .+...+.+...+.++.+|||+|||+|..+..+++..+ ..+|+++|.++++++.+++|+..+++    .++++...|...
T Consensus        64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~----~~v~~~~~d~~~  139 (215)
T TIGR00080        64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL----DNVIVIVGDGTQ  139 (215)
T ss_pred             HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCeEEEECCccc
Confidence            3334454445567889999999999999999988754 35799999999999999999998876    246665555432


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ..  ....+||+|++..+.      ..+.+.+.+.|++||
T Consensus       140 ~~--~~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG  171 (215)
T TIGR00080       140 GW--EPLAPYDRIYVTAAG------PKIPEALIDQLKEGG  171 (215)
T ss_pred             CC--cccCCCCEEEEcCCc------ccccHHHHHhcCcCc
Confidence            21  123589999986543      234466788999999

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.30  E-value=3.4e-11  Score=115.81  Aligned_cols=151  Identities=20%  Similarity=0.139  Sum_probs=106.6

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      +..|.+.+.......++.+|||+|||+|.+++.+|+.  +.+|+++|.++.+++.+++|+..|++.    ++++...|+.
T Consensus       277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~----nv~~~~~d~~  350 (431)
T TIGR00479       277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIA----NVEFLAGTLE  350 (431)
T ss_pred             HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCC----ceEEEeCCHH
Confidence            3445555555444556789999999999999999886  569999999999999999999999873    5666666553


Q ss_pred             CCC--CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCc
Q 021691          199 QDD--FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       199 ~~~--~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      ...  ......+||+|++ |+.+. .....+++.+.+ +++++   +++.++ .+.++..-++.+.+.|+.++.+..+|.
T Consensus       351 ~~l~~~~~~~~~~D~vi~-dPPr~-G~~~~~l~~l~~-l~~~~---ivyvsc-~p~tlard~~~l~~~gy~~~~~~~~Dm  423 (431)
T TIGR00479       351 TVLPKQPWAGQIPDVLLL-DPPRK-GCAAEVLRTIIE-LKPER---IVYVSC-NPATLARDLEFLCKEGYGITWVQPVDM  423 (431)
T ss_pred             HHHHHHHhcCCCCCEEEE-CcCCC-CCCHHHHHHHHh-cCCCE---EEEEcC-CHHHHHHHHHHHHHCCeeEEEEEEecc
Confidence            211  1112356999998 55543 224556666554 55654   444443 467888888888899999998888777


Q ss_pred             hhhhhh
Q 021691          277 EIWKRH  282 (309)
Q Consensus       277 ~~~~~~  282 (309)
                      -+...|
T Consensus       424 FP~T~H  429 (431)
T TIGR00479       424 FPHTAH  429 (431)
T ss_pred             CCCCCC
Confidence            555443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK05785 hypothetical protein; Provisional

Probab=99.29  E-value=3e-11  Score=106.26  Aligned_cols=90  Identities=16%  Similarity=0.193  Sum_probs=72.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||||..+..+++.. +.+|+++|.+++|++.++.+.   .         ....+.  ...+..+++||+|+
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~---~---------~~~~d~--~~lp~~d~sfD~v~  115 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD---D---------KVVGSF--EALPFRDKSFDVVM  115 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc---c---------eEEech--hhCCCCCCCEEEEE
Confidence            36799999999999999988875 469999999999999987641   0         111222  23455678999999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcC
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKV  238 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~  238 (309)
                      ++.++++..+.+.+++++.++|+|.
T Consensus       116 ~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        116 SSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             ecChhhccCCHHHHHHHHHHHhcCc
Confidence            9999999999999999999999983

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.29  E-value=9.9e-11  Score=101.32  Aligned_cols=92  Identities=11%  Similarity=0.105  Sum_probs=67.1

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..++...++.+|+++|+|++|++.++++..         .+.+...+...   +..+++||+
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~---~~~~~sfD~  108 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD---PFKDNFFDL  108 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC---CCCCCCEEE
Confidence            346789999999999999998887677899999999999999987642         12233333222   345678999


Q ss_pred             EEEcCCCCCcc--cHHHHHHHHHHHH
Q 021691          212 IVASDCTFFKE--FHKDLARIIKFLL  235 (309)
Q Consensus       212 Ii~~d~ly~~~--~~~~ll~~l~~lL  235 (309)
                      |++..+++|..  ....+++.+.+++
T Consensus       109 V~~~~vL~hl~p~~~~~~l~el~r~~  134 (204)
T TIGR03587       109 VLTKGVLIHINPDNLPTAYRELYRCS  134 (204)
T ss_pred             EEECChhhhCCHHHHHHHHHHHHhhc
Confidence            99999998753  3445555555554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.29  E-value=6.6e-11  Score=103.09  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=80.2

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      +..+..++.+...+.+|.+|||+|||+|..+..+++..+. .+|+++|.++++++.+++|+..++.    .++.+...|.
T Consensus        61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~----~~v~~~~gd~  136 (212)
T PRK13942         61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY----DNVEVIVGDG  136 (212)
T ss_pred             cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCeEEEECCc
Confidence            3445555555556678999999999999999988887543 6999999999999999999998876    2456555543


Q ss_pred             CCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          198 NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       198 ~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ...  .....+||+|++.....      .+...+.+.|++||
T Consensus       137 ~~~--~~~~~~fD~I~~~~~~~------~~~~~l~~~LkpgG  170 (212)
T PRK13942        137 TLG--YEENAPYDRIYVTAAGP------DIPKPLIEQLKDGG  170 (212)
T ss_pred             ccC--CCcCCCcCEEEECCCcc------cchHHHHHhhCCCc
Confidence            221  12246899999864432      23456778899999

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.26  E-value=5.1e-11  Score=102.48  Aligned_cols=108  Identities=12%  Similarity=0.122  Sum_probs=78.0

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ..+.+|||||||+|.+++.++.. ++.+|+++|.++.+++.+++|++.++..    ++.+..-|+.... .....+||+|
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~a~~~a~~Nl~~~~~~----~v~~~~~D~~~~l-~~~~~~fDlV  125 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVAQQLIKNLATLKAG----NARVVNTNALSFL-AQPGTPHNVV  125 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEEchHHHHH-hhcCCCceEE
Confidence            46789999999999999965444 4679999999999999999999999863    4565555543211 1123469999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHH--HhcCCCeEEEEEeecC
Q 021691          213 VASDCTFFKEFHKDLARIIKFL--LKKVGPSEALFFSPKR  250 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~l--Lk~~G~~~~ii~~~~r  250 (309)
                      ++ |+.|.....+.+++.+...  |++++   +++..+..
T Consensus       126 ~~-DPPy~~g~~~~~l~~l~~~~~l~~~~---iv~ve~~~  161 (199)
T PRK10909        126 FV-DPPFRKGLLEETINLLEDNGWLADEA---LIYVESEV  161 (199)
T ss_pred             EE-CCCCCCChHHHHHHHHHHCCCcCCCc---EEEEEecC
Confidence            99 6667777777777777653  56666   55544443

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.25  E-value=8.8e-11  Score=110.78  Aligned_cols=136  Identities=11%  Similarity=0.083  Sum_probs=97.2

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ..+++|||||||+|.+++.+|..  +.+|+++|+++.+++.+++|++.|++.    ++.+...|..... .....+||+|
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~----~~~~~~~d~~~~~-~~~~~~~D~v  304 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLD----NLSFAALDSAKFA-TAQMSAPELV  304 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCC----cEEEEECCHHHHH-HhcCCCCCEE
Confidence            45789999999999999998864  579999999999999999999999873    4666555543211 1112459999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCchhhhhhhc
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQM  284 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~~~~~~~~  284 (309)
                      +. |+.+. .....+++.+.+ ++|++   +++.++ ++.|+.+-+..+  .||.++.+..+|.-++..|-+
T Consensus       305 i~-DPPr~-G~~~~~l~~l~~-~~p~~---ivyvsc-~p~TlaRDl~~L--~gy~l~~~~~~DmFPqT~HvE  367 (374)
T TIGR02085       305 LV-NPPRR-GIGKELCDYLSQ-MAPKF---ILYSSC-NAQTMAKDIAEL--SGYQIERVQLFDMFPHTSHYE  367 (374)
T ss_pred             EE-CCCCC-CCcHHHHHHHHh-cCCCe---EEEEEe-CHHHHHHHHHHh--cCceEEEEEEeccCCCCCcEE
Confidence            99 66664 445666666654 45544   444443 556777777777  689999998888766655533

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.25  E-value=6.4e-11  Score=109.27  Aligned_cols=136  Identities=13%  Similarity=0.129  Sum_probs=91.0

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|.+++.+|..  +.+|+++|.++.+++.+++|++.|++.    ++++...|..... .....+||+|
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~----~v~~~~~D~~~~~-~~~~~~~D~V  244 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLT----NVQFQALDSTQFA-TAQGEVPDLV  244 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEcCHHHHH-HhcCCCCeEE
Confidence            35789999999999999998885  579999999999999999999999872    4666655543211 1123469999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCchhhhhhhc
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQM  284 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~~~~~~~~  284 (309)
                      +...+ +. .....+++.+    ...+...+++.++ .+.++.+-++.+  .|+.++.+..+|.-++..|-+
T Consensus       245 v~dPP-r~-G~~~~~~~~l----~~~~~~~ivyvsc-~p~t~~rd~~~l--~~y~~~~~~~~DmFP~T~HvE  307 (315)
T PRK03522        245 LVNPP-RR-GIGKELCDYL----SQMAPRFILYSSC-NAQTMAKDLAHL--PGYRIERVQLFDMFPHTAHYE  307 (315)
T ss_pred             EECCC-CC-CccHHHHHHH----HHcCCCeEEEEEC-CcccchhHHhhc--cCcEEEEEEEeccCCCCCeEE
Confidence            99544 32 2223333333    3333334555444 445555545555  589999888888766655543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=1.8e-10  Score=110.60  Aligned_cols=147  Identities=14%  Similarity=0.078  Sum_probs=96.0

Q ss_pred             CceeecccHHH-HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCc
Q 021691          111 GLVCHWPSEDV-LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTT  189 (309)
Q Consensus       111 G~~~~W~sa~~-La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~  189 (309)
                      |...+-+.+-. .+..+    ...+|.+|||+|||+|..++.+++..++.+|+++|.++.+++.+++|++.++..     
T Consensus       224 G~~~iQd~~s~~~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-----  294 (427)
T PRK10901        224 GWVSVQDAAAQLAATLL----APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-----  294 (427)
T ss_pred             ceEEEECHHHHHHHHHc----CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----
Confidence            44434444433 33333    345789999999999999999988766579999999999999999999998762     


Q ss_pred             eEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc---------------c-------cHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          190 VKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK---------------E-------FHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       190 v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~---------------~-------~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +.+...|...........+||.|++..+....               .       ....++..+.++|+|||  .+++++
T Consensus       295 ~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG--~lvyst  372 (427)
T PRK10901        295 ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGG--TLLYAT  372 (427)
T ss_pred             eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEe
Confidence            34444443321111124679999984432211               1       12468899999999999  555554


Q ss_pred             e--cCCchHHHHHHHHHhC-CCeE
Q 021691          248 P--KRGDSLDKFLEEIEGN-HLHF  268 (309)
Q Consensus       248 ~--~r~~~~~~f~~~~~~~-G~~~  268 (309)
                      +  .+.+..+.....++++ ++.+
T Consensus       373 cs~~~~Ene~~v~~~l~~~~~~~~  396 (427)
T PRK10901        373 CSILPEENEQQIKAFLARHPDAEL  396 (427)
T ss_pred             CCCChhhCHHHHHHHHHhCCCCEE
Confidence            3  2344444455555554 4543

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.24  E-value=5.7e-11  Score=100.29  Aligned_cols=126  Identities=15%  Similarity=0.211  Sum_probs=86.4

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      -.++||+|||.|.++..||.+  +.+++++|+++.+++.+++++...      .+|.+...+....   .+.++||+|+.
T Consensus        44 y~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~------~~V~~~~~dvp~~---~P~~~FDLIV~  112 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL------PHVEWIQADVPEF---WPEGRFDLIVL  112 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT------SS-EEEEEE
T ss_pred             cceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC------CCeEEEECcCCCC---CCCCCeeEEEE
Confidence            358999999999999999988  468999999999999999886532      3567776655332   35689999999


Q ss_pred             cCCCCCccc---HHHHHHHHHHHHhcCCCeEEEEEeecC--------CchHHHHHHHHHhCCCeEEEEec
Q 021691          215 SDCTFFKEF---HKDLARIIKFLLKKVGPSEALFFSPKR--------GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       215 ~d~ly~~~~---~~~ll~~l~~lLk~~G~~~~ii~~~~r--------~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      +.++|+..+   ...++..+...|+|||  .+++.+.+.        ....+...+++.+.-..++.++.
T Consensus       113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG--~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~  180 (201)
T PF05401_consen  113 SEVLYYLDDAEDLRAALDRLVAALAPGG--HLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC  180 (201)
T ss_dssp             ES-GGGSSSHHHHHHHHHHHHHTEEEEE--EEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE
T ss_pred             ehHhHcCCCHHHHHHHHHHHHHHhCCCC--EEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE
Confidence            999999754   5668888889999999  566655321        12234556666666556666554

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.23  E-value=1.2e-10  Score=113.28  Aligned_cols=129  Identities=20%  Similarity=0.141  Sum_probs=91.6

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...++++|||+|||+|..+..+++.  ..+|+++|.++.|++.++.   .++.   ..++.+...+......+...++||
T Consensus        34 ~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~---~~~~---~~~i~~~~~d~~~~~~~~~~~~fD  105 (475)
T PLN02336         34 PPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNES---INGH---YKNVKFMCADVTSPDLNISDGSVD  105 (475)
T ss_pred             CccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHH---Hhcc---CCceEEEEecccccccCCCCCCEE
Confidence            3446789999999999999999886  4699999999999987654   2222   134566666654333444567899


Q ss_pred             EEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeec-----------CC---chHHHHHHHHHhCCCeEE
Q 021691          211 VIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPK-----------RG---DSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       211 vIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~-----------r~---~~~~~f~~~~~~~G~~~~  269 (309)
                      +|++..++++..+  ...+++.+.++|+|+|  .+++....           .+   .....+.+.+.++|+...
T Consensus       106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG--~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  178 (475)
T PLN02336        106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGG--YIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE  178 (475)
T ss_pred             EEehhhhHHhCCHHHHHHHHHHHHHhcCCCe--EEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence            9999998887654  6789999999999999  44443210           11   124556667778776543

>PLN02672 methionine S-methyltransferase

Probab=99.23  E-value=3.3e-10  Score=117.72  Aligned_cols=150  Identities=18%  Similarity=0.030  Sum_probs=102.9

Q ss_pred             cccHHHHHHHHhhCc-CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC---------
Q 021691          116 WPSEDVLAFFSLSHA-DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF---------  185 (309)
Q Consensus       116 W~sa~~La~~l~~~~-~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~---------  185 (309)
                      -|-++.|.+.+...+ ..+++++|||||||+|.+++.+++.++..+|+++|+|+++++.+++|+..|++..         
T Consensus        99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~  178 (1082)
T PLN02672         99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE  178 (1082)
T ss_pred             chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence            455667777754433 2346789999999999999999998877899999999999999999999986530         


Q ss_pred             ---CCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcc--------------------------------------cH
Q 021691          186 ---GGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKE--------------------------------------FH  224 (309)
Q Consensus       186 ---~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------------------~~  224 (309)
                         ...++.+..-||.... .....+||+||++.+.-...                                      .+
T Consensus       179 ~~~l~~rV~f~~sDl~~~~-~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~y  257 (1082)
T PLN02672        179 GKTLLDRVEFYESDLLGYC-RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLI  257 (1082)
T ss_pred             cccccccEEEEECchhhhc-cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHH
Confidence               1135777777775432 11123699999976531100                                      12


Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH-HHHHhCCCeEEE
Q 021691          225 KDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL-EEIEGNHLHFSI  270 (309)
Q Consensus       225 ~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~-~~~~~~G~~~~~  270 (309)
                      ..++....++|+++|   .+++..... .-+... +.+++.||....
T Consensus       258 r~i~~~a~~~L~pgG---~l~lEiG~~-q~~~v~~~l~~~~gf~~~~  300 (1082)
T PLN02672        258 ARAVEEGISVIKPMG---IMIFNMGGR-PGQAVCERLFERRGFRITK  300 (1082)
T ss_pred             HHHHHHHHHhccCCC---EEEEEECcc-HHHHHHHHHHHHCCCCeeE
Confidence            557778888999999   444443332 223455 477778887643

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=2.1e-10  Score=100.12  Aligned_cols=130  Identities=14%  Similarity=0.109  Sum_probs=99.9

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      |+.....+.+|.+|||.|.|+|.++.++|...+. ++|+..|+.++..+.|++|++..++.   .++....-|..+..  
T Consensus        85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~---d~v~~~~~Dv~~~~--  159 (256)
T COG2519          85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG---DRVTLKLGDVREGI--  159 (256)
T ss_pred             HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---cceEEEeccccccc--
Confidence            3444567889999999999999999999975544 89999999999999999999998774   23555444333222  


Q ss_pred             CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                       ....||.|+.     +..++...+..+.++|+|||  .++++.|.- +..++..+.+++.||..
T Consensus       160 -~~~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg--~~~~y~P~v-eQv~kt~~~l~~~g~~~  215 (256)
T COG2519         160 -DEEDVDAVFL-----DLPDPWNVLEHVSDALKPGG--VVVVYSPTV-EQVEKTVEALRERGFVD  215 (256)
T ss_pred             -cccccCEEEE-----cCCChHHHHHHHHHHhCCCc--EEEEEcCCH-HHHHHHHHHHHhcCccc
Confidence             2348999998     35678899999999999999  677776654 34466777888888764

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.22  E-value=2.2e-10  Score=107.14  Aligned_cols=108  Identities=12%  Similarity=0.026  Sum_probs=84.2

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      .+..+||||||+|...+.+|+..+...++|+|+++.+++.+.+++..+++    .++.+...|.........++++|.|+
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL----~NV~~i~~DA~~ll~~~~~~s~D~I~  197 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL----KNLLIINYDARLLLELLPSNSVEKIF  197 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHHhhhhCCCCceeEEE
Confidence            46799999999999999999998888999999999999999999998887    35776666543222234467899999


Q ss_pred             EcCCCCCccc------HHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          214 ASDCTFFKEF------HKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       214 ~~d~ly~~~~------~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ++-+.-+...      .+.+++.+.++|++||  .+.+.+
T Consensus       198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG--~l~l~T  235 (390)
T PRK14121        198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGG--TLELRT  235 (390)
T ss_pred             EeCCCCccccchhhccHHHHHHHHHHHcCCCc--EEEEEE
Confidence            8654433222      2689999999999999  444444

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.19  E-value=1.7e-10  Score=97.91  Aligned_cols=97  Identities=16%  Similarity=0.152  Sum_probs=78.5

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      .+-+-.+|.|||||+|..+-.++.++|.+.++|+|.|++|++.++....         ++++...|...   -.+...+|
T Consensus        27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp---------~~~f~~aDl~~---w~p~~~~d   94 (257)
T COG4106          27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---------DATFEEADLRT---WKPEQPTD   94 (257)
T ss_pred             CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC---------CCceecccHhh---cCCCCccc
Confidence            3445679999999999999999999999999999999999999976532         22222222111   12346799


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +++++-++++..++..++..+...|.|||
T Consensus        95 llfaNAvlqWlpdH~~ll~rL~~~L~Pgg  123 (257)
T COG4106          95 LLFANAVLQWLPDHPELLPRLVSQLAPGG  123 (257)
T ss_pred             hhhhhhhhhhccccHHHHHHHHHhhCCCc
Confidence            99999999999999999999999999999

>PTZ00146 fibrillarin; Provisional

Probab=99.18  E-value=1.5e-09  Score=97.88  Aligned_cols=150  Identities=13%  Similarity=0.106  Sum_probs=95.5

Q ss_pred             ceeecccHH-HHHHHHhh---CcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691          112 LVCHWPSED-VLAFFSLS---HADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFG  186 (309)
Q Consensus       112 ~~~~W~sa~-~La~~l~~---~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~  186 (309)
                      ++ +|+.-. .||.-++.   ...+.++.+|||||||+|..+..+|...+ ..+|+++|.++.+++.+...+...     
T Consensus       107 yR-~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----  180 (293)
T PTZ00146        107 YR-VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----  180 (293)
T ss_pred             ee-eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----
Confidence            66 998643 36655543   23456889999999999999999998875 358999999998776665543321     


Q ss_pred             CCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----CchHHHH---
Q 021691          187 GTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----GDSLDKF---  257 (309)
Q Consensus       187 ~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----~~~~~~f---  257 (309)
                       .++....-|..... .......||+|++ |+. .+.....++..++++||++|  .+++.-..+     +...+.|   
T Consensus       181 -~NI~~I~~Da~~p~~y~~~~~~vDvV~~-Dva-~pdq~~il~~na~r~LKpGG--~~vI~ika~~id~g~~pe~~f~~e  255 (293)
T PTZ00146        181 -PNIVPIIEDARYPQKYRMLVPMVDVIFA-DVA-QPDQARIVALNAQYFLKNGG--HFIISIKANCIDSTAKPEVVFASE  255 (293)
T ss_pred             -CCCEEEECCccChhhhhcccCCCCEEEE-eCC-CcchHHHHHHHHHHhccCCC--EEEEEEeccccccCCCHHHHHHHH
Confidence             13344333332211 1123357999999 443 35555567778999999999  455532211     1111222   


Q ss_pred             HHHHHhCCCeEEEEe
Q 021691          258 LEEIEGNHLHFSIIE  272 (309)
Q Consensus       258 ~~~~~~~G~~~~~~~  272 (309)
                      .+.+++.||+.....
T Consensus       256 v~~L~~~GF~~~e~v  270 (293)
T PTZ00146        256 VQKLKKEGLKPKEQL  270 (293)
T ss_pred             HHHHHHcCCceEEEE
Confidence            466888999865433

>PRK06202 hypothetical protein; Provisional

Probab=99.18  E-value=3.7e-10  Score=99.62  Aligned_cols=106  Identities=18%  Similarity=0.137  Sum_probs=74.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~  208 (309)
                      .++.+|||||||+|.++..+++..    +..+|+++|.+++|++.++++...++.       .+...+-+  ..+..+++
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~~~~--~l~~~~~~  129 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV-------TFRQAVSD--ELVAEGER  129 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC-------eEEEEecc--cccccCCC
Confidence            456799999999999988887642    235899999999999999887654433       22222211  11223568


Q ss_pred             ccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecCC
Q 021691          209 FDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKRG  251 (309)
Q Consensus       209 fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r~  251 (309)
                      ||+|+++.++++..+  ...+++.+.++++  |  .+++....++
T Consensus       130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~--~~~i~dl~~~  170 (232)
T PRK06202        130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--R--LVLHNDLIRS  170 (232)
T ss_pred             ccEEEECCeeecCChHHHHHHHHHHHHhcC--e--eEEEeccccC
Confidence            999999999998665  4568888888886  3  3555554443

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.17  E-value=8e-11  Score=106.99  Aligned_cols=107  Identities=20%  Similarity=0.358  Sum_probs=83.1

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      +.++.+++++|.|||+|||||.+++.+|+. |+.+|+++|.+ ++.+.+++.+..|++.   ..+++......+-..|  
T Consensus        52 i~~n~~lf~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S-~ia~~a~~iv~~N~~~---~ii~vi~gkvEdi~LP--  124 (346)
T KOG1499|consen   52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEAS-SIADFARKIVKDNGLE---DVITVIKGKVEDIELP--  124 (346)
T ss_pred             HhcchhhcCCCEEEEcCCCccHHHHHHHHh-CcceEEEEech-HHHHHHHHHHHhcCcc---ceEEEeecceEEEecC--
Confidence            456778999999999999999999998775 78999999955 5669999999999985   3455555444333333  


Q ss_pred             CCCccEEEEcC---CCCCcccHHHHHHHHHHHHhcCC
Q 021691          206 VDTFDVIVASD---CTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       206 ~~~fDvIi~~d---~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .++.|+|++--   ++++...+...+-.-.+.|++||
T Consensus       125 ~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G  161 (346)
T KOG1499|consen  125 VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGG  161 (346)
T ss_pred             ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCc
Confidence            57899999843   55556667777777789999999

>PHA03411 putative methyltransferase; Provisional

Probab=99.16  E-value=4.7e-10  Score=100.04  Aligned_cols=124  Identities=14%  Similarity=0.119  Sum_probs=85.1

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      .+.+|||+|||+|.+++.+++..++.+|+++|+++.|++.+++|..         ++.+...|....   ....+||+|+
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~---------~v~~v~~D~~e~---~~~~kFDlII  131 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP---------EAEWITSDVFEF---ESNEKFDVVI  131 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc---------CCEEEECchhhh---cccCCCcEEE
Confidence            3568999999999999988887656799999999999999988632         122222222111   1235799999


Q ss_pred             EcCCCCCccc--------------------HHHHHHHHHHHHhcCCCeEEEEEe-ec--CCchHHHHHHHHHhCCCeEE
Q 021691          214 ASDCTFFKEF--------------------HKDLARIIKFLLKKVGPSEALFFS-PK--RGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       214 ~~d~ly~~~~--------------------~~~ll~~l~~lLk~~G~~~~ii~~-~~--r~~~~~~f~~~~~~~G~~~~  269 (309)
                      +++++++...                    +..++.....+|+|+|...+++.+ +.  ..-..+++.+.+++.||...
T Consensus       132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~  210 (279)
T PHA03411        132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY  210 (279)
T ss_pred             EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence            9888776211                    356667778888999833323222 11  23345788999999999764

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.16  E-value=1.2e-09  Score=100.21  Aligned_cols=86  Identities=17%  Similarity=0.139  Sum_probs=62.6

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc-cCCCCCCceEEEEe-eCCC--CCCCCCCCCc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN-SGAFGGTTVKSMTL-HWNQ--DDFPYIVDTF  209 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l-~w~~--~~~~~~~~~f  209 (309)
                      .+.+|||||||+|.+...++....+.+++++|+++.+++.+++|++.| ++.   .++.+... +-..  .......+.|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~---~~I~~~~~~~~~~i~~~i~~~~~~f  190 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN---GAIRLRLQKDSKAIFKGIIHKNERF  190 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc---CcEEEEEccchhhhhhcccccCCce
Confidence            457999999999977777777666789999999999999999999999 673   34544321 1110  0111234689


Q ss_pred             cEEEEcCCCCCcc
Q 021691          210 DVIVASDCTFFKE  222 (309)
Q Consensus       210 DvIi~~d~ly~~~  222 (309)
                      |+|+|+.++|...
T Consensus       191 DlivcNPPf~~s~  203 (321)
T PRK11727        191 DATLCNPPFHASA  203 (321)
T ss_pred             EEEEeCCCCcCcc
Confidence            9999988877643

>PLN03075 nicotianamine synthase; Provisional

Probab=99.16  E-value=5.9e-10  Score=100.78  Aligned_cols=107  Identities=17%  Similarity=0.078  Sum_probs=80.9

Q ss_pred             CCCeEEEeCCCCC-hhhHHHH-HhcCCcEEEEEcCCHHHHHHHHHHHHh-ccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          134 RSKRVIELGSGYG-LAGLVIA-ATTEALEVVISDGNPQVVDYIQRNVDA-NSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       134 ~g~~VLELG~GtG-~~~l~la-~~~~~~~V~~tD~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ++++|+|+|||.| +.++.++ ...+..+++++|.++++++.+++++.. .++   ..++++...|..+..  ...+.||
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL---~~rV~F~~~Da~~~~--~~l~~FD  197 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL---SKRMFFHTADVMDVT--ESLKEYD  197 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc---cCCcEEEECchhhcc--cccCCcC
Confidence            7799999999965 5555555 456778999999999999999999965 555   346777777654321  1236799


Q ss_pred             EEEEcCCCCC-cccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          211 VIVASDCTFF-KEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       211 vIi~~d~ly~-~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +|+++-.+|+ .+....+++.+.+.|+|||  .+++-.
T Consensus       198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG--~Lvlr~  233 (296)
T PLN03075        198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGA--LLMLRS  233 (296)
T ss_pred             EEEEecccccccccHHHHHHHHHHhcCCCc--EEEEec
Confidence            9999844454 4889999999999999999  444433

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.16  E-value=7.4e-10  Score=96.35  Aligned_cols=104  Identities=17%  Similarity=0.132  Sum_probs=76.0

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +..++.......++.+|||+|||+|..+..+++..  .+|+++|.++++++.+++++..+++.    ++.+...+.... 
T Consensus        66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~-  138 (212)
T PRK00312         66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLH----NVSVRHGDGWKG-  138 (212)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCC----ceEEEECCcccC-
Confidence            33344444556678999999999999998887763  48999999999999999999988763    355555543221 


Q ss_pred             CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                       ....++||+|++..+.      ..+.+.+.+.|++||
T Consensus       139 -~~~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG  169 (212)
T PRK00312        139 -WPAYAPFDRILVTAAA------PEIPRALLEQLKEGG  169 (212)
T ss_pred             -CCcCCCcCEEEEccCc------hhhhHHHHHhcCCCc
Confidence             1123689999996543      233567789999999

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.16  E-value=2e-10  Score=101.45  Aligned_cols=111  Identities=14%  Similarity=0.048  Sum_probs=82.5

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      ++++.......++++|||+|||+|..++.+|+..+ +++|+++|.++++++.+++|++.+++.   .++++...+..+..
T Consensus        57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~---~~i~~~~gda~~~L  133 (234)
T PLN02781         57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD---HKINFIQSDALSAL  133 (234)
T ss_pred             HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEccHHHHH
Confidence            33333333445688999999999999888887654 579999999999999999999999884   45666655543221


Q ss_pred             C---C-CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          202 F---P-YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       202 ~---~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .   . ...++||+|+. |.-  ...+..++..+.++|++||
T Consensus       134 ~~l~~~~~~~~fD~Vfi-Da~--k~~y~~~~~~~~~ll~~GG  172 (234)
T PLN02781        134 DQLLNNDPKPEFDFAFV-DAD--KPNYVHFHEQLLKLVKVGG  172 (234)
T ss_pred             HHHHhCCCCCCCCEEEE-CCC--HHHHHHHHHHHHHhcCCCe
Confidence            0   0 11368999998 432  4567788999999999999

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.15  E-value=7.8e-10  Score=106.19  Aligned_cols=123  Identities=13%  Similarity=0.020  Sum_probs=84.5

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      .++..++..+    ...+|.+|||+|||+|..++.++...+.++|+++|.++.+++.+++|++.+++.   ..+.....+
T Consensus       225 ~~s~~~~~~L----~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~---~~v~~~~~d  297 (426)
T TIGR00563       225 ASAQWVATWL----APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT---IKAETKDGD  297 (426)
T ss_pred             HHHHHHHHHh----CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEeccc
Confidence            3455555544    345788999999999999999998877679999999999999999999998873   122223332


Q ss_pred             CCCCCCCCCCCCccEEEEcCC------CCCccc----------------HHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          197 WNQDDFPYIVDTFDVIVASDC------TFFKEF----------------HKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~------ly~~~~----------------~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ...........+||.|++..+      +...++                ...++..+.++|+|||  .++++++
T Consensus       298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG--~lvystc  369 (426)
T TIGR00563       298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGG--TLVYATC  369 (426)
T ss_pred             cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEEeC
Confidence            211111113467999997221      111111                3578899999999999  5666554

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.14  E-value=4.3e-10  Score=96.15  Aligned_cols=110  Identities=12%  Similarity=0.099  Sum_probs=76.6

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-CCC-Cc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY-IVD-TF  209 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~-~~~-~f  209 (309)
                      ...|++||||+||+|.+|+.++.+ ++.+|+++|.++.+++.+++|++.|+..   .++.+...|........ ... .|
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~---~~~~~~~~D~~~~l~~~~~~~~~~  122 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSG---EQAEVVRNSALRALKFLAKKPTFD  122 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCc---ccEEEEehhHHHHHHHhhccCCCc
Confidence            357899999999999999997775 6679999999999999999999999873   23444444331110001 112 35


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHH--HHhcCCCeEEEEEeec
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKF--LLKKVGPSEALFFSPK  249 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~--lLk~~G~~~~ii~~~~  249 (309)
                      |+|+. |+.|.....+.++..+..  +|+++|   +++....
T Consensus       123 dvv~~-DPPy~~~~~~~~l~~l~~~~~l~~~~---iiv~E~~  160 (189)
T TIGR00095       123 NVIYL-DPPFFNGALQALLELCENNWILEDTV---LIVVEED  160 (189)
T ss_pred             eEEEE-CcCCCCCcHHHHHHHHHHCCCCCCCe---EEEEEec
Confidence            66655 999987777777776644  566666   4554433

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK04457 spermidine synthase; Provisional

Probab=99.14  E-value=3.7e-10  Score=101.44  Aligned_cols=124  Identities=17%  Similarity=0.179  Sum_probs=86.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++++|||||||+|.++..+++..+..+|+++|+++++++.+++++..++.   ..++++...|..+. ......+||+|+
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~---~~rv~v~~~Da~~~-l~~~~~~yD~I~  141 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN---GERFEVIEADGAEY-IAVHRHSTDVIL  141 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC---CCceEEEECCHHHH-HHhCCCCCCEEE
Confidence            46899999999999999998888888999999999999999998765432   23555554443211 112235899999


Q ss_pred             EcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691          214 ASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN  264 (309)
Q Consensus       214 ~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~  264 (309)
                      + |.+....     ....+++.++++|+|+|  .+++-...+......+.+.+++.
T Consensus       142 ~-D~~~~~~~~~~l~t~efl~~~~~~L~pgG--vlvin~~~~~~~~~~~l~~l~~~  194 (262)
T PRK04457        142 V-DGFDGEGIIDALCTQPFFDDCRNALSSDG--IFVVNLWSRDKRYDRYLERLESS  194 (262)
T ss_pred             E-eCCCCCCCccccCcHHHHHHHHHhcCCCc--EEEEEcCCCchhHHHHHHHHHHh
Confidence            8 4432211     13689999999999999  44443333444455666666554

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.14  E-value=4.7e-10  Score=105.35  Aligned_cols=148  Identities=16%  Similarity=0.160  Sum_probs=99.9

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      +..|.+++...... .+.+||||+||+|.+++.+++.  +.+|+++|.++.+++.+++|+..|++.    ++.+...|..
T Consensus       192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~----~v~~~~~d~~  264 (362)
T PRK05031        192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGID----NVQIIRMSAE  264 (362)
T ss_pred             HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCC----cEEEEECCHH
Confidence            55566666554322 2357999999999999988876  569999999999999999999999873    4566555443


Q ss_pred             CCC--CCC------------CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691          199 QDD--FPY------------IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN  264 (309)
Q Consensus       199 ~~~--~~~------------~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~  264 (309)
                      ...  ...            ...+||+|+. |+.+ ....+.+++.+.+   +.+   +++.++.. .++.+-+..+.+ 
T Consensus       265 ~~l~~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l~~---~~~---ivyvSC~p-~tlarDl~~L~~-  334 (362)
T PRK05031        265 EFTQAMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLVQA---YER---ILYISCNP-ETLCENLETLSQ-  334 (362)
T ss_pred             HHHHHHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHHHc---cCC---EEEEEeCH-HHHHHHHHHHcC-
Confidence            210  000            0125899999 7776 3445555555544   443   45544433 666665566654 


Q ss_pred             CCeEEEEeccCchhhhhhh
Q 021691          265 HLHFSIIENYNAEIWKRHQ  283 (309)
Q Consensus       265 G~~~~~~~~~~~~~~~~~~  283 (309)
                      ||.++.+..+|.-+...|-
T Consensus       335 gY~l~~v~~~DmFPqT~Hv  353 (362)
T PRK05031        335 THKVERFALFDQFPYTHHM  353 (362)
T ss_pred             CcEEEEEEEcccCCCCCcE
Confidence            9999998888876555553

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.14  E-value=1.2e-09  Score=93.78  Aligned_cols=123  Identities=11%  Similarity=0.028  Sum_probs=85.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++++|||+|||+|..+..++... ...++++|.++++++.++.+    +.       .+...+......+..+++||+|+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~----~~-------~~~~~d~~~~l~~~~~~sfD~Vi   80 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR----GV-------NVIQGDLDEGLEAFPDKSFDYVI   80 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc----CC-------eEEEEEhhhcccccCCCCcCEEE
Confidence            56799999999999988877653 45789999999999887642    22       33333332211123456899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee--------------------------------cCCchHHHHHHHH
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP--------------------------------KRGDSLDKFLEEI  261 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~--------------------------------~r~~~~~~f~~~~  261 (309)
                      ++.++++..+...+++.+.+.++++     ++..+                                .+..+.+++.+.+
T Consensus        81 ~~~~l~~~~d~~~~l~e~~r~~~~~-----ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll  155 (194)
T TIGR02081        81 LSQTLQATRNPEEILDEMLRVGRHA-----IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLC  155 (194)
T ss_pred             EhhHhHcCcCHHHHHHHHHHhCCeE-----EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHH
Confidence            9999999888888888887765432     11100                                0123567788899


Q ss_pred             HhCCCeEEEEec
Q 021691          262 EGNHLHFSIIEN  273 (309)
Q Consensus       262 ~~~G~~~~~~~~  273 (309)
                      +++||++.....
T Consensus       156 ~~~Gf~v~~~~~  167 (194)
T TIGR02081       156 GELNLRILDRAA  167 (194)
T ss_pred             HHCCCEEEEEEE
Confidence            999999876554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.14  E-value=6.7e-10  Score=93.61  Aligned_cols=123  Identities=11%  Similarity=0.051  Sum_probs=91.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      +|.+|||||||.|.+-..|... .+.+..++|++++.+..+.+    +|+       .+.+.|.+......++++||+||
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----rGv-------~Viq~Dld~gL~~f~d~sFD~VI   80 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----RGV-------SVIQGDLDEGLADFPDQSFDYVI   80 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----cCC-------CEEECCHHHhHhhCCCCCccEEe
Confidence            6889999999999887776654 46789999999987665543    344       56777777666567789999999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee--------------------------------cCCchHHHHHHHH
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP--------------------------------KRGDSLDKFLEEI  261 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~--------------------------------~r~~~~~~f~~~~  261 (309)
                      ++.++.....+..+++++.|+   +.  .+++.-|                                .+.-|...|.+.|
T Consensus        81 lsqtLQ~~~~P~~vL~EmlRV---gr--~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc  155 (193)
T PF07021_consen   81 LSQTLQAVRRPDEVLEEMLRV---GR--RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC  155 (193)
T ss_pred             hHhHHHhHhHHHHHHHHHHHh---cC--eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence            999999988888887777655   33  2333221                                0123788999999


Q ss_pred             HhCCCeEEEEec
Q 021691          262 EGNHLHFSIIEN  273 (309)
Q Consensus       262 ~~~G~~~~~~~~  273 (309)
                      ++.|+.+..-..
T Consensus       156 ~~~~i~I~~~~~  167 (193)
T PF07021_consen  156 RELGIRIEERVF  167 (193)
T ss_pred             HHCCCEEEEEEE
Confidence            999999866443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.13  E-value=2e-09  Score=91.93  Aligned_cols=126  Identities=17%  Similarity=0.183  Sum_probs=82.1

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      .+.+.......+.+|.+|||+|||+|.++..+++.. +..+|+++|+++.+           ..    ..+.+...+..+
T Consensus        19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~----~~i~~~~~d~~~   83 (188)
T TIGR00438        19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI----ENVDFIRGDFTD   83 (188)
T ss_pred             HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC----CCceEEEeeCCC
Confidence            344444445566789999999999999998888775 45689999999854           11    123444455443


Q ss_pred             CCC------CCCCCCccEEEEcCCCCC-----c------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHH
Q 021691          200 DDF------PYIVDTFDVIVASDCTFF-----K------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIE  262 (309)
Q Consensus       200 ~~~------~~~~~~fDvIi~~d~ly~-----~------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~  262 (309)
                      ...      ....++||+|++..+.+.     .      ...+.+++.+.++|+|+|  .+++.. .....+.+++..++
T Consensus        84 ~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~lvi~~-~~~~~~~~~l~~l~  160 (188)
T TIGR00438        84 EEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKG--NFVVKV-FQGEEIDEYLNELR  160 (188)
T ss_pred             hhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCC--EEEEEE-ccCccHHHHHHHHH
Confidence            210      123457999998543221     1      123678999999999999  444433 44555667777776


Q ss_pred             hC
Q 021691          263 GN  264 (309)
Q Consensus       263 ~~  264 (309)
                      +.
T Consensus       161 ~~  162 (188)
T TIGR00438       161 KL  162 (188)
T ss_pred             hh
Confidence            65

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.13  E-value=3.7e-10  Score=97.82  Aligned_cols=107  Identities=14%  Similarity=0.146  Sum_probs=86.4

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE-eeCCCCCCCCCCCCc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT-LHWNQDDFPYIVDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~-l~w~~~~~~~~~~~f  209 (309)
                      ....++|||+|++.|+-++.+|..++ ..+++.+|.+++..+.+++|++..+..   .++.... +|+-+.......++|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~---~~i~~~~~gdal~~l~~~~~~~f  133 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD---DRIELLLGGDALDVLSRLLDGSF  133 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEEecCcHHHHHHhccCCCc
Confidence            34789999999999999999999888 679999999999999999999999984   3455554 354433222456899


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |+|+. |+  .+...+..+..+.++|++||   +++++
T Consensus       134 DliFI-Da--dK~~yp~~le~~~~lLr~GG---liv~D  165 (219)
T COG4122         134 DLVFI-DA--DKADYPEYLERALPLLRPGG---LIVAD  165 (219)
T ss_pred             cEEEE-eC--ChhhCHHHHHHHHHHhCCCc---EEEEe
Confidence            99998 43  57788999999999999999   55555

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.13  E-value=1.5e-09  Score=104.72  Aligned_cols=131  Identities=14%  Similarity=0.069  Sum_probs=89.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..+|.+|||+|||+|..++.+++.. +..+|+++|+++.+++.+++|++.+++.    ++.+...|...... ...++||
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~----~v~~~~~D~~~~~~-~~~~~fD  322 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT----NIETKALDARKVHE-KFAEKFD  322 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeCCcccccc-hhcccCC
Confidence            3468899999999999999988876 4579999999999999999999998873    36666665543211 1126799


Q ss_pred             EEEEcCCCCCcc---------------c-------HHHHHHHHHHHHhcCCCeEEEEEeecC--CchHHHHHHHHHhC-C
Q 021691          211 VIVASDCTFFKE---------------F-------HKDLARIIKFLLKKVGPSEALFFSPKR--GDSLDKFLEEIEGN-H  265 (309)
Q Consensus       211 vIi~~d~ly~~~---------------~-------~~~ll~~l~~lLk~~G~~~~ii~~~~r--~~~~~~f~~~~~~~-G  265 (309)
                      +|++..+.+...               +       ...++..+.++|+|||  .+++.++.-  .+........++++ +
T Consensus       323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG--~lvystcs~~~~Ene~vv~~~l~~~~~  400 (444)
T PRK14902        323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGG--ILVYSTCTIEKEENEEVIEAFLEEHPE  400 (444)
T ss_pred             EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCC--EEEEEcCCCChhhhHHHHHHHHHhCCC
Confidence            999844322111               1       2457889999999999  566554332  23333344445554 3


Q ss_pred             CeEE
Q 021691          266 LHFS  269 (309)
Q Consensus       266 ~~~~  269 (309)
                      |...
T Consensus       401 ~~~~  404 (444)
T PRK14902        401 FELV  404 (444)
T ss_pred             cEEe
Confidence            5543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.13  E-value=1.5e-09  Score=94.53  Aligned_cols=146  Identities=12%  Similarity=0.007  Sum_probs=92.2

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-----------CC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-----------GG  187 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-----------~~  187 (309)
                      ...|.+++.... ..++.+|||+|||.|.-++.+|.+  +.+|+++|+++.+++.+..   .++...           ..
T Consensus        20 ~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~   93 (213)
T TIGR03840        20 NPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRA   93 (213)
T ss_pred             CHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeec
Confidence            455666665431 135679999999999999999986  7799999999999997633   222211           12


Q ss_pred             CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEeec-----C---CchHHHH
Q 021691          188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFSPK-----R---GDSLDKF  257 (309)
Q Consensus       188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~~~-----r---~~~~~~f  257 (309)
                      .+|++...|..+... ...++||.|+...++.+  .+..+..++.+.++|+|||...++.+...     +   .-+.+++
T Consensus        94 ~~v~~~~~D~~~~~~-~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL  172 (213)
T TIGR03840        94 GNIEIFCGDFFALTA-ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEV  172 (213)
T ss_pred             CceEEEEccCCCCCc-ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHH
Confidence            345555555443221 11357999998665544  45677899999999999994323322221     1   1234555


Q ss_pred             HHHHHhCCCeEEEEe
Q 021691          258 LEEIEGNHLHFSIIE  272 (309)
Q Consensus       258 ~~~~~~~G~~~~~~~  272 (309)
                      .+.+. .++.++.++
T Consensus       173 ~~~f~-~~~~i~~~~  186 (213)
T TIGR03840       173 EALYG-GHYEIELLE  186 (213)
T ss_pred             HHHhc-CCceEEEEe
Confidence            55554 345555544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=4.3e-10  Score=107.26  Aligned_cols=151  Identities=17%  Similarity=0.163  Sum_probs=110.0

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      +..|..+.....+..++.+||||-||.|.+|+.||+.  ..+|+++|+++++++.+++|++.|++.    ++.+...+-.
T Consensus       278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~----N~~f~~~~ae  351 (432)
T COG2265         278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGID----NVEFIAGDAE  351 (432)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEeCCHH
Confidence            5667777777777778889999999999999999975  789999999999999999999999984    4666555332


Q ss_pred             CCCCCC-CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCch
Q 021691          199 QDDFPY-IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAE  277 (309)
Q Consensus       199 ~~~~~~-~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~  277 (309)
                      ...... ....||.|+. |+.--. .-+.+++.+.++   +.  .-|++...++.|+.+....+.+.|+.++.+..+|.-
T Consensus       352 ~~~~~~~~~~~~d~Vvv-DPPR~G-~~~~~lk~l~~~---~p--~~IvYVSCNP~TlaRDl~~L~~~gy~i~~v~~~DmF  424 (432)
T COG2265         352 EFTPAWWEGYKPDVVVV-DPPRAG-ADREVLKQLAKL---KP--KRIVYVSCNPATLARDLAILASTGYEIERVQPFDMF  424 (432)
T ss_pred             HHhhhccccCCCCEEEE-CCCCCC-CCHHHHHHHHhc---CC--CcEEEEeCCHHHHHHHHHHHHhCCeEEEEEEEeccC
Confidence            211111 2357899999 554322 223444544443   22  223334447789999999999999999999888877


Q ss_pred             hhhhh
Q 021691          278 IWKRH  282 (309)
Q Consensus       278 ~~~~~  282 (309)
                      +|..|
T Consensus       425 P~T~H  429 (432)
T COG2265         425 PHTHH  429 (432)
T ss_pred             CCccc
Confidence            77655

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.11  E-value=7.9e-11  Score=106.30  Aligned_cols=158  Identities=23%  Similarity=0.131  Sum_probs=101.8

Q ss_pred             ccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691          106 NIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF  185 (309)
Q Consensus       106 ~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~  185 (309)
                      ..-.||+.   .-....=.++...   .+|++||++-|-||.+|+.+++ .|+.+|+.+|.|..+++.+++|+..|++..
T Consensus       101 ~gqktGlF---lDqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~  173 (286)
T PF10672_consen  101 DGQKTGLF---LDQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDL  173 (286)
T ss_dssp             SSSSTSS----GGGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CC
T ss_pred             CCCcceEc---HHHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence            34678985   1112222233332   3689999999999999998554 677899999999999999999999999853


Q ss_pred             CCCceEEEEeeCCCCCC-CCCCCCccEEEEcCCCCC------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH
Q 021691          186 GGTTVKSMTLHWNQDDF-PYIVDTFDVIVASDCTFF------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL  258 (309)
Q Consensus       186 ~~~~v~~~~l~w~~~~~-~~~~~~fDvIi~~d~ly~------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~  258 (309)
                        ..+++...|.-.... -...++||+||+-.+.|.      ..++..++..+.++|+++|  .++.+++...-+.+.|.
T Consensus       174 --~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG--~l~~~scs~~i~~~~l~  249 (286)
T PF10672_consen  174 --DRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGG--LLLTCSCSHHISPDFLL  249 (286)
T ss_dssp             --TCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEE--EEEEEE--TTS-HHHHH
T ss_pred             --cceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCC--EEEEEcCCcccCHHHHH
Confidence              345554433211000 011358999999555554      2357788999999999999  66667776666677788


Q ss_pred             HHHHhCCCeEEEEecc
Q 021691          259 EEIEGNHLHFSIIENY  274 (309)
Q Consensus       259 ~~~~~~G~~~~~~~~~  274 (309)
                      +.+.+.+-.++.++.+
T Consensus       250 ~~~~~~a~~~~~~~~~  265 (286)
T PF10672_consen  250 EAVAEAAREVEFIERL  265 (286)
T ss_dssp             HHHHHHHHHCEEEEEE
T ss_pred             HHHHHhCccceEeeee
Confidence            8777766555555543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.11  E-value=2.4e-09  Score=103.37  Aligned_cols=127  Identities=19%  Similarity=0.170  Sum_probs=89.7

Q ss_pred             CCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691          110 TGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGT  188 (309)
Q Consensus       110 tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~  188 (309)
                      -|...+++.+..++-.++.   ..+|++|||+|||+|..++.+++..+ ..+|+++|.++.+++.+++|+..+++.    
T Consensus       229 ~G~~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~----  301 (445)
T PRK14904        229 LGLVSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT----  301 (445)
T ss_pred             CcEEEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC----
Confidence            4555578655555544443   35789999999999999988887653 469999999999999999999988762    


Q ss_pred             ceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC----------------cc-------cHHHHHHHHHHHHhcCCCeEEEE
Q 021691          189 TVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF----------------KE-------FHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       189 ~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~----------------~~-------~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      ++.+...|.....   ...+||+|++ |+.+.                .+       ....++..+.++|++||  .+++
T Consensus       302 ~v~~~~~Da~~~~---~~~~fD~Vl~-D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG--~lvy  375 (445)
T PRK14904        302 IIETIEGDARSFS---PEEQPDAILL-DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGG--VLVY  375 (445)
T ss_pred             eEEEEeCcccccc---cCCCCCEEEE-cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEE
Confidence            4555555443221   2357999997 43221                01       12358999999999999  5666


Q ss_pred             Eeec
Q 021691          246 FSPK  249 (309)
Q Consensus       246 ~~~~  249 (309)
                      .++.
T Consensus       376 stcs  379 (445)
T PRK14904        376 ATCS  379 (445)
T ss_pred             EeCC
Confidence            5543

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.11  E-value=1e-09  Score=82.28  Aligned_cols=97  Identities=23%  Similarity=0.236  Sum_probs=75.9

Q ss_pred             eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691          137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD  216 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d  216 (309)
                      +|+|+|||+|..+..+++ .+..+++++|.++.+++.++++...+..    ..+.+...++..... ...++||+|+++.
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLA----DNVEVLKGDAEELPP-EADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccc----cceEEEEcChhhhcc-ccCCceEEEEEcc
Confidence            589999999999988777 4678999999999999999864433332    345555555543322 2346799999999


Q ss_pred             CCCC-cccHHHHHHHHHHHHhcCC
Q 021691          217 CTFF-KEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       217 ~ly~-~~~~~~ll~~l~~lLk~~G  239 (309)
                      ++++ ......+++.+.++++++|
T Consensus        75 ~~~~~~~~~~~~l~~~~~~l~~~g   98 (107)
T cd02440          75 PLHHLVEDLARFLEEARRLLKPGG   98 (107)
T ss_pred             ceeehhhHHHHHHHHHHHHcCCCC
Confidence            9888 8889999999999999999

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.11  E-value=7.4e-10  Score=103.88  Aligned_cols=134  Identities=25%  Similarity=0.203  Sum_probs=97.8

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE---eeCCCCCCCCCCCCc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT---LHWNQDDFPYIVDTF  209 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~---l~w~~~~~~~~~~~f  209 (309)
                      ..|++||++-|-||.+|+.+|. .|+.+||.+|.|..+++.+++|++.|++...  ++....   ++|-... .....+|
T Consensus       216 ~~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~--~~~~i~~Dvf~~l~~~-~~~g~~f  291 (393)
T COG1092         216 AAGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNGLDGD--RHRFIVGDVFKWLRKA-ERRGEKF  291 (393)
T ss_pred             ccCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcCCCcc--ceeeehhhHHHHHHHH-HhcCCcc
Confidence            4599999999999999999555 5777999999999999999999999998532  222222   2221111 1224589


Q ss_pred             cEEEEcCCCCC---------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHH----hCCCeEEEEe
Q 021691          210 DVIVASDCTFF---------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIE----GNHLHFSIIE  272 (309)
Q Consensus       210 DvIi~~d~ly~---------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~----~~G~~~~~~~  272 (309)
                      |+||.-++-|.         ..++..++....++|+|+|  .++++++.+.-..+.|.+.+.    ..|...+.++
T Consensus       292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG--~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~  365 (393)
T COG1092         292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGG--TLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIE  365 (393)
T ss_pred             cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCC--EEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEee
Confidence            99999555554         2467889999999999999  777788777777777766554    4455555554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.10  E-value=4.5e-10  Score=101.02  Aligned_cols=110  Identities=14%  Similarity=0.151  Sum_probs=76.2

Q ss_pred             CCCeEEEeCCCCCh----hhHHHHHhcC-----CcEEEEEcCCHHHHHHHHHHHHh----ccCC-----------C----
Q 021691          134 RSKRVIELGSGYGL----AGLVIAATTE-----ALEVVISDGNPQVVDYIQRNVDA----NSGA-----------F----  185 (309)
Q Consensus       134 ~g~~VLELG~GtG~----~~l~la~~~~-----~~~V~~tD~~~~~l~~~~~n~~~----n~~~-----------~----  185 (309)
                      ++.+|+|+|||||.    +++.+++..+     ..+|+|+|+|+.||+.+++.+-.    .++.           .    
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    4555665443     35899999999999999976410    1110           0    


Q ss_pred             ----CCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          186 ----GGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       186 ----~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                          -...|.+...|.....  ...++||+|+|.+++++.  +....+++.+.+.|+|||  .+++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~--~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG--~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAES--PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGG--YLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCC--CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCe--EEEEEC
Confidence                0124555555544322  235789999999887664  456789999999999999  555543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.10  E-value=4.4e-11  Score=102.28  Aligned_cols=148  Identities=22%  Similarity=0.216  Sum_probs=98.4

Q ss_pred             cCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691          107 IDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG  186 (309)
Q Consensus       107 ~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~  186 (309)
                      .++-|+.  -|  +.|++-+... ..-+=+++||||||||+.|..+-..  +.+.+++|+|..|++.+.++--...+.  
T Consensus       103 VdkL~Y~--vP--~~l~emI~~~-~~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~YD~L~--  173 (287)
T COG4976         103 VDKLGYS--VP--ELLAEMIGKA-DLGPFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLYDTLY--  173 (287)
T ss_pred             HHHhcCc--cH--HHHHHHHHhc-cCCccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccchHHHH--
Confidence            4555553  12  4555544332 2222479999999999999987666  679999999999999887653222110  


Q ss_pred             CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec--------------C-C
Q 021691          187 GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK--------------R-G  251 (309)
Q Consensus       187 ~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~--------------r-~  251 (309)
                          ......+..   .....+||+|.++|++-.....+.++.....+|+++|   ++.++..              | .
T Consensus       174 ----~Aea~~Fl~---~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gG---lfaFSvE~l~~~~~f~l~ps~RyA  243 (287)
T COG4976         174 ----VAEAVLFLE---DLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGG---LFAFSVETLPDDGGFVLGPSQRYA  243 (287)
T ss_pred             ----HHHHHHHhh---hccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCc---eEEEEecccCCCCCeecchhhhhc
Confidence                000000111   1234689999999999999999999999999999999   4444421              1 1


Q ss_pred             chHHHHHHHHHhCCCeEEEEec
Q 021691          252 DSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       252 ~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      ....-....+...||.+..++.
T Consensus       244 H~~~YVr~~l~~~Gl~~i~~~~  265 (287)
T COG4976         244 HSESYVRALLAASGLEVIAIED  265 (287)
T ss_pred             cchHHHHHHHHhcCceEEEeec
Confidence            2223456778889999866654

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.09  E-value=2.8e-09  Score=95.98  Aligned_cols=110  Identities=17%  Similarity=0.120  Sum_probs=79.9

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..+|.+|||+|||+|..++.+|...+ .+.|+++|.++.+++.+++|++.+++.    ++.+...|...  .....+.||
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~----~v~~~~~D~~~--~~~~~~~fD  142 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL----NVAVTNFDGRV--FGAAVPKFD  142 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC----cEEEecCCHHH--hhhhccCCC
Confidence            35788999999999999999888764 358999999999999999999998872    45555544322  122235699


Q ss_pred             EEEEcCCCCCc---------------c-------cHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          211 VIVASDCTFFK---------------E-------FHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       211 vIi~~d~ly~~---------------~-------~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      +|++..+....               .       ....+++.+.++|++||  .++++++.
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG--~lvYstcs  201 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGG--VLVYSTCS  201 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEeCC
Confidence            99983332211               0       12458888999999999  66666544

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.09  E-value=1.2e-09  Score=92.24  Aligned_cols=116  Identities=16%  Similarity=0.223  Sum_probs=85.6

Q ss_pred             eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceE-EEEeeCCCCCCC-CCCCCccEEEE
Q 021691          137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVK-SMTLHWNQDDFP-YIVDTFDVIVA  214 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~-~~~l~w~~~~~~-~~~~~fDvIi~  214 (309)
                      .|||+|||||..--+. .--+..+|+++|.++.|-+.+.+.+..+..    .++. +...+.  ++.+ ..++++|+|++
T Consensus        79 ~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~----~~~~~fvva~g--e~l~~l~d~s~DtVV~  151 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKP----LQVERFVVADG--ENLPQLADGSYDTVVC  151 (252)
T ss_pred             ceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccC----cceEEEEeech--hcCcccccCCeeeEEE
Confidence            6899999999765442 223567999999999999999999998854    2333 222221  2333 34689999999


Q ss_pred             cCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCC--chHHHHHHHH
Q 021691          215 SDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRG--DSLDKFLEEI  261 (309)
Q Consensus       215 ~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~--~~~~~f~~~~  261 (309)
                      .-++-..++....++.++++|+|||  .+++..+.+.  .+...+++..
T Consensus       152 TlvLCSve~~~k~L~e~~rlLRpgG--~iifiEHva~~y~~~n~i~q~v  198 (252)
T KOG4300|consen  152 TLVLCSVEDPVKQLNEVRRLLRPGG--RIIFIEHVAGEYGFWNRILQQV  198 (252)
T ss_pred             EEEEeccCCHHHHHHHHHHhcCCCc--EEEEEecccccchHHHHHHHHH
Confidence            9999999999999999999999999  6666665553  3444455443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.08  E-value=3e-09  Score=102.38  Aligned_cols=131  Identities=13%  Similarity=0.058  Sum_probs=89.9

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--CCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP--YIVD  207 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~--~~~~  207 (309)
                      ...+|.+|||+|||+|..++.++...+ .++|+++|.++.+++.+++|+..+++.    ++.+...|.......  ...+
T Consensus       249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~----~v~~~~~D~~~~~~~~~~~~~  324 (434)
T PRK14901        249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK----SIKILAADSRNLLELKPQWRG  324 (434)
T ss_pred             CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC----eEEEEeCChhhcccccccccc
Confidence            445789999999999999999888754 469999999999999999999999873    455555543322111  2246


Q ss_pred             CccEEEEcCCC------CCcc----------------cHHHHHHHHHHHHhcCCCeEEEEEeec--CCchHHHHHHHHHh
Q 021691          208 TFDVIVASDCT------FFKE----------------FHKDLARIIKFLLKKVGPSEALFFSPK--RGDSLDKFLEEIEG  263 (309)
Q Consensus       208 ~fDvIi~~d~l------y~~~----------------~~~~ll~~l~~lLk~~G~~~~ii~~~~--r~~~~~~f~~~~~~  263 (309)
                      +||.|++..+.      ....                ....++..+.++|+|||  .++++++.  ..+........+++
T Consensus       325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG--~lvystcsi~~~Ene~~v~~~l~~  402 (434)
T PRK14901        325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGG--TLVYATCTLHPAENEAQIEQFLAR  402 (434)
T ss_pred             cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEeCCCChhhHHHHHHHHHHh
Confidence            89999983221      1111                13578899999999999  56655533  33444445555555


Q ss_pred             C-CCe
Q 021691          264 N-HLH  267 (309)
Q Consensus       264 ~-G~~  267 (309)
                      + +|.
T Consensus       403 ~~~~~  407 (434)
T PRK14901        403 HPDWK  407 (434)
T ss_pred             CCCcE
Confidence            5 454

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.07  E-value=3e-09  Score=93.40  Aligned_cols=106  Identities=13%  Similarity=0.177  Sum_probs=77.4

Q ss_pred             cccHHHHHHHHhh--CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          116 WPSEDVLAFFSLS--HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       116 W~sa~~La~~l~~--~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      |+.++.+-..+..  +...+.+..+||+|||+|..++.+++.++...|+|+|.++.++..+.+|++.+++.   +.+.+.
T Consensus       128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~---g~i~v~  204 (328)
T KOG2904|consen  128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS---GRIEVI  204 (328)
T ss_pred             ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc---CceEEE
Confidence            6655554333332  33455667899999999999999999999999999999999999999999999884   556665


Q ss_pred             EeeCCCCC---CCCCCCCccEEEEcCCCCCcccH
Q 021691          194 TLHWNQDD---FPYIVDTFDVIVASDCTFFKEFH  224 (309)
Q Consensus       194 ~l~w~~~~---~~~~~~~fDvIi~~d~ly~~~~~  224 (309)
                      ..+...+.   .+.+.++.|+++++.+.-..++.
T Consensus       205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~  238 (328)
T KOG2904|consen  205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDN  238 (328)
T ss_pred             ecccccccccccccccCceeEEecCCCcccccch
Confidence            44332221   22446899999997665444443

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.07  E-value=1.6e-09  Score=95.83  Aligned_cols=134  Identities=19%  Similarity=0.190  Sum_probs=97.0

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      ++....++.+|.+|||-|.|+|.++..++... +.++|+..|.+++..+.+++|++.+++.   ..|.+..-|...+...
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~---~~v~~~~~Dv~~~g~~  107 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD---DNVTVHHRDVCEEGFD  107 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC---TTEEEEES-GGCG--S
T ss_pred             HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC---CCceeEecceeccccc
Confidence            34445678899999999999999999999765 4579999999999999999999999883   5678877777543322


Q ss_pred             -CCCCCccEEEEcCCCCCcccHHHHHHHHHHHH-hcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691          204 -YIVDTFDVIVASDCTFFKEFHKDLARIIKFLL-KKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       204 -~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lL-k~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~  269 (309)
                       .....+|.|+. |.    ..+...+..+.+.| ++||  .+..+.|.- +...+..+.+++.||...
T Consensus       108 ~~~~~~~DavfL-Dl----p~Pw~~i~~~~~~L~~~gG--~i~~fsP~i-eQv~~~~~~L~~~gf~~i  167 (247)
T PF08704_consen  108 EELESDFDAVFL-DL----PDPWEAIPHAKRALKKPGG--RICCFSPCI-EQVQKTVEALREHGFTDI  167 (247)
T ss_dssp             TT-TTSEEEEEE-ES----SSGGGGHHHHHHHE-EEEE--EEEEEESSH-HHHHHHHHHHHHTTEEEE
T ss_pred             ccccCcccEEEE-eC----CCHHHHHHHHHHHHhcCCc--eEEEECCCH-HHHHHHHHHHHHCCCeee
Confidence             23468999998 43    45566788888999 8888  666666543 345677889999998753

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.06  E-value=2.8e-09  Score=98.22  Aligned_cols=106  Identities=19%  Similarity=0.168  Sum_probs=76.0

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      +..++.+..++.++.+|||+|||+|..+..+++..+. .+|+++|.++++++.+++++..++..    ++.+...|....
T Consensus        68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~----nV~~i~gD~~~~  143 (322)
T PRK13943         68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE----NVIFVCGDGYYG  143 (322)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEeCChhhc
Confidence            3334444455667899999999999999999987653 47999999999999999999988763    455544443211


Q ss_pred             CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          201 DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                        .....+||+|++...+      +.....+.+.|+++|
T Consensus       144 --~~~~~~fD~Ii~~~g~------~~ip~~~~~~LkpgG  174 (322)
T PRK13943        144 --VPEFAPYDVIFVTVGV------DEVPETWFTQLKEGG  174 (322)
T ss_pred             --ccccCCccEEEECCch------HHhHHHHHHhcCCCC
Confidence              1122579999986332      223445678899999

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.06  E-value=2e-10  Score=97.63  Aligned_cols=111  Identities=21%  Similarity=0.284  Sum_probs=74.9

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCCCCCCcc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPYIVDTFD  210 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~~~~~fD  210 (309)
                      ..|.+||||.||+|.+|+.++. .|+.+|+++|.++.++..+++|++.-+..   .++.+...|.....  ......+||
T Consensus        41 ~~g~~vLDLFaGSGalGlEALS-RGA~~v~fVE~~~~a~~~i~~N~~~l~~~---~~~~v~~~d~~~~l~~~~~~~~~fD  116 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALS-RGAKSVVFVEKNRKAIKIIKKNLEKLGLE---DKIRVIKGDAFKFLLKLAKKGEKFD  116 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHT-G---GGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred             cCCCeEEEcCCccCccHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHhCCC---cceeeeccCHHHHHHhhcccCCCce
Confidence            6899999999999999999555 57899999999999999999999987763   23444433321111  001247899


Q ss_pred             EEEEcCCCCCccc-HHHHHHHHH--HHHhcCCCeEEEEEeecC
Q 021691          211 VIVASDCTFFKEF-HKDLARIIK--FLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       211 vIi~~d~ly~~~~-~~~ll~~l~--~lLk~~G~~~~ii~~~~r  250 (309)
                      +|++ |+.|.... ...++..+.  .+|+++|  .+++-+..+
T Consensus       117 iIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~~--~ii~E~~~~  156 (183)
T PF03602_consen  117 IIFL-DPPYAKGLYYEELLELLAENNLLNEDG--LIIIEHSKK  156 (183)
T ss_dssp             EEEE---STTSCHHHHHHHHHHHHTTSEEEEE--EEEEEEETT
T ss_pred             EEEE-CCCcccchHHHHHHHHHHHCCCCCCCE--EEEEEecCC
Confidence            9999 89999887 488888887  6888888  444433333

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.06  E-value=3.8e-09  Score=92.34  Aligned_cols=146  Identities=12%  Similarity=0.039  Sum_probs=91.6

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-----------CC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-----------GG  187 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-----------~~  187 (309)
                      ...|.+|+... ...++.+|||+|||.|.-++.||..  +.+|+|+|+++.+++.+..   .+++..           ..
T Consensus        23 ~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~   96 (218)
T PRK13255         23 NPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQA   96 (218)
T ss_pred             CHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH---HcCCCcccccccccccccc
Confidence            34456666432 2235679999999999999999886  7799999999999998642   333321           12


Q ss_pred             CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEee--c---C---CchHHHH
Q 021691          188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFSP--K---R---GDSLDKF  257 (309)
Q Consensus       188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~~--~---r---~~~~~~f  257 (309)
                      .+|+....|.-+... ...+.||.|+...++.+  .+.....++.+.++|+|||...++....  .   +   .-+.+++
T Consensus        97 ~~v~~~~~D~~~l~~-~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el  175 (218)
T PRK13255         97 GEITIYCGDFFALTA-ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEV  175 (218)
T ss_pred             CceEEEECcccCCCc-ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHH
Confidence            344444443332211 12357999997665444  5567889999999999999433322221  1   1   1245566


Q ss_pred             HHHHHhCCCeEEEEe
Q 021691          258 LEEIEGNHLHFSIIE  272 (309)
Q Consensus       258 ~~~~~~~G~~~~~~~  272 (309)
                      .+.+.. +|.++.++
T Consensus       176 ~~~~~~-~~~i~~~~  189 (218)
T PRK13255        176 EALYAG-CFEIELLE  189 (218)
T ss_pred             HHHhcC-CceEEEee
Confidence            666643 35655544

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.1e-09  Score=91.95  Aligned_cols=112  Identities=18%  Similarity=0.152  Sum_probs=83.4

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .|=++-.+...+.+...+.+|.+|||+|||+|..+-.+|+.  ..+|+.+|..++..+.+++|++..+..    +|.+..
T Consensus        53 qtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~----nV~v~~  126 (209)
T COG2518          53 QTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYE----NVTVRH  126 (209)
T ss_pred             ceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCC----ceEEEE
Confidence            34455555556666677889999999999999999999998  449999999999999999999998883    466666


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCC
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGP  240 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~  240 (309)
                      .|....-  ....+||.|+..-..-      .+-+.+.+-|++||+
T Consensus       127 gDG~~G~--~~~aPyD~I~Vtaaa~------~vP~~Ll~QL~~gGr  164 (209)
T COG2518         127 GDGSKGW--PEEAPYDRIIVTAAAP------EVPEALLDQLKPGGR  164 (209)
T ss_pred             CCcccCC--CCCCCcCEEEEeeccC------CCCHHHHHhcccCCE
Confidence            5543221  1247899998854432      222456677899994

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.04  E-value=2.1e-09  Score=97.22  Aligned_cols=110  Identities=15%  Similarity=0.222  Sum_probs=73.8

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC---cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA---LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~---~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      ...++..+..... ..+.+|||+|||+|..+..+++..+.   ..|+++|+++.|++.++++.         .++.+...
T Consensus        71 ~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~  140 (272)
T PRK11088         71 RDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVA  140 (272)
T ss_pred             HHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEe
Confidence            3444444543321 24568999999999999888876542   37999999999999987652         12333333


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      +.  ...+..+++||+|++...       +..++.+.++|+|||  .+++..+.
T Consensus       141 d~--~~lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG--~li~~~p~  183 (272)
T PRK11088        141 SS--HRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGG--IVITVTPG  183 (272)
T ss_pred             ec--ccCCCcCCceeEEEEecC-------CCCHHHHHhhccCCC--EEEEEeCC
Confidence            32  223445678999998543       234678999999999  56555543

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.00  E-value=9.7e-09  Score=96.17  Aligned_cols=149  Identities=15%  Similarity=0.142  Sum_probs=98.1

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ...|.+++...... .+++|||||||+|.+++.+++.  +.+|+++|.++++++.+++|+..|++.    ++.+...|..
T Consensus       183 ~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~~~~~~----~v~~~~~d~~  255 (353)
T TIGR02143       183 NIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAANNID----NVQIIRMSAE  255 (353)
T ss_pred             HHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEEcCHH
Confidence            34555555544322 2347999999999999998887  469999999999999999999999873    4555554443


Q ss_pred             CCCCC------C---C-----CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691          199 QDDFP------Y---I-----VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN  264 (309)
Q Consensus       199 ~~~~~------~---~-----~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~  264 (309)
                      .....      .   .     ...||+|+. |+.. ....+.+++.+.+   +++   +++.++ .+.|+.+-+..+.+ 
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l-DPPR-~G~~~~~l~~l~~---~~~---ivYvsC-~p~tlaRDl~~L~~-  325 (353)
T TIGR02143       256 EFTQAMNGVREFRRLKGIDLKSYNCSTIFV-DPPR-AGLDPDTCKLVQA---YER---ILYISC-NPETLKANLEQLSE-  325 (353)
T ss_pred             HHHHHHhhccccccccccccccCCCCEEEE-CCCC-CCCcHHHHHHHHc---CCc---EEEEEc-CHHHHHHHHHHHhc-
Confidence            21100      0   0     124899999 6663 4445556565544   443   444443 44677766667764 


Q ss_pred             CCeEEEEeccCchhhhhhhc
Q 021691          265 HLHFSIIENYNAEIWKRHQM  284 (309)
Q Consensus       265 G~~~~~~~~~~~~~~~~~~~  284 (309)
                      |+.++.+..+|.-+...|-+
T Consensus       326 ~Y~l~~v~~~DmFP~T~HvE  345 (353)
T TIGR02143       326 THRVERFALFDQFPYTHHME  345 (353)
T ss_pred             CcEEEEEEEcccCCCCCcEE
Confidence            49998888888766555533

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PLN02476 O-methyltransferase

Probab=99.00  E-value=2e-09  Score=96.82  Aligned_cols=108  Identities=15%  Similarity=0.167  Sum_probs=82.3

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC----CCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF----PYI  205 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~----~~~  205 (309)
                      ...+.++|||+|+|+|..++.+|+..+ .++|+.+|.+++..+.+++|++.+++.   .++++...+..+...    ...
T Consensus       115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~---~~I~li~GdA~e~L~~l~~~~~  191 (278)
T PLN02476        115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS---HKVNVKHGLAAESLKSMIQNGE  191 (278)
T ss_pred             HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHHHHHHHHhccc
Confidence            445689999999999999999988765 458999999999999999999999984   456655443322110    011


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .++||+|+. |.  ....+...++.+.++|++||   +++++
T Consensus       192 ~~~FD~VFI-Da--~K~~Y~~y~e~~l~lL~~GG---vIV~D  227 (278)
T PLN02476        192 GSSYDFAFV-DA--DKRMYQDYFELLLQLVRVGG---VIVMD  227 (278)
T ss_pred             CCCCCEEEE-CC--CHHHHHHHHHHHHHhcCCCc---EEEEe
Confidence            358999999 54  36678899999999999999   45544

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.99  E-value=5.3e-09  Score=89.18  Aligned_cols=122  Identities=16%  Similarity=0.249  Sum_probs=87.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      .+.-|||+|||+|+.|-.+...  +...+++|+|+.|++.+...--. +        ....-|.+ ...++..++||-+|
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-g--------dlil~DMG-~GlpfrpGtFDg~I  117 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-G--------DLILCDMG-EGLPFRPGTFDGVI  117 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-c--------CeeeeecC-CCCCCCCCccceEE
Confidence            4668999999999999886554  57899999999999999862111 1        12233444 44567789999999


Q ss_pred             EcCCCCCc-----------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          214 ASDCTFFK-----------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       214 ~~d~ly~~-----------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      +-..+.+.           .-+-.++.+++.+|+++++ .++-+.+......+...+.+..+||.-
T Consensus       118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~r-aV~QfYpen~~q~d~i~~~a~~aGF~G  182 (270)
T KOG1541|consen  118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGAR-AVLQFYPENEAQIDMIMQQAMKAGFGG  182 (270)
T ss_pred             EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCce-eEEEecccchHHHHHHHHHHHhhccCC
Confidence            86654331           1234568899999999984 223355666777788888888888753

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.98  E-value=1.8e-09  Score=93.25  Aligned_cols=121  Identities=15%  Similarity=0.085  Sum_probs=89.8

Q ss_pred             cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      .+..-++++.......+.++|||+|+|+|.-++.+|...+ .++|+.+|.+++..+.++++++..++.   .+|++...+
T Consensus        29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~---~~I~~~~gd  105 (205)
T PF01596_consen   29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD---DRIEVIEGD  105 (205)
T ss_dssp             HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG---GGEEEEES-
T ss_pred             cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC---CcEEEEEec
Confidence            3344444444444455778999999999999999998776 479999999999999999999998873   467776654


Q ss_pred             CCCCCC----CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          197 WNQDDF----PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       197 w~~~~~----~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..+...    ....++||+|+. |.  ....+...+..+.++|++||   +++++
T Consensus       106 a~~~l~~l~~~~~~~~fD~VFi-Da--~K~~y~~y~~~~~~ll~~gg---vii~D  154 (205)
T PF01596_consen  106 ALEVLPELANDGEEGQFDFVFI-DA--DKRNYLEYFEKALPLLRPGG---VIIAD  154 (205)
T ss_dssp             HHHHHHHHHHTTTTTSEEEEEE-ES--TGGGHHHHHHHHHHHEEEEE---EEEEE
T ss_pred             cHhhHHHHHhccCCCceeEEEE-cc--cccchhhHHHHHhhhccCCe---EEEEc
Confidence            432100    111358999999 44  47788899999999999999   66665

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.98  E-value=1.5e-09  Score=93.87  Aligned_cols=104  Identities=17%  Similarity=0.156  Sum_probs=72.6

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      +.++|+|||+|..++.+|..  -.+|+|||.++.||+.+++.-...-.   ....+...-  ........+++.|+|+++
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~---~t~~~ms~~--~~v~L~g~e~SVDlI~~A  107 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYC---HTPSTMSSD--EMVDLLGGEESVDLITAA  107 (261)
T ss_pred             ceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccc---cCCcccccc--ccccccCCCcceeeehhh
Confidence            37899999999999998887  56899999999999988764222111   011110000  001112236899999999


Q ss_pred             CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          216 DCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       216 d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .|+|+-+ .+.+.+.++++|+++|...++...
T Consensus       108 qa~HWFd-le~fy~~~~rvLRk~Gg~iavW~Y  138 (261)
T KOG3010|consen  108 QAVHWFD-LERFYKEAYRVLRKDGGLIAVWNY  138 (261)
T ss_pred             hhHHhhc-hHHHHHHHHHHcCCCCCEEEEEEc
Confidence            9998874 689999999999998854444443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.98  E-value=9.6e-09  Score=98.66  Aligned_cols=112  Identities=16%  Similarity=0.150  Sum_probs=81.2

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ...+|.+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++|++..++.    ++.+...|..... ....++|
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~----~v~~~~~Da~~l~-~~~~~~f  308 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS----SIEIKIADAERLT-EYVQDTF  308 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----eEEEEECchhhhh-hhhhccC
Confidence            345788999999999999999888763 569999999999999999999988762    4566655543221 1224679


Q ss_pred             cEEEEcCCCCCc----------------------ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          210 DVIVASDCTFFK----------------------EFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       210 DvIi~~d~ly~~----------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      |.|++..+....                      .....++..+.++|++||  .++++++.
T Consensus       309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG--~LvYsTCs  368 (431)
T PRK14903        309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGG--ILLYSTCT  368 (431)
T ss_pred             CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEECC
Confidence            999983222111                      122557888999999999  56665544

>PRK00811 spermidine synthase; Provisional

Probab=98.98  E-value=7.2e-09  Score=94.17  Aligned_cols=129  Identities=19%  Similarity=0.215  Sum_probs=83.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC-CCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG-AFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~-~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+++||+||||+|..+..+++..+..+|+++|+++.+++.+++++...+. .....++++...|..... ....++||+|
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l-~~~~~~yDvI  154 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV-AETENSFDVI  154 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH-hhCCCcccEE
Confidence            46899999999999999888765667999999999999999998764321 112345655554432111 1134689999


Q ss_pred             EEcCCC--CCcc---cHHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCC
Q 021691          213 VASDCT--FFKE---FHKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHL  266 (309)
Q Consensus       213 i~~d~l--y~~~---~~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~  266 (309)
                      ++ |+.  +...   .-..+++.+++.|+++|  .+++....   ....+....+.+++..-
T Consensus       155 i~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gG--vlv~~~~~~~~~~~~~~~i~~tl~~~F~  213 (283)
T PRK00811        155 IV-DSTDPVGPAEGLFTKEFYENCKRALKEDG--IFVAQSGSPFYQADEIKDMHRKLKEVFP  213 (283)
T ss_pred             EE-CCCCCCCchhhhhHHHHHHHHHHhcCCCc--EEEEeCCCcccCHHHHHHHHHHHHHHCC
Confidence            98 431  1111   12567889999999999  44433221   12234445555666533

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.97  E-value=1.2e-08  Score=87.10  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=98.6

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      .+|.+++-..     +.+|||||||||-.+..+|+.++.-...-+|.++..+..++..+...+...-..   ...+|...
T Consensus        16 ~vL~~~l~~~-----~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~---P~~lDv~~   87 (204)
T PF06080_consen   16 EVLKQYLPDS-----GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP---PLALDVSA   87 (204)
T ss_pred             HHHHHHhCcc-----CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCC---CeEeecCC
Confidence            4555555322     226999999999999999999998899999999999999998888877643222   22333333


Q ss_pred             CCCC------CCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC------CchHHHHHHHHHhC
Q 021691          200 DDFP------YIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR------GDSLDKFLEEIEGN  264 (309)
Q Consensus       200 ~~~~------~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r------~~~~~~f~~~~~~~  264 (309)
                      ...+      ....+||.|+++.++|..  ...+.+++.+.++|+++|  .++++.|.+      .++-..|-+.++..
T Consensus        88 ~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG--~L~~YGPF~~~G~~ts~SN~~FD~sLr~r  164 (204)
T PF06080_consen   88 PPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGG--LLFLYGPFNRDGKFTSESNAAFDASLRSR  164 (204)
T ss_pred             CCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCC--EEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence            2111      235689999999999884  567889999999999999  777877754      23445676666654

The function of this family is unknown.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.97  E-value=3.8e-09  Score=91.56  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=75.7

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ..+...+++...+.+|.+|||+|||+|..+-.+|...+. .+|+++|.++.+++.+++|+...+..    +|.+...|..
T Consensus        58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~----nv~~~~gdg~  133 (209)
T PF01135_consen   58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID----NVEVVVGDGS  133 (209)
T ss_dssp             HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH----SEEEEES-GG
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC----ceeEEEcchh
Confidence            334344555556889999999999999999998988664 47999999999999999999998873    5666665533


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          199 QDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       199 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ...  ....+||.|+....+..      +-..+.+.|++||
T Consensus       134 ~g~--~~~apfD~I~v~~a~~~------ip~~l~~qL~~gG  166 (209)
T PF01135_consen  134 EGW--PEEAPFDRIIVTAAVPE------IPEALLEQLKPGG  166 (209)
T ss_dssp             GTT--GGG-SEEEEEESSBBSS--------HHHHHTEEEEE
T ss_pred             hcc--ccCCCcCEEEEeeccch------HHHHHHHhcCCCc
Confidence            221  12468999999655432      2245667789999

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK01581 speE spermidine synthase; Validated

Probab=98.96  E-value=8.7e-09  Score=95.39  Aligned_cols=135  Identities=20%  Similarity=0.174  Sum_probs=87.1

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHH---HhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNV---DANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~---~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..++||+||||+|.....+++..+..+|+++|++++|++.++..-   ..++......++++..-|.... .....++||
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-L~~~~~~YD  228 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-LSSPSSLYD  228 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH-HHhcCCCcc
Confidence            467999999999998888777655679999999999999999621   1222222234566555433221 112346899


Q ss_pred             EEEEcCCCCCcc------cHHHHHHHHHHHHhcCCCeEEEEEeecCC----chHHHHHHHHHhCCCeEEEEec
Q 021691          211 VIVASDCTFFKE------FHKDLARIIKFLLKKVGPSEALFFSPKRG----DSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       211 vIi~~d~ly~~~------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~----~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      +|++ |+.....      .-..+++.+++.|+|+|  . ++.....+    ..+..+.+.+++.|+.+.....
T Consensus       229 VIIv-Dl~DP~~~~~~~LyT~EFy~~~~~~LkPgG--V-~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t  297 (374)
T PRK01581        229 VIII-DFPDPATELLSTLYTSELFARIATFLTEDG--A-FVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHT  297 (374)
T ss_pred             EEEE-cCCCccccchhhhhHHHHHHHHHHhcCCCc--E-EEEecCChhhhHHHHHHHHHHHHHhCCceEEEEE
Confidence            9998 5432111      12567899999999999  3 33332222    2224466778888887765433

>TIGR03438 probable methyltransferase

Probab=98.96  E-value=1.3e-08  Score=93.42  Aligned_cols=107  Identities=17%  Similarity=0.088  Sum_probs=73.0

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCC--CCCc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYI--VDTF  209 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~--~~~f  209 (309)
                      ++.+|||||||+|..+..+++... +.+|+++|+|++||+.+++++.....   ..++.....|..... ....  ....
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p---~~~v~~i~gD~~~~~~~~~~~~~~~~  139 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP---QLEVHGICADFTQPLALPPEPAAGRR  139 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC---CceEEEEEEcccchhhhhcccccCCe
Confidence            568999999999999998888764 47899999999999999998775432   123444444443211 1110  1123


Q ss_pred             cEEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          210 DVIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       210 DvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      .++++...+++  .+....+++.+++.|+|||  .+++
T Consensus       140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG--~~li  175 (301)
T TIGR03438       140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGG--GLLI  175 (301)
T ss_pred             EEEEecccccCCCHHHHHHHHHHHHHhcCCCC--EEEE
Confidence            34444445554  4557789999999999999  4444

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PHA03412 putative methyltransferase; Provisional

Probab=98.95  E-value=5.1e-09  Score=91.46  Aligned_cols=94  Identities=15%  Similarity=0.092  Sum_probs=66.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhc---CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATT---EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~---~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      .+.+|||+|||+|.+++.+++..   +..+|+++|+++.+++.+++|+..         +.+...|....   ....+||
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---------~~~~~~D~~~~---~~~~~FD  116 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---------ATWINADALTT---EFDTLFD  116 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---------CEEEEcchhcc---cccCCcc
Confidence            36799999999999999988763   245899999999999999987532         22222222211   1245899


Q ss_pred             EEEEcCCCCCc------------ccHHHHHHHHHHHHhcCC
Q 021691          211 VIVASDCTFFK------------EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       211 vIi~~d~ly~~------------~~~~~ll~~l~~lLk~~G  239 (309)
                      +||++.+++..            ..+..++....+++++|+
T Consensus       117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~  157 (241)
T PHA03412        117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT  157 (241)
T ss_pred             EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence            99998776631            124557888888766655

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.93  E-value=1.5e-08  Score=85.29  Aligned_cols=110  Identities=17%  Similarity=0.216  Sum_probs=77.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC--CCc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV--DTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~--~~f  209 (309)
                      .+.|.+||||-||+|.+|+.++. .|+.+|+++|.+..++..+++|++.-+..   ..+.+..-|-. .-.....  ++|
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~l~~N~~~l~~~---~~~~~~~~da~-~~L~~~~~~~~F  115 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALS-RGAARVVFVEKDRKAVKILKENLKALGLE---GEARVLRNDAL-RALKQLGTREPF  115 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCc---cceEEEeecHH-HHHHhcCCCCcc
Confidence            47899999999999999999555 58899999999999999999999887753   23333333221 1111122  359


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHH----HHHhcCCCeEEEEEeecC
Q 021691          210 DVIVASDCTFFKEFHKDLARIIK----FLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~----~lLk~~G~~~~ii~~~~r  250 (309)
                      |+|+. |+.|.....+.....+.    .+|++++   ++++....
T Consensus       116 DlVfl-DPPy~~~l~~~~~~~~~~~~~~~L~~~~---~iv~E~~~  156 (187)
T COG0742         116 DLVFL-DPPYAKGLLDKELALLLLEENGWLKPGA---LIVVEHDK  156 (187)
T ss_pred             cEEEe-CCCCccchhhHHHHHHHHHhcCCcCCCc---EEEEEeCC
Confidence            99999 99999766644443333    6688888   55555444

>TIGR00417 speE spermidine synthase

Probab=98.91  E-value=1.6e-08  Score=91.28  Aligned_cols=109  Identities=19%  Similarity=0.202  Sum_probs=73.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      .+++||+||||+|..+..+++..+..+|+++|+++++++.+++++...+......++++...|.... .....++||+|+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-l~~~~~~yDvIi  150 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-LADTENTFDVII  150 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-HHhCCCCccEEE
Confidence            4569999999999988887776556799999999999999999875533222233454443222110 011246899999


Q ss_pred             EcCCCCC---ccc--HHHHHHHHHHHHhcCCCeEEEEE
Q 021691          214 ASDCTFF---KEF--HKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       214 ~~d~ly~---~~~--~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      + |....   ...  ...+++.++++|+++|  .+++.
T Consensus       151 ~-D~~~~~~~~~~l~~~ef~~~~~~~L~pgG--~lv~~  185 (270)
T TIGR00417       151 V-DSTDPVGPAETLFTKEFYELLKKALNEDG--IFVAQ  185 (270)
T ss_pred             E-eCCCCCCcccchhHHHHHHHHHHHhCCCc--EEEEc
Confidence            8 43321   111  3577889999999999  44443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.91  E-value=5.7e-09  Score=90.20  Aligned_cols=104  Identities=19%  Similarity=0.287  Sum_probs=77.3

Q ss_pred             eEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCCCCCCccEE
Q 021691          137 RVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPYIVDTFDVI  212 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~~~~~fDvI  212 (309)
                      +|||+|||.|-....+.+..+.  -+|.+.|.+|.+++..+++...+..     ++.+...|...+.  .+...+++|+|
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~-----~~~afv~Dlt~~~~~~~~~~~svD~i  148 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES-----RVEAFVWDLTSPSLKEPPEEGSVDII  148 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh-----hhcccceeccchhccCCCCcCccceE
Confidence            7999999999888887776655  6899999999999999988766542     3333333433332  23346789999


Q ss_pred             EEcCCCC--CcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          213 VASDCTF--FKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       213 i~~d~ly--~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ++--++-  +++.+...++.+.++|||||  .+++-+
T Consensus       149 t~IFvLSAi~pek~~~a~~nl~~llKPGG--~llfrD  183 (264)
T KOG2361|consen  149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGG--SLLFRD  183 (264)
T ss_pred             EEEEEEeccChHHHHHHHHHHHHHhCCCc--EEEEee
Confidence            8865443  36778999999999999999  455444

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.89  E-value=1.6e-08  Score=88.74  Aligned_cols=110  Identities=16%  Similarity=0.037  Sum_probs=76.2

Q ss_pred             eecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHH-HHHHHHhccCCCCCCceEE
Q 021691          114 CHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDY-IQRNVDANSGAFGGTTVKS  192 (309)
Q Consensus       114 ~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~-~~~n~~~n~~~~~~~~v~~  192 (309)
                      +++.++..|...+......+.|++|||+|||||.++..+++. |+.+|+++|.++.++.. ++.+.+.-  ..+..+++ 
T Consensus        55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~--~~~~~ni~-  130 (228)
T TIGR00478        55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVK--VLERTNIR-  130 (228)
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCee--EeecCCcc-
Confidence            378889999998887765678999999999999999998885 77899999999977765 33321100  01122333 


Q ss_pred             EEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          193 MTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                       .++|.+...  .-..+|+++++        +..++..+..+|++ |
T Consensus       131 -~~~~~~~~~--d~~~~DvsfiS--------~~~~l~~i~~~l~~-~  165 (228)
T TIGR00478       131 -YVTPADIFP--DFATFDVSFIS--------LISILPELDLLLNP-N  165 (228)
T ss_pred             -cCCHhHcCC--CceeeeEEEee--------hHhHHHHHHHHhCc-C
Confidence             445554321  12367877775        23357888999998 6

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=9.6e-08  Score=79.24  Aligned_cols=141  Identities=16%  Similarity=0.161  Sum_probs=96.4

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      -++-+.=+.++.++.    .+-+||||||+|.++-.+++..+ ...+.++|+||.+++...+.+..|+..     +.+..
T Consensus        29 lDaLekd~~eL~~~~----~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-----~~~V~   99 (209)
T KOG3191|consen   29 LDALEKDAAELKGHN----PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-----IDVVR   99 (209)
T ss_pred             HHHHHHHHHHHhhcC----ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-----cceee
Confidence            344444455554432    56899999999999999888764 457899999999999999999999863     33333


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCc----------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCc
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFK----------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGD  252 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~----------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~  252 (309)
                      -|....-   ..++.|+++-+.+ |-+                      ...+.++..+..+|.|.|  .+++ -..+.+
T Consensus       100 tdl~~~l---~~~~VDvLvfNPP-YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~G--v~Yl-v~~~~N  172 (209)
T KOG3191|consen  100 TDLLSGL---RNESVDVLVFNPP-YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRG--VFYL-VALRAN  172 (209)
T ss_pred             hhHHhhh---ccCCccEEEECCC-cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCc--eEEe-eehhhc
Confidence            3222111   1267898888554 321                      125668888889999999  3333 333445


Q ss_pred             hHHHHHHHHHhCCCeEEEEe
Q 021691          253 SLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       253 ~~~~f~~~~~~~G~~~~~~~  272 (309)
                      ..++.++.++..||.+....
T Consensus       173 ~p~ei~k~l~~~g~~~~~~~  192 (209)
T KOG3191|consen  173 KPKEILKILEKKGYGVRIAM  192 (209)
T ss_pred             CHHHHHHHHhhcccceeEEE
Confidence            55778888999999876544

>PLN02366 spermidine synthase

Probab=98.87  E-value=2.9e-08  Score=90.98  Aligned_cols=129  Identities=16%  Similarity=0.097  Sum_probs=84.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ..++||+||||.|.....+++..+..+|+++|+++.+++.+++.+...+......++++..-|..........++||+|+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            46899999999999999888874557999999999999999998764322223456666555421111111246799999


Q ss_pred             EcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEee--c-CCchHHHHHHHHHhCC
Q 021691          214 ASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFSP--K-RGDSLDKFLEEIEGNH  265 (309)
Q Consensus       214 ~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~--~-r~~~~~~f~~~~~~~G  265 (309)
                      + |......     .-..+++.+++.|+|+|  .++..+.  . ....+..+.+.+++.+
T Consensus       171 ~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgG--vlv~q~~s~~~~~~~~~~i~~tl~~~F  227 (308)
T PLN02366        171 V-DSSDPVGPAQELFEKPFFESVARALRPGG--VVCTQAESMWLHMDLIEDLIAICRETF  227 (308)
T ss_pred             E-cCCCCCCchhhhhHHHHHHHHHHhcCCCc--EEEECcCCcccchHHHHHHHHHHHHHC
Confidence            8 4422111     12467899999999999  3333221  1 2334455666676664

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.87  E-value=1.2e-08  Score=95.57  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=94.4

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      +.....|.+++.......++ +||||.||+|.+|+.+|..  +.+|+|+|+++++++.|++|+..|++.    ++++...
T Consensus       179 ~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~----n~~f~~~  251 (352)
T PF05958_consen  179 PEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGID----NVEFIRG  251 (352)
T ss_dssp             HHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE-
T ss_pred             HHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCC----cceEEEe
Confidence            45566777777776555555 8999999999999999886  679999999999999999999999984    5665544


Q ss_pred             eCCCCC--------C------CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH
Q 021691          196 HWNQDD--------F------PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI  261 (309)
Q Consensus       196 ~w~~~~--------~------~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~  261 (309)
                      +-++..        .      ......+|+|+. |+.-..-. +.+++.+.+   . .  .+++.++ .+.|+.+-+..+
T Consensus       252 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil-DPPR~G~~-~~~~~~~~~---~-~--~ivYvSC-nP~tlaRDl~~L  322 (352)
T PF05958_consen  252 DAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL-DPPRAGLD-EKVIELIKK---L-K--RIVYVSC-NPATLARDLKIL  322 (352)
T ss_dssp             -SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE----TT-SC-HHHHHHHHH---S-S--EEEEEES--HHHHHHHHHHH
T ss_pred             eccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE-cCCCCCch-HHHHHHHhc---C-C--eEEEEEC-CHHHHHHHHHHH
Confidence            321100        0      001236899988 55543222 334444432   2 2  4444443 557777777777


Q ss_pred             HhCCCeEEEEeccCchhhhhhhc
Q 021691          262 EGNHLHFSIIENYNAEIWKRHQM  284 (309)
Q Consensus       262 ~~~G~~~~~~~~~~~~~~~~~~~  284 (309)
                      .+ |++++.+..+|.-++..|-+
T Consensus       323 ~~-~y~~~~v~~~DmFP~T~HvE  344 (352)
T PF05958_consen  323 KE-GYKLEKVQPVDMFPQTHHVE  344 (352)
T ss_dssp             HC-CEEEEEEEEE-SSTTSS--E
T ss_pred             hh-cCEEEEEEEeecCCCCCcEE
Confidence            65 89999888888766665543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.87  E-value=2.6e-08  Score=83.55  Aligned_cols=86  Identities=14%  Similarity=0.106  Sum_probs=62.2

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY  204 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~  204 (309)
                      .+.......++.+|||+|||+|.++..+++.  +.+|+++|.++.+++.+++++...      .++++...|.....  .
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~------~~v~ii~~D~~~~~--~   73 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAA------DNLTVIHGDALKFD--L   73 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccC------CCEEEEECchhcCC--c
Confidence            4444445567889999999999999998887  579999999999999999887531      24555555443322  2


Q ss_pred             CCCCccEEEEcCCCCCc
Q 021691          205 IVDTFDVIVASDCTFFK  221 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~  221 (309)
                      ...+||.|+++ +.|+.
T Consensus        74 ~~~~~d~vi~n-~Py~~   89 (169)
T smart00650       74 PKLQPYKVVGN-LPYNI   89 (169)
T ss_pred             cccCCCEEEEC-CCccc
Confidence            23469999985 55553

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.87  E-value=2.3e-08  Score=86.48  Aligned_cols=117  Identities=22%  Similarity=0.323  Sum_probs=82.2

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC-------------CCceEE----
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG-------------GTTVKS----  192 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~-------------~~~v~~----  192 (309)
                      .+.+.++.+||+||-+|.+++.+|+.+++..|+|+|+++..|+.|+++++.-.-...             ...+..    
T Consensus        54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a  133 (288)
T KOG2899|consen   54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA  133 (288)
T ss_pred             ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence            466788999999999999999999999999999999999999999999874321100             000000    


Q ss_pred             ---EEee-----CCC--------C-CCCCCCCCccEEEEcCCC------CCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          193 ---MTLH-----WNQ--------D-DFPYIVDTFDVIVASDCT------FFKEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       193 ---~~l~-----w~~--------~-~~~~~~~~fDvIi~~d~l------y~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                         ...+     |..        . -.......||+|+|-.+.      ++.+-+..+++.+.++|.|||   +++..|.
T Consensus       134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG---iLvvEPQ  210 (288)
T KOG2899|consen  134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG---ILVVEPQ  210 (288)
T ss_pred             cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc---EEEEcCC
Confidence               0000     000        0 001234689999996654      335668889999999999999   5666653

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.87  E-value=2.3e-08  Score=90.12  Aligned_cols=104  Identities=19%  Similarity=0.311  Sum_probs=79.1

Q ss_pred             hhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC
Q 021691          127 LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV  206 (309)
Q Consensus       127 ~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~  206 (309)
                      +.+...|.|+.|||+|||+|+++...|. .|+++|++++ ..+|.+.+++-++.|.+.   .++.+...+.++-+   +.
T Consensus       170 l~N~sDF~~kiVlDVGaGSGILS~FAaq-AGA~~vYAvE-AS~MAqyA~~Lv~~N~~~---~rItVI~GKiEdie---LP  241 (517)
T KOG1500|consen  170 LENHSDFQDKIVLDVGAGSGILSFFAAQ-AGAKKVYAVE-ASEMAQYARKLVASNNLA---DRITVIPGKIEDIE---LP  241 (517)
T ss_pred             HhcccccCCcEEEEecCCccHHHHHHHH-hCcceEEEEe-hhHHHHHHHHHHhcCCcc---ceEEEccCcccccc---Cc
Confidence            3455678999999999999999998554 6899999999 567999999999999774   56777666544333   45


Q ss_pred             CCccEEEEcC---CCCCcccHHHHHHHHHHHHhcCC
Q 021691          207 DTFDVIVASD---CTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       207 ~~fDvIi~~d---~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ++.|+||+-.   .+++....+..+. .++.|+|+|
T Consensus       242 Ek~DviISEPMG~mL~NERMLEsYl~-Ark~l~P~G  276 (517)
T KOG1500|consen  242 EKVDVIISEPMGYMLVNERMLESYLH-ARKWLKPNG  276 (517)
T ss_pred             hhccEEEeccchhhhhhHHHHHHHHH-HHhhcCCCC
Confidence            6899999954   3455555555554 359999999

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.86  E-value=1.6e-08  Score=95.47  Aligned_cols=95  Identities=23%  Similarity=0.211  Sum_probs=71.5

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      +.+|||++||+|..|+.+|+..++.+|+++|+++.+++.+++|++.|++.    .+.+...|..... .. ..+||+|+.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~----~~~v~~~Da~~~l-~~-~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE----NEKVFNKDANALL-HE-ERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ceEEEhhhHHHHH-hh-cCCCCEEEE
Confidence            46899999999999999988777779999999999999999999999874    2333333322111 11 356999999


Q ss_pred             cCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          215 SDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       215 ~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                       |++   .....++....+.++++|
T Consensus       132 -DP~---Gs~~~~l~~al~~~~~~g  152 (382)
T PRK04338        132 -DPF---GSPAPFLDSAIRSVKRGG  152 (382)
T ss_pred             -CCC---CCcHHHHHHHHHHhcCCC
Confidence             764   344567777666678888

>PRK03612 spermidine synthase; Provisional

Probab=98.84  E-value=2.9e-08  Score=97.56  Aligned_cols=132  Identities=21%  Similarity=0.251  Sum_probs=86.6

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh---ccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA---NSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~---n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ++++|||+|||+|..+..+++..+..+|+++|+++++++.++++...   |+......++++..-|-... .....++||
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-l~~~~~~fD  375 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-LRKLAEKFD  375 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH-HHhCCCCCC
Confidence            56899999999999998887753337999999999999999985422   22112234555554432211 112246899


Q ss_pred             EEEEcCCCCCc-c-----cHHHHHHHHHHHHhcCCCeEEEEEee---cCCchHHHHHHHHHhCCCeEE
Q 021691          211 VIVASDCTFFK-E-----FHKDLARIIKFLLKKVGPSEALFFSP---KRGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       211 vIi~~d~ly~~-~-----~~~~ll~~l~~lLk~~G~~~~ii~~~---~r~~~~~~f~~~~~~~G~~~~  269 (309)
                      +|++ |+.... .     .-..+++.+++.|+|+|  .+++...   .+...+....+.+++.||.+.
T Consensus       376 vIi~-D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG--~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~  440 (521)
T PRK03612        376 VIIV-DLPDPSNPALGKLYSVEFYRLLKRRLAPDG--LLVVQSTSPYFAPKAFWSIEATLEAAGLATT  440 (521)
T ss_pred             EEEE-eCCCCCCcchhccchHHHHHHHHHhcCCCe--EEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence            9999 433221 1     12357889999999999  4444332   124455667788889999543

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.81  E-value=2.2e-07  Score=81.87  Aligned_cols=120  Identities=20%  Similarity=0.216  Sum_probs=88.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ....++||||+|.|-++..++..  -.+|++|+.|+.|...+++    .|..      .....+|.+.     +.+||+|
T Consensus        93 ~~~~~lLDlGAGdG~VT~~l~~~--f~~v~aTE~S~~Mr~rL~~----kg~~------vl~~~~w~~~-----~~~fDvI  155 (265)
T PF05219_consen   93 WKDKSLLDLGAGDGEVTERLAPL--FKEVYATEASPPMRWRLSK----KGFT------VLDIDDWQQT-----DFKFDVI  155 (265)
T ss_pred             ccCCceEEecCCCcHHHHHHHhh--cceEEeecCCHHHHHHHHh----CCCe------EEehhhhhcc-----CCceEEE
Confidence            35678999999999999999887  4589999999999766654    3442      2233446532     3579999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe--ecC------------C--------ch----HHHHHHHHHhCCC
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS--PKR------------G--------DS----LDKFLEEIEGNHL  266 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~--~~r------------~--------~~----~~~f~~~~~~~G~  266 (309)
                      .|.+++-....+..+++.+++.|+|+|  .++++.  |.+            +        .+    ...|.+.++.+||
T Consensus       156 scLNvLDRc~~P~~LL~~i~~~l~p~G--~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF  233 (265)
T PF05219_consen  156 SCLNVLDRCDRPLTLLRDIRRALKPNG--RLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGF  233 (265)
T ss_pred             eehhhhhccCCHHHHHHHHHHHhCCCC--EEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCC
Confidence            999999888999999999999999999  444332  111            1        12    2356688899999


Q ss_pred             eEEEE
Q 021691          267 HFSII  271 (309)
Q Consensus       267 ~~~~~  271 (309)
                      +++..
T Consensus       234 ~v~~~  238 (265)
T PF05219_consen  234 EVERW  238 (265)
T ss_pred             EEEEE
Confidence            98654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.80  E-value=8.2e-08  Score=87.93  Aligned_cols=135  Identities=17%  Similarity=0.145  Sum_probs=102.6

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      -.||+.+.+.....+|..|||=-||||.+.+.+...  +.+|+|+|++..|++-++.|++.-++.    ...+... |+.
T Consensus       183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~----~~~~~~~-~Da  255 (347)
T COG1041         183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIE----DYPVLKV-LDA  255 (347)
T ss_pred             HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcC----ceeEEEe-ccc
Confidence            568888888888899999999999999998885443  679999999999999999999988753    2212111 233


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcc----------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKE----------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~----------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~  269 (309)
                      ...+....+||.|++ |+.|...          ....+++++.++|+++|  .+++.++..      ....+.+.||.+.
T Consensus       256 ~~lpl~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG--~~vf~~p~~------~~~~~~~~~f~v~  326 (347)
T COG1041         256 TNLPLRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGG--RIVFAAPRD------PRHELEELGFKVL  326 (347)
T ss_pred             ccCCCCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCc--EEEEecCCc------chhhHhhcCceEE
Confidence            344444457999988 8888743          37788999999999999  666666622      4467778899875


Q ss_pred             E
Q 021691          270 I  270 (309)
Q Consensus       270 ~  270 (309)
                      .
T Consensus       327 ~  327 (347)
T COG1041         327 G  327 (347)
T ss_pred             E
Confidence            4

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.79  E-value=1.2e-07  Score=80.47  Aligned_cols=125  Identities=20%  Similarity=0.326  Sum_probs=91.1

Q ss_pred             eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691          137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD  216 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d  216 (309)
                      +++|+|+|.|++|+.+|-..|..+|+.+|....=+..++.-+..-++.    ++.+...+.++   .....+||+|++-.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~----nv~v~~~R~E~---~~~~~~fd~v~aRA  123 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS----NVEVINGRAEE---PEYRESFDVVTARA  123 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S----SEEEEES-HHH---TTTTT-EEEEEEES
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC----CEEEEEeeecc---cccCCCccEEEeeh
Confidence            899999999999999999999999999999998888888888877773    56666665544   33467899999953


Q ss_pred             CCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-CchHHHHHHHHHhCCCeEEEEecc
Q 021691          217 CTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-GDSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       217 ~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-~~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                      +    .....++.....+++++|  .++++-... .+..+.....+...+.....+..+
T Consensus       124 v----~~l~~l~~~~~~~l~~~G--~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~~  176 (184)
T PF02527_consen  124 V----APLDKLLELARPLLKPGG--RLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPEF  176 (184)
T ss_dssp             S----SSHHHHHHHHGGGEEEEE--EEEEEESS--HHHHHTHHHHHHCCCEEEEEEEEE
T ss_pred             h----cCHHHHHHHHHHhcCCCC--EEEEEcCCChHHHHHHHHhHHHHhCCEEeeeccc
Confidence            3    356788999999999999  444443222 233445566677777777666654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.75  E-value=6e-08  Score=83.34  Aligned_cols=98  Identities=21%  Similarity=0.208  Sum_probs=69.1

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..+|..|+|+.||.|.+++.+|+..+++.|+++|.||.+++.+++|++.|++.   ..+.+...|.....  . ...||-
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~---~~i~~~~~D~~~~~--~-~~~~dr  172 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE---NRIEVINGDAREFL--P-EGKFDR  172 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T---TTEEEEES-GGG------TT-EEE
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC---CeEEEEcCCHHHhc--C-ccccCE
Confidence            45789999999999999999999667889999999999999999999999984   45666666544322  1 578999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      |++..+-...    .++..+..+++++|
T Consensus       173 vim~lp~~~~----~fl~~~~~~~~~~g  196 (200)
T PF02475_consen  173 VIMNLPESSL----EFLDAALSLLKEGG  196 (200)
T ss_dssp             EEE--TSSGG----GGHHHHHHHEEEEE
T ss_pred             EEECChHHHH----HHHHHHHHHhcCCc
Confidence            9996554333    35666778888776

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.75  E-value=3e-08  Score=88.00  Aligned_cols=108  Identities=17%  Similarity=0.068  Sum_probs=81.7

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-----C
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-----Y  204 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-----~  204 (309)
                      ...+.++|||||+++|.-++.+|...+ .++|+.+|.+++..+.++.+++..++.   .+|++...+..+....     .
T Consensus        76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~---~~I~~~~G~a~e~L~~l~~~~~  152 (247)
T PLN02589         76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA---HKIDFREGPALPVLDQMIEDGK  152 (247)
T ss_pred             HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CceEEEeccHHHHHHHHHhccc
Confidence            334678999999999999999988764 569999999999999999999999874   4666655443221100     0


Q ss_pred             CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..++||+|+. |.  +...+...++.+.++|++||   +++++
T Consensus       153 ~~~~fD~iFi-Da--dK~~Y~~y~~~~l~ll~~GG---viv~D  189 (247)
T PLN02589        153 YHGTFDFIFV-DA--DKDNYINYHKRLIDLVKVGG---VIGYD  189 (247)
T ss_pred             cCCcccEEEe-cC--CHHHhHHHHHHHHHhcCCCe---EEEEc
Confidence            1368999999 43  36677888888899999999   55554

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.73  E-value=7.7e-08  Score=92.48  Aligned_cols=101  Identities=22%  Similarity=0.272  Sum_probs=73.8

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~  208 (309)
                      .+++.|+|+|||+|.++..+++..    ++.+|++++.|+.++..+++.+..|+..   .+|++..-|..+-..   ..+
T Consensus       185 ~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~---~~V~vi~~d~r~v~l---pek  258 (448)
T PF05185_consen  185 SKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG---DKVTVIHGDMREVEL---PEK  258 (448)
T ss_dssp             ETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT---TTEEEEES-TTTSCH---SS-
T ss_pred             ccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC---CeEEEEeCcccCCCC---CCc
Confidence            357899999999999988765542    3579999999999999998888889883   568887776554443   348


Q ss_pred             ccEEEEcC--CCCCcccHHHHHHHHHHHHhcCC
Q 021691          209 FDVIVASD--CTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       209 fDvIi~~d--~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .|+||+--  .+-..+..+..+....++|+|+|
T Consensus       259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~G  291 (448)
T PF05185_consen  259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDG  291 (448)
T ss_dssp             EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEE
T ss_pred             eeEEEEeccCCccccccCHHHHHHHHhhcCCCC
Confidence            99999822  22334566777889999999998

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=5e-08  Score=77.97  Aligned_cols=84  Identities=15%  Similarity=0.177  Sum_probs=62.6

Q ss_pred             CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691          129 HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       129 ~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~  208 (309)
                      .-..+.|+.++|||||+|.+++. +...++..|+|+|++|++++...+|++...++     +.+.+.+......  ..+.
T Consensus        43 TygdiEgkkl~DLgcgcGmLs~a-~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-----idlLqcdildle~--~~g~  114 (185)
T KOG3420|consen   43 TYGDIEGKKLKDLGCGCGMLSIA-FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-----IDLLQCDILDLEL--KGGI  114 (185)
T ss_pred             hhccccCcchhhhcCchhhhHHH-hhcCCCceEEeeecCHHHHHHHhhchHHhhhh-----hheeeeeccchhc--cCCe
Confidence            34568999999999999999976 45567789999999999999999999887663     2333333332222  2378


Q ss_pred             ccEEEEcCCCCC
Q 021691          209 FDVIVASDCTFF  220 (309)
Q Consensus       209 fDvIi~~d~ly~  220 (309)
                      ||.++.+.++--
T Consensus       115 fDtaviNppFGT  126 (185)
T KOG3420|consen  115 FDTAVINPPFGT  126 (185)
T ss_pred             EeeEEecCCCCc
Confidence            999999666543

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.72  E-value=1.4e-07  Score=83.65  Aligned_cols=105  Identities=21%  Similarity=0.191  Sum_probs=81.0

Q ss_pred             hhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC
Q 021691          127 LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV  206 (309)
Q Consensus       127 ~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~  206 (309)
                      ......-+.++|+|||+|+|..+..+++.+|..+++..|. |.+++.+++          ..+|++...|+- +.  .+ 
T Consensus        93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f-~~--~P-  157 (241)
T PF00891_consen   93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF-DP--LP-  157 (241)
T ss_dssp             HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT-TC--CS-
T ss_pred             hccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH-hh--hc-
Confidence            3333444567999999999999999999999999999995 999988887          246778777765 22  22 


Q ss_pred             CCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcC--CCeEEEEEeec
Q 021691          207 DTFDVIVASDCTFFK--EFHKDLARIIKFLLKKV--GPSEALFFSPK  249 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~--G~~~~ii~~~~  249 (309)
                      . +|+|+...++|+.  +....+++.+++.|+||  |  ++++....
T Consensus       158 ~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g--~llI~e~~  201 (241)
T PF00891_consen  158 V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDG--RLLIIEMV  201 (241)
T ss_dssp             S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTE--EEEEEEEE
T ss_pred             c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCC--eEEEEeec
Confidence            2 9999999999874  45667899999999998  7  67776643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.70  E-value=1e-07  Score=86.86  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=68.4

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+.+.+.......++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++..++.   ..++++...|...
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~---~~~v~ii~~Dal~   96 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPL---ASKLEVIEGDALK   96 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECCHhh
Confidence            344555666566678899999999999999998886  56899999999999999999887653   2356666665543


Q ss_pred             CCCCCCCCCccEEEEcCCCCC
Q 021691          200 DDFPYIVDTFDVIVASDCTFF  220 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~  220 (309)
                      ..    ...||+|+++-+.+.
T Consensus        97 ~~----~~~~d~VvaNlPY~I  113 (294)
T PTZ00338         97 TE----FPYFDVCVANVPYQI  113 (294)
T ss_pred             hc----ccccCEEEecCCccc
Confidence            22    236899998555443

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.70  E-value=1.1e-06  Score=76.68  Aligned_cols=148  Identities=18%  Similarity=0.125  Sum_probs=96.7

Q ss_pred             eecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          114 CHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       114 ~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      |+++.+..=+.|+.++. ...||+||=+| --=+.|+++|....+++|+.+|+++.+++.+++.++..++     .+++.
T Consensus        25 ~T~eT~~~Ra~~~~~~g-dL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-----~i~~~   97 (243)
T PF01861_consen   25 ATPETTLRRAALMAERG-DLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-----PIEAV   97 (243)
T ss_dssp             B-HHHHHHHHHHHHHTT--STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE
T ss_pred             ccHHHHHHHHHHHHhcC-cccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-----ceEEE
Confidence            48888888888888874 45799999998 3457788888877788999999999999999999999988     37888


Q ss_pred             EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-cCCchH---HHHHHHHHhCCCeEE
Q 021691          194 TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-KRGDSL---DKFLEEIEGNHLHFS  269 (309)
Q Consensus       194 ~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-~r~~~~---~~f~~~~~~~G~~~~  269 (309)
                      ..|......+...++||+++. |+.|-.+.+..++..-...|+..|.  ..+++. .+..+.   .++.+.+.+.|+.++
T Consensus        98 ~~DlR~~LP~~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~--~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~  174 (243)
T PF01861_consen   98 HYDLRDPLPEELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGC--AGYFGFTHKEASPDKWLEVQRFLLEMGLVIT  174 (243)
T ss_dssp             ---TTS---TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT---EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred             EecccccCCHHHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCc--eEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence            887776655556789999999 9999999999999988889987663  333333 233233   356667778999887


Q ss_pred             EE
Q 021691          270 II  271 (309)
Q Consensus       270 ~~  271 (309)
                      .+
T Consensus       175 di  176 (243)
T PF01861_consen  175 DI  176 (243)
T ss_dssp             EE
T ss_pred             HH
Confidence            64

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.69  E-value=2.1e-07  Score=85.74  Aligned_cols=136  Identities=16%  Similarity=0.220  Sum_probs=91.3

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ..|.+|+|+-||.|.+++.+|+. +..+|+++|+||.+++.+++|+++|+..   ..+.....|-....  ...+.||-|
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v~---~~v~~i~gD~rev~--~~~~~aDrI  260 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKVE---GRVEPILGDAREVA--PELGVADRI  260 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCcc---ceeeEEeccHHHhh--hccccCCEE
Confidence            35899999999999999998886 4445999999999999999999999984   33555555433221  112679999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe--ecCC---chHHHHHHHHHhCCCeEE-----EEeccCchhhh
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS--PKRG---DSLDKFLEEIEGNHLHFS-----IIENYNAEIWK  280 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~--~~r~---~~~~~f~~~~~~~G~~~~-----~~~~~~~~~~~  280 (309)
                      ++..+..    -..++....++++++|  .+.+..  +...   .....+...+.+.|.+++     .+..|.+.+|+
T Consensus       261 im~~p~~----a~~fl~~A~~~~k~~g--~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~h  332 (341)
T COG2520         261 IMGLPKS----AHEFLPLALELLKDGG--IIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYH  332 (341)
T ss_pred             EeCCCCc----chhhHHHHHHHhhcCc--EEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCeeE
Confidence            9975442    3456667777777787  332222  2221   133555666666665333     35556666664

>PRK04148 hypothetical protein; Provisional

Probab=98.67  E-value=1.6e-07  Score=75.06  Aligned_cols=99  Identities=19%  Similarity=0.267  Sum_probs=66.8

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCCh-hhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGL-AGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~-~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      .+++|+..+....++++|||+|||+|. ++..|++.  +.+|+++|+++.+++.++.+    +.       .+..-|+-+
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~~-------~~v~dDlf~   69 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----GL-------NAFVDDLFN   69 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----CC-------eEEECcCCC
Confidence            467787776655577899999999996 88888765  57999999999998888765    22       344444443


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .+. ..-..+|+|.+.-+      .+.+...+.++-+.-|
T Consensus        70 p~~-~~y~~a~liysirp------p~el~~~~~~la~~~~  102 (134)
T PRK04148         70 PNL-EIYKNAKLIYSIRP------PRDLQPFILELAKKIN  102 (134)
T ss_pred             CCH-HHHhcCCEEEEeCC------CHHHHHHHHHHHHHcC
Confidence            322 12356788877433      3455555555555544

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.67  E-value=1.7e-07  Score=84.04  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=66.0

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+++.+.+.....++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++..  .    .++.+...|...
T Consensus        15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~----~~v~ii~~D~~~   86 (258)
T PRK14896         15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--A----GNVEIIEGDALK   86 (258)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--C----CCEEEEEecccc
Confidence            445556666666678899999999999999999887  56899999999999999988753  1    245555555433


Q ss_pred             CCCCCCCCCccEEEEcCCCCC
Q 021691          200 DDFPYIVDTFDVIVASDCTFF  220 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~  220 (309)
                      ..    ...||.|+++.+.+.
T Consensus        87 ~~----~~~~d~Vv~NlPy~i  103 (258)
T PRK14896         87 VD----LPEFNKVVSNLPYQI  103 (258)
T ss_pred             CC----chhceEEEEcCCccc
Confidence            22    135899999766544

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.67  E-value=9.9e-08  Score=86.28  Aligned_cols=89  Identities=11%  Similarity=0.025  Sum_probs=63.9

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+++.+.......++.+|||+|||+|.++..+++..  .+|+++|.+++|++.+++++..       .++.+...|+...
T Consensus        29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~-------~~v~~i~~D~~~~   99 (272)
T PRK00274         29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE-------DNLTIIEGDALKV   99 (272)
T ss_pred             HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc-------CceEEEEChhhcC
Confidence            345556665566788899999999999999998873  4999999999999999887632       2456666665543


Q ss_pred             CCCCCCCCccEEEEcCCCCCc
Q 021691          201 DFPYIVDTFDVIVASDCTFFK  221 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~~  221 (309)
                      ..+.  ..+|.|+++.+ |+.
T Consensus       100 ~~~~--~~~~~vv~NlP-Y~i  117 (272)
T PRK00274        100 DLSE--LQPLKVVANLP-YNI  117 (272)
T ss_pred             CHHH--cCcceEEEeCC-ccc
Confidence            2211  11588888755 543

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.65  E-value=8.5e-07  Score=75.17  Aligned_cols=137  Identities=16%  Similarity=0.150  Sum_probs=86.7

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcE---------EEEEcCCHHHHHHHHHHHHhccCCCCCCce
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALE---------VVISDGNPQVVDYIQRNVDANSGAFGGTTV  190 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~---------V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v  190 (309)
                      ..||.-+.......+|..|||--||+|.+.+..|.......         ++++|+++++++.++.|+...+..   ..+
T Consensus        14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~---~~i   90 (179)
T PF01170_consen   14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE---DYI   90 (179)
T ss_dssp             HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C---GGE
T ss_pred             HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC---Cce
Confidence            56777777766667888999999999999888766544434         889999999999999999988773   345


Q ss_pred             EEEEeeCCCCCCCCCCCCccEEEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH
Q 021691          191 KSMTLHWNQDDFPYIVDTFDVIVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI  261 (309)
Q Consensus       191 ~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~  261 (309)
                      .+...|.  ...+...+.+|+|++ |+.|..         ..+..+++.+.+++++ .  .+++.. ...    .|.+.+
T Consensus        91 ~~~~~D~--~~l~~~~~~~d~Ivt-nPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~--~v~l~~-~~~----~~~~~~  159 (179)
T PF01170_consen   91 DFIQWDA--RELPLPDGSVDAIVT-NPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-R--AVFLTT-SNR----ELEKAL  159 (179)
T ss_dssp             EEEE--G--GGGGGTTSBSCEEEE-E--STTSHCHHHHHHHHHHHHHHHHHCHSTT-C--EEEEEE-SCC----CHHHHH
T ss_pred             EEEecch--hhcccccCCCCEEEE-CcchhhhccCHHHHHHHHHHHHHHHHHHCCC-C--EEEEEE-CCH----HHHHHh
Confidence            5554433  333344578999999 555552         2345566777777766 2  333333 332    245556


Q ss_pred             HhCCCeEEE
Q 021691          262 EGNHLHFSI  270 (309)
Q Consensus       262 ~~~G~~~~~  270 (309)
                      ...++....
T Consensus       160 ~~~~~~~~~  168 (179)
T PF01170_consen  160 GLKGWRKRK  168 (179)
T ss_dssp             TSTTSEEEE
T ss_pred             cchhhceEE
Confidence            666665543

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.65  E-value=5.7e-07  Score=78.69  Aligned_cols=137  Identities=11%  Similarity=0.085  Sum_probs=90.1

Q ss_pred             ccccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691          104 RCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG  183 (309)
Q Consensus       104 ~~~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~  183 (309)
                      +...+.||+. .=.....|.+|..... ..++.+||..|||.|.-...||..  +.+|+|+|+++.+++.+.+.   |++
T Consensus        15 rw~~~~~~f~-~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e---~~~   87 (226)
T PRK13256         15 RWQNDDVGFC-QESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQ---NTI   87 (226)
T ss_pred             HHhcCCCCCc-cCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHH---cCC
Confidence            3444667763 2223455656654432 235789999999999999999886  67899999999999988552   221


Q ss_pred             C-----------CCCCceEEEEeeCCCCCC-CCCCCCccEEEEcC--CCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          184 A-----------FGGTTVKSMTLHWNQDDF-PYIVDTFDVIVASD--CTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       184 ~-----------~~~~~v~~~~l~w~~~~~-~~~~~~fDvIi~~d--~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .           .....+++...|.-+... ....++||+|+-.-  |...++.....++.+.++|+|+|...++.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256         88 NYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             CcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            1           112345555554433221 12235899977544  4445778899999999999999965555544

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=98.64  E-value=3.2e-08  Score=87.92  Aligned_cols=127  Identities=25%  Similarity=0.268  Sum_probs=84.5

Q ss_pred             CCCceeecccHHHHHHHHhhC---cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHH-HHHHhccCC
Q 021691          109 NTGLVCHWPSEDVLAFFSLSH---ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQ-RNVDANSGA  184 (309)
Q Consensus       109 ~tG~~~~W~sa~~La~~l~~~---~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~-~n~~~n~~~  184 (309)
                      .-|++ +|+++..|..++...   .-.+.||+|||||||+|+.++.+... +...|.+.|.|.++++... .|+..|...
T Consensus        89 EGg~k-~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~~~t~pn~~~~~~~  166 (282)
T KOG2920|consen   89 EGGLK-LWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLRLVTLPNILVNSHA  166 (282)
T ss_pred             ecceE-EeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh-ccceeeeEecchhheeeecccceecchhh
Confidence            34677 999999999999865   34578999999999999999997665 4579999999998884322 222222111


Q ss_pred             C----CCCce-EEE---EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHH-HHHHHHHHhcCC
Q 021691          185 F----GGTTV-KSM---TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDL-ARIIKFLLKKVG  239 (309)
Q Consensus       185 ~----~~~~v-~~~---~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~l-l~~l~~lLk~~G  239 (309)
                      .    ....+ ...   ..||....  .....||+|+++..+|.....+.+ ......+++++|
T Consensus       167 ~~~~~e~~~~~~i~~s~l~dg~~~~--t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~  228 (282)
T KOG2920|consen  167 GVEEKENHKVDEILNSLLSDGVFNH--TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDG  228 (282)
T ss_pred             hhhhhhcccceeccccccccchhhh--ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccc
Confidence            0    00000 000   01331100  001379999999999998888877 666666777777

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.63  E-value=3.3e-07  Score=80.03  Aligned_cols=162  Identities=17%  Similarity=0.130  Sum_probs=98.2

Q ss_pred             ccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH-HHHhccCC
Q 021691          106 NIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQR-NVDANSGA  184 (309)
Q Consensus       106 ~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~-n~~~n~~~  184 (309)
                      ..+.||+. .=.....|.+|+.. ....++.+||..|||.|.-.+.||..  +.+|+|+|+++.+++.+.+ +.......
T Consensus        11 ~~~~~~w~-~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~   86 (218)
T PF05724_consen   11 QEGQTPWD-QGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVT   86 (218)
T ss_dssp             HTT--TT---TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECT
T ss_pred             hcCCCCCC-CCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcc
Confidence            34566654 33335667777776 34456779999999999999999986  6799999999999998843 21111111


Q ss_pred             -------CCCCceEEEEeeCCCCCCCCCCCCccEEEEcCC--CCCcccHHHHHHHHHHHHhcCCCeEEEEEeec----C-
Q 021691          185 -------FGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDC--TFFKEFHKDLARIIKFLLKKVGPSEALFFSPK----R-  250 (309)
Q Consensus       185 -------~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~--ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~----r-  250 (309)
                             ....+|++...|.-+.. +...++||+|+=..+  .-.++.++..++.+.++|+|+|...++.+...    . 
T Consensus        87 ~~~~~~~~~~~~i~~~~gDfF~l~-~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~G  165 (218)
T PF05724_consen   87 SVGGFKRYQAGRITIYCGDFFELP-PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEG  165 (218)
T ss_dssp             TCTTEEEETTSSEEEEES-TTTGG-GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSS
T ss_pred             cccceeeecCCceEEEEcccccCC-hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCC
Confidence                   01234455444433211 112358999987543  34478899999999999999994212222211    0 


Q ss_pred             -C--chHHHHHHHHHhCCCeEEEEec
Q 021691          251 -G--DSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       251 -~--~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                       +  -+.+++.+.+. .+|.++.++.
T Consensus       166 PPf~v~~~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  166 PPFSVTEEEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             SS----HHHHHHHHT-TTEEEEEEEE
T ss_pred             cCCCCCHHHHHHHhc-CCcEEEEEec
Confidence             1  13345555555 7888877765

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.63  E-value=2.5e-07  Score=87.03  Aligned_cols=101  Identities=22%  Similarity=0.137  Sum_probs=74.4

Q ss_pred             CCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      +.+|||+.||+|..|+.+++.. ++.+|+++|.++++++.+++|++.|+..    ++.+...|..... .....+||+|.
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~----~~~v~~~Da~~~l-~~~~~~fDvId  119 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE----NIEVPNEDAANVL-RYRNRKFHVID  119 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEchhHHHHH-HHhCCCCCEEE
Confidence            3589999999999999988875 5689999999999999999999999873    3444433322111 11135799999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      . |+ |.  ....+++.+.+.++++|  .+.+.
T Consensus       120 l-DP-fG--s~~~fld~al~~~~~~g--lL~vT  146 (374)
T TIGR00308       120 I-DP-FG--TPAPFVDSAIQASAERG--LLLVT  146 (374)
T ss_pred             e-CC-CC--CcHHHHHHHHHhcccCC--EEEEE
Confidence            8 88 43  33467888888888888  44444

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.61  E-value=3e-07  Score=75.34  Aligned_cols=131  Identities=16%  Similarity=0.099  Sum_probs=92.6

Q ss_pred             CCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCC
Q 021691          109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGG  187 (309)
Q Consensus       109 ~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~  187 (309)
                      +.|.  +-|++-.+|+-+......-.|+-|||+|.|||.++-++.++. ....+++++.+++....+.+.....++    
T Consensus        25 tVGa--I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~i----   98 (194)
T COG3963          25 TVGA--ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNI----   98 (194)
T ss_pred             eeee--ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccc----
Confidence            4565  789999999999998888899999999999999998876652 346899999999999988776443222    


Q ss_pred             CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                        +.....+............||.|+++-++-..  ...-.+++.+...|..||  .++.++..
T Consensus        99 --i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg--~lvqftYg  158 (194)
T COG3963          99 --INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGG--PLVQFTYG  158 (194)
T ss_pred             --cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCC--eEEEEEec
Confidence              11111111111122345789999998766553  344567888888888888  45555543

>PLN02823 spermine synthase

Probab=98.55  E-value=1e-06  Score=81.76  Aligned_cols=104  Identities=23%  Similarity=0.300  Sum_probs=72.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ..++||.||+|.|.....+++..+..+|+++|+++++++.+++.+..++-.....++++..-|.-... ....++||+|+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L-~~~~~~yDvIi  181 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL-EKRDEKFDVII  181 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH-hhCCCCccEEE
Confidence            45799999999999998877766678999999999999999998776542223345655544322111 12346899999


Q ss_pred             EcCCCCCc--c-----cHHHHHH-HHHHHHhcCC
Q 021691          214 ASDCTFFK--E-----FHKDLAR-IIKFLLKKVG  239 (309)
Q Consensus       214 ~~d~ly~~--~-----~~~~ll~-~l~~lLk~~G  239 (309)
                      + |+.-..  .     .-..+++ .+++.|+++|
T Consensus       182 ~-D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~G  214 (336)
T PLN02823        182 G-DLADPVEGGPCYQLYTKSFYERIVKPKLNPGG  214 (336)
T ss_pred             e-cCCCccccCcchhhccHHHHHHHHHHhcCCCc
Confidence            8 542110  0     0234666 8899999999

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.54  E-value=1e-06  Score=78.72  Aligned_cols=89  Identities=12%  Similarity=0.183  Sum_probs=62.1

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+.+.+.+.....++.+|||+|||+|.++..+++..  .+|+++|.++.+++.++.++..      ..++.+...|...
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~   86 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALK   86 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhc
Confidence            4445556665566678999999999999999998874  4799999999999999887643      1245555554433


Q ss_pred             CCCCCCCCCcc---EEEEcCCCCCc
Q 021691          200 DDFPYIVDTFD---VIVASDCTFFK  221 (309)
Q Consensus       200 ~~~~~~~~~fD---vIi~~d~ly~~  221 (309)
                      ...    ..||   +|+++-+ |+.
T Consensus        87 ~~~----~~~d~~~~vvsNlP-y~i  106 (253)
T TIGR00755        87 VDL----PDFPKQLKVVSNLP-YNI  106 (253)
T ss_pred             CCh----hHcCCcceEEEcCC-hhh
Confidence            222    1355   7777544 543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.53  E-value=7.3e-07  Score=76.60  Aligned_cols=126  Identities=15%  Similarity=0.162  Sum_probs=87.3

Q ss_pred             eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCCccEEEEc
Q 021691          137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDTFDVIVAS  215 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~fDvIi~~  215 (309)
                      -+||||||.|...+.+|+..+...++|+|.....+..+...+...++    .++.+...+...... -..++++|-|...
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l----~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL----KNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT----SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc----cceEEEEccHHHHHhhcccCCchheEEEe
Confidence            79999999999999999999999999999999999999999988877    467776665432111 1224688888774


Q ss_pred             CCC-CCcc-------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC--CCeEE
Q 021691          216 DCT-FFKE-------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN--HLHFS  269 (309)
Q Consensus       216 d~l-y~~~-------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~--G~~~~  269 (309)
                      -+= +...       .-+.++..+.++|++||   .+.+.+....-.+...+.+.+.  +|...
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG---~l~~~TD~~~y~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGG---ELYFATDVEEYAEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHHHHHHEEEEE---EEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred             CCCCCcccchhhhhcCCchHHHHHHHHcCCCC---EEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence            321 1111       24779999999999999   4444554445555666777773  56543

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.48  E-value=1.6e-06  Score=75.03  Aligned_cols=128  Identities=18%  Similarity=0.137  Sum_probs=87.1

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC-ccEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT-FDVIV  213 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~-fDvIi  213 (309)
                      +++++|+|+|.|++|+.+|-.++..+|+.+|....=+..++.-...-++.    ++++...+.++.  .. ..+ ||+|.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~----nv~i~~~RaE~~--~~-~~~~~D~vt  140 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE----NVEIVHGRAEEF--GQ-EKKQYDVVT  140 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC----CeEEehhhHhhc--cc-ccccCcEEE
Confidence            68999999999999999998888889999999887777777766665552    344443332211  11 123 99999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEecc
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                      +-.    ......++.-...+++++|...++.+.. -.+-..+...++...|+.++.+..+
T Consensus       141 sRA----va~L~~l~e~~~pllk~~g~~~~~k~~~-~~~e~~e~~~a~~~~~~~~~~~~~~  196 (215)
T COG0357         141 SRA----VASLNVLLELCLPLLKVGGGFLAYKGLA-GKDELPEAEKAILPLGGQVEKVFSL  196 (215)
T ss_pred             eeh----ccchHHHHHHHHHhcccCCcchhhhHHh-hhhhHHHHHHHHHhhcCcEEEEEEe
Confidence            943    3456788889999999988322112221 2234456667777778887766543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.44  E-value=5.6e-07  Score=77.40  Aligned_cols=108  Identities=13%  Similarity=0.185  Sum_probs=84.0

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      ...++|||||.|.+...+.+. +..+++.+|.+-.|++.++.. +.       ..+.+..+.-+++..++.++++|+||+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~-qd-------p~i~~~~~v~DEE~Ldf~ens~DLiis  143 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA-QD-------PSIETSYFVGDEEFLDFKENSVDLIIS  143 (325)
T ss_pred             CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc-CC-------CceEEEEEecchhcccccccchhhhhh
Confidence            357999999999999887665 467899999999999988753 11       344555555556666677899999999


Q ss_pred             cCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchH
Q 021691          215 SDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSL  254 (309)
Q Consensus       215 ~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~  254 (309)
                      +-.+|+..+.+..+..++..|||+|   .++.+-...+|+
T Consensus       144 SlslHW~NdLPg~m~~ck~~lKPDg---~FiasmlggdTL  180 (325)
T KOG2940|consen  144 SLSLHWTNDLPGSMIQCKLALKPDG---LFIASMLGGDTL  180 (325)
T ss_pred             hhhhhhhccCchHHHHHHHhcCCCc---cchhHHhccccH
Confidence            9999999999999999999999999   444443333433

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.42  E-value=2.5e-06  Score=79.08  Aligned_cols=129  Identities=12%  Similarity=0.081  Sum_probs=77.5

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC----CCceE
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG----GTTVK  191 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~----~~~v~  191 (309)
                      |--+..+..|+.......++.+|||||||-|.--.-... .+...++|+|++...|+.++++.....-...    .....
T Consensus        44 wvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~  122 (331)
T PF03291_consen   44 WVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFI  122 (331)
T ss_dssp             HHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred             HHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccch
Confidence            666777777765433333788999999997654333344 3578999999999999999998843211100    01122


Q ss_pred             EE--EeeCCCCC----CCCCCCCccEEEEcCCCCC----cccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          192 SM--TLHWNQDD----FPYIVDTFDVIVASDCTFF----KEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       192 ~~--~l~w~~~~----~~~~~~~fDvIi~~d~ly~----~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +.  ..|--...    ......+||+|=|-.++|.    .+....+++.+...|+|||  .+|...
T Consensus       123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG--~FIgT~  186 (331)
T PF03291_consen  123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG--YFIGTT  186 (331)
T ss_dssp             EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE--EEEEEE
T ss_pred             hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--EEEEEe
Confidence            22  22111110    1111358999999887776    4566779999999999999  444444

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.38  E-value=5.1e-06  Score=74.32  Aligned_cols=118  Identities=11%  Similarity=0.022  Sum_probs=81.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ..++||=+|.|-|.....+.+. + .+|+.+|+++++++.+++-+....-.+...++++..  |-.   ....++||+||
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~---~~~~~~fDVII  144 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLL---DLDIKKYDLII  144 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhh---hccCCcCCEEE
Confidence            4589999999999999998886 3 499999999999999999665533334455666553  211   11236899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----CchHHHHHHHHHhCCCe
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----GDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----~~~~~~f~~~~~~~G~~  267 (309)
                      . |.++.    +...+.+++.|+++|   +++.....    ...+....+.+++ .|.
T Consensus       145 v-Ds~~~----~~fy~~~~~~L~~~G---i~v~Qs~sp~~~~~~~~~i~~~l~~-~F~  193 (262)
T PRK00536        145 C-LQEPD----IHKIDGLKRMLKEDG---VFISVAKHPLLEHVSMQNALKNMGD-FFS  193 (262)
T ss_pred             E-cCCCC----hHHHHHHHHhcCCCc---EEEECCCCcccCHHHHHHHHHHHHh-hCC
Confidence            8 77665    456688999999999   33333222    2233444555555 465

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.38  E-value=2.6e-06  Score=70.69  Aligned_cols=78  Identities=18%  Similarity=0.143  Sum_probs=55.2

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC-CccEEEE
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD-TFDVIVA  214 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~-~fDvIi~  214 (309)
                      +.|+|+.||.|..++.+|+.  ..+|+++|+++.-++.+++|++.-|..   .+|.+...||.+........ .||+|++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~---~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVA---DNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-G---GGEEEEES-HHHHGGGB------SEEEE
T ss_pred             CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEeCCHHHHHhhccccccccEEEE
Confidence            36999999999999999997  568999999999999999999998873   57888888886543222112 2899999


Q ss_pred             cCCC
Q 021691          215 SDCT  218 (309)
Q Consensus       215 ~d~l  218 (309)
                      +++.
T Consensus        76 SPPW   79 (163)
T PF09445_consen   76 SPPW   79 (163)
T ss_dssp             ---B
T ss_pred             CCCC
Confidence            7754

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=2.1e-06  Score=81.91  Aligned_cols=114  Identities=16%  Similarity=0.159  Sum_probs=81.3

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      .++++|..++.++..+..++.++|+-||||..|+.+|+.  ..+|+++++++++++.|+.|+..|++.    +.++....
T Consensus       366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ngis----Na~Fi~gq  439 (534)
T KOG2187|consen  366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGIS----NATFIVGQ  439 (534)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCcc----ceeeeecc
Confidence            457899999999998889999999999999999998886  789999999999999999999999985    33333331


Q ss_pred             CCCC---CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhc
Q 021691          197 WNQD---DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKK  237 (309)
Q Consensus       197 w~~~---~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~  237 (309)
                      -++.   ......++-++|...|+.- ...+..+++.++..-++
T Consensus       440 aE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~  482 (534)
T KOG2187|consen  440 AEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNP  482 (534)
T ss_pred             hhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCc
Confidence            1111   0111112345555556554 44556666666665443

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.28  E-value=1.4e-05  Score=77.38  Aligned_cols=130  Identities=17%  Similarity=0.158  Sum_probs=86.5

Q ss_pred             CCceeeccc-HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCC
Q 021691          110 TGLVCHWPS-EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGG  187 (309)
Q Consensus       110 tG~~~~W~s-a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~  187 (309)
                      .|+.++=+. +...+..+..  ...+|.+|||++||.|.=+..+|...+. +.|++.|+++.-+..+++|++..|+.   
T Consensus        90 ~G~~yvQd~sS~l~~~~L~~--~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~---  164 (470)
T PRK11933         90 SGLFYIQEASSMLPVAALFA--DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS---  164 (470)
T ss_pred             CCcEEEECHHHHHHHHHhcc--CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---
Confidence            355544443 4444444432  3357899999999999998888887643 58999999999999999999998873   


Q ss_pred             CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC-------cc----------------cHHHHHHHHHHHHhcCCCeEEE
Q 021691          188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF-------KE----------------FHKDLARIIKFLLKKVGPSEAL  244 (309)
Q Consensus       188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~-------~~----------------~~~~ll~~l~~lLk~~G~~~~i  244 (309)
                       ++.+...|-.... ......||.|+. |+.-.       ..                .-..++....++|+|||  .++
T Consensus       165 -nv~v~~~D~~~~~-~~~~~~fD~ILv-DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG--~LV  239 (470)
T PRK11933        165 -NVALTHFDGRVFG-AALPETFDAILL-DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGG--TLV  239 (470)
T ss_pred             -eEEEEeCchhhhh-hhchhhcCeEEE-cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCc--EEE
Confidence             4444443322111 122457999997 32211       11                12567888889999999  566


Q ss_pred             EEeec
Q 021691          245 FFSPK  249 (309)
Q Consensus       245 i~~~~  249 (309)
                      ++++.
T Consensus       240 YSTCT  244 (470)
T PRK11933        240 YSTCT  244 (470)
T ss_pred             EECCC
Confidence            65543

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.25  E-value=6.1e-06  Score=74.85  Aligned_cols=84  Identities=15%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             CCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc-cCCCCCCceEEEEeeCCCCC---CCCCCCCc
Q 021691          135 SKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN-SGAFGGTTVKSMTLHWNQDD---FPYIVDTF  209 (309)
Q Consensus       135 g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l~w~~~~---~~~~~~~f  209 (309)
                      .-++||+|+|. ++..+..++.+ +-+++|||+++..++.|++|++.| ++.   .+|.+....-...-   .....+.|
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~---~~I~l~~~~~~~~i~~~i~~~~e~~  178 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLE---SRIELRKQKNPDNIFDGIIQPNERF  178 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-T---TTEEEEE--ST-SSTTTSTT--S-E
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccc---cceEEEEcCCccccchhhhccccee
Confidence            56899999996 57777767665 679999999999999999999999 773   56666554321111   11224689


Q ss_pred             cEEEEcCCCCCcc
Q 021691          210 DVIVASDCTFFKE  222 (309)
Q Consensus       210 DvIi~~d~ly~~~  222 (309)
                      |+.+|++++|...
T Consensus       179 dftmCNPPFy~s~  191 (299)
T PF05971_consen  179 DFTMCNPPFYSSQ  191 (299)
T ss_dssp             EEEEE-----SS-
T ss_pred             eEEecCCccccCh
Confidence            9999999988743

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=5.3e-06  Score=70.57  Aligned_cols=118  Identities=18%  Similarity=0.186  Sum_probs=77.5

Q ss_pred             cHHHHHHHHhhCc--CcCCCCeEEEeCCCCChhhHHHHHhcCCc--EEEEEcCCHHHHHHHHHHHHhccCC------CCC
Q 021691          118 SEDVLAFFSLSHA--DMFRSKRVIELGSGYGLAGLVIAATTEAL--EVVISDGNPQVVDYIQRNVDANSGA------FGG  187 (309)
Q Consensus       118 sa~~La~~l~~~~--~~~~g~~VLELG~GtG~~~l~la~~~~~~--~V~~tD~~~~~l~~~~~n~~~n~~~------~~~  187 (309)
                      |+..+-.++++..  .+.+|.+.||+|+|+|.++-.++...++.  .++++|.-++.++..++|+...--.      +..
T Consensus        64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~  143 (237)
T KOG1661|consen   64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR  143 (237)
T ss_pred             cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence            3444433444332  36789999999999999988878666543  3499999999999999999875421      123


Q ss_pred             CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      +++.+...|....  .....+||.|.+.      .....+.+.+-..|+++|  .+++
T Consensus       144 ~~l~ivvGDgr~g--~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gG--rlli  191 (237)
T KOG1661|consen  144 GELSIVVGDGRKG--YAEQAPYDAIHVG------AAASELPQELLDQLKPGG--RLLI  191 (237)
T ss_pred             CceEEEeCCcccc--CCccCCcceEEEc------cCccccHHHHHHhhccCC--eEEE
Confidence            4444444332221  1234689999874      233455666777788888  4444

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.24  E-value=2.5e-05  Score=79.72  Aligned_cols=127  Identities=16%  Similarity=0.050  Sum_probs=84.5

Q ss_pred             ccHHHHHHHHhhCcCc-CCCCeEEEeCCCCChhhHHHHHhc---------------------------------------
Q 021691          117 PSEDVLAFFSLSHADM-FRSKRVIELGSGYGLAGLVIAATT---------------------------------------  156 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~-~~g~~VLELG~GtG~~~l~la~~~---------------------------------------  156 (309)
                      |--..||.-++..... .++..++|-+||+|.+.+..|...                                       
T Consensus       172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            3446788777765544 457899999999999988866531                                       


Q ss_pred             ---CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc----ccHHHHHH
Q 021691          157 ---EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK----EFHKDLAR  229 (309)
Q Consensus       157 ---~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~----~~~~~ll~  229 (309)
                         ...+++|+|+++.+++.++.|+..+++.   ..+.+...|+.+...+...++||+|+++.+....    .....+..
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~---~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~  328 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQAARKNARRAGVA---ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYS  328 (702)
T ss_pred             ccccCceEEEEECCHHHHHHHHHHHHHcCCC---cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence               0126999999999999999999999983   3566666666543332223579999996554321    23344555


Q ss_pred             HHHHHHh---cCCCeEEEEEee
Q 021691          230 IIKFLLK---KVGPSEALFFSP  248 (309)
Q Consensus       230 ~l~~lLk---~~G~~~~ii~~~  248 (309)
                      .+-..++   +++  .+.+++.
T Consensus       329 ~lg~~lk~~~~g~--~~~llt~  348 (702)
T PRK11783        329 QLGRRLKQQFGGW--NAALFSS  348 (702)
T ss_pred             HHHHHHHHhCCCC--eEEEEeC
Confidence            5555555   455  4444443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.21  E-value=7e-06  Score=68.24  Aligned_cols=82  Identities=9%  Similarity=-0.068  Sum_probs=60.8

Q ss_pred             EEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCe
Q 021691          162 VISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPS  241 (309)
Q Consensus       162 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~  241 (309)
                      +|+|.+++|++.++++....+.. ...++++...|..  ..+..+++||+|+++.++++..+...+++.++++|||||  
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~--~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG--   75 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAI--DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGS--   75 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechh--hCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCe--
Confidence            48999999999998776543211 0124555555433  345556789999999999998999999999999999999  


Q ss_pred             EEEEEee
Q 021691          242 EALFFSP  248 (309)
Q Consensus       242 ~~ii~~~  248 (309)
                      .+++...
T Consensus        76 ~l~i~d~   82 (160)
T PLN02232         76 RVSILDF   82 (160)
T ss_pred             EEEEEEC
Confidence            5555543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.20  E-value=1.6e-05  Score=71.85  Aligned_cols=102  Identities=21%  Similarity=0.217  Sum_probs=73.3

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      ++||-||-|.|.....+.+..+..+++.+|+++.+++.+++-+..........++....-|..+-- .....+||+||. 
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v-~~~~~~fDvIi~-  155 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL-RDCEEKFDVIIV-  155 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH-HhCCCcCCEEEE-
Confidence            799999999999999999988788999999999999999988765432111344544433322111 112348999999 


Q ss_pred             CCCCCcc-----cHHHHHHHHHHHHhcCC
Q 021691          216 DCTFFKE-----FHKDLARIIKFLLKKVG  239 (309)
Q Consensus       216 d~ly~~~-----~~~~ll~~l~~lLk~~G  239 (309)
                      |+.-...     .-..+.+.+++.|+++|
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~G  184 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALKEDG  184 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcCCCc
Confidence            5543311     12678899999999999

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.20  E-value=1.5e-05  Score=69.91  Aligned_cols=108  Identities=14%  Similarity=0.047  Sum_probs=78.6

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-CCCCccEEEE
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY-IVDTFDVIVA  214 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~-~~~~fDvIi~  214 (309)
                      ..+||||||.|-.-+.+|+..|...++|+|+....+..+.+.+...++.    ++.+...|........ .+++.|-|..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~----Nlri~~~DA~~~l~~~~~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK----NLRLLCGDAVEVLDYLIPDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC----cEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence            4799999999999999999999999999999999999999998888772    5666555433222122 2347888766


Q ss_pred             cCC-CCCcc-------cHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          215 SDC-TFFKE-------FHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       215 ~d~-ly~~~-------~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      .-+ .++..       ..+.+++.+.+.|++||   .+.+.+..
T Consensus       126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG---~l~~aTD~  166 (227)
T COG0220         126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGG---VLHFATDN  166 (227)
T ss_pred             ECCCCCCCccccccccCCHHHHHHHHHHccCCC---EEEEEecC
Confidence            432 22221       24789999999999999   44444443

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.18  E-value=1.5e-05  Score=70.46  Aligned_cols=97  Identities=18%  Similarity=0.268  Sum_probs=69.4

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      +-....++.. +.+...+.++..|||+|.|||.++..+...  +++|+|++.+|.|+..+++.++....   ....++..
T Consensus        40 ilkNp~v~~~-I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~---~~kLqV~~  113 (315)
T KOG0820|consen   40 ILKNPLVIDQ-IVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPK---SGKLQVLH  113 (315)
T ss_pred             hhcCHHHHHH-HHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCc---cceeeEEe
Confidence            3334455554 444556778899999999999999998886  78999999999999999998765433   34556665


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcc
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKE  222 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~  222 (309)
                      .|.-..+    ...||.+|++ ..|..+
T Consensus       114 gD~lK~d----~P~fd~cVsN-lPyqIS  136 (315)
T KOG0820|consen  114 GDFLKTD----LPRFDGCVSN-LPYQIS  136 (315)
T ss_pred             cccccCC----Ccccceeecc-CCcccc
Confidence            5443333    2569999994 445443

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.16  E-value=1.1e-05  Score=71.79  Aligned_cols=133  Identities=17%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC-CccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD-TFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~-~fDvI  212 (309)
                      +.++||=||.|.|.....+.+..+..+|+++|+++.+++.+++-+..........++++..-|...-. ..... +||+|
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l-~~~~~~~yDvI  154 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL-KETQEEKYDVI  154 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH-HTSSST-EEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH-HhccCCcccEE
Confidence            57899999999999988887765568999999999999999998776443223445655443221100 11123 89999


Q ss_pred             EEcCCCCC--cc---cHHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeEEE
Q 021691          213 VASDCTFF--KE---FHKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       213 i~~d~ly~--~~---~~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      +. |+.-.  ..   .-...++.+++.|+++|  .+++-...   ....+....+.+++....+..
T Consensus       155 i~-D~~dp~~~~~~l~t~ef~~~~~~~L~~~G--v~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~  217 (246)
T PF01564_consen  155 IV-DLTDPDGPAPNLFTREFYQLCKRRLKPDG--VLVLQAGSPFLHPELFKSILKTLRSVFPQVKP  217 (246)
T ss_dssp             EE-ESSSTTSCGGGGSSHHHHHHHHHHEEEEE--EEEEEEEETTTTHHHHHHHHHHHHTTSSEEEE
T ss_pred             EE-eCCCCCCCcccccCHHHHHHHHhhcCCCc--EEEEEccCcccchHHHHHHHHHHHHhCCceEE
Confidence            98 44321  11   13678899999999999  44433322   233444556667777665443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.16  E-value=1.6e-05  Score=68.59  Aligned_cols=130  Identities=17%  Similarity=0.140  Sum_probs=81.2

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ...++||.|||.|.++-.+.... ..+|-.+|..+..++.+++.+......  ..++-...+    .+......+||+|+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~--v~~~~~~gL----Q~f~P~~~~YDlIW  127 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPR--VGEFYCVGL----QDFTPEEGKYDLIW  127 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCC--EEEEEES-G----GG----TT-EEEEE
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCC--cceEEecCH----hhccCCCCcEeEEE
Confidence            45699999999999987543322 579999999999999999765542211  011111111    11112246899999


Q ss_pred             EcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEe-----------ecC---CchHHHHHHHHHhCCCeEEEEe
Q 021691          214 ASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFS-----------PKR---GDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       214 ~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~-----------~~r---~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      +--|+-|  ..+.-.+++..+..|+|+|  .+++=.           ...   ..+.+.|.+.++++|+.+...+
T Consensus       128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G--~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~  200 (218)
T PF05891_consen  128 IQWCLGHLTDEDLVAFLKRCKQALKPNG--VIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE  200 (218)
T ss_dssp             EES-GGGS-HHHHHHHHHHHHHHEEEEE--EEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred             ehHhhccCCHHHHHHHHHHHHHhCcCCc--EEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence            9888877  4567778889999999998  333211           000   2356889999999999986544

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.12  E-value=6.2e-06  Score=71.29  Aligned_cols=135  Identities=17%  Similarity=0.195  Sum_probs=88.0

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..+|.+|||-..|-|..++.++++ |+.+|+.++.+|.+++.+.-|==..++.  ...+.+...|-.+.-..+.+.+||+
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~--~~~i~iilGD~~e~V~~~~D~sfDa  208 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELF--EIAIKIILGDAYEVVKDFDDESFDA  208 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCcccc--ccccEEecccHHHHHhcCCccccce
Confidence            457999999999999999997665 6669999999999999887542111111  1123333332222222345678999


Q ss_pred             EEEcCCCCCcc---cHHHHHHHHHHHHhcCCCeEEEEEeec---C-CchHHHHHHHHHhCCCeEE
Q 021691          212 IVASDCTFFKE---FHKDLARIIKFLLKKVGPSEALFFSPK---R-GDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       212 Ii~~d~ly~~~---~~~~ll~~l~~lLk~~G~~~~ii~~~~---r-~~~~~~f~~~~~~~G~~~~  269 (309)
                      ||--.+=+...   .-+.+-+++.++|++||+..-.+..|.   | .+......+.+++.||.+.
T Consensus       209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v  273 (287)
T COG2521         209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV  273 (287)
T ss_pred             EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence            98833322211   235677899999999995333333333   2 3445678889999999853

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.12  E-value=7.3e-06  Score=72.96  Aligned_cols=138  Identities=21%  Similarity=0.209  Sum_probs=86.0

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-------------C-----------
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-------------G-----------  186 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-------------~-----------  186 (309)
                      ...+|.++||+|||.-+..+..|.. -..+++++|..+..++.+++-++..+ .+             +           
T Consensus        53 g~~~g~~llDiGsGPtiy~~lsa~~-~f~~I~l~dy~~~N~~el~kWl~~~~-a~DWs~~~~~v~~lEg~~~~~~e~e~~  130 (256)
T PF01234_consen   53 GGVKGETLLDIGSGPTIYQLLSACE-WFEEIVLSDYSEQNREELEKWLRKEG-AFDWSPFWKYVCELEGKREKWEEKEEK  130 (256)
T ss_dssp             SSS-EEEEEEES-TT--GGGTTGGG-TEEEEEEEESSHHHHHHHHHHHTT-T-S--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred             cCcCCCEEEEeCCCcHHHhhhhHHH-hhcceEEeeccHhhHHHHHHHHCCCC-CCCccHHHHHHHhccCCcchhhhHHHH
Confidence            4567889999999987665443322 35689999999999999988876542 11             0           


Q ss_pred             -CCceE-EEEeeCCCCCCCC----CCCCccEEEEcCCCC----CcccHHHHHHHHHHHHhcCCCeEEEEEeecC------
Q 021691          187 -GTTVK-SMTLHWNQDDFPY----IVDTFDVIVASDCTF----FKEFHKDLARIIKFLLKKVGPSEALFFSPKR------  250 (309)
Q Consensus       187 -~~~v~-~~~l~w~~~~~~~----~~~~fDvIi~~d~ly----~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r------  250 (309)
                       +..|+ +...|....+.-.    ..++||+|+++-|+-    +.+.+...++.+.++|||||  .+++....+      
T Consensus       131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG--~Lil~~~l~~t~Y~v  208 (256)
T PF01234_consen  131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGG--HLILAGVLGSTYYMV  208 (256)
T ss_dssp             HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEE--EEEEEEESS-SEEEE
T ss_pred             HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCc--EEEEEEEcCceeEEE
Confidence             01132 2223332222111    123599999988764    35678889999999999999  555544221      


Q ss_pred             --------CchHHHHHHHHHhCCCeEEEEe
Q 021691          251 --------GDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       251 --------~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                              .-+.+...+.++++|+.+...+
T Consensus       209 G~~~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  209 GGHKFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             TTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             CCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence                    2245667788999999987766

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.12  E-value=2.8e-05  Score=67.21  Aligned_cols=114  Identities=18%  Similarity=0.096  Sum_probs=83.2

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--  201 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--  201 (309)
                      |+.....+...+++||||.=||.-++..|...+ .++|++.|++++..+....-++..+..   .+|++....--+..  
T Consensus        64 fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~---~KI~~i~g~a~esLd~  140 (237)
T KOG1663|consen   64 FLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD---HKITFIEGPALESLDE  140 (237)
T ss_pred             HHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc---ceeeeeecchhhhHHH
Confidence            333333456789999999999998888888776 469999999999999998888888773   56666554322110  


Q ss_pred             --CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          202 --FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       202 --~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                        .....++||+++. |  ++..........+-+|+++||   +++++
T Consensus       141 l~~~~~~~tfDfaFv-D--adK~nY~~y~e~~l~Llr~GG---vi~~D  182 (237)
T KOG1663|consen  141 LLADGESGTFDFAFV-D--ADKDNYSNYYERLLRLLRVGG---VIVVD  182 (237)
T ss_pred             HHhcCCCCceeEEEE-c--cchHHHHHHHHHHHhhccccc---EEEEe
Confidence              0123578999998 3  345666688889999999999   55554

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=2.6e-05  Score=69.36  Aligned_cols=91  Identities=14%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+.+.+....+..++.+|||+|+|.|.++..|++.  +.+|+++++++.+++.+++....      ..++.+...|.-..
T Consensus        17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~   88 (259)
T COG0030          17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKF   88 (259)
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcC
Confidence            34566666667777899999999999999999997  67899999999999999987651      13445554443333


Q ss_pred             CCCCCCCCccEEEEcCCCCC
Q 021691          201 DFPYIVDTFDVIVASDCTFF  220 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~  220 (309)
                      +.+... +++.|+++-+.+-
T Consensus        89 d~~~l~-~~~~vVaNlPY~I  107 (259)
T COG0030          89 DFPSLA-QPYKVVANLPYNI  107 (259)
T ss_pred             cchhhc-CCCEEEEcCCCcc
Confidence            322211 6788999555443

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.10  E-value=3.4e-05  Score=71.01  Aligned_cols=144  Identities=13%  Similarity=0.042  Sum_probs=83.7

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHh-------cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAAT-------TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS  192 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~-------~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~  192 (309)
                      ..+++++........+.+|+|-.||+|.+.+.+...       ....+++|.|+++.++..++.|+..++...  .....
T Consensus        32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~--~~~~i  109 (311)
T PF02384_consen   32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN--SNINI  109 (311)
T ss_dssp             HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC--BGCEE
T ss_pred             HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc--ccccc
Confidence            445555555445567889999999999887776653       256789999999999999999988776532  11223


Q ss_pred             EEeeCCCCCCCCCCCCccEEEEcCCCCCc--c-------------------cHHHHHHHHHHHHhcCCCeEEEEEee--c
Q 021691          193 MTLHWNQDDFPYIVDTFDVIVASDCTFFK--E-------------------FHKDLARIIKFLLKKVGPSEALFFSP--K  249 (309)
Q Consensus       193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~~--~-------------------~~~~ll~~l~~lLk~~G~~~~ii~~~--~  249 (309)
                      ...+.-.........+||+|+++.++-..  .                   .--.++..+.+.|+++|+..+++-..  .
T Consensus       110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~  189 (311)
T PF02384_consen  110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLF  189 (311)
T ss_dssp             EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHH
T ss_pred             cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhh
Confidence            33322111111124689999997765433  0                   11246677888999999433333321  1


Q ss_pred             CCchHHHHHHHHHhCC
Q 021691          250 RGDSLDKFLEEIEGNH  265 (309)
Q Consensus       250 r~~~~~~f~~~~~~~G  265 (309)
                      +......+.+.+-+.+
T Consensus       190 ~~~~~~~iR~~ll~~~  205 (311)
T PF02384_consen  190 SSSSEKKIRKYLLENG  205 (311)
T ss_dssp             GSTHHHHHHHHHHHHE
T ss_pred             ccchHHHHHHHHHhhc
Confidence            2233456666665543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=0.00014  Score=64.28  Aligned_cols=131  Identities=15%  Similarity=0.076  Sum_probs=93.2

Q ss_pred             hCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC
Q 021691          128 SHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV  206 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~  206 (309)
                      +..+..+|.+|||-|+|+|.++.++++..+ .++++-.|.+..-.+.+.+-.+..++   ..++++..-|..........
T Consensus        99 ~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi---~~~vt~~hrDVc~~GF~~ks  175 (314)
T KOG2915|consen   99 SMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI---GDNVTVTHRDVCGSGFLIKS  175 (314)
T ss_pred             HHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC---CcceEEEEeecccCCccccc
Confidence            334677899999999999999999998763 46899999998888888888888887   35677777766555443335


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      ..+|.|+. |..    .+...+..+...|+.+|. .++-+++. -+..++-.+++.+.||.-
T Consensus       176 ~~aDaVFL-DlP----aPw~AiPha~~~lk~~g~-r~csFSPC-IEQvqrtce~l~~~gf~~  230 (314)
T KOG2915|consen  176 LKADAVFL-DLP----APWEAIPHAAKILKDEGG-RLCSFSPC-IEQVQRTCEALRSLGFIE  230 (314)
T ss_pred             cccceEEE-cCC----ChhhhhhhhHHHhhhcCc-eEEeccHH-HHHHHHHHHHHHhCCCce
Confidence            67899988 443    344555666668888773 23333332 244456778888888753

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.10  E-value=5e-05  Score=65.01  Aligned_cols=128  Identities=16%  Similarity=0.191  Sum_probs=77.7

Q ss_pred             ecccHHH--HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE
Q 021691          115 HWPSEDV--LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS  192 (309)
Q Consensus       115 ~W~sa~~--La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~  192 (309)
                      .||--.+  ..+|+...+   .+..|-|+|||-+.++..+.   ...+|..-|.-.           .|      ..|.+
T Consensus        54 ~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva-----------~n------~~Vta  110 (219)
T PF05148_consen   54 KWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVA-----------PN------PRVTA  110 (219)
T ss_dssp             TSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH-----S---EEEEESS------------SS------TTEEE
T ss_pred             cCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc---cCceEEEeeccC-----------CC------CCEEE
Confidence            6887654  677776543   45689999999998774431   234688888632           11      12322


Q ss_pred             EEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-cCCchHHHHHHHHHhCCCeEEEE
Q 021691          193 MTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-KRGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-~r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                        -|.  ...|..+++.|++|.+-.+-. .++...+.+..|+||++|  .++++.. .|-...+.|.+.++..||.....
T Consensus       111 --cdi--a~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G--~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~  183 (219)
T PF05148_consen  111 --CDI--ANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGG--ILKIAEVKSRFENVKQFIKALKKLGFKLKSK  183 (219)
T ss_dssp             --S-T--TS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEE--EEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE
T ss_pred             --ecC--ccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCc--EEEEEEecccCcCHHHHHHHHHHCCCeEEec
Confidence              222  344556789999998766654 467899999999999999  6666654 46667799999999999998765


Q ss_pred             e
Q 021691          272 E  272 (309)
Q Consensus       272 ~  272 (309)
                      .
T Consensus       184 d  184 (219)
T PF05148_consen  184 D  184 (219)
T ss_dssp             E
T ss_pred             c
Confidence            4

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.09  E-value=5.9e-05  Score=74.51  Aligned_cols=82  Identities=11%  Similarity=0.143  Sum_probs=54.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCC--------cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC---C
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEA--------LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD---F  202 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~--------~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~---~  202 (309)
                      .+.+|||.|||+|.+.+.++.....        ..+++.|+++.++..++.|+...+..    .+.+...+.-...   .
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~----~~~i~~~d~l~~~~~~~  106 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL----EINVINFNSLSYVLLNI  106 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC----Cceeeeccccccccccc
Confidence            4569999999999998887766531        47899999999999999998776511    1122211111110   0


Q ss_pred             CCCCCCccEEEEcCCCC
Q 021691          203 PYIVDTFDVIVASDCTF  219 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly  219 (309)
                      ....+.||+||++.+.-
T Consensus       107 ~~~~~~fD~IIgNPPy~  123 (524)
T TIGR02987       107 ESYLDLFDIVITNPPYG  123 (524)
T ss_pred             ccccCcccEEEeCCCcc
Confidence            11235799999976654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.09  E-value=3.6e-06  Score=71.38  Aligned_cols=134  Identities=18%  Similarity=0.176  Sum_probs=91.2

Q ss_pred             cHHHHHHHHhhCcCc--CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          118 SEDVLAFFSLSHADM--FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       118 sa~~La~~l~~~~~~--~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      |.....+++.-....  ....++||||+|-|-++..++-.  -.+|.+|+.|..|...+++.    +.     + ....+
T Consensus        94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~--feevyATElS~tMr~rL~kk----~y-----n-Vl~~~  161 (288)
T KOG3987|consen   94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT--FEEVYATELSWTMRDRLKKK----NY-----N-VLTEI  161 (288)
T ss_pred             cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch--HHHHHHHHhhHHHHHHHhhc----CC-----c-eeeeh
Confidence            445556666554322  23479999999999999887665  45799999999998888753    11     1 12345


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhc-CCCeEEEEEee-------------cCC----------
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKK-VGPSEALFFSP-------------KRG----------  251 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~-~G~~~~ii~~~-------------~r~----------  251 (309)
                      +|.+.     +-+||+|.|-..+-...+.-.|++.++.+|+| +|+..+-+.-|             .|+          
T Consensus       162 ew~~t-----~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~  236 (288)
T KOG3987|consen  162 EWLQT-----DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRS  236 (288)
T ss_pred             hhhhc-----CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCcc
Confidence            56543     34699999988776667788999999999999 67432211111             121          


Q ss_pred             --chHHHHHHHHHhCCCeE
Q 021691          252 --DSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       252 --~~~~~f~~~~~~~G~~~  268 (309)
                        +....|.+.++++|+.+
T Consensus       237 ~ee~v~~~~e~lr~~g~~v  255 (288)
T KOG3987|consen  237 FEEEVARFMELLRNCGYRV  255 (288)
T ss_pred             HHHHHHHHHHHHHhcCchh
Confidence              12346888899999887

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.06  E-value=3.9e-05  Score=75.28  Aligned_cols=128  Identities=16%  Similarity=0.101  Sum_probs=86.1

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      .+..+||||||.|-..+.+|+..|...++|+|.....+..+.+.+...++    .++.+...+...-......+++|-|.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l----~N~~~~~~~~~~~~~~~~~~sv~~i~  422 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI----TNFLLFPNNLDLILNDLPNNSLDGIY  422 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHhcCcccccEEE
Confidence            35689999999999999999999999999999999988888888777666    34544433322111123456788887


Q ss_pred             EcCCCCCcc--------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCC-CeE
Q 021691          214 ASDCTFFKE--------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH-LHF  268 (309)
Q Consensus       214 ~~d~ly~~~--------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G-~~~  268 (309)
                      ...+==+++        ..+.+++.+.++|++||   .+.+.+....-....++.+.+.+ |..
T Consensus       423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG---~i~~~TD~~~y~~~~~~~~~~~~~f~~  483 (506)
T PRK01544        423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNG---NLVFASDIENYFYEAIELIQQNGNFEI  483 (506)
T ss_pred             EECCCCCCCCCCccccccCHHHHHHHHHhcCCCC---EEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence            743322211        24779999999999999   44444443333334455566654 543

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.04  E-value=8.4e-06  Score=68.18  Aligned_cols=94  Identities=18%  Similarity=0.290  Sum_probs=68.5

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      ..+.|||+|+|.++...|+.  +.+|++++.+|.....+++|+..++.    .++.+...|-..-+.    ...|+|+|-
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~----~n~evv~gDA~~y~f----e~ADvvicE  103 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGD----VNWEVVVGDARDYDF----ENADVVICE  103 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCC----cceEEEecccccccc----cccceeHHH
Confidence            58999999999999997776  88999999999999999999987776    355555543322221    457999883


Q ss_pred             --CCCCCcccHHHHHHHHHHHHhcCC
Q 021691          216 --DCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       216 --d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                        |..-..+..-..++.+...|+.++
T Consensus       104 mlDTaLi~E~qVpV~n~vleFLr~d~  129 (252)
T COG4076         104 MLDTALIEEKQVPVINAVLEFLRYDP  129 (252)
T ss_pred             HhhHHhhcccccHHHHHHHHHhhcCC
Confidence              222233444556667777888877

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.04  E-value=2.3e-05  Score=63.45  Aligned_cols=58  Identities=21%  Similarity=0.251  Sum_probs=48.7

Q ss_pred             eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      .|+|+|||.|..++.+++..+..+|+++|.+|.+.+.+++|++.|+..    ++.+....+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~----~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP----NVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC----cEEEEEeeee
Confidence            489999999999999988766669999999999999999999999863    3555555444

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.02  E-value=2.3e-05  Score=70.85  Aligned_cols=105  Identities=17%  Similarity=0.143  Sum_probs=70.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCC--ceEEEEeeCCCC----CCCCCCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGT--TVKSMTLHWNQD----DFPYIVD  207 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~--~v~~~~l~w~~~----~~~~~~~  207 (309)
                      ++..+++||||-|.-.+-.-+ .+...++++|+.+-.++.+++..+...-....-  .+.+...|-...    ..+..+.
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~k-AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDK-AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             cccccceeccCCcccHhHhhh-hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            577899999998766555444 356799999999999999998876432211111  122222222111    1122345


Q ss_pred             CccEEEEcCCCCC----cccHHHHHHHHHHHHhcCC
Q 021691          208 TFDVIVASDCTFF----KEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       208 ~fDvIi~~d~ly~----~~~~~~ll~~l~~lLk~~G  239 (309)
                      +||+|=|--++|.    .+....++..+.+.|+|||
T Consensus       196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG  231 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG  231 (389)
T ss_pred             CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc
Confidence            5999988777765    4567778999999999999

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.01  E-value=1.1e-05  Score=69.31  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=63.9

Q ss_pred             CCCeEEEeCCCCC----hhhHHHHHhc---C--CcEEEEEcCCHHHHHHHHHHHH-hccCC--------------CC---
Q 021691          134 RSKRVIELGSGYG----LAGLVIAATT---E--ALEVVISDGNPQVVDYIQRNVD-ANSGA--------------FG---  186 (309)
Q Consensus       134 ~g~~VLELG~GtG----~~~l~la~~~---~--~~~V~~tD~~~~~l~~~~~n~~-~n~~~--------------~~---  186 (309)
                      +.-+|+-.||+||    .+++.+....   .  .-+++|||+|+.+|+.|++-+= .+.+.              .+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            3469999999999    3344444411   1  2489999999999999985321 01110              00   


Q ss_pred             ------CCceEEEEeeCCCCCCCCCCCCccEEEEcCCC--CCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          187 ------GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCT--FFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       187 ------~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~l--y~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                            +..|.+..++..+  .....+.||+|+|-+++  |+.+....+++.+.+.|+|||  .+++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~--~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG--~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLD--PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGG--YLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT---S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEE--EEEE-
T ss_pred             eEChHHcCceEEEecccCC--CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCC--EEEEe
Confidence                  2357777776655  22345789999998865  336677889999999999999  44443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.98  E-value=2.7e-05  Score=70.67  Aligned_cols=110  Identities=18%  Similarity=0.162  Sum_probs=72.2

Q ss_pred             CCeEEEeCCCCC----hhhHHHHHhcC----CcEEEEEcCCHHHHHHHHHHHHh----ccC-------------------
Q 021691          135 SKRVIELGSGYG----LAGLVIAATTE----ALEVVISDGNPQVVDYIQRNVDA----NSG-------------------  183 (309)
Q Consensus       135 g~~VLELG~GtG----~~~l~la~~~~----~~~V~~tD~~~~~l~~~~~n~~~----n~~-------------------  183 (309)
                      .-+|.-.||+||    .+++.+....+    .-+|+|||+|+.+|+.|++-+-.    .++                   
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            369999999999    33444444322    24799999999999999875310    000                   


Q ss_pred             -CC---CCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCC--CcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          184 -AF---GGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTF--FKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       184 -~~---~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                       .+   -+..|.+..++......+ ..+.||+|+|-+++.  ..+....+++.+.+.|+|||  .+++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG--~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDG--LLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCc--EEEEeC
Confidence             00   013455555555432221 246899999977653  35678999999999999999  444433

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.98  E-value=7.2e-05  Score=67.14  Aligned_cols=135  Identities=16%  Similarity=0.152  Sum_probs=84.6

Q ss_pred             cCCCCceeecccH--HHHHHHHhhCc-CcC--CCCeEEEeCCCCC----hhhHHHHHhcC-----CcEEEEEcCCHHHHH
Q 021691          107 IDNTGLVCHWPSE--DVLAFFSLSHA-DMF--RSKRVIELGSGYG----LAGLVIAATTE-----ALEVVISDGNPQVVD  172 (309)
Q Consensus       107 ~~~tG~~~~W~sa--~~La~~l~~~~-~~~--~g~~VLELG~GtG----~~~l~la~~~~-----~~~V~~tD~~~~~l~  172 (309)
                      ++-|++.  |+..  ..|.+.+.... ...  +.-+|.-.||+||    .+++.+....+     .-+|+|||+|..+|+
T Consensus        66 in~T~FF--R~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~  143 (268)
T COG1352          66 INVTEFF--RDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLE  143 (268)
T ss_pred             hccchhc--cCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHH
Confidence            4666653  5443  33566655311 101  3569999999999    44555556554     358999999999999


Q ss_pred             HHHHHHHh-----ccCCC----------C----------CCceEEEEeeCCCCCCCCCCCCccEEEEcCCC-C-CcccHH
Q 021691          173 YIQRNVDA-----NSGAF----------G----------GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCT-F-FKEFHK  225 (309)
Q Consensus       173 ~~~~n~~~-----n~~~~----------~----------~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~l-y-~~~~~~  225 (309)
                      .|+.-+=.     -++..          .          ...|.+..++...+..  ..+.||+|+|-+++ | +.+...
T Consensus       144 ~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~~q~  221 (268)
T COG1352         144 KARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEETQE  221 (268)
T ss_pred             HHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHHHHH
Confidence            99853211     11110          0          1235555554443332  45779999998854 4 456778


Q ss_pred             HHHHHHHHHHhcCCCeEEEEEe
Q 021691          226 DLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       226 ~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .++..++..|++||  .+++.+
T Consensus       222 ~il~~f~~~L~~gG--~LflG~  241 (268)
T COG1352         222 RILRRFADSLKPGG--LLFLGH  241 (268)
T ss_pred             HHHHHHHHHhCCCC--EEEEcc
Confidence            89999999999999  444433

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.96  E-value=0.00021  Score=64.68  Aligned_cols=126  Identities=17%  Similarity=0.177  Sum_probs=77.2

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--CCCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--PYIVD  207 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--~~~~~  207 (309)
                      ..+..++|||+|||+|....++...++ ..+++++|.|+.|++.++.-+... ....  .     ..|.....  .....
T Consensus        30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-~~~~--~-----~~~~~~~~~~~~~~~  101 (274)
T PF09243_consen   30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-PNNR--N-----AEWRRVLYRDFLPFP  101 (274)
T ss_pred             cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-cccc--c-----chhhhhhhcccccCC
Confidence            346778999999999987777666555 458999999999999888754432 2110  0     01111100  01112


Q ss_pred             CccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecCCchH---HHHHHHHHhCCCeE
Q 021691          208 TFDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKRGDSL---DKFLEEIEGNHLHF  268 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~---~~f~~~~~~~G~~~  268 (309)
                      ..|+|+++.++-....  ...+++.+...+++    .+++..+..+..+   .+..+.+.+.|+.+
T Consensus       102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~----~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v  163 (274)
T PF09243_consen  102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP----VLVLVEPGTPAGFRRIAEARDQLLEKGAHV  163 (274)
T ss_pred             CCcEEEEehhhhcCCchHHHHHHHHHHHhccC----cEEEEcCCChHHHHHHHHHHHHHhhCCCce
Confidence            3499999998876554  34444444444432    5777777665443   34556677777765

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.95  E-value=2.1e-05  Score=67.97  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh-------ccCCCCCCceEEEEeeCCCCC
Q 021691          129 HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA-------NSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       129 ~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~-------n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      ...+.++...+|||||.|-+-+.+|...+..+++|+++.+...+.++.+.+.       .+..  ..++.....|.-+.+
T Consensus        37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~--~~~v~l~~gdfl~~~  114 (205)
T PF08123_consen   37 ELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR--PGKVELIHGDFLDPD  114 (205)
T ss_dssp             HTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-----EEEEECS-TTTHH
T ss_pred             HhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc--cccceeeccCccccH
Confidence            3456678899999999999988888888888899999999888777654433       2221  234444443332211


Q ss_pred             CC-CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          202 FP-YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       202 ~~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .. ..-...|+|++++..|.++....+.+.+ .-||+|.
T Consensus       115 ~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~-~~lk~G~  152 (205)
T PF08123_consen  115 FVKDIWSDADVVFVNNTCFDPDLNLALAELL-LELKPGA  152 (205)
T ss_dssp             HHHHHGHC-SEEEE--TTT-HHHHHHHHHHH-TTS-TT-
T ss_pred             hHhhhhcCCCEEEEeccccCHHHHHHHHHHH-hcCCCCC
Confidence            00 0013579999999998876666553333 4455554

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PHA01634 hypothetical protein

Probab=97.92  E-value=5.7e-05  Score=59.29  Aligned_cols=75  Identities=17%  Similarity=0.180  Sum_probs=59.0

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .+.+++|+|+|++.|--++.++. .|+++|++.+.++...+..+.|++.|.+-.    --+..-.|..     .-++||+
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l-~GAK~Vva~E~~~kl~k~~een~k~nnI~D----K~v~~~eW~~-----~Y~~~Di   95 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLL-RGASFVVQYEKEEKLRKKWEEVCAYFNICD----KAVMKGEWNG-----EYEDVDI   95 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhh-cCccEEEEeccCHHHHHHHHHHhhhheeee----ceeecccccc-----cCCCcce
Confidence            36899999999999999999776 478999999999999999999999987631    1223336764     2367898


Q ss_pred             EEEcCC
Q 021691          212 IVASDC  217 (309)
Q Consensus       212 Ii~~d~  217 (309)
                      .+. ||
T Consensus        96 ~~i-DC  100 (156)
T PHA01634         96 FVM-DC  100 (156)
T ss_pred             EEE-Ec
Confidence            877 55

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.89  E-value=2.8e-05  Score=70.80  Aligned_cols=59  Identities=10%  Similarity=0.026  Sum_probs=47.1

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHh
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDA  180 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~  180 (309)
                      |.+-+.+.....+|..++|.+||.|..+..+++..+ ..+|+|+|.+++|++.+++++..
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~   66 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP   66 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence            333344433445788999999999999999998875 57999999999999999987643

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=97.87  E-value=9.3e-06  Score=72.36  Aligned_cols=130  Identities=18%  Similarity=0.072  Sum_probs=80.9

Q ss_pred             cccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC
Q 021691          105 CNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA  184 (309)
Q Consensus       105 ~~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~  184 (309)
                      .....||.. +|++++.|+.++.+++....+++|.++|||.+...+..++. + .-|...|....+.-....+...+...
T Consensus        62 ~~~~~tg~~-~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~-~-~~v~~~~~~~~~~~~l~~~~~~~~~~  138 (262)
T KOG2497|consen   62 FLLARTGLS-VWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARV-P-DCVVTLDSLRCAGLLLEEIILLSRDL  138 (262)
T ss_pred             HHHHHhccc-cchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhc-c-cceecCCccCcHHHHHHHHHhccccc
Confidence            345788886 99999999999999998899999999999999988554553 2 23333333333333333333222211


Q ss_pred             CCCCceEEEEeeCCCCCC-C-CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcC
Q 021691          185 FGGTTVKSMTLHWNQDDF-P-YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKV  238 (309)
Q Consensus       185 ~~~~~v~~~~l~w~~~~~-~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~  238 (309)
                      .....-+...++|..... + .....+|+|+++|+.|. .....++..+..+|..+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~  193 (262)
T KOG2497|consen  139 SLEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLRW  193 (262)
T ss_pred             cccccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHHhc
Confidence            111111222222221110 1 01233899999999999 77888888888877654

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.87  E-value=0.00017  Score=62.31  Aligned_cols=122  Identities=13%  Similarity=0.088  Sum_probs=75.5

Q ss_pred             EEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCC
Q 021691          138 VIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDC  217 (309)
Q Consensus       138 VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~  217 (309)
                      |.|+||--|.+++.|++...+.+|+++|+++.-++.+++++..+++.   .++.+...|.-.. . .+.+..|.|+.+.+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~---~~i~~rlgdGL~~-l-~~~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE---DRIEVRLGDGLEV-L-KPGEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T---TTEEEEE-SGGGG----GGG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc---ccEEEEECCcccc-c-CCCCCCCEEEEecC
Confidence            68999999999999999876778999999999999999999999874   4666655532211 1 11223688777643


Q ss_pred             CCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEE
Q 021691          218 TFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       218 ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                        ....+..++......++..   .-++..|..  ....+.+.+.++||....-
T Consensus        76 --GG~lI~~ILe~~~~~~~~~---~~lILqP~~--~~~~LR~~L~~~gf~I~~E  122 (205)
T PF04816_consen   76 --GGELIIEILEAGPEKLSSA---KRLILQPNT--HAYELRRWLYENGFEIIDE  122 (205)
T ss_dssp             ---HHHHHHHHHHTGGGGTT-----EEEEEESS---HHHHHHHHHHTTEEEEEE
T ss_pred             --CHHHHHHHHHhhHHHhccC---CeEEEeCCC--ChHHHHHHHHHCCCEEEEe
Confidence              1222333333333333221   245556654  3356778889999987543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.86  E-value=0.00011  Score=62.87  Aligned_cols=100  Identities=21%  Similarity=0.201  Sum_probs=77.8

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|.|||++|-|.|++.-.+-+. +..+=+.++.+|++++.++.+.-.     ...+|......|.+.....+++.||-|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDKHFDGI  173 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhc-CCcceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhccccccCccee
Confidence            46889999999999998876554 455667779999999998875322     245788888889877666667889999


Q ss_pred             EEcCCC-CCcccHHHHHHHHHHHHhcCC
Q 021691          213 VASDCT-FFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       213 i~~d~l-y~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +- |.+ -.-++...+.+.+.+||||+|
T Consensus       174 ~y-DTy~e~yEdl~~~hqh~~rLLkP~g  200 (271)
T KOG1709|consen  174 YY-DTYSELYEDLRHFHQHVVRLLKPEG  200 (271)
T ss_pred             Ee-echhhHHHHHHHHHHHHhhhcCCCc
Confidence            87 554 345677788889999999999

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.86  E-value=0.00031  Score=65.61  Aligned_cols=120  Identities=16%  Similarity=0.171  Sum_probs=84.2

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC--------------------------------Cc-------E
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE--------------------------------AL-------E  160 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~--------------------------------~~-------~  160 (309)
                      ..||.-+.....-.++..++|-=||+|.+.+..|....                                .+       .
T Consensus       177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~  256 (381)
T COG0116         177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI  256 (381)
T ss_pred             HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence            56777777777777778999999999999998766532                                01       3


Q ss_pred             EEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc---------ccHHHHHHHH
Q 021691          161 VVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK---------EFHKDLARII  231 (309)
Q Consensus       161 V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l  231 (309)
                      ++++|+++.+++.|+.|++..|+.   ..|.+.+.|...-..+.  ..+|+||++. .|..         ..+..+.+++
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~---d~I~f~~~d~~~l~~~~--~~~gvvI~NP-PYGeRlg~~~~v~~LY~~fg~~l  330 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVG---DLIEFKQADATDLKEPL--EEYGVVISNP-PYGERLGSEALVAKLYREFGRTL  330 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCC---ceEEEEEcchhhCCCCC--CcCCEEEeCC-CcchhcCChhhHHHHHHHHHHHH
Confidence            779999999999999999999984   56777766554333222  6899999954 4542         1344455566


Q ss_pred             HHHHhcCCCeEEEEEe
Q 021691          232 KFLLKKVGPSEALFFS  247 (309)
Q Consensus       232 ~~lLk~~G~~~~ii~~  247 (309)
                      ++.++.-+  ..++.+
T Consensus       331 k~~~~~ws--~~v~tt  344 (381)
T COG0116         331 KRLLAGWS--RYVFTT  344 (381)
T ss_pred             HHHhcCCc--eEEEEc
Confidence            66665444  444443

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.86  E-value=0.00088  Score=60.17  Aligned_cols=135  Identities=10%  Similarity=0.013  Sum_probs=88.9

Q ss_pred             CCCCceeecccHHHHHHHHhhCcC----cCCCCeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhc
Q 021691          108 DNTGLVCHWPSEDVLAFFSLSHAD----MFRSKRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDAN  181 (309)
Q Consensus       108 ~~tG~~~~W~sa~~La~~l~~~~~----~~~g~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n  181 (309)
                      +..||+=+-.--.+|-+.+.....    .-..-+|||+.||.|..-+-+....+.  .+|...|.++..++..++-++.+
T Consensus       105 naiGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~  184 (311)
T PF12147_consen  105 NAIGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER  184 (311)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc
Confidence            455554233333444444443221    124459999999999776655555554  68999999999999999999999


Q ss_pred             cCCCCCCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCc---ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          182 SGAFGGTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFK---EFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       182 ~~~~~~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ++.   ..+++...|.-+.. .......+++++.+..+-.-   ......++-+..++.|+|  .+|+..
T Consensus       185 gL~---~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG--~lIyTg  249 (311)
T PF12147_consen  185 GLE---DIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGG--YLIYTG  249 (311)
T ss_pred             CCc---cceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCc--EEEEcC
Confidence            984   33466666543321 22345678999998765433   335667888999999999  444433

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.85  E-value=0.00024  Score=65.40  Aligned_cols=132  Identities=17%  Similarity=0.191  Sum_probs=87.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh---ccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA---NSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~---n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      .-++||=||.|-|+....+.+.-+-.+++.+|.+|+|++.+++|...   |+-.+...++++..-|-.+.. ......||
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl-r~a~~~fD  367 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL-RTAADMFD  367 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH-Hhhccccc
Confidence            34799999999999999987754468999999999999999976543   555555667766544322111 11235899


Q ss_pred             EEEEcCCCC-Cccc-----HHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeEE
Q 021691          211 VIVASDCTF-FKEF-----HKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       211 vIi~~d~ly-~~~~-----~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~~  269 (309)
                      +||. |..- ....     -..+-..+++.|+++|  .+++.+..   .+..+......++++|+.+-
T Consensus       368 ~vIV-Dl~DP~tps~~rlYS~eFY~ll~~~l~e~G--l~VvQags~y~tp~vfw~i~aTik~AG~~~~  432 (508)
T COG4262         368 VVIV-DLPDPSTPSIGRLYSVEFYRLLSRHLAETG--LMVVQAGSPYFTPRVFWRIDATIKSAGYRVW  432 (508)
T ss_pred             EEEE-eCCCCCCcchhhhhhHHHHHHHHHhcCcCc--eEEEecCCCccCCceeeeehhHHHhCcceee
Confidence            9998 3221 1111     1334566778888889  55655533   24455556677889998764

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=0.0013  Score=61.74  Aligned_cols=133  Identities=17%  Similarity=0.138  Sum_probs=86.2

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYIVD  207 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~~~  207 (309)
                      +..+|.+|||+-++.|.=+..+|.....  ..|++.|.++.=+..++.|+..-|..    ++.+...|-.... ......
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~----nv~~~~~d~~~~~~~~~~~~  228 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR----NVIVVNKDARRLAELLPGGE  228 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC----ceEEEecccccccccccccC
Confidence            4567899999999998777777777653  56799999999999999999998873    3444443322111 111223


Q ss_pred             CccEEEEcCCCCC-----------------------cccHHHHHHHHHHHHhcCCCeEEEEEeecC--CchHHHHHHHHH
Q 021691          208 TFDVIVASDCTFF-----------------------KEFHKDLARIIKFLLKKVGPSEALFFSPKR--GDSLDKFLEEIE  262 (309)
Q Consensus       208 ~fDvIi~~d~ly~-----------------------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--~~~~~~f~~~~~  262 (309)
                      +||.|+. |+.-.                       ......++....++||+||  .++++++.-  .+..+.....++
T Consensus       229 ~fD~iLl-DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG--~LVYSTCS~~~eENE~vV~~~L~  305 (355)
T COG0144         229 KFDRILL-DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGG--VLVYSTCSLTPEENEEVVERFLE  305 (355)
T ss_pred             cCcEEEE-CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEccCCchhcCHHHHHHHHH
Confidence            6999998 42211                       0124568889999999999  666666543  223233334444


Q ss_pred             hC-CCeEEE
Q 021691          263 GN-HLHFSI  270 (309)
Q Consensus       263 ~~-G~~~~~  270 (309)
                      +. ++..+.
T Consensus       306 ~~~~~~~~~  314 (355)
T COG0144         306 RHPDFELEP  314 (355)
T ss_pred             hCCCceeec
Confidence            44 444443

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.81  E-value=4.8e-05  Score=64.34  Aligned_cols=53  Identities=21%  Similarity=0.086  Sum_probs=39.2

Q ss_pred             ccHHHHHHHHhhCcCcC--CCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHH
Q 021691          117 PSEDVLAFFSLSHADMF--RSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQ  169 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~--~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~  169 (309)
                      .|+..|.+......-+.  .+.+||||||++|..+..++... .+.+|+++|..+.
T Consensus         4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            45677777766654233  34899999999999999987764 3579999998765

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.77  E-value=0.00031  Score=63.12  Aligned_cols=116  Identities=13%  Similarity=0.182  Sum_probs=74.8

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ...+++.+.+.....++..|||+|+|+|.++..+++.  +.+|+++|.++.+.+.+++....      ..++.+...|.-
T Consensus        15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~~D~l   86 (262)
T PF00398_consen   15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFAS------NPNVEVINGDFL   86 (262)
T ss_dssp             HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTT------CSSEEEEES-TT
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhh------cccceeeecchh
Confidence            3556666666666668999999999999999999988  38999999999999999986552      245666666554


Q ss_pred             CCCCCC-CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          199 QDDFPY-IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       199 ~~~~~~-~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ..+... .......|+++- .|...  ..++..+...-+ -|...++++
T Consensus        87 ~~~~~~~~~~~~~~vv~Nl-Py~is--~~il~~ll~~~~-~g~~~~~l~  131 (262)
T PF00398_consen   87 KWDLYDLLKNQPLLVVGNL-PYNIS--SPILRKLLELYR-FGRVRMVLM  131 (262)
T ss_dssp             TSCGGGHCSSSEEEEEEEE-TGTGH--HHHHHHHHHHGG-GCEEEEEEE
T ss_pred             ccccHHhhcCCceEEEEEe-cccch--HHHHHHHhhccc-ccccceEEE
Confidence            333221 123456777764 45332  345554444333 343334443

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.72  E-value=0.0013  Score=56.93  Aligned_cols=149  Identities=13%  Similarity=0.129  Sum_probs=90.5

Q ss_pred             CceeecccHH-HHHHHHhhC---cCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691          111 GLVCHWPSED-VLAFFSLSH---ADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAF  185 (309)
Q Consensus       111 G~~~~W~sa~-~La~~l~~~---~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~  185 (309)
                      +++ +|..-. .||..+..-   ..+.+|.+||=||+.+|..--.++-..+ .+.|++++.++.....+-.-++..    
T Consensus        47 eYR-~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----  121 (229)
T PF01269_consen   47 EYR-VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----  121 (229)
T ss_dssp             EEE-EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----
T ss_pred             cee-ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----
Confidence            556 897643 466666543   3567899999999999977666777766 679999999997766654333321    


Q ss_pred             CCCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------CchHHH
Q 021691          186 GGTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------GDSLDK  256 (309)
Q Consensus       186 ~~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------~~~~~~  256 (309)
                        .++-...-|-..+. ....-+..|+|++ |+. .++..+-+......+||++|  .++++-..+        ...+..
T Consensus       122 --~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG--~~~i~iKa~siD~t~~p~~vf~~  195 (229)
T PF01269_consen  122 --PNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGG--HLIISIKARSIDSTADPEEVFAE  195 (229)
T ss_dssp             --TTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEE--EEEEEEEHHHH-SSSSHHHHHHH
T ss_pred             --CceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCc--EEEEEEecCcccCcCCHHHHHHH
Confidence              23333333222211 1123468999998 766 45667788899999999999  454443221        122334


Q ss_pred             HHHHHHhCCCeEEE
Q 021691          257 FLEEIEGNHLHFSI  270 (309)
Q Consensus       257 f~~~~~~~G~~~~~  270 (309)
                      -.+.+++.||+...
T Consensus       196 e~~~L~~~~~~~~e  209 (229)
T PF01269_consen  196 EVKKLKEEGFKPLE  209 (229)
T ss_dssp             HHHHHHCTTCEEEE
T ss_pred             HHHHHHHcCCChhe
Confidence            45567777888744

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.71  E-value=0.00015  Score=65.99  Aligned_cols=130  Identities=18%  Similarity=0.187  Sum_probs=89.3

Q ss_pred             CCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691          110 TGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGT  188 (309)
Q Consensus       110 tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~  188 (309)
                      .|++++++.+-.++-.++.   ..+|.+|||+.||.|.=+..+|...+ .+.|++.|.++.-+..++.|+...|..    
T Consensus        64 ~G~~~vQd~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~----  136 (283)
T PF01189_consen   64 NGLFYVQDESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF----  136 (283)
T ss_dssp             TTSEEEHHHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S----
T ss_pred             CCcEEeccccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc----
Confidence            4777788887777666553   34788999999999988888888766 579999999999999999999988773    


Q ss_pred             ceEEEEeeCCCCCCCCCCCCccEEEEcC-CCC-----Cc----------------ccHHHHHHHHHHHH----hcCCCeE
Q 021691          189 TVKSMTLHWNQDDFPYIVDTFDVIVASD-CTF-----FK----------------EFHKDLARIIKFLL----KKVGPSE  242 (309)
Q Consensus       189 ~v~~~~l~w~~~~~~~~~~~fDvIi~~d-~ly-----~~----------------~~~~~ll~~l~~lL----k~~G~~~  242 (309)
                      .+.+...|............||.|+.-. |.-     ..                .....+++...+++    ++||  .
T Consensus       137 ~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG--~  214 (283)
T PF01189_consen  137 NVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGG--R  214 (283)
T ss_dssp             SEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEE--E
T ss_pred             eEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCC--e
Confidence            4444432221111011223699999822 211     11                11345788888999    9999  6


Q ss_pred             EEEEee
Q 021691          243 ALFFSP  248 (309)
Q Consensus       243 ~ii~~~  248 (309)
                      ++++++
T Consensus       215 lvYsTC  220 (283)
T PF01189_consen  215 LVYSTC  220 (283)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            666664

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.71  E-value=0.0007  Score=58.34  Aligned_cols=134  Identities=19%  Similarity=0.131  Sum_probs=87.9

Q ss_pred             ccHHHHHHHHhhCcCcCC----CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE
Q 021691          117 PSEDVLAFFSLSHADMFR----SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS  192 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~----g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~  192 (309)
                      +++.+|.+|+........    ..++||+||=+....+.   ..+--.|+.+|.++.-                   -.+
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~~-------------------~~I   87 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQH-------------------PGI   87 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCccc---ccCceeeEEeecCCCC-------------------CCc
Confidence            567888999887543222    25999999975443322   2344579999986521                   122


Q ss_pred             EEeeCCCCCCC-CCCCCccEEEEcCCCCCc---ccHHHHHHHHHHHHhcCCC---eEEEEEee------cCCchHHHHHH
Q 021691          193 MTLHWNQDDFP-YIVDTFDVIVASDCTFFK---EFHKDLARIIKFLLKKVGP---SEALFFSP------KRGDSLDKFLE  259 (309)
Q Consensus       193 ~~l~w~~~~~~-~~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~lLk~~G~---~~~ii~~~------~r~~~~~~f~~  259 (309)
                      .+-|+-+-..+ ...+.||+|.++-++-+.   .....+++...++|+++|.   ..+++..|      .|--+.+.|.+
T Consensus        88 ~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~  167 (219)
T PF11968_consen   88 LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLRE  167 (219)
T ss_pred             eeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHH
Confidence            23333333332 235789999999888664   4577899999999999994   11444443      24456678999


Q ss_pred             HHHhCCCeEEEEe
Q 021691          260 EIEGNHLHFSIIE  272 (309)
Q Consensus       260 ~~~~~G~~~~~~~  272 (309)
                      .+...||.....+
T Consensus       168 im~~LGf~~~~~~  180 (219)
T PF11968_consen  168 IMESLGFTRVKYK  180 (219)
T ss_pred             HHHhCCcEEEEEE
Confidence            9999999875543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.68  E-value=0.0022  Score=59.27  Aligned_cols=116  Identities=17%  Similarity=0.213  Sum_probs=68.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      +.+|+++|||||++|..+..+++.  +.+|+++|..+ |    ..++..+      .+|.....+--... + ....+|+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l----~~~L~~~------~~V~h~~~d~fr~~-p-~~~~vDw  273 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-M----AQSLMDT------GQVEHLRADGFKFR-P-PRKNVDW  273 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-c----CHhhhCC------CCEEEEeccCcccC-C-CCCCCCE
Confidence            468999999999999999998886  45999999543 2    2222222      23443333221111 1 1468999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-----cCCchHHHHH----HHHHhCCCe
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-----KRGDSLDKFL----EEIEGNHLH  267 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-----~r~~~~~~f~----~~~~~~G~~  267 (309)
                      ++| |+.-.+   ..+.+.+.+.|..+- ..-.++.-     .|.++...++    +.+.++|..
T Consensus       274 vVc-Dmve~P---~rva~lm~~Wl~~g~-cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~  333 (357)
T PRK11760        274 LVC-DMVEKP---ARVAELMAQWLVNGW-CREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGIN  333 (357)
T ss_pred             EEE-ecccCH---HHHHHHHHHHHhcCc-ccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence            999 776444   456677777776552 23333332     2333334443    445566764

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.00037  Score=60.73  Aligned_cols=111  Identities=19%  Similarity=0.079  Sum_probs=74.0

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHH-HHHHHHHhccCCCCCCceEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVD-YIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~-~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      +=.++..|...+....-.++|+.|||+|+-||.++..+.. .|+.+|+++|..-.-+. .+|.          ..+|.+.
T Consensus        60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq-~gAk~VyavDVG~~Ql~~kLR~----------d~rV~~~  128 (245)
T COG1189          60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQ-RGAKHVYAVDVGYGQLHWKLRN----------DPRVIVL  128 (245)
T ss_pred             cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHH-cCCcEEEEEEccCCccCHhHhc----------CCcEEEE
Confidence            5667888998888887778999999999999999987555 68999999997542221 1111          1222222


Q ss_pred             -EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          194 -TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       194 -~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                       ..+...-......+..|++++ |+-|.  ....++..+..++++++
T Consensus       129 E~tN~r~l~~~~~~~~~d~~v~-DvSFI--SL~~iLp~l~~l~~~~~  172 (245)
T COG1189         129 ERTNVRYLTPEDFTEKPDLIVI-DVSFI--SLKLILPALLLLLKDGG  172 (245)
T ss_pred             ecCChhhCCHHHcccCCCeEEE-Eeehh--hHHHHHHHHHHhcCCCc
Confidence             111111111122347899998 65544  35678888999999988

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.0014  Score=56.25  Aligned_cols=130  Identities=16%  Similarity=0.059  Sum_probs=85.3

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      =-|+..|.+....+.-+.+|.+|+||||-.|..+..+++..+. .+|+++|+.|--           .    ...|...+
T Consensus        27 SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~----~~~V~~iq   91 (205)
T COG0293          27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P----IPGVIFLQ   91 (205)
T ss_pred             chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c----CCCceEEe
Confidence            4567777777776644456799999999999999998888765 359999987621           1    12366666


Q ss_pred             eeCCCCCCC------CCCCCccEEEEcCCCCCc------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHH
Q 021691          195 LHWNQDDFP------YIVDTFDVIVASDCTFFK------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDK  256 (309)
Q Consensus       195 l~w~~~~~~------~~~~~fDvIi~~d~ly~~------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~  256 (309)
                      .|...++..      ....++|+|++ |..-..            ..-..++.....+|+++|   .++.-..++...+.
T Consensus        92 ~d~~~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G---~fv~K~fqg~~~~~  167 (205)
T COG0293          92 GDITDEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGG---SFVAKVFQGEDFED  167 (205)
T ss_pred             eeccCccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCC---eEEEEEEeCCCHHH
Confidence            666655432      12345799997 433211            122345566677899999   33444445566677


Q ss_pred             HHHHHHhC
Q 021691          257 FLEEIEGN  264 (309)
Q Consensus       257 f~~~~~~~  264 (309)
                      ++..+++.
T Consensus       168 ~l~~~~~~  175 (205)
T COG0293         168 LLKALRRL  175 (205)
T ss_pred             HHHHHHHh
Confidence            88888765

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.63  E-value=0.00016  Score=58.75  Aligned_cols=50  Identities=28%  Similarity=0.345  Sum_probs=43.1

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHh----cCCcEEEEEcCCHHHHHHHHHHHHhcc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAAT----TEALEVVISDGNPQVVDYIQRNVDANS  182 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~----~~~~~V~~tD~~~~~l~~~~~n~~~n~  182 (309)
                      .+..+|+|+|||-|.++..++..    ....+|+++|.++..++.+++..+..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            56789999999999999999882    156799999999999999988887765

>PRK10742 putative methyltransferase; Provisional

Probab=97.57  E-value=0.00034  Score=61.75  Aligned_cols=108  Identities=15%  Similarity=0.157  Sum_probs=68.7

Q ss_pred             HHHHHHHhhCcCcCCCC--eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC--CC---CCceEE
Q 021691          120 DVLAFFSLSHADMFRSK--RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA--FG---GTTVKS  192 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~--~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~--~~---~~~v~~  192 (309)
                      +.|++-+    .+.+|.  +|||+-+|+|..++.+|.. | .+|+++|.++.+...++.+++.....  ..   ..++++
T Consensus        76 ~~l~kAv----glk~g~~p~VLD~TAGlG~Da~~las~-G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l  149 (250)
T PRK10742         76 EAVAKAV----GIKGDYLPDVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL  149 (250)
T ss_pred             cHHHHHh----CCCCCCCCEEEECCCCccHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence            4455443    344566  8999999999999998876 4 46999999999999999999873211  00   023333


Q ss_pred             EEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHH
Q 021691          193 MTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLL  235 (309)
Q Consensus       193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lL  235 (309)
                      ...+-.... .....+||+|+. |+.|-.....++.+.=-+++
T Consensus       150 ~~~da~~~L-~~~~~~fDVVYl-DPMfp~~~ksa~vkk~mr~~  190 (250)
T PRK10742        150 IHASSLTAL-TDITPRPQVVYL-DPMFPHKQKSALVKKEMRVF  190 (250)
T ss_pred             EeCcHHHHH-hhCCCCCcEEEE-CCCCCCCccccchhhhHHHH
Confidence            332211111 112347999998 88888666555443333333

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.56  E-value=0.0022  Score=50.54  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=63.4

Q ss_pred             EEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC-CCccEEEEc
Q 021691          138 VIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV-DTFDVIVAS  215 (309)
Q Consensus       138 VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~-~~fDvIi~~  215 (309)
                      ++|+|||+|... .++...+. ..++++|.++.++...+..... ...   ..+.....+......+... ..||++ ..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~-~~  125 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL---GLVDFVVADALGGVLPFEDSASFDLV-IS  125 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC---CceEEEEeccccCCCCCCCCCceeEE-ee
Confidence            999999999876 43444322 3899999999999985444332 210   1134444444332123333 479999 54


Q ss_pred             CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          216 DCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       216 d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ...++.......+..+.+.++++|  .+++..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~  155 (257)
T COG0500         126 LLVLHLLPPAKALRELLRVLKPGG--RLVLSD  155 (257)
T ss_pred             eeehhcCCHHHHHHHHHHhcCCCc--EEEEEe
Confidence            444333337889999999999988  444443

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.48  E-value=0.0019  Score=56.96  Aligned_cols=126  Identities=15%  Similarity=0.154  Sum_probs=82.7

Q ss_pred             ecccHHH--HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE
Q 021691          115 HWPSEDV--LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS  192 (309)
Q Consensus       115 ~W~sa~~--La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~  192 (309)
                      -||-.-+  +.+++...+   ....|-|+|||-+-++.   .  ...+|...|..+           .|      .+|.+
T Consensus       162 kWP~nPld~ii~~ik~r~---~~~vIaD~GCGEakiA~---~--~~~kV~SfDL~a-----------~~------~~V~~  216 (325)
T KOG3045|consen  162 KWPENPLDVIIRKIKRRP---KNIVIADFGCGEAKIAS---S--ERHKVHSFDLVA-----------VN------ERVIA  216 (325)
T ss_pred             hCCCChHHHHHHHHHhCc---CceEEEecccchhhhhh---c--cccceeeeeeec-----------CC------Cceee
Confidence            3665332  455554442   45678899999886543   1  134788888532           11      12222


Q ss_pred             EEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-cCCchHHHHHHHHHhCCCeEEEE
Q 021691          193 MTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-KRGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-~r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      .  |.  ...+..+++.|+++..-.+. ..++..++.++.++|++||  .+.+... .|-.....|.+.+...||.+...
T Consensus       217 c--Dm--~~vPl~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG--~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~  289 (325)
T KOG3045|consen  217 C--DM--RNVPLEDESVDVAVFCLSLM-GTNLADFIKEANRILKPGG--LLYIAEVKSRFSDVKGFVRALTKLGFDVKHK  289 (325)
T ss_pred             c--cc--cCCcCccCcccEEEeeHhhh-cccHHHHHHHHHHHhccCc--eEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence            2  21  33566678999998865544 3467889999999999999  5555443 45566778999999999998765


Q ss_pred             e
Q 021691          272 E  272 (309)
Q Consensus       272 ~  272 (309)
                      .
T Consensus       290 d  290 (325)
T KOG3045|consen  290 D  290 (325)
T ss_pred             h
Confidence            4

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.43  E-value=0.0044  Score=53.49  Aligned_cols=124  Identities=19%  Similarity=0.174  Sum_probs=82.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.++.|+||--|.+..++.+..++..+++.|+++..++.+.+|+..+++.   .++++...|.-.  .-..+..+|+|+
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~---~~i~vr~~dgl~--~l~~~d~~d~iv   90 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS---ERIDVRLGDGLA--VLELEDEIDVIV   90 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc---ceEEEeccCCcc--ccCccCCcCEEE
Confidence            355699999999999999999888899999999999999999999999884   566666664421  112345789988


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~  269 (309)
                      .+.+  ....+..+++.-..-|+.-.  . ++..|..  ....+.+.+.+++|...
T Consensus        91 IAGM--GG~lI~~ILee~~~~l~~~~--r-lILQPn~--~~~~LR~~L~~~~~~I~  139 (226)
T COG2384          91 IAGM--GGTLIREILEEGKEKLKGVE--R-LILQPNI--HTYELREWLSANSYEIK  139 (226)
T ss_pred             EeCC--cHHHHHHHHHHhhhhhcCcc--e-EEECCCC--CHHHHHHHHHhCCceee
Confidence            7654  12234444444444443221  3 3444433  12345555666666654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.35  E-value=0.00014  Score=69.72  Aligned_cols=101  Identities=16%  Similarity=0.184  Sum_probs=62.3

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh-ccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA-NSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      +.+||+|||+|.+|-.+..+    .|+.+-..+.-...++..+.+ .|+       .+...-.+....+.+.+.||+|=|
T Consensus       119 R~~LDvGcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfaleRGv-------pa~~~~~~s~rLPfp~~~fDmvHc  187 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFALERGV-------PAMIGVLGSQRLPFPSNAFDMVHC  187 (506)
T ss_pred             EEEEeccceeehhHHHHhhC----CceEEEcccccCCchhhhhhhhcCc-------chhhhhhccccccCCccchhhhhc
Confidence            47899999999999887664    344443333211112211111 232       111111223456778899999999


Q ss_pred             cCCCCCccc-HHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          215 SDCTFFKEF-HKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       215 ~d~ly~~~~-~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      +.|+-.... -.-++-.+.|+|+|||  .+++.++.
T Consensus       188 src~i~W~~~~g~~l~evdRvLRpGG--yfv~S~pp  221 (506)
T PF03141_consen  188 SRCLIPWHPNDGFLLFEVDRVLRPGG--YFVLSGPP  221 (506)
T ss_pred             ccccccchhcccceeehhhhhhccCc--eEEecCCc
Confidence            998765322 2457789999999999  77777654

; GO: 0008168 methyltransferase activity

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.27  E-value=0.0058  Score=55.32  Aligned_cols=123  Identities=17%  Similarity=0.107  Sum_probs=78.0

Q ss_pred             eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691          137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD  216 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d  216 (309)
                      +|+||.||.|.+++.+.. .|...|.++|.++.+++..++|....-.   ...  +..++..     .....+|+|+++.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~-~G~~~v~a~e~~~~a~~~~~~N~~~~~~---~~D--i~~~~~~-----~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEK-AGFEIVAANEIDKSAAETYEANFPNKLI---EGD--ITKIDEK-----DFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHH-cCCEEEEEEeCCHHHHHHHHHhCCCCCc---cCc--cccCchh-----hcCCCCCEEEeCC
Confidence            699999999999887655 4666789999999999999888642211   111  1111111     1134699999977


Q ss_pred             CCCC----------cccHHHHHHHHHHHHhcCCCeEEEEEeec------CCchHHHHHHHHHhCCCeEEE
Q 021691          217 CTFF----------KEFHKDLARIIKFLLKKVGPSEALFFSPK------RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       217 ~ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~------r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      +.-.          .+....|+..+.++++.-.+..+++-...      ....+..+.+.+++.|+.+..
T Consensus        71 PCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~  140 (275)
T cd00315          71 PCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW  140 (275)
T ss_pred             CChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE
Confidence            5532          12344467677777765544333332221      134577888899999988754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.13  E-value=0.00099  Score=62.68  Aligned_cols=97  Identities=16%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC-CCCccEEEEc
Q 021691          137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI-VDTFDVIVAS  215 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~-~~~fDvIi~~  215 (309)
                      -|||+|+|||++++.++. .++..|++.+.=..|.+.+++-...|+..   .++.+..-.=.  +.... ....|+++..
T Consensus        69 ~vLdigtGTGLLSmMAvr-agaD~vtA~EvfkPM~d~arkI~~kng~S---dkI~vInkrSt--ev~vg~~~RadI~v~e  142 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVR-AGADSVTACEVFKPMVDLARKIMHKNGMS---DKINVINKRST--EVKVGGSSRADIAVRE  142 (636)
T ss_pred             EEEEccCCccHHHHHHHH-hcCCeEEeehhhchHHHHHHHHHhcCCCc---cceeeeccccc--eeeecCcchhhhhhHh
Confidence            689999999999998555 57889999999999999999999999985   34544332111  11111 1235666654


Q ss_pred             CCCC---CcccHHHHHHHHHHHHhcCC
Q 021691          216 DCTF---FKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       216 d~ly---~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +..-   ....++.+-....+|++++.
T Consensus       143 ~fdtEligeGalps~qhAh~~L~~~nc  169 (636)
T KOG1501|consen  143 DFDTELIGEGALPSLQHAHDMLLVDNC  169 (636)
T ss_pred             hhhhhhhccccchhHHHHHHHhcccCC
Confidence            3211   12345556666667777765

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.13  E-value=6.1e-05  Score=57.83  Aligned_cols=101  Identities=16%  Similarity=0.033  Sum_probs=36.9

Q ss_pred             EEeCCCCChhhHHHHHhcCC---cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          139 IELGSGYGLAGLVIAATTEA---LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       139 LELG~GtG~~~l~la~~~~~---~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      ||+|+..|..++.+++.+..   .+++++|..+. .+..++.++..+..   .++++...+-.+........+||+|+. 
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~---~~~~~~~g~s~~~l~~~~~~~~dli~i-   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS---DRVEFIQGDSPDFLPSLPDGPIDLIFI-   75 (106)
T ss_dssp             --------------------------EEEESS-------------GGG----BTEEEEES-THHHHHHHHH--EEEEEE-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC---CeEEEEEcCcHHHHHHcCCCCEEEEEE-
Confidence            69999999888877765443   37999999885 33444444444432   234444432211100111368999998 


Q ss_pred             CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          216 DCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       216 d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |.-|..+....-+..+...|+++|   +++++
T Consensus        76 Dg~H~~~~~~~dl~~~~~~l~~gg---viv~d  104 (106)
T PF13578_consen   76 DGDHSYEAVLRDLENALPRLAPGG---VIVFD  104 (106)
T ss_dssp             ES---HHHHHHHHHHHGGGEEEEE---EEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCe---EEEEe
Confidence            776666677777888888899988   55543

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.09  E-value=0.026  Score=50.78  Aligned_cols=134  Identities=22%  Similarity=0.108  Sum_probs=83.1

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-CC--------------------CceEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-GG--------------------TTVKS  192 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-~~--------------------~~v~~  192 (309)
                      ...+||==|||.|.++..+|+.  +..|.+.|.|--|+=..+  .-.|+... ..                    ..+.+
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~--fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i  131 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASN--FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI  131 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHH--HHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence            4569999999999999999987  679999999988854443  33333110 00                    00111


Q ss_pred             E--------------EeeCCCCC--CCC--CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec----C
Q 021691          193 M--------------TLHWNQDD--FPY--IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK----R  250 (309)
Q Consensus       193 ~--------------~l~w~~~~--~~~--~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~----r  250 (309)
                      -              .+.+++-.  ...  ..++||+|+.+--+--...+-..++++.++|||||  .-|=+.|.    .
T Consensus       132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG--~WIN~GPLlyh~~  209 (270)
T PF07942_consen  132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG--YWINFGPLLYHFE  209 (270)
T ss_pred             CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC--EEEecCCccccCC
Confidence            0              00001000  001  13689999886222224557788899999999999  33323321    1


Q ss_pred             ----------CchHHHHHHHHHhCCCeEEEEec
Q 021691          251 ----------GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       251 ----------~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                                .-+.+++...+++.||++...+.
T Consensus       210 ~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  210 PMSIPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                      22567899999999999876543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.05  E-value=0.048  Score=46.61  Aligned_cols=148  Identities=16%  Similarity=0.183  Sum_probs=93.4

Q ss_pred             ceeecccHH-HHHHHHhhC---cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh-ccCCCC
Q 021691          112 LVCHWPSED-VLAFFSLSH---ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA-NSGAFG  186 (309)
Q Consensus       112 ~~~~W~sa~-~La~~l~~~---~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~-n~~~~~  186 (309)
                      ++ .|+.-. .||.-++.-   ..+.+|.+||=||+-+|..--.++-..+.+.+++++.++.+...+-.-++. +++   
T Consensus        51 YR-~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni---  126 (231)
T COG1889          51 YR-EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNI---  126 (231)
T ss_pred             ee-eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCc---
Confidence            45 898743 365555542   346689999999999998877778888878899999999887765544433 222   


Q ss_pred             CCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------CchHHHH
Q 021691          187 GTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------GDSLDKF  257 (309)
Q Consensus       187 ~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------~~~~~~f  257 (309)
                          -...-|-..+. ....-+..|+|+. |+.. +...+-+.......|+++|  .+++.-.-|        ...+++-
T Consensus       127 ----~PIL~DA~~P~~Y~~~Ve~VDviy~-DVAQ-p~Qa~I~~~Na~~FLk~~G--~~~i~iKArSIdvT~dp~~vf~~e  198 (231)
T COG1889         127 ----IPILEDARKPEKYRHLVEKVDVIYQ-DVAQ-PNQAEILADNAEFFLKKGG--YVVIAIKARSIDVTADPEEVFKDE  198 (231)
T ss_pred             ----eeeecccCCcHHhhhhcccccEEEE-ecCC-chHHHHHHHHHHHhcccCC--eEEEEEEeecccccCCHHHHHHHH
Confidence                11111111111 1122356888887 5543 4556778899999999999  444433222        1233444


Q ss_pred             HHHHHhCCCeEEEE
Q 021691          258 LEEIEGNHLHFSII  271 (309)
Q Consensus       258 ~~~~~~~G~~~~~~  271 (309)
                      .+.+++.||.+...
T Consensus       199 v~kL~~~~f~i~e~  212 (231)
T COG1889         199 VEKLEEGGFEILEV  212 (231)
T ss_pred             HHHHHhcCceeeEE
Confidence            56677888876443

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.01  E-value=0.0024  Score=58.41  Aligned_cols=105  Identities=21%  Similarity=0.186  Sum_probs=68.9

Q ss_pred             ccccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHH-------HHHH
Q 021691          104 RCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVD-------YIQR  176 (309)
Q Consensus       104 ~~~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~-------~~~~  176 (309)
                      |.=+|+|-.    +|++  +-.+.+.....+|+-|.|=-.|||.+-+.+|. + ++.|+|+|++-.++.       .++.
T Consensus       184 R~yiGnTSm----DAeL--Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~-F-Ga~viGtDIDyr~vragrg~~~si~a  255 (421)
T KOG2671|consen  184 RCYIGNTSM----DAEL--SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAH-F-GAYVIGTDIDYRTVRAGRGEDESIKA  255 (421)
T ss_pred             ccccCCccc----chhH--HHHHhhhhccCCCCEEecCccccCceeeehhh-h-cceeeccccchheeecccCCCcchhH
Confidence            444688854    4443  33444555667899999999999988777555 4 569999999998887       4556


Q ss_pred             HHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC
Q 021691          177 NVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF  220 (309)
Q Consensus       177 n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~  220 (309)
                      |.+.-+...  .-+.+...|........ ...||.|+| |+.|.
T Consensus       256 NFkQYg~~~--~fldvl~~D~sn~~~rs-n~~fDaIvc-DPPYG  295 (421)
T KOG2671|consen  256 NFKQYGSSS--QFLDVLTADFSNPPLRS-NLKFDAIVC-DPPYG  295 (421)
T ss_pred             hHHHhCCcc--hhhheeeecccCcchhh-cceeeEEEe-CCCcc
Confidence            666655421  12334444443332222 467999999 88876

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.96  E-value=0.009  Score=53.87  Aligned_cols=99  Identities=18%  Similarity=0.156  Sum_probs=59.6

Q ss_pred             CeEEEeCCCC-ChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHH-hccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          136 KRVIELGSGY-GLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVD-ANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       136 ~~VLELG~Gt-G~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~-~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ++|+=||||. -+.++.+++..+ +..|+++|+++++++.+++-+. ..++   ..++.+...|.....  .....||+|
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L---~~~m~f~~~d~~~~~--~dl~~~DvV  196 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL---SKRMSFITADVLDVT--YDLKEYDVV  196 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH----SSEEEEES-GGGG---GG----SEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc---cCCeEEEecchhccc--cccccCCEE
Confidence            5999999996 788888887643 5689999999999999998877 3444   245666655443221  123579999


Q ss_pred             EEcCCCC-CcccHHHHHHHHHHHHhcCC
Q 021691          213 VASDCTF-FKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       213 i~~d~ly-~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +.+..+. ..+....++..+.+.+++|.
T Consensus       197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga  224 (276)
T PF03059_consen  197 FLAALVGMDAEPKEEILEHLAKHMAPGA  224 (276)
T ss_dssp             EE-TT-S----SHHHHHHHHHHHS-TTS
T ss_pred             EEhhhcccccchHHHHHHHHHhhCCCCc
Confidence            8877665 35577899999999999988

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.89  E-value=0.025  Score=52.28  Aligned_cols=110  Identities=9%  Similarity=-0.038  Sum_probs=66.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--C--CCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--F--PYI  205 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~--~~~  205 (309)
                      ++..++|||||.|.=...+...+    ....++++|+|.++|+.+..++......  ...+.....+.....  .  +..
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p--~l~v~~l~gdy~~~l~~l~~~~~  153 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS--HVRCAGLLGTYDDGLAWLKRPEN  153 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC--CeEEEEEEecHHHHHhhcccccc
Confidence            56689999999986433333322    2357999999999999999988733221  122333333333221  1  111


Q ss_pred             CCCccEEEEcC-CCCC--cccHHHHHHHHHH-HHhcCCCeEEEEEe
Q 021691          206 VDTFDVIVASD-CTFF--KEFHKDLARIIKF-LLKKVGPSEALFFS  247 (309)
Q Consensus       206 ~~~fDvIi~~d-~ly~--~~~~~~ll~~l~~-lLk~~G~~~~ii~~  247 (309)
                      .....+++.-. .+.+  +.....+++.+++ .|++++  .+++..
T Consensus       154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d--~lLiG~  197 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSD--SFLIGL  197 (319)
T ss_pred             cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCC--EEEEec
Confidence            23456665533 4433  4556678889988 999988  555543

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG2730 consensus Methylase [General function prediction only]

Probab=96.88  E-value=0.00091  Score=57.56  Aligned_cols=108  Identities=11%  Similarity=0.025  Sum_probs=75.1

Q ss_pred             CCCCceeecccHHHHHHHHhhCcC-cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691          108 DNTGLVCHWPSEDVLAFFSLSHAD-MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG  186 (309)
Q Consensus       108 ~~tG~~~~W~sa~~La~~l~~~~~-~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~  186 (309)
                      +--|+.  |-+-+..+..+..... ......|+|.-||.|...+..|..  +..|+++|++|.-+..+++|++.-|+.  
T Consensus        69 d~e~wf--svTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~--  142 (263)
T KOG2730|consen   69 DREGWF--SVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVP--  142 (263)
T ss_pred             cccceE--EeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCC--
Confidence            455664  4444444444443221 124568999999998888888887  558999999999999999999999985  


Q ss_pred             CCceEEEEeeCCCCCCC--CCCCCccEEEEcCCCCCcc
Q 021691          187 GTTVKSMTLHWNQDDFP--YIVDTFDVIVASDCTFFKE  222 (309)
Q Consensus       187 ~~~v~~~~l~w~~~~~~--~~~~~fDvIi~~d~ly~~~  222 (309)
                       .+|.+.+.||-+.-..  .....+|+|+.+.+.-.++
T Consensus       143 -~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~  179 (263)
T KOG2730|consen  143 -DRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPS  179 (263)
T ss_pred             -ceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcc
Confidence             4889988888643211  1223477888877655443

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.86  E-value=0.007  Score=53.95  Aligned_cols=133  Identities=17%  Similarity=0.183  Sum_probs=90.3

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      .....||.|+=+| ---+.|+++|...-+.+|..+|+++..+..+.+-++.-+.    .++.+..+|..++.......+|
T Consensus       148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~----~~ie~~~~Dlr~plpe~~~~kF  222 (354)
T COG1568         148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY----NNIEAFVFDLRNPLPEDLKRKF  222 (354)
T ss_pred             ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc----cchhheeehhcccChHHHHhhC
Confidence            3456799999999 6678888888776688999999999999999998888777    3566777766655444456899


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHH----HHHhCCCeEE
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLE----EIEGNHLHFS  269 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~----~~~~~G~~~~  269 (309)
                      |+.+- |+.+-...+..++..=-..|+..|. .-++.-+.+..+.+++.+    +..+.|+-..
T Consensus       223 DvfiT-DPpeTi~alk~FlgRGI~tLkg~~~-aGyfgiT~ressidkW~eiQr~lIn~~gvVIT  284 (354)
T COG1568         223 DVFIT-DPPETIKALKLFLGRGIATLKGEGC-AGYFGITRRESSIDKWREIQRILINEMGVVIT  284 (354)
T ss_pred             Ceeec-CchhhHHHHHHHHhccHHHhcCCCc-cceEeeeeccccHHHHHHHHHHHHHhcCeeeH
Confidence            99877 7766655555555444444544331 123333455556665544    3445666543

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.71  E-value=0.0047  Score=57.95  Aligned_cols=103  Identities=18%  Similarity=0.121  Sum_probs=76.2

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..+++..++|+|||.|.+..+++. .....+++.|.++.-+...........+.. ...+   ..-|- ...+..+..||
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~-k~~~---~~~~~-~~~~fedn~fd  180 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDN-KCNF---VVADF-GKMPFEDNTFD  180 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhh-hcce---ehhhh-hcCCCCccccC
Confidence            345677899999999999998766 456799999999877666655444433321 1122   22121 12345578999


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .+-+.+..-+.++...+++++.+.++|||
T Consensus       181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG  209 (364)
T KOG1269|consen  181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGG  209 (364)
T ss_pred             cEEEEeecccCCcHHHHHHHHhcccCCCc
Confidence            99999999999999999999999999999

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.65  E-value=0.0055  Score=57.92  Aligned_cols=105  Identities=20%  Similarity=0.125  Sum_probs=70.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHh-cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAAT-TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~-~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+.+|||.=||+|+=|+..++. .+..+|++-|+|+++++.+++|++.|++..+  .+.+...|-.... ......||+|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~--~~~v~~~DAn~ll-~~~~~~fD~I  125 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDE--RIEVSNMDANVLL-YSRQERFDVI  125 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGC--CEEEEES-HHHHH-CHSTT-EEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCc--eEEEehhhHHHHh-hhccccCCEE
Confidence            3459999999999999999988 4557999999999999999999999998531  3544443222111 1235789999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      =. |++-.   ...+++...+.++.||  .+.+.+
T Consensus       126 Dl-DPfGS---p~pfldsA~~~v~~gG--ll~vTa  154 (377)
T PF02005_consen  126 DL-DPFGS---PAPFLDSALQAVKDGG--LLCVTA  154 (377)
T ss_dssp             EE---SS-----HHHHHHHHHHEEEEE--EEEEEE
T ss_pred             Ee-CCCCC---ccHhHHHHHHHhhcCC--EEEEec
Confidence            66 66543   4577888888898888  444443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.61  E-value=0.005  Score=56.14  Aligned_cols=101  Identities=19%  Similarity=0.144  Sum_probs=67.9

Q ss_pred             HhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC---
Q 021691          126 SLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD---  201 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~---  201 (309)
                      .........|.+||=+|||. |++++..|+..|+.+|+.+|.++.-++.+++ +-......      ..... ....   
T Consensus       161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~------~~~~~-~~~~~~~  232 (354)
T KOG0024|consen  161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDP------SSHKS-SPQELAE  232 (354)
T ss_pred             hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEee------ccccc-cHHHHHH
Confidence            44455677899999999995 9999999999999999999999999999987 32221110      00000 0000   


Q ss_pred             -C--CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCC
Q 021691          202 -F--PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGP  240 (309)
Q Consensus       202 -~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~  240 (309)
                       .  ......||+.+-      -.-.+.-+++.-..++.+|.
T Consensus       233 ~v~~~~g~~~~d~~~d------CsG~~~~~~aai~a~r~gGt  268 (354)
T KOG0024|consen  233 LVEKALGKKQPDVTFD------CSGAEVTIRAAIKATRSGGT  268 (354)
T ss_pred             HHHhhccccCCCeEEE------ccCchHHHHHHHHHhccCCE
Confidence             0  011234677665      34456677888888999993

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.56  E-value=0.014  Score=54.21  Aligned_cols=96  Identities=27%  Similarity=0.313  Sum_probs=68.6

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      .++|+|-=||||+=|+..|...+..+|++-|+||++++.++.|+..|...    +..+..-|-. .........||+|=.
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~----~~~v~n~DAN-~lm~~~~~~fd~IDi  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE----DAEVINKDAN-ALLHELHRAFDVIDI  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc----cceeecchHH-HHHHhcCCCccEEec
Confidence            68999999999999999999887779999999999999999999999331    1111111110 001122368999844


Q ss_pred             cCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          215 SDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       215 ~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                       |++-.   +.++++...+..+.+|
T Consensus       128 -DPFGS---PaPFlDaA~~s~~~~G  148 (380)
T COG1867         128 -DPFGS---PAPFLDAALRSVRRGG  148 (380)
T ss_pred             -CCCCC---CchHHHHHHHHhhcCC
Confidence             66543   3466777777777788

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.51  E-value=0.0024  Score=57.47  Aligned_cols=120  Identities=18%  Similarity=0.107  Sum_probs=78.0

Q ss_pred             CceeecccHHHHHHHHhh--C----cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC
Q 021691          111 GLVCHWPSEDVLAFFSLS--H----ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA  184 (309)
Q Consensus       111 G~~~~W~sa~~La~~l~~--~----~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~  184 (309)
                      |..++|++...+-.+--.  .    .-...|..|.||.+|.|.+++...-.++++.|.+.|.||.+++.+++|++.|+..
T Consensus       165 GI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~  244 (351)
T KOG1227|consen  165 GITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM  244 (351)
T ss_pred             CeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH
Confidence            766799998877443111  0    0112467899999999999984444568999999999999999999999999763


Q ss_pred             CCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCC
Q 021691          185 FGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGP  240 (309)
Q Consensus       185 ~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~  240 (309)
                      .   +....   .++...+.+....|-|...-..-.....+    +.-++|++.|.
T Consensus       245 ~---r~~i~---~gd~R~~~~~~~AdrVnLGLlPSse~~W~----~A~k~Lk~egg  290 (351)
T KOG1227|consen  245 D---RCRIT---EGDNRNPKPRLRADRVNLGLLPSSEQGWP----TAIKALKPEGG  290 (351)
T ss_pred             H---HHHhh---hccccccCccccchheeeccccccccchH----HHHHHhhhcCC
Confidence            2   11111   11222333456678777754443344333    44556777764

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.45  E-value=0.032  Score=51.50  Aligned_cols=95  Identities=12%  Similarity=-0.044  Sum_probs=66.4

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      ...+|+|+|+|.+.-.+...++  +|-+++.+...+-.++.++. .++.    .+...-+       .. .++-|+|++-
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-~gV~----~v~gdmf-------q~-~P~~daI~mk  243 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-PGVE----HVAGDMF-------QD-TPKGDAIWMK  243 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-CCcc----eeccccc-------cc-CCCcCeEEEE
Confidence            6889999999988777767654  58888887776666666654 4431    1111111       11 2445899999


Q ss_pred             CCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          216 DCTFFK--EFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       216 d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      -++++.  ++...+++..++-|+++|  .+++..
T Consensus       244 WiLhdwtDedcvkiLknC~~sL~~~G--kIiv~E  275 (342)
T KOG3178|consen  244 WILHDWTDEDCVKILKNCKKSLPPGG--KIIVVE  275 (342)
T ss_pred             eecccCChHHHHHHHHHHHHhCCCCC--EEEEEe
Confidence            999995  556778999999999999  565554

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.34  E-value=0.019  Score=50.78  Aligned_cols=142  Identities=11%  Similarity=0.013  Sum_probs=76.4

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+..++...  .....+|+|||||.=-+++......+...++|.|++..+++.+.+-+..-+.     ...+...|.- 
T Consensus        93 d~fY~~if~~--~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-----~~~~~v~Dl~-  164 (251)
T PF07091_consen   93 DEFYDEIFGR--IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-----PHDARVRDLL-  164 (251)
T ss_dssp             HHHHHHHCCC--S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT------CEEEEEE-TT-
T ss_pred             HHHHHHHHhc--CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-----CcceeEeeee-
Confidence            4444445443  2236799999999887777655544557999999999999999988777665     2333333222 


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----Cc-----hHHHHHHHHHhCCCeEE
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----GD-----SLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----~~-----~~~~f~~~~~~~G~~~~  269 (309)
                        ...+....|+.+.--++...+....  ....++|..-....++++-|.+     ..     ....|...+.+.|+.+.
T Consensus       165 --~~~~~~~~DlaLllK~lp~le~q~~--g~g~~ll~~~~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~  240 (251)
T PF07091_consen  165 --SDPPKEPADLALLLKTLPCLERQRR--GAGLELLDALRSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVD  240 (251)
T ss_dssp             --TSHTTSEESEEEEET-HHHHHHHST--THHHHHHHHSCESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEE
T ss_pred             --ccCCCCCcchhhHHHHHHHHHHHhc--chHHHHHHHhCCCeEEEeccccccccCccccccCHHHHHHHhcccCCceee
Confidence              1224467899988544332211111  1112233322222455555543     11     12345556667777776


Q ss_pred             EEec
Q 021691          270 IIEN  273 (309)
Q Consensus       270 ~~~~  273 (309)
                      ..+.
T Consensus       241 ~~~~  244 (251)
T PF07091_consen  241 RLTF  244 (251)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            6654

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.33  E-value=0.015  Score=53.15  Aligned_cols=60  Identities=15%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA  180 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~  180 (309)
                      +|.+-+.+.....+|..++|.=+|.|..+.++++.++..+|+++|.++.+++.+++++..
T Consensus         7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~   66 (305)
T TIGR00006         7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD   66 (305)
T ss_pred             hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            444445554455678899999999999999999887668999999999999999988764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.24  E-value=0.042  Score=49.17  Aligned_cols=126  Identities=11%  Similarity=0.071  Sum_probs=69.8

Q ss_pred             CeEEEeCCCC---ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC----------
Q 021691          136 KRVIELGSGY---GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF----------  202 (309)
Q Consensus       136 ~~VLELG~Gt---G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~----------  202 (309)
                      ...||||||.   |.+-...-+..+.++|+-+|.+|-++..++.-+..+.-    ....+...|..+...          
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~----g~t~~v~aD~r~p~~iL~~p~~~~~  145 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR----GRTAYVQADLRDPEAILAHPEVRGL  145 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT----SEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC----ccEEEEeCCCCCHHHHhcCHHHHhc
Confidence            5799999993   55444444456788999999999999999987766532    234555555543211          


Q ss_pred             CCCCCCccEEEEcCCCCCc---ccHHHHHHHHHHHHhcCCCeEEEEEeecC---CchHHHHHHHHHhCCCeE
Q 021691          203 PYIVDTFDVIVASDCTFFK---EFHKDLARIIKFLLKKVGPSEALFFSPKR---GDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---~~~~~~f~~~~~~~G~~~  268 (309)
                      -....+. .|++..++|+.   ++...++..++..|.+|.  .+.+.+...   +...+.+.+.+.+.+..+
T Consensus       146 lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS--~L~ish~t~d~~p~~~~~~~~~~~~~~~~~  214 (267)
T PF04672_consen  146 LDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGS--YLAISHATDDGAPERAEALEAVYAQAGSPG  214 (267)
T ss_dssp             --TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT---EEEEEEEB-TTSHHHHHHHHHHHHHCCS--
T ss_pred             CCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCc--eEEEEecCCCCCHHHHHHHHHHHHcCCCCc
Confidence            0112222 35566777774   568889999999999988  555544332   223345666666665443

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.14  E-value=0.048  Score=44.05  Aligned_cols=108  Identities=13%  Similarity=0.083  Sum_probs=60.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCC-CCccEEEEcCCCCC---------cccHHHHHH
Q 021691          160 EVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIV-DTFDVIVASDCTFF---------KEFHKDLAR  229 (309)
Q Consensus       160 ~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~-~~fDvIi~~d~ly~---------~~~~~~ll~  229 (309)
                      +|++.|+.+++++..+++++.++..   .+++...-.-..-. .... +++|+++-+--.--         .+.--..++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~---~~v~li~~sHe~l~-~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLE---DRVTLILDSHENLD-EYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-G---SGEEEEES-GGGGG-GT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCC---CcEEEEECCHHHHH-hhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            6999999999999999999998873   24544333221111 1122 47898887532111         222345667


Q ss_pred             HHHHHHhcCCCeEEEEEeecCCc-------hHHHHHHHHHhCCCeEEEEec
Q 021691          230 IIKFLLKKVGPSEALFFSPKRGD-------SLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       230 ~l~~lLk~~G~~~~ii~~~~r~~-------~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      .+.++|++||  .+.+..+..+.       ...+|++.+....|.+...+.
T Consensus        77 ~al~lL~~gG--~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~  125 (140)
T PF06962_consen   77 AALELLKPGG--IITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQF  125 (140)
T ss_dssp             HHHHHEEEEE--EEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEE
T ss_pred             HHHHhhccCC--EEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEc
Confidence            7788899999  55555444322       234566666666777755543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.12  E-value=0.07  Score=45.10  Aligned_cols=123  Identities=11%  Similarity=0.045  Sum_probs=70.0

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC------CCC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD------FPY  204 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~------~~~  204 (309)
                      +.++.+|||+||..|..+..+-++. |.+.|.++|+.+        ...-.|...    +..  -|..+..      ...
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~~p~~Ga~~----i~~--~dvtdp~~~~ki~e~l  132 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------IEPPEGATI----IQG--NDVTDPETYRKIFEAL  132 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------ccCCCCccc----ccc--cccCCHHHHHHHHHhC
Confidence            4578999999999999999876666 667899999642        111111110    000  0111111      012


Q ss_pred             CCCCccEEEEcCCCCCc-----ccHHHHHHH-------HHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          205 IVDTFDVIVASDCTFFK-----EFHKDLARI-------IKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~-----~~~~~ll~~-------l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      +..+.|+|++ |.....     -++..+++.       ...++.|+|   .+++-...+.....|...+.+.--.|..+.
T Consensus       133 p~r~VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g---~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vK  208 (232)
T KOG4589|consen  133 PNRPVDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNG---SFVCKLWDGSEEALLQRRLQAVFTNVKKVK  208 (232)
T ss_pred             CCCcccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCc---EEEEEEecCCchHHHHHHHHHHhhhcEeeC
Confidence            3467899988 666552     234443333       334567888   455555555555667777766533444443

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.04  E-value=0.019  Score=52.98  Aligned_cols=116  Identities=13%  Similarity=0.217  Sum_probs=68.9

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-----CC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-----PY  204 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-----~~  204 (309)
                      ..|..++|||+|.|.|....++-..+|. ..++.++.|+.. ..+-.-+..|-.        ....+|...+.     +.
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l-rkV~~tl~~nv~--------t~~td~r~s~vt~dRl~l  180 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL-RKVGDTLAENVS--------TEKTDWRASDVTEDRLSL  180 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH-HHHHHHHHhhcc--------cccCCCCCCccchhccCC
Confidence            4567789999999988766554444443 457777777643 323233333322        22244443322     11


Q ss_pred             -CCCCccEEEEcCCCCCc---ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHH
Q 021691          205 -IVDTFDVIVASDCTFFK---EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKF  257 (309)
Q Consensus       205 -~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f  257 (309)
                       ....+++|+..|=+-..   ..+...++.+..++.+||  .++++.+..+..++..
T Consensus       181 p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg--~lVivErGtp~Gf~~I  235 (484)
T COG5459         181 PAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGG--HLVIVERGTPAGFERI  235 (484)
T ss_pred             CccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCC--eEEEEeCCCchhHHHH
Confidence             13467888777644332   334558888899999988  6777776665555443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.98  E-value=0.029  Score=52.55  Aligned_cols=104  Identities=14%  Similarity=0.086  Sum_probs=67.8

Q ss_pred             cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCCCCCc
Q 021691          132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYIVDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~~~~f  209 (309)
                      ...+.+|+=+|||. |++++.+|+..++.+|+++|.+++=++.+++.............      +..... .......|
T Consensus       166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~------~~~~~~~~~t~g~g~  239 (350)
T COG1063         166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSED------DAGAEILELTGGRGA  239 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccc------cHHHHHHHHhCCCCC
Confidence            34455999999996 99999999999999999999999999988763222111000000      000000 00112368


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      |+++-+--      .+..+....++++++|  .+++....
T Consensus       240 D~vie~~G------~~~~~~~ai~~~r~gG--~v~~vGv~  271 (350)
T COG1063         240 DVVIEAVG------SPPALDQALEALRPGG--TVVVVGVY  271 (350)
T ss_pred             CEEEECCC------CHHHHHHHHHHhcCCC--EEEEEecc
Confidence            99887433      4567888889999999  56555544

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.89  E-value=0.099  Score=51.36  Aligned_cols=107  Identities=18%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC--------CC-
Q 021691          132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ--------DD-  201 (309)
Q Consensus       132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~--------~~-  201 (309)
                      ..++.+|+=+|||. |+.++..|+..|+ +|+++|.+++.++.++.-    |..+  ..+....-++..        .+ 
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA~~--v~i~~~e~~~~~~gya~~~s~~~  234 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GAEF--LELDFEEEGGSGDGYAKVMSEEF  234 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCeE--EEeccccccccccchhhhcchhH
Confidence            45789999999995 9999999999887 899999999988887752    2210  000000000000        00 


Q ss_pred             -------CCCCCCCccEEEEcCCCCCcccHHHH-HHHHHHHHhcCCCeEEEEEee
Q 021691          202 -------FPYIVDTFDVIVASDCTFFKEFHKDL-ARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       202 -------~~~~~~~fDvIi~~d~ly~~~~~~~l-l~~l~~lLk~~G~~~~ii~~~  248 (309)
                             .......+|+||.+-..-.... +.+ .+...+.++++|  .++....
T Consensus       235 ~~~~~~~~~~~~~gaDVVIetag~pg~~a-P~lit~~~v~~mkpGg--vIVdvg~  286 (509)
T PRK09424        235 IKAEMALFAEQAKEVDIIITTALIPGKPA-PKLITAEMVASMKPGS--VIVDLAA  286 (509)
T ss_pred             HHHHHHHHHhccCCCCEEEECCCCCcccC-cchHHHHHHHhcCCCC--EEEEEcc
Confidence                   0000146899998543322222 344 488899999999  5555543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.71  E-value=0.096  Score=48.62  Aligned_cols=91  Identities=15%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             cCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC-CCCCCCCCC
Q 021691          130 ADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN-QDDFPYIVD  207 (309)
Q Consensus       130 ~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~-~~~~~~~~~  207 (309)
                      ....+|++|+=.|+| .|..++.+|+..+ ++|+++|.+++-++.+++--...          +  .++. .+.......
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~----------~--i~~~~~~~~~~~~~  228 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADH----------V--INSSDSDALEAVKE  228 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcE----------E--EEcCCchhhHHhHh
Confidence            356689999999998 3677888899777 79999999999888887532111          1  1222 111112223


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCC
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGP  240 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~  240 (309)
                      .||+|+..-      . +..+....++|+++|+
T Consensus       229 ~~d~ii~tv------~-~~~~~~~l~~l~~~G~  254 (339)
T COG1064         229 IADAIIDTV------G-PATLEPSLKALRRGGT  254 (339)
T ss_pred             hCcEEEECC------C-hhhHHHHHHHHhcCCE
Confidence            499998842      2 5566777788888883

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.66  E-value=0.083  Score=46.48  Aligned_cols=124  Identities=15%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCC-----CceEEEEeeCCCCCCCCCCCCccE
Q 021691          137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGG-----TTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~-----~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      +|||.=+|-|.-++.+|..  +.+|++++.||-+-..++.-+.........     .++++...|-.+.. .....+||+
T Consensus        78 ~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L-~~~~~s~DV  154 (234)
T PF04445_consen   78 SVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL-RQPDNSFDV  154 (234)
T ss_dssp             -EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC-CCHSS--SE
T ss_pred             EEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH-hhcCCCCCE
Confidence            8999999999999998865  458999999997777776554432211111     24555444332211 134578999


Q ss_pred             EEEcCCCCCcccHHHH----HHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCc
Q 021691          212 IVASDCTFFKEFHKDL----ARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~l----l~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      |.. |+.|-.....++    ++.++.++..+.            .+.+.+.++++-+.-.|+.-+....
T Consensus       155 VY~-DPMFp~~~ksa~vkk~m~~lr~L~~~d~------------~~~ell~~Alr~Ar~RVVvKrp~~a  210 (234)
T PF04445_consen  155 VYF-DPMFPERKKSALVKKEMRVLRDLAGHDP------------DAEELLEEALRVARKRVVVKRPRKA  210 (234)
T ss_dssp             EEE---S-----TTTT-SHHHHHHHHHHSHHT------------TGGGGHHHHHHH-SSEEEEEEETT-
T ss_pred             EEE-CCCCCCcccccccccchHHHHHhhccCc------------CHHHHHHHHHHhcCcEEEEecCCCC
Confidence            999 888875433333    344444443221            2223344555655666665544333

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.63  E-value=0.19  Score=47.60  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=74.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..+|.||||+-|-.|.=+.++|+... .+.|+|.|.+..-+..++.|+...|..    +..+...|-.........++||
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~----ntiv~n~D~~ef~~~~~~~~fD  314 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT----NTIVSNYDGREFPEKEFPGSFD  314 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC----ceEEEccCcccccccccCcccc
Confidence            34789999999998766666666543 468999999999999999999998873    3334444433221122234899


Q ss_pred             EEEEcC-C-----CCCc----------------ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          211 VIVASD-C-----TFFK----------------EFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       211 vIi~~d-~-----ly~~----------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      -|+.-. |     ++-.                .....|+.....++++||  .++++++.
T Consensus       315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GG--vLVYSTCS  373 (460)
T KOG1122|consen  315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGG--VLVYSTCS  373 (460)
T ss_pred             eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCc--EEEEEeee
Confidence            998722 2     1111                123457777788999999  55555543

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.63  E-value=0.027  Score=51.61  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=70.8

Q ss_pred             eEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcC
Q 021691          137 RVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASD  216 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d  216 (309)
                      +|+||-||.|.+++.+.. .|..-|.++|+++.+.+..+.|.. +..          ..|............+|++++..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~-ag~~~~~a~e~~~~a~~~y~~N~~-~~~----------~~Di~~~~~~~l~~~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQ-AGFEVVWAVEIDPDACETYKANFP-EVI----------CGDITEIDPSDLPKDVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHH-TTEEEEEEEESSHHHHHHHHHHHT-EEE----------ESHGGGCHHHHHHHT-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHh-cCcEEEEEeecCHHHHHhhhhccc-ccc----------cccccccccccccccceEEEecc
Confidence            799999999999988655 455678999999999999999876 211          11111111001111589999977


Q ss_pred             CCCC----------cccHHHHHHHHHHHHhcCCCeEEEEEe-ecC------CchHHHHHHHHHhCCCeEEE
Q 021691          217 CTFF----------KEFHKDLARIIKFLLKKVGPSEALFFS-PKR------GDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       217 ~ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~-~~r------~~~~~~f~~~~~~~G~~~~~  270 (309)
                      +.-.          .+....|+..+.++++.-.+ .++++. ...      ...++.+.+.+++.|+.+..
T Consensus        70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P-k~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~  139 (335)
T PF00145_consen   70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP-KYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQW  139 (335)
T ss_dssp             --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS--SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred             CCceEeccccccccccccchhhHHHHHHHhhccc-eEEEecccceeeccccccccccccccccccceeehh
Confidence            5433          11223355555555544333 344444 221      24578888999999987753

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.58  E-value=0.061  Score=46.92  Aligned_cols=98  Identities=14%  Similarity=0.098  Sum_probs=59.4

Q ss_pred             HHHHHHHhhCcCcC--CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc-cCCCCCCceEEEEe
Q 021691          120 DVLAFFSLSHADMF--RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN-SGAFGGTTVKSMTL  195 (309)
Q Consensus       120 ~~La~~l~~~~~~~--~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l  195 (309)
                      .+|++.+.+.....  ++.++||+|.|. .+.-+.=...+ +.+.+++|+++..++.++.++..| ++.   ..++...-
T Consensus        62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~---~~I~lr~q  137 (292)
T COG3129          62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLE---RAIRLRRQ  137 (292)
T ss_pred             HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchh---hheeEEec
Confidence            55777766644333  445788988774 22222111122 468999999999999999999999 552   22332221


Q ss_pred             eCCCCCC---CCCCCCccEEEEcCCCCCc
Q 021691          196 HWNQDDF---PYIVDTFDVIVASDCTFFK  221 (309)
Q Consensus       196 ~w~~~~~---~~~~~~fDvIi~~d~ly~~  221 (309)
                      .=...-.   ....+.||+++|+.++|..
T Consensus       138 k~~~~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         138 KDSDAIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             cCccccccccccccceeeeEecCCCcchh
Confidence            1000000   1124689999998888764

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=95.54  E-value=0.18  Score=42.05  Aligned_cols=135  Identities=16%  Similarity=0.072  Sum_probs=78.4

Q ss_pred             eCCCCChhhHHHHHhcC-CcEEEEEcCCHH--HHHH---HHHHHHhccCCCCCCceEEEEeeCCCCCC--CCCCCCccEE
Q 021691          141 LGSGYGLAGLVIAATTE-ALEVVISDGNPQ--VVDY---IQRNVDANSGAFGGTTVKSMTLHWNQDDF--PYIVDTFDVI  212 (309)
Q Consensus       141 LG~GtG~~~l~la~~~~-~~~V~~tD~~~~--~l~~---~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--~~~~~~fDvI  212 (309)
                      +|=|-=-+++.||+..+ +..+++|-.+.+  +.+.   +..|++.-...  ...| ...+|-..-..  ......||.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~--g~~V-~~~VDat~l~~~~~~~~~~FDrI   79 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL--GVTV-LHGVDATKLHKHFRLKNQRFDRI   79 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc--CCcc-ccCCCCCcccccccccCCcCCEE
Confidence            34455566777788777 778888876542  2221   22333322100  0111 11111111111  1235789999


Q ss_pred             EEcCCCCC-------------cccHHHHHHHHHHHHhcCCCeEEEEEeecC-CchHHHHHHHHHhCCCeEEEEeccCchh
Q 021691          213 VASDCTFF-------------KEFHKDLARIIKFLLKKVGPSEALFFSPKR-GDSLDKFLEEIEGNHLHFSIIENYNAEI  278 (309)
Q Consensus       213 i~~d~ly~-------------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-~~~~~~f~~~~~~~G~~~~~~~~~~~~~  278 (309)
                      +-+.+--.             ...+..+++....+|+++|  .+.+..... +.......+.+++.|+.......|+...
T Consensus        80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G--~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~  157 (166)
T PF10354_consen   80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDG--EIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPSD  157 (166)
T ss_pred             EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHHH
Confidence            99765443             1245667888899999999  555544333 3355567788999999998888777766


Q ss_pred             hh
Q 021691          279 WK  280 (309)
Q Consensus       279 ~~  280 (309)
                      |.
T Consensus       158 yp  159 (166)
T PF10354_consen  158 YP  159 (166)
T ss_pred             CC
Confidence            63

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.51  E-value=0.18  Score=46.56  Aligned_cols=120  Identities=16%  Similarity=0.126  Sum_probs=74.6

Q ss_pred             EEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCC
Q 021691          138 VIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDC  217 (309)
Q Consensus       138 VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~  217 (309)
                      |+||.||.|.+++.+-. .|..-+.++|.++.+.+..+.|... ...  ...+  ..++.     .. ...+|++++..+
T Consensus         1 vidLF~G~GG~~~Gl~~-aG~~~~~a~e~~~~a~~ty~~N~~~-~~~--~~Di--~~~~~-----~~-~~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQ-AGFKCVFASEIDKYAQKTYEANFGN-KVP--FGDI--TKISP-----SD-IPDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHhCCC-CCC--ccCh--hhhhh-----hh-CCCcCEEEecCC
Confidence            68999999999888654 4544567899999999999888643 110  1111  11111     01 135899999765


Q ss_pred             CCC----------cccHHHHHHHHHHHHhcCCCeEEEEEe-ec------CCchHHHHHHHHHhCCCeEEE
Q 021691          218 TFF----------KEFHKDLARIIKFLLKKVGPSEALFFS-PK------RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       218 ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~-~~------r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      .-.          .+....|+..+.++++.-.+ .++++. ..      ....+..+...+++.|+.+..
T Consensus        69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P-~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~  137 (315)
T TIGR00675        69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKP-KFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYY  137 (315)
T ss_pred             CcccchhcccCCCCCchhhHHHHHHHHHhhcCC-CEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEE
Confidence            432          12344577777777765444 334433 21      235677888899999998754

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.50  E-value=0.088  Score=48.88  Aligned_cols=101  Identities=18%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~  208 (309)
                      ....+|++||=.|||. |..++.+|+..++.+|+++|.+++-++.+++    .+..   .-+....-++.+  .....+.
T Consensus       165 ~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~--~~~~~g~  235 (343)
T PRK09880        165 AGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD---KLVNPQNDDLDH--YKAEKGY  235 (343)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc---EEecCCcccHHH--HhccCCC
Confidence            3445789999999984 8888888888877789999999988877764    2221   000000000100  0011235


Q ss_pred             ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +|+|+-+  .-.    +..+....++++++|  .++.+.
T Consensus       236 ~D~vid~--~G~----~~~~~~~~~~l~~~G--~iv~~G  266 (343)
T PRK09880        236 FDVSFEV--SGH----PSSINTCLEVTRAKG--VMVQVG  266 (343)
T ss_pred             CCEEEEC--CCC----HHHHHHHHHHhhcCC--EEEEEc
Confidence            8988763  221    345677778899999  555554

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.49  E-value=0.086  Score=45.14  Aligned_cols=47  Identities=19%  Similarity=0.303  Sum_probs=42.2

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhcc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANS  182 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~  182 (309)
                      -.+.|||||.|.+-+.++-.+|..-++|.++-..+-++++..+.+-.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR  108 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR  108 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence            36899999999999999999999999999999999999999988754

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.04  E-value=0.23  Score=45.39  Aligned_cols=88  Identities=15%  Similarity=0.101  Sum_probs=57.1

Q ss_pred             CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .++++||=+|||. |++++.+|+..|+..|+++|.+++-++.+...    ..      +     +-...    ....+|+
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~------i-----~~~~~----~~~g~Dv  203 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV------L-----DPEKD----PRRDYRA  203 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc------c-----Chhhc----cCCCCCE
Confidence            3678899999984 88888889988877788899887665554421    11      0     00000    1235898


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |+-+  .-    .+..+....++++++|  .++++.
T Consensus       204 vid~--~G----~~~~~~~~~~~l~~~G--~iv~~G  231 (308)
T TIGR01202       204 IYDA--SG----DPSLIDTLVRRLAKGG--EIVLAG  231 (308)
T ss_pred             EEEC--CC----CHHHHHHHHHhhhcCc--EEEEEe
Confidence            8753  22    2346677788999999  555544

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.03  E-value=0.022  Score=53.74  Aligned_cols=70  Identities=21%  Similarity=0.230  Sum_probs=54.8

Q ss_pred             CceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC
Q 021691          111 GLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA  184 (309)
Q Consensus       111 G~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~  184 (309)
                      |-+ .|.+-+..-+--. ..-..+|..|.|+-||.|-+++.+++.  +..|++-|.+|++++.++.|+..|.+.
T Consensus       228 skV-YWnsRL~~Eherl-sg~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~  297 (495)
T KOG2078|consen  228 SKV-YWNSRLSHEHERL-SGLFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVD  297 (495)
T ss_pred             ceE-EeeccchhHHHHH-hhccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccc
Confidence            444 6996554432222 223457889999999999999997776  579999999999999999999999875

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.81  E-value=0.21  Score=46.34  Aligned_cols=123  Identities=16%  Similarity=0.146  Sum_probs=76.8

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC-CccEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD-TFDVIV  213 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~-~fDvIi  213 (309)
                      ..+++||-||.|.+++.+... |..-+.++|+++.+++.-+.|......         ...|........... .+|+++
T Consensus         3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~~~~---------~~~di~~~~~~~~~~~~~Dvli   72 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPHGDI---------ILGDIKELDGEALRKSDVDVLI   72 (328)
T ss_pred             CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCCCce---------eechHhhcChhhccccCCCEEE
Confidence            358999999999999876554 455688999999999999888653111         011111111111112 789999


Q ss_pred             EcCCCCC----------cccHHHHHHHHHHHHhcCCCeEEEEEeec------CCchHHHHHHHHHhCCCeE
Q 021691          214 ASDCTFF----------KEFHKDLARIIKFLLKKVGPSEALFFSPK------RGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       214 ~~d~ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~------r~~~~~~f~~~~~~~G~~~  268 (309)
                      +..+...          .+....|+-.+.++++.-.+ .++++..-      ...+++.+.+.+++.|+.+
T Consensus        73 gGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~  142 (328)
T COG0270          73 GGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYGV  142 (328)
T ss_pred             eCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCcc
Confidence            9876644          12344455666666554443 33333321      3457888999999999863

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=94.66  E-value=0.073  Score=47.83  Aligned_cols=113  Identities=14%  Similarity=0.153  Sum_probs=74.3

Q ss_pred             cCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691          107 IDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG  186 (309)
Q Consensus       107 ~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~  186 (309)
                      +..|-.. .||-..-   |+...+   .|..++|.|||.|-....    .+...+++.|.+...+.-+++.   ++.   
T Consensus        25 fs~tr~~-~Wp~v~q---fl~~~~---~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~---~~~---   87 (293)
T KOG1331|consen   25 FSATRAA-PWPMVRQ---FLDSQP---TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS---GGD---   87 (293)
T ss_pred             ccccccC-ccHHHHH---HHhccC---CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC---CCc---
Confidence            4556666 8996544   343333   478999999999965432    3556799999887766665532   110   


Q ss_pred             CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcc---cHHHHHHHHHHHHhcCCCeE
Q 021691          187 GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKE---FHKDLARIIKFLLKKVGPSE  242 (309)
Q Consensus       187 ~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~---~~~~ll~~l~~lLk~~G~~~  242 (309)
                          .+...|  ....+....+||.+++..++||..   ....+++.+.+.++|+|...
T Consensus        88 ----~~~~ad--~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~l  140 (293)
T KOG1331|consen   88 ----NVCRAD--ALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNAL  140 (293)
T ss_pred             ----eeehhh--hhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence                111111  123345567899999999999854   46678899999999999533

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=94.11  E-value=0.13  Score=48.13  Aligned_cols=54  Identities=22%  Similarity=0.308  Sum_probs=40.4

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQ  175 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~  175 (309)
                      .|++.+.+......-..|+|+|+|.|.++.+++-.++ -.|.++|.|....+.++
T Consensus       140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~-lsV~aIegsq~~~~ra~  193 (476)
T KOG2651|consen  140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG-LSVKAIEGSQRLVERAQ  193 (476)
T ss_pred             HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC-ceEEEeccchHHHHHHH
Confidence            3555555444444557999999999999999887764 58999999977666654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.07  E-value=0.41  Score=45.35  Aligned_cols=127  Identities=17%  Similarity=0.159  Sum_probs=73.8

Q ss_pred             CeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCCccEEE
Q 021691          136 KRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDTFDVIV  213 (309)
Q Consensus       136 ~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~fDvIi  213 (309)
                      ++||=||||. |......+...+..+|++.|.+++..+.+..+..        .++++..+|..+.+. ...-..+|+||
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--------~~v~~~~vD~~d~~al~~li~~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--------GKVEALQVDAADVDALVALIKDFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--------ccceeEEecccChHHHHHHHhcCCEEE
Confidence            5799999973 6444433333445799999999887776655422        256777777655421 12234569999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCchhh
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIW  279 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~~~  279 (309)
                      .+-+.|...      ..++..++.+-  ..+-.+...... .++.+.++++|.....---+++.+-
T Consensus        74 n~~p~~~~~------~i~ka~i~~gv--~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~  130 (389)
T COG1748          74 NAAPPFVDL------TILKACIKTGV--DYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT  130 (389)
T ss_pred             EeCCchhhH------HHHHHHHHhCC--CEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence            976655432      33444444432  222223233333 6777888888877654434555433

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.76  E-value=0.15  Score=43.85  Aligned_cols=54  Identities=7%  Similarity=0.003  Sum_probs=38.7

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ..|.+.+.... ..+|..|||--||+|..++++.+.  +.+.+++|++++..+.+++
T Consensus       178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence            44555555432 246889999999999999885554  6789999999999988864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.70  E-value=0.14  Score=49.58  Aligned_cols=121  Identities=15%  Similarity=0.174  Sum_probs=72.2

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      ++|+|+.+|.|.++-+|...    .|+..-.-|..-.+.-.-+-..|+       -....||.+. .+.-..+||+|-++
T Consensus       367 RNVMDMnAg~GGFAAAL~~~----~VWVMNVVP~~~~ntL~vIydRGL-------IG~yhDWCE~-fsTYPRTYDLlHA~  434 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDD----PVWVMNVVPVSGPNTLPVIYDRGL-------IGVYHDWCEA-FSTYPRTYDLLHAD  434 (506)
T ss_pred             eeeeeecccccHHHHHhccC----CceEEEecccCCCCcchhhhhccc-------chhccchhhc-cCCCCcchhheehh
Confidence            58999999999887665432    355544333211111112222333       2235678743 34456899999886


Q ss_pred             CCCCC---cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          216 DCTFF---KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       216 d~ly~---~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      .++-.   .-.+..++-++.|+|+|+|  .+++-+.  .....+....+....+.+....
T Consensus       435 ~lfs~~~~rC~~~~illEmDRILRP~G--~~iiRD~--~~vl~~v~~i~~~lrW~~~~~d  490 (506)
T PF03141_consen  435 GLFSLYKDRCEMEDILLEMDRILRPGG--WVIIRDT--VDVLEKVKKIAKSLRWEVRIHD  490 (506)
T ss_pred             hhhhhhcccccHHHHHHHhHhhcCCCc--eEEEecc--HHHHHHHHHHHHhCcceEEEEe
Confidence            65433   3457889999999999999  5555222  2344555666666666655443

; GO: 0008168 methyltransferase activity

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=93.66  E-value=0.79  Score=42.32  Aligned_cols=93  Identities=13%  Similarity=-0.013  Sum_probs=59.3

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~  208 (309)
                      ....+|.+||=.|+|. |...+.+|+..++ +|+++|.+++-++.+++    .|..    .+  ...  ...    ....
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~----~v--i~~--~~~----~~~~  223 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAA----SA--GGA--YDT----PPEP  223 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCc----ee--ccc--ccc----Cccc
Confidence            4556789999999874 7777777887765 79999998887666654    2321    11  000  000    1235


Q ss_pred             ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +|+++-.+..      ...+....++++++|  .++++.
T Consensus       224 ~d~~i~~~~~------~~~~~~~~~~l~~~G--~~v~~G  254 (329)
T TIGR02822       224 LDAAILFAPA------GGLVPPALEALDRGG--VLAVAG  254 (329)
T ss_pred             ceEEEECCCc------HHHHHHHHHhhCCCc--EEEEEe
Confidence            8887765442      246777778999999  455544

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK10458 DNA cytosine methylase; Provisional

Probab=93.62  E-value=1.2  Score=43.37  Aligned_cols=131  Identities=14%  Similarity=0.112  Sum_probs=76.3

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC-CCCCCceEEEEeeCCCCC----------CC
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG-AFGGTTVKSMTLHWNQDD----------FP  203 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~-~~~~~~v~~~~l~w~~~~----------~~  203 (309)
                      ..+++||-||.|.+++.+-. .|..-|.++|+++.+.+.-+.|...... ..-...+  ..++.....          ..
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~-aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI--~~i~~~~~~~~~~~~~~~~~~  164 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEA-IGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDI--RDITLSHKEGVSDEEAAEHIR  164 (467)
T ss_pred             CceEEEeCcCccHHHHHHHH-cCCEEEEEEechHHHHHHHHHHcCCCCccceeccCh--hhCccccccccchhhhhhhhh
Confidence            45999999999999888644 4666778999999998888887521110 0000111  111110000          00


Q ss_pred             CCCCCccEEEEcCCCCCc-------------------ccHHHHHHHHHHHHhcCCCeEEEEEee-------cCCchHHHH
Q 021691          204 YIVDTFDVIVASDCTFFK-------------------EFHKDLARIIKFLLKKVGPSEALFFSP-------KRGDSLDKF  257 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~-------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~-------~r~~~~~~f  257 (309)
                      .....+|++++..+...-                   +....|+..+.++++.-.+ .++++..       ....+++.+
T Consensus       165 ~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kP-k~fvlENV~gl~s~~~g~~f~~i  243 (467)
T PRK10458        165 QHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRP-AIFVLENVKNLKSHDKGKTFRII  243 (467)
T ss_pred             ccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCC-CEEEEeCcHhhhcccccHHHHHH
Confidence            112358999987755321                   1123366666677654433 3444332       234578889


Q ss_pred             HHHHHhCCCeEE
Q 021691          258 LEEIEGNHLHFS  269 (309)
Q Consensus       258 ~~~~~~~G~~~~  269 (309)
                      .+.+++.|+.+.
T Consensus       244 ~~~L~~lGY~v~  255 (467)
T PRK10458        244 MQTLDELGYDVA  255 (467)
T ss_pred             HHHHHHcCCeEE
Confidence            999999999875

>PRK11524 putative methyltransferase; Provisional

Probab=93.49  E-value=0.26  Score=44.82  Aligned_cols=58  Identities=16%  Similarity=0.057  Sum_probs=44.6

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN  181 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n  181 (309)
                      .|.+.+.... ..+|..|||--+|+|..++++.+.  +.+.+|+|++++.++.+++++...
T Consensus       196 ~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~~  253 (284)
T PRK11524        196 ALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDVA  253 (284)
T ss_pred             HHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhc
Confidence            3444444321 257889999999999999885444  679999999999999999987643

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.45  E-value=0.7  Score=44.64  Aligned_cols=103  Identities=12%  Similarity=0.189  Sum_probs=67.0

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      -++|.+|||.--+...+-+ .|-..|+.+|+|+-+++.+...-   +..  .........+-  ....+.+++||+|+.-
T Consensus        50 ~~~l~lGCGNS~l~e~ly~-~G~~dI~~iD~S~V~V~~m~~~~---~~~--~~~~~~~~~d~--~~l~fedESFdiVIdk  121 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYK-NGFEDITNIDSSSVVVAAMQVRN---AKE--RPEMQMVEMDM--DQLVFEDESFDIVIDK  121 (482)
T ss_pred             ceeEeecCCCCHHHHHHHh-cCCCCceeccccHHHHHHHHhcc---ccC--CcceEEEEecc--hhccCCCcceeEEEec
Confidence            3899999999988877655 45678999999999888776532   111  12233333322  2234456789988874


Q ss_pred             CCC----------CCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          216 DCT----------FFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       216 d~l----------y~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ..+          ++.......+..+.++++++|+...+.+
T Consensus       122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             CccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            332          2233456678899999999995433333

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.36  E-value=0.091  Score=50.60  Aligned_cols=99  Identities=29%  Similarity=0.243  Sum_probs=70.0

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC--CCCCCCCCcc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD--DFPYIVDTFD  210 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~--~~~~~~~~fD  210 (309)
                      .+-+|||-=|++|+-++..|+..++ .+|++-|.++.++..+++|++.|+..   ..+....-|....  ..+.....||
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~---~ive~~~~DA~~lM~~~~~~~~~FD  185 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE---DIVEPHHSDANVLMYEHPMVAKFFD  185 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch---hhcccccchHHHHHHhccccccccc
Confidence            4679999999999999998888765 58999999999999999999999763   2222222221111  1112246899


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +|=. |++-..   ..+++...+.++.+|
T Consensus       186 vIDL-DPyGs~---s~FLDsAvqav~~gG  210 (525)
T KOG1253|consen  186 VIDL-DPYGSP---SPFLDSAVQAVRDGG  210 (525)
T ss_pred             eEec-CCCCCc---cHHHHHHHHHhhcCC
Confidence            9855 664433   456777777778888

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.36  E-value=0.34  Score=45.17  Aligned_cols=63  Identities=24%  Similarity=0.246  Sum_probs=45.0

Q ss_pred             HHHHHHHHhhCc---CcCCCCeEEEeCCCCChhhHHHHHhc--------CCcEEEEEcCCHHHHHHHHHHHHhc
Q 021691          119 EDVLAFFSLSHA---DMFRSKRVIELGSGYGLAGLVIAATT--------EALEVVISDGNPQVVDYIQRNVDAN  181 (309)
Q Consensus       119 a~~La~~l~~~~---~~~~g~~VLELG~GtG~~~l~la~~~--------~~~~V~~tD~~~~~l~~~~~n~~~n  181 (309)
                      ++.+|.|+.+.-   .....-.++|+|+|+|.+..-+.+..        .+.++..++.|++..+.=+.+++..
T Consensus        59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            466777777642   22234589999999998876555443        3679999999999877777666654

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=93.12  E-value=0.29  Score=42.17  Aligned_cols=106  Identities=9%  Similarity=-0.005  Sum_probs=53.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC----CCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF----PYI  205 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~----~~~  205 (309)
                      +.+.|+|+|.-.|.-.+..|..+    +.++|+++|++....+..  .++...+   ..+|++.+.+..+.+.    ...
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~---~~rI~~i~Gds~d~~~~~~v~~~  106 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM---SPRITFIQGDSIDPEIVDQVREL  106 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-------TTEEEEES-SSSTHHHHTSGSS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc---cCceEEEECCCCCHHHHHHHHHh
Confidence            56799999999887777665432    567999999964322211  1111112   2567777765543321    111


Q ss_pred             --CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          206 --VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       206 --~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                        .....+|+- |.-|..+..-.-++....++++|+  .+++.+
T Consensus       107 ~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~--Y~IVeD  147 (206)
T PF04989_consen  107 ASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGS--YLIVED  147 (206)
T ss_dssp             ----SSEEEEE-SS----SSHHHHHHHHHHT--TT---EEEETS
T ss_pred             hccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCC--EEEEEe
Confidence              233445655 888888888888889999999998  666655

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=93.07  E-value=0.58  Score=42.44  Aligned_cols=107  Identities=19%  Similarity=0.150  Sum_probs=71.5

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ...++||=+|-|-|.+-...+++-.-..++..|++..+++.-++-...-...+...+|.....|...-......++||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            45689999999988776666666445689999999999999888776544334445554443322211111235789999


Q ss_pred             EE--cCCCCC--cccHHHHHHHHHHHHhcCC
Q 021691          213 VA--SDCTFF--KEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       213 i~--~d~ly~--~~~~~~ll~~l~~lLk~~G  239 (309)
                      +.  +|++-.  .......+..+.+.||++|
T Consensus       200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dg  230 (337)
T KOG1562|consen  200 ITDSSDPVGPACALFQKPYFGLVLDALKGDG  230 (337)
T ss_pred             EEecCCccchHHHHHHHHHHHHHHHhhCCCc
Confidence            87  334332  1234667788899999999

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.92  E-value=0.5  Score=43.85  Aligned_cols=94  Identities=10%  Similarity=0.002  Sum_probs=58.1

Q ss_pred             cCCCCeEEEeCCCC-ChhhHHHHHh-cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          132 MFRSKRVIELGSGY-GLAGLVIAAT-TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~Gt-G~~~l~la~~-~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ..+|.+||=+|||. |+..+.+|+. .++.+|+++|.+++-++.++.    .+..     ...  -++.      ....+
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~-----~~~--~~~~------~~~g~  223 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET-----YLI--DDIP------EDLAV  223 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce-----eeh--hhhh------hccCC
Confidence            45789999999984 7777666765 567789999999877776653    1110     000  0111      01248


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |+|+-  +.-.. ..+..+....++++++|  .++++.
T Consensus       224 d~viD--~~G~~-~~~~~~~~~~~~l~~~G--~iv~~G  256 (341)
T cd08237         224 DHAFE--CVGGR-GSQSAINQIIDYIRPQG--TIGLMG  256 (341)
T ss_pred             cEEEE--CCCCC-ccHHHHHHHHHhCcCCc--EEEEEe
Confidence            88874  22211 13456777788999999  555544

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK13699 putative methylase; Provisional

Probab=92.92  E-value=0.42  Score=41.99  Aligned_cols=57  Identities=11%  Similarity=-0.087  Sum_probs=43.5

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN  181 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n  181 (309)
                      |.+.+.... ..+|..|||--||+|..++++.+.  +.+++++|++++..+.+.+.+...
T Consensus       152 l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        152 SLQPLIESF-THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence            444444322 236889999999999999885443  578999999999999998887653

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=92.91  E-value=2.4  Score=37.59  Aligned_cols=148  Identities=13%  Similarity=0.181  Sum_probs=99.4

Q ss_pred             CCCceeecccH---HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691          109 NTGLVCHWPSE---DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF  185 (309)
Q Consensus       109 ~tG~~~~W~sa---~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~  185 (309)
                      .+|...+|.++   ..|..|+....++.+|.+ |..-+|+-.++..+.+  ++.++.+++..|+-...+++|+..     
T Consensus        61 ~~GI~RL~~a~~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR--~qDRl~l~ELHp~D~~~L~~~f~~-----  132 (279)
T COG2961          61 EQGIARLWQAADLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLR--EQDRLVLTELHPSDAPLLRNNFAG-----  132 (279)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcc--hhceeeeeecCccHHHHHHHHhCC-----
Confidence            34444578764   446777776666666666 7889998877666544  367999999999999999888762     


Q ss_pred             CCCceEEEEeeCCCCCCC-C-CCCCccEEEEcCCCC-CcccHHHHHHHHHHHHhcCCC-eEEEEEeecCCchHHHHHHHH
Q 021691          186 GGTTVKSMTLHWNQDDFP-Y-IVDTFDVIVASDCTF-FKEFHKDLARIIKFLLKKVGP-SEALFFSPKRGDSLDKFLEEI  261 (309)
Q Consensus       186 ~~~~v~~~~l~w~~~~~~-~-~~~~fDvIi~~d~ly-~~~~~~~ll~~l~~lLk~~G~-~~~ii~~~~r~~~~~~f~~~~  261 (309)
                       ..++++...|.-..... . +.+.=-+|+. |+.| ...+++.+++++.+.++.-.. ..+|+.-.......+.|.+.+
T Consensus       133 -d~~vrv~~~DG~~~l~a~LPP~erRglVLI-DPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L  210 (279)
T COG2961         133 -DRRVRVLRGDGFLALKAHLPPKERRGLVLI-DPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRAL  210 (279)
T ss_pred             -CcceEEEecCcHHHHhhhCCCCCcceEEEe-CCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHH
Confidence             23566666543221111 1 1233456776 5555 477899999999999986432 244554445567788999999


Q ss_pred             HhCCC
Q 021691          262 EGNHL  266 (309)
Q Consensus       262 ~~~G~  266 (309)
                      ++.|+
T Consensus       211 ~~~~i  215 (279)
T COG2961         211 EALGI  215 (279)
T ss_pred             hhcCc
Confidence            99987

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.81  E-value=1  Score=36.70  Aligned_cols=92  Identities=20%  Similarity=0.124  Sum_probs=56.5

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      .+.+|||+|-|.+-+.+|+ ++...-++++.||=.+.+.+-..-..+..   ....+..-|.-.  ....+-++-+|+.+
T Consensus        74 GklvDlGSGDGRiVlaaar-~g~~~a~GvELNpwLVaysrl~a~R~g~~---k~trf~RkdlwK--~dl~dy~~vviFga  147 (199)
T KOG4058|consen   74 GKLVDLGSGDGRIVLAAAR-CGLRPAVGVELNPWLVAYSRLHAWRAGCA---KSTRFRRKDLWK--VDLRDYRNVVIFGA  147 (199)
T ss_pred             CcEEeccCCCceeehhhhh-hCCCcCCceeccHHHHHHHHHHHHHHhcc---cchhhhhhhhhh--ccccccceEEEeeh
Confidence            3688999999999888655 45678999999999999988777666653   222222222111  11122345556554


Q ss_pred             CCCCCcccHHHHHHHHHHHHhcC
Q 021691          216 DCTFFKEFHKDLARIIKFLLKKV  238 (309)
Q Consensus       216 d~ly~~~~~~~ll~~l~~lLk~~  238 (309)
                           .+.++.|...+..-+..+
T Consensus       148 -----es~m~dLe~KL~~E~p~n  165 (199)
T KOG4058|consen  148 -----ESVMPDLEDKLRTELPAN  165 (199)
T ss_pred             -----HHHHhhhHHHHHhhCcCC
Confidence                 334555555555444333

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.76  E-value=0.39  Score=45.06  Aligned_cols=103  Identities=17%  Similarity=0.062  Sum_probs=60.7

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~  208 (309)
                      ..+.+|.+||=.|+|. |...+.+|+..++.+|+++|.+++-++.+++    .+..   .-+....-+|...-.....+.
T Consensus       187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g  259 (371)
T cd08281         187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGG  259 (371)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCC
Confidence            3456788999999874 7777788888777689999999887777754    2221   001100001100000011225


Q ss_pred             ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +|+|+-+  .-.    ...+....++++++|  .++.+.
T Consensus       260 ~d~vid~--~G~----~~~~~~~~~~l~~~G--~iv~~G  290 (371)
T cd08281         260 VDYAFEM--AGS----VPALETAYEITRRGG--TTVTAG  290 (371)
T ss_pred             CCEEEEC--CCC----hHHHHHHHHHHhcCC--EEEEEc
Confidence            8988753  211    345666778899999  555544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=92.55  E-value=3.5  Score=38.64  Aligned_cols=131  Identities=11%  Similarity=0.053  Sum_probs=73.6

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCC----cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE---eeCCCCCC-
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEA----LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT---LHWNQDDF-  202 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~----~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~---l~w~~~~~-  202 (309)
                      ++.+|.+|||+-+-.|.=++.+....-.    ..|++-|.++.=+..+++.+..-...    .+.+..   ..|..... 
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~----~~~v~~~~~~~~p~~~~~  227 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP----NLLVTNHDASLFPNIYLK  227 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc----ceeeecccceeccccccc
Confidence            4568999999999988766555444322    38999999998888887776432211    111111   11111100 


Q ss_pred             ---CCCCCCccEEEEcCCC--CCc----------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCC--ch
Q 021691          203 ---PYIVDTFDVIVASDCT--FFK----------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRG--DS  253 (309)
Q Consensus       203 ---~~~~~~fDvIi~~d~l--y~~----------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~--~~  253 (309)
                         +.....||-|++ |+.  .+.                      ..--.++..-.++|++||  .++++++.-.  +.
T Consensus       228 ~~~~~~~~~fDrVLv-DVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG--~lVYSTCSLnpieN  304 (375)
T KOG2198|consen  228 DGNDKEQLKFDRVLV-DVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG--RLVYSTCSLNPIEN  304 (375)
T ss_pred             cCchhhhhhcceeEE-ecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCC--EEEEeccCCCchhh
Confidence               112357999988 433  220                      011235666678999999  6777665432  22


Q ss_pred             HHHHHHHHHhCCCeE
Q 021691          254 LDKFLEEIEGNHLHF  268 (309)
Q Consensus       254 ~~~f~~~~~~~G~~~  268 (309)
                      ..-.-+++++.|-.+
T Consensus       305 EaVV~~~L~~~~~~~  319 (375)
T KOG2198|consen  305 EAVVQEALQKVGGAV  319 (375)
T ss_pred             HHHHHHHHHHhcCcc
Confidence            233444555555443

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.38  E-value=1.7  Score=37.96  Aligned_cols=106  Identities=17%  Similarity=0.238  Sum_probs=61.6

Q ss_pred             HHHHHhhCcC-cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          122 LAFFSLSHAD-MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       122 La~~l~~~~~-~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      .+.+...... ..+|.+||-.|+|. |...+.+++..+ .+|++++.+++..+.++..    +..    .    .++...
T Consensus       121 ~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~----~----~~~~~~  187 (271)
T cd05188         121 TAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GAD----H----VIDYKE  187 (271)
T ss_pred             HHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCc----e----eccCCc
Confidence            3444433333 36789999999985 666666677655 7899999988776666432    211    0    011111


Q ss_pred             CCC-----CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          200 DDF-----PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       200 ~~~-----~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ...     ......+|+|+.+-.  .    ......+.+.++++|  .++.+..
T Consensus       188 ~~~~~~~~~~~~~~~d~vi~~~~--~----~~~~~~~~~~l~~~G--~~v~~~~  233 (271)
T cd05188         188 EDLEEELRLTGGGGADVVIDAVG--G----PETLAQALRLLRPGG--RIVVVGG  233 (271)
T ss_pred             CCHHHHHHHhcCCCCCEEEECCC--C----HHHHHHHHHhcccCC--EEEEEcc
Confidence            110     012356999986421  1    145666777888888  5555543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=92.22  E-value=0.5  Score=40.92  Aligned_cols=71  Identities=10%  Similarity=0.033  Sum_probs=41.8

Q ss_pred             CCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHh
Q 021691          108 DNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDA  180 (309)
Q Consensus       108 ~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~  180 (309)
                      |++++- +--+++++.+-+.. ..-..+-++-|=-||.|.+--.+....+.  ..|+++|+++++++.+++|+..
T Consensus        27 G~p~FP-VRLAsEi~qR~l~~-l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L   99 (246)
T PF11599_consen   27 GFPAFP-VRLASEIFQRALHY-LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL   99 (246)
T ss_dssp             TB-----HHHHHHHHHHHHCT-SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred             CCCCcc-HHHHHHHHHHHHHh-hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence            555554 34444444433322 22223458999999999765555554333  5899999999999999999864

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=92.21  E-value=0.26  Score=45.07  Aligned_cols=79  Identities=15%  Similarity=0.159  Sum_probs=49.0

Q ss_pred             EEeCCCCC-hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC-----CCCCCCCCccEE
Q 021691          139 IELGSGYG-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD-----DFPYIVDTFDVI  212 (309)
Q Consensus       139 LELG~GtG-~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~-----~~~~~~~~fDvI  212 (309)
                      +|+|.|+- +..+.=|.. .....+++|++...++.++.|+..|++..   .+.+....-...     .....+..||++
T Consensus       107 iDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~lss---~ikvV~~~~~ktll~d~~~~~~e~~ydFc  182 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLSS---LIKVVKVEPQKTLLMDALKEESEIIYDFC  182 (419)
T ss_pred             eeccCchhhhHHhhhchh-ccceeeeeeccccccchhhcccccccccc---ceeeEEecchhhcchhhhccCccceeeEE
Confidence            67776653 222221222 23678999999999999999999999853   333333211111     011224569999


Q ss_pred             EEcCCCCCc
Q 021691          213 VASDCTFFK  221 (309)
Q Consensus       213 i~~d~ly~~  221 (309)
                      +|+.++|..
T Consensus       183 McNPPFfe~  191 (419)
T KOG2912|consen  183 MCNPPFFEN  191 (419)
T ss_pred             ecCCchhhc
Confidence            998888754

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=91.95  E-value=1.5  Score=44.77  Aligned_cols=133  Identities=14%  Similarity=0.131  Sum_probs=75.6

Q ss_pred             CeEEEeCCCCChhhHHHHHhc-------C-----CcEEEEEcCCHHHHHHHHHHH--------------Hh-----ccC-
Q 021691          136 KRVIELGSGYGLAGLVIAATT-------E-----ALEVVISDGNPQVVDYIQRNV--------------DA-----NSG-  183 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~-------~-----~~~V~~tD~~~~~l~~~~~n~--------------~~-----n~~-  183 (309)
                      -+|+|+|=|+|+..++..+.+       +     .-+++.++..|-..+.+++..              ..     .++ 
T Consensus        59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~  138 (662)
T PRK01747         59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH  138 (662)
T ss_pred             EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence            589999999998877766444       1     137899997552222222211              11     011 


Q ss_pred             --CCCCCceEEEEeeCCCCC--CCCCCCCccEEEEcCCCC---Cccc-HHHHHHHHHHHHhcCCCeEEEEEeecCCchHH
Q 021691          184 --AFGGTTVKSMTLHWNQDD--FPYIVDTFDVIVASDCTF---FKEF-HKDLARIIKFLLKKVGPSEALFFSPKRGDSLD  255 (309)
Q Consensus       184 --~~~~~~v~~~~l~w~~~~--~~~~~~~fDvIi~~d~ly---~~~~-~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~  255 (309)
                        .+...++.. .+-|++..  .+.....||+++. |.+-   +++. -+.+++.+.+++++++  .+.-++     .-.
T Consensus       139 ~~~~~~~~~~l-~l~~gd~~~~~~~~~~~~d~~~l-D~FsP~~np~~W~~~~~~~l~~~~~~~~--~~~t~t-----~a~  209 (662)
T PRK01747        139 RLLFDDGRVTL-DLWFGDANELLPQLDARADAWFL-DGFAPAKNPDMWSPNLFNALARLARPGA--TLATFT-----SAG  209 (662)
T ss_pred             EEEecCCcEEE-EEEecCHHHHHHhccccccEEEe-CCCCCccChhhccHHHHHHHHHHhCCCC--EEEEee-----hHH
Confidence              001122222 23333321  1223356899987 5332   2221 3679999999999998  333222     224


Q ss_pred             HHHHHHHhCCCeEEEEeccCch
Q 021691          256 KFLEEIEGNHLHFSIIENYNAE  277 (309)
Q Consensus       256 ~f~~~~~~~G~~~~~~~~~~~~  277 (309)
                      .....+.++||.+.....+..+
T Consensus       210 ~vr~~l~~~GF~v~~~~~~g~k  231 (662)
T PRK01747        210 FVRRGLQEAGFTVRKVKGFGRK  231 (662)
T ss_pred             HHHHHHHHcCCeeeecCCCchh
Confidence            5677899999999887766543

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=91.57  E-value=0.34  Score=43.16  Aligned_cols=46  Identities=20%  Similarity=0.284  Sum_probs=33.4

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcC--------CcEEEEEcCCHHHHHHHHHHHHh
Q 021691          135 SKRVIELGSGYGLAGLVIAATTE--------ALEVVISDGNPQVVDYIQRNVDA  180 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~--------~~~V~~tD~~~~~l~~~~~n~~~  180 (309)
                      .-+|+|+|+|.|.++.-+...+.        ..+++.+|.||.+.+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            35999999999988877666543        24899999999887777766544

; PDB: 4F3N_A 1ZKD_B.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=91.46  E-value=1.1  Score=44.12  Aligned_cols=110  Identities=13%  Similarity=-0.014  Sum_probs=70.4

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcC----CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-C--CCC
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTE----ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-F--PYI  205 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~----~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~--~~~  205 (309)
                      .++.+|.|--||+|.+-+..++..+    ...+.|.|.++.....++.|+-.+++..   .+.....+--..+ .  ...
T Consensus       185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~---~~~i~~~dtl~~~~~~~~~~  261 (489)
T COG0286         185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG---DANIRHGDTLSNPKHDDKDD  261 (489)
T ss_pred             CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc---cccccccccccCCcccccCC
Confidence            3556999999999977665555543    2468999999999999999999998842   1111111000001 0  113


Q ss_pred             CCCccEEEEcCCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          206 VDTFDVIVASDCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      ...||+|+++.++...                         ......+..+...|+++|+..+++
T Consensus       262 ~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl  326 (489)
T COG0286         262 KGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL  326 (489)
T ss_pred             ccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence            3679999997766410                         112567788888899888433333

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.36  E-value=0.49  Score=43.31  Aligned_cols=47  Identities=26%  Similarity=0.227  Sum_probs=40.6

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ....+|.+|.=+|.|. |+..+.-|+..|+++++++|+|++=.+.+++
T Consensus       188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~  235 (375)
T KOG0022|consen  188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE  235 (375)
T ss_pred             cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence            3556899999999995 8888888899999999999999988887765

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=91.29  E-value=0.6  Score=44.13  Aligned_cols=109  Identities=17%  Similarity=0.077  Sum_probs=66.0

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee-CCCCCCC-CCC
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH-WNQDDFP-YIV  206 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~-w~~~~~~-~~~  206 (309)
                      ....+|.+||.+|||. |...+.+|+..+..+|+++|.+++.++.++...   +..    .+....-+ |...... ...
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~----vi~~~~~~~~~~~l~~~~~~  252 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAE----TINFEEVDDVVEALRELTGG  252 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcE----EEcCCcchHHHHHHHHHcCC
Confidence            3456789999999987 888888899887667999999999888887641   110    01100000 1000000 112


Q ss_pred             CCccEEEEcCCC---------------CCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          207 DTFDVIVASDCT---------------FFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       207 ~~fDvIi~~d~l---------------y~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..+|+|+-+---               ....+....+..+.++++++|  .++.+.
T Consensus       253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--~iv~~g  306 (386)
T cd08283         253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGG--TVSIIG  306 (386)
T ss_pred             CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCC--EEEEEc
Confidence            358988774210               001223557788889999998  555554

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=91.24  E-value=2.3  Score=38.80  Aligned_cols=129  Identities=13%  Similarity=0.101  Sum_probs=63.7

Q ss_pred             cCCCCeEEEeCCCCChhhHHH-HHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCCCCCc
Q 021691          132 MFRSKRVIELGSGYGLAGLVI-AATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYIVDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~l-a~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~~~~f  209 (309)
                      ..++++||=||||--.-+++. ....+..+++.++.+++..+.++.-++.-+... ...+.+  ..|.... .......+
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~-~~~~~~--~~~~~~~~l~~~~~~a  197 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTV--TDLADQQAFAEALASA  197 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhcc-CceEEE--echhhhhhhhhhcccC
Confidence            357889999999842223332 233577899999998643334433322211100 011222  2332110 11112468


Q ss_pred             cEEEEcCCCCCcccHHH-HHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          210 DVIVASDCTFFKEFHKD-LARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~-ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      |+||.+-++-....... ++.. ...++++.    ++++.........|++.+++.|.++
T Consensus       198 DivINaTp~Gm~~~~~~~~~~~-~~~l~~~~----~v~D~vY~P~~T~ll~~A~~~G~~~  252 (288)
T PRK12749        198 DILTNGTKVGMKPLENESLVND-ISLLHPGL----LVTECVYNPHMTKLLQQAQQAGCKT  252 (288)
T ss_pred             CEEEECCCCCCCCCCCCCCCCc-HHHCCCCC----EEEEecCCCccCHHHHHHHHCCCeE
Confidence            99999776644221111 1100 12344432    3333222222347999999999876

>PF14904 FAM86: Family of unknown function

Probab=91.14  E-value=0.086  Score=39.69  Aligned_cols=40  Identities=5%  Similarity=0.009  Sum_probs=31.6

Q ss_pred             CCCCCCCCchhhHHHHHHHHHhccCCCCCCCchhhhccccccc
Q 021691            4 DNTKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRIS   46 (309)
Q Consensus         4 ~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s   46 (309)
                      |....+||+.+||..+||.+|.+.|+.   ..|+.|+|++.+.
T Consensus        58 Plc~k~Pps~kY~~~FLk~lI~k~Ea~---~~EplDeLYeala   97 (100)
T PF14904_consen   58 PLCVKYPPSVKYRRCFLKELIKKHEAV---HCEPLDELYEALA   97 (100)
T ss_pred             cchhhCCCchhHHHHHHHHHHHHHHHh---cCCcHHHHHHHHH
Confidence            445679999999999999999999865   3345677777665

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=91.14  E-value=1.8  Score=37.08  Aligned_cols=134  Identities=15%  Similarity=0.035  Sum_probs=70.3

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCc-EEEEEcCCH----------HHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEAL-EVVISDGNP----------QVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~-~V~~tD~~~----------~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      .+.+|.+|+|+--|.|..+..++...++. .|++.=.++          .+-...++....|.-.++...+   .+.--+
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~---A~~~pq  121 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLV---ALGAPQ  121 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccc---ccCCCC
Confidence            45689999999999999998888876653 455443222          1111222222223221111111   000000


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----C---------chHHHHHHHHHhCCC
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----G---------DSLDKFLEEIEGNHL  266 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----~---------~~~~~f~~~~~~~G~  266 (309)
                      ...-....++|.++-+-.++ ..........+.+.|||||  ..++..+.-    +         -......+..+..||
T Consensus       122 ~~d~~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGG--v~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGF  198 (238)
T COG4798         122 KLDLVPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGG--VYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGF  198 (238)
T ss_pred             cccccccchhhhhhhccccC-cchHHHHHHHHHHhcCCCc--EEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcc
Confidence            00000112333333322222 5667788899999999999  555554321    1         112345677888999


Q ss_pred             eEEE
Q 021691          267 HFSI  270 (309)
Q Consensus       267 ~~~~  270 (309)
                      ..+-
T Consensus       199 kl~a  202 (238)
T COG4798         199 KLEA  202 (238)
T ss_pred             eeee
Confidence            8764

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=90.61  E-value=0.61  Score=41.82  Aligned_cols=43  Identities=16%  Similarity=0.132  Sum_probs=33.5

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-----CCcEEEEEcCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATT-----EALEVVISDGN  167 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-----~~~~V~~tD~~  167 (309)
                      .+.+..-+.++..++|+|||.|.++..++...     +...++++|..
T Consensus         9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~   56 (259)
T PF05206_consen    9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA   56 (259)
T ss_pred             HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence            34444344566799999999999999999887     45689999974

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=90.56  E-value=0.7  Score=42.78  Aligned_cols=49  Identities=24%  Similarity=0.333  Sum_probs=42.7

Q ss_pred             hCcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          128 SHADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ......+|.+|.=+||| .|+..+.-|+..++.+++++|++++-++.+++
T Consensus       179 nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~  228 (366)
T COG1062         179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK  228 (366)
T ss_pred             hcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence            33456789999999998 59999999999999999999999998888875

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.49  E-value=6.8  Score=35.57  Aligned_cols=121  Identities=15%  Similarity=0.006  Sum_probs=64.8

Q ss_pred             CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .++++|+=||||- |......+...+..+|+.+|.+++-.+.+.+.+.....     .+.+  ..|.+.  ......+|+
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~-----~~~~--~~~~~~--~~~~~~aDi  195 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFP-----AARA--TAGSDL--AAALAAADG  195 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCC-----CeEE--Eeccch--HhhhCCCCE
Confidence            4678999999984 54444434445777999999997666555544432211     1122  222211  111245899


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      ||.+-++........-+.  ...++++.    ++++.......-.|++.+++.|.++
T Consensus       196 VInaTp~Gm~~~~~~~~~--~~~l~~~~----~v~DivY~P~~T~ll~~A~~~G~~~  246 (284)
T PRK12549        196 LVHATPTGMAKHPGLPLP--AELLRPGL----WVADIVYFPLETELLRAARALGCRT  246 (284)
T ss_pred             EEECCcCCCCCCCCCCCC--HHHcCCCc----EEEEeeeCCCCCHHHHHHHHCCCeE
Confidence            999765543211100011  13455443    2333221112247999999999875

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.48  E-value=3.2  Score=38.56  Aligned_cols=96  Identities=22%  Similarity=0.261  Sum_probs=57.5

Q ss_pred             cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcC---CHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691          132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDG---NPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD  207 (309)
Q Consensus       132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~---~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~  207 (309)
                      ..+|.+||=.|+|. |.+.+.+|+..++ +|++++.   +++-++.+++    .+..    .+....-++..   .....
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~----~v~~~~~~~~~---~~~~~  237 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT----YVNSSKTPVAE---VKLVG  237 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE----EecCCccchhh---hhhcC
Confidence            34788999999984 8888888888766 7999986   5655555442    2321    01100001110   01124


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+|+|+-+  .-    ....+....++++++|  .++++.
T Consensus       238 ~~d~vid~--~g----~~~~~~~~~~~l~~~G--~~v~~G  269 (355)
T cd08230         238 EFDLIIEA--TG----VPPLAFEALPALAPNG--VVILFG  269 (355)
T ss_pred             CCCEEEEC--cC----CHHHHHHHHHHccCCc--EEEEEe
Confidence            68988764  21    1346677888899999  555544

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=90.45  E-value=4.8  Score=36.49  Aligned_cols=122  Identities=11%  Similarity=0.057  Sum_probs=63.0

Q ss_pred             CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .++++||=||||- |......+...+..+|+.++.+++-.+.+...+....      .+  ..+.+.. +.......+|+
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~------~~--~~~~~~~-~~~~~~~~~Di  193 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG------VI--TRLEGDS-GGLAIEKAAEV  193 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC------cc--eeccchh-hhhhcccCCCE
Confidence            5689999999984 5444443444677899999998754444433322111      11  1122111 11112256899


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHH-----HhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          212 IVASDCTFFKEFHKDLARIIKFL-----LKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~l-----Lk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      ||.+-++-.......+ ......     +.+.    .++++.........|++.+++.|..+
T Consensus       194 VInaTp~g~~~~~~~l-~~~~~~~~~~~~~~~----~~v~D~vY~P~~T~ll~~A~~~G~~~  250 (282)
T TIGR01809       194 LVSTVPADVPADYVDL-FATVPFLLLKRKSSE----GIFLDAAYDPWPTPLVAIVSAAGWRV  250 (282)
T ss_pred             EEECCCCCCCCCHHHh-hhhhhhhccccCCCC----cEEEEEeeCCCCCHHHHHHHHCCCEE
Confidence            9998666543332221 111111     1122    22333222222257999999999776

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=90.38  E-value=1.3  Score=40.32  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=59.6

Q ss_pred             CcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          131 DMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      .+.++.+||-.|+| .|...+.+|+..+ .+|++++.+++..+.+++    .+..   ..+......+...........+
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~  233 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAGLGGGF  233 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHhcCCCc
Confidence            45678899998887 3777777788765 469999999988777754    2221   0000000000000001123468


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |+|+.+  ..    ....+....+.|+++|  .++.+.
T Consensus       234 D~vid~--~g----~~~~~~~~~~~l~~~G--~~v~~g  263 (338)
T cd08254         234 DVIFDF--VG----TQPTFEDAQKAVKPGG--RIVVVG  263 (338)
T ss_pred             eEEEEC--CC----CHHHHHHHHHHhhcCC--EEEEEC
Confidence            988753  21    1356777889999999  555543

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK13699 putative methylase; Provisional

Probab=90.38  E-value=1.4  Score=38.61  Aligned_cols=61  Identities=16%  Similarity=0.192  Sum_probs=41.5

Q ss_pred             CCCCccEEEEcCCCCCc----------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          205 IVDTFDVIVASDCTFFK----------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~----------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      +++++|+|+. |+.|..                +.....+.++.++||++|  .++++...+  ....+...+++.||.+
T Consensus        17 pd~SVDLIiT-DPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg--~l~if~~~~--~~~~~~~al~~~GF~l   91 (227)
T PRK13699         17 PDNAVDFILT-DPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDA--LMVSFYGWN--RVDRFMAAWKNAGFSV   91 (227)
T ss_pred             CccccceEEe-CCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCC--EEEEEeccc--cHHHHHHHHHHCCCEE
Confidence            4567899988 666642                224567889999999987  454444333  2356778888999986


Q ss_pred             EE
Q 021691          269 SI  270 (309)
Q Consensus       269 ~~  270 (309)
                      ..
T Consensus        92 ~~   93 (227)
T PRK13699         92 VG   93 (227)
T ss_pred             ee
Confidence            53

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.00  E-value=1.6  Score=43.05  Aligned_cols=121  Identities=18%  Similarity=0.174  Sum_probs=70.6

Q ss_pred             CCceeecccHHHHHHHHhhC---cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691          110 TGLVCHWPSEDVLAFFSLSH---ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF  185 (309)
Q Consensus       110 tG~~~~W~sa~~La~~l~~~---~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~  185 (309)
                      .|.+.+-+++..+.+++--.   ....++.+|+=+|+|. |+..+.+++..|+ .|+++|.+++.++.++. +   +.. 
T Consensus       136 AGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~-l---Ga~-  209 (511)
T TIGR00561       136 AGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS-M---GAE-  209 (511)
T ss_pred             HHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c---CCe-
Confidence            34444555556666554211   1234678999999995 8988888888765 69999999987776664 1   221 


Q ss_pred             CCCceEEEEeeCC----------CCC--------CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          186 GGTTVKSMTLHWN----------QDD--------FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       186 ~~~~v~~~~l~w~----------~~~--------~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                         .+.+...+-+          ..+        .......+|+|+..-.+-....+.-+.+...+.+|+|+
T Consensus       210 ---~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGs  278 (511)
T TIGR00561       210 ---FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGS  278 (511)
T ss_pred             ---EEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCC
Confidence               0111100000          000        01112469999886544333333346677788888887

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=89.82  E-value=0.48  Score=36.41  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcC
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDG  166 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~  166 (309)
                      .....|||||.|++--.|.+.  +..=.++|.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             CCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            346899999999988877665  667788884

; GO: 0008168 methyltransferase activity

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=89.73  E-value=2.7  Score=38.22  Aligned_cols=125  Identities=15%  Similarity=0.155  Sum_probs=62.7

Q ss_pred             cCCCCeEEEeCCCCChhhHHHH---HhcCCcEEEEEcCCHH---HHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIA---ATTEALEVVISDGNPQ---VVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPY  204 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la---~~~~~~~V~~tD~~~~---~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~  204 (309)
                      ...+++||=+|+| |.. .+++   ...|..+|+.++.+++   -.+.+.+.+....     ..+.+...+|.... ...
T Consensus       123 ~~~~k~vlI~GAG-Gag-rAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~-----~~~~~~~~d~~~~~~~~~  195 (289)
T PRK12548        123 DVKGKKLTVIGAG-GAA-TAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV-----PECIVNVYDLNDTEKLKA  195 (289)
T ss_pred             CcCCCEEEEECCc-HHH-HHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC-----CCceeEEechhhhhHHHh
Confidence            3568899999997 422 2222   2346667999999863   3333333332211     12233344554321 111


Q ss_pred             CCCCccEEEEcCCCCCcccHHH-HHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          205 IVDTFDVIVASDCTFFKEFHKD-LARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~~~~-ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      .-..+|+||.+-++-..+..+. .+.. ...|.++.    ++++.......-.|++.+++.|.++
T Consensus       196 ~~~~~DilINaTp~Gm~~~~~~~~~~~-~~~l~~~~----~v~D~vY~P~~T~ll~~A~~~G~~~  255 (289)
T PRK12548        196 EIASSDILVNATLVGMKPNDGETNIKD-TSVFRKDL----VVADTVYNPKKTKLLEDAEAAGCKT  255 (289)
T ss_pred             hhccCCEEEEeCCCCCCCCCCCCCCCc-HHhcCCCC----EEEEecCCCCCCHHHHHHHHCCCee
Confidence            1235799998776654221110 1100 13454443    2333222112257999999999865

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=89.35  E-value=1.5  Score=40.57  Aligned_cols=46  Identities=28%  Similarity=0.307  Sum_probs=36.4

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQ  175 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~  175 (309)
                      ....+|.+||=+|+|. |...+.+|+..+...|+++|.+++-++.++
T Consensus       156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~  202 (347)
T PRK10309        156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK  202 (347)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence            3455788999999875 888888888887766899999888777664

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=89.26  E-value=3.7  Score=37.64  Aligned_cols=98  Identities=17%  Similarity=0.166  Sum_probs=57.0

Q ss_pred             CCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          133 FRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       133 ~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .+|.+||-.|+|. |...+.+|+..+..+|++++.+++..+.+++ .   +..   .-+.....++.  ........+|+
T Consensus       164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~---g~~---~vi~~~~~~~~--~~~~~~~~vd~  234 (339)
T cd08232         164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-M---GAD---ETVNLARDPLA--AYAADKGDFDV  234 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCC---EEEcCCchhhh--hhhccCCCccE
Confidence            3789999988874 6666677777765589999988887775543 1   211   00000000000  01111235899


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |+.+--      -...+..+.+.|+++|  .++.+.
T Consensus       235 vld~~g------~~~~~~~~~~~L~~~G--~~v~~g  262 (339)
T cd08232         235 VFEASG------APAALASALRVVRPGG--TVVQVG  262 (339)
T ss_pred             EEECCC------CHHHHHHHHHHHhcCC--EEEEEe
Confidence            987411      1245677788889998  555443

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=89.15  E-value=0.41  Score=42.41  Aligned_cols=57  Identities=21%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA  180 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~  180 (309)
                      |+.++.+........+++|+-||+|.+++.+..  .+.+|++-|+++..+...+.-++.
T Consensus         8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~~~l~~   64 (260)
T PF02086_consen    8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWKAVLKN   64 (260)
T ss_dssp             GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHHHHHhc
Confidence            555665543222678999999999999988654  477999999999888777644443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=89.10  E-value=0.36  Score=44.30  Aligned_cols=49  Identities=10%  Similarity=0.079  Sum_probs=37.6

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHH
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVD  179 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~  179 (309)
                      ...++..++|.=-|.|..+..+.+.++..+|++.|.++++++.+++++.
T Consensus        17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~   65 (310)
T PF01795_consen   17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK   65 (310)
T ss_dssp             T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred             CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence            3556789999999999999999988888999999999999999987765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=88.80  E-value=6.2  Score=37.49  Aligned_cols=18  Identities=22%  Similarity=0.370  Sum_probs=15.1

Q ss_pred             CCeEEEeCCCCChhhHHH
Q 021691          135 SKRVIELGSGYGLAGLVI  152 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~l  152 (309)
                      ..+|+|+|||+|..++.+
T Consensus        64 ~~~iaDlGcs~G~ntl~~   81 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHI   81 (386)
T ss_pred             ceeEEEecCCCCccHHHH
Confidence            568999999999887654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=88.65  E-value=1.6  Score=39.22  Aligned_cols=101  Identities=20%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ...+|.+||=.|+|. |...+.+|+..+..+|+++|.+++-++.+++    .+..   .-+..... ............+
T Consensus       117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~-~~~~~~~~~~~g~  188 (280)
T TIGR03366       117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT---ALAEPEVL-AERQGGLQNGRGV  188 (280)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---EecCchhh-HHHHHHHhCCCCC
Confidence            344789999999984 8888888888877679999988877666654    2221   00000000 0000000012358


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |+|+-+  .-    ....++...++++++|  .++.+.
T Consensus       189 d~vid~--~G----~~~~~~~~~~~l~~~G--~iv~~G  218 (280)
T TIGR03366       189 DVALEF--SG----ATAAVRACLESLDVGG--TAVLAG  218 (280)
T ss_pred             CEEEEC--CC----ChHHHHHHHHHhcCCC--EEEEec
Confidence            988763  11    2346677788899999  565555

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=88.43  E-value=15  Score=32.62  Aligned_cols=128  Identities=16%  Similarity=0.128  Sum_probs=70.1

Q ss_pred             CCCceeecccHH-HHHHHHhh---CcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691          109 NTGLVCHWPSED-VLAFFSLS---HADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSG  183 (309)
Q Consensus       109 ~tG~~~~W~sa~-~La~~l~~---~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~  183 (309)
                      ..=++ +|..-. .||.-++-   +.++.+|.+||=||+++|..--.++...+ ..-|++++.++..=..+- |+...  
T Consensus       128 kvEyR-VWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~-nmAkk--  203 (317)
T KOG1596|consen  128 KVEYR-VWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI-NMAKK--  203 (317)
T ss_pred             cEEEE-EeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH-HHhhc--
Confidence            34445 898743 36666653   56778999999999999965444444443 356899998764332221 11110  


Q ss_pred             CCCCCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          184 AFGGTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       184 ~~~~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                         +.+|....-|-..+. ...+-+..|+|++ |+.. ++....+.-..+.+|+++|...+-+
T Consensus       204 ---RtNiiPIiEDArhP~KYRmlVgmVDvIFa-Dvaq-pdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  204 ---RTNIIPIIEDARHPAKYRMLVGMVDVIFA-DVAQ-PDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             ---cCCceeeeccCCCchheeeeeeeEEEEec-cCCC-chhhhhhhhhhhhhhccCCeEEEEE
Confidence               122211111111110 0112345788877 6544 3334455567788999999544333

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=88.42  E-value=5.8  Score=35.10  Aligned_cols=98  Identities=21%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             CcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691          129 HADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD  207 (309)
Q Consensus       129 ~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~  207 (309)
                      .....+|.+||=.|+|. |...+.+|+..+..+|++++.+++-.+.+++.    +..   ..+    .......  ....
T Consensus        92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~---~~~----~~~~~~~--~~~~  158 (277)
T cd08255          92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA---DPV----AADTADE--IGGR  158 (277)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC---ccc----cccchhh--hcCC
Confidence            34556788999998874 77777778877765599999988877655542    210   000    0000000  1124


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+|+|+-.  ...    ...+....+.++++|  .++.+.
T Consensus       159 ~~d~vl~~--~~~----~~~~~~~~~~l~~~g--~~~~~g  190 (277)
T cd08255         159 GADVVIEA--SGS----PSALETALRLLRDRG--RVVLVG  190 (277)
T ss_pred             CCCEEEEc--cCC----hHHHHHHHHHhcCCc--EEEEEe
Confidence            58988852  111    345677778888888  455443

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=88.26  E-value=1.9  Score=39.28  Aligned_cols=62  Identities=15%  Similarity=0.025  Sum_probs=49.5

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhcc
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANS  182 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~  182 (309)
                      +|.+-+.......++...+|.=-|.|..+.++.+.++. ++++++|.+|.+++.+++....++
T Consensus        10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~   72 (314)
T COG0275          10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD   72 (314)
T ss_pred             hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence            45555555556667789999988999999888888764 569999999999999999886644

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=87.90  E-value=1.4  Score=35.74  Aligned_cols=44  Identities=18%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             EeCCCCC--hhhHHHH--HhcCCcEEEEEcCCHHHHHHHHHH--HHhccC
Q 021691          140 ELGSGYG--LAGLVIA--ATTEALEVVISDGNPQVVDYIQRN--VDANSG  183 (309)
Q Consensus       140 ELG~GtG--~~~l~la--~~~~~~~V~~tD~~~~~l~~~~~n--~~~n~~  183 (309)
                      |+||+.|  ......+  ...+..+|+++|.+|..++.+++|  +..|..
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~   50 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK   50 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence            8999999  4433332  344567899999999999999999  777643

; PDB: 2PY6_A.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=87.23  E-value=11  Score=34.61  Aligned_cols=65  Identities=15%  Similarity=0.094  Sum_probs=43.9

Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-----cC----------CchHHHHHHHHHhCCCeEEEE
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-----KR----------GDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-----~r----------~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      +.||+|+-+--+--...+-..++++..+|+|||  .-+=+.|     ..          .-+.+.....++..||.+...
T Consensus       258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GG--vWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke  335 (369)
T KOG2798|consen  258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGG--VWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKE  335 (369)
T ss_pred             CccceEEEEEEeechHHHHHHHHHHHHhccCCc--EEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence            469999886332234567778899999999999  2222221     11          235677888888999998765


Q ss_pred             ec
Q 021691          272 EN  273 (309)
Q Consensus       272 ~~  273 (309)
                      +.
T Consensus       336 ~~  337 (369)
T KOG2798|consen  336 RG  337 (369)
T ss_pred             ee
Confidence            53

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=87.22  E-value=10  Score=32.96  Aligned_cols=113  Identities=18%  Similarity=0.112  Sum_probs=60.4

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCC----hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYG----LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG----~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ++|+.....-..-+.++|..|+.|    .++++.|++.-+++++++-.+++.+...++.+...+..   ..+.+...   
T Consensus        30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~---~~vEfvvg---  103 (218)
T PF07279_consen   30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS---DVVEFVVG---  103 (218)
T ss_pred             HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc---ccceEEec---
Confidence            344433333334578999977643    34455555544568888888888777777777665552   22333322   


Q ss_pred             CCC--CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          199 QDD--FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       199 ~~~--~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +..  .-..-...|+++. ||=     .+.....+.++++.+.+..+++..
T Consensus       104 ~~~e~~~~~~~~iDF~vV-Dc~-----~~d~~~~vl~~~~~~~~GaVVV~~  148 (218)
T PF07279_consen  104 EAPEEVMPGLKGIDFVVV-DCK-----REDFAARVLRAAKLSPRGAVVVCY  148 (218)
T ss_pred             CCHHHHHhhccCCCEEEE-eCC-----chhHHHHHHHHhccCCCceEEEEe
Confidence            211  1111246888887 553     333443444455544333444443

The function of this family is unknown.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=87.14  E-value=9.1  Score=31.77  Aligned_cols=112  Identities=20%  Similarity=0.272  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      +..|++.+....  ..+.+|+=|||=+-...+.- ...+..++++.|++...        ...+-     + .+...|..
T Consensus        12 ~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~~~-----~-~F~fyD~~   74 (162)
T PF10237_consen   12 AEFLARELLDGA--LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQFGG-----D-EFVFYDYN   74 (162)
T ss_pred             HHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------HhcCC-----c-ceEECCCC
Confidence            455677666532  24579999999765555442 12356789999998643        11111     1 23345544


Q ss_pred             CCCC--CCCCCCccEEEEcCCCCC-cccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          199 QDDF--PYIVDTFDVIVASDCTFF-KEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       199 ~~~~--~~~~~~fDvIi~~d~ly~-~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      .+..  ....++||+|++ |+.|- .+.......+++.++++++  .+++++...
T Consensus        75 ~p~~~~~~l~~~~d~vv~-DPPFl~~ec~~k~a~ti~~L~k~~~--kii~~Tg~~  126 (162)
T PF10237_consen   75 EPEELPEELKGKFDVVVI-DPPFLSEECLTKTAETIRLLLKPGG--KIILCTGEE  126 (162)
T ss_pred             ChhhhhhhcCCCceEEEE-CCCCCCHHHHHHHHHHHHHHhCccc--eEEEecHHH
Confidence            3321  123579999999 55554 5555677788888888876  666666543

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=87.08  E-value=8.2  Score=36.63  Aligned_cols=109  Identities=16%  Similarity=0.123  Sum_probs=68.1

Q ss_pred             ecccHHH-HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          115 HWPSEDV-LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       115 ~W~sa~~-La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      -|+|+.. |-+++....  ..+ +|+=++=.-|.++..++.. +.  ...+| +--.-..++.|++.|++..  ..++. 
T Consensus        27 awdaade~ll~~~~~~~--~~~-~~~i~nd~fGal~~~l~~~-~~--~~~~d-s~~~~~~~~~n~~~n~~~~--~~~~~-   96 (378)
T PRK15001         27 AWEAADEYLLQQLDDTE--IRG-PVLILNDAFGALSCALAEH-KP--YSIGD-SYISELATRENLRLNGIDE--SSVKF-   96 (378)
T ss_pred             ccccHHHHHHHHHhhcc--cCC-CEEEEcCchhHHHHHHHhC-CC--Ceeeh-HHHHHHHHHHHHHHcCCCc--cccee-
Confidence            8999765 455554421  123 7999999999999988753 22  23356 4444556788999998742  11222 


Q ss_pred             EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          194 TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       194 ~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                       ++    ..+.+...+|+|+. -+.-.....+..+..+...+.+++
T Consensus        97 -~~----~~~~~~~~~d~vl~-~~PK~~~~l~~~l~~l~~~l~~~~  136 (378)
T PRK15001         97 -LD----STADYPQQPGVVLI-KVPKTLALLEQQLRALRKVVTSDT  136 (378)
T ss_pred             -ec----ccccccCCCCEEEE-EeCCCHHHHHHHHHHHHhhCCCCC
Confidence             21    11223456999988 233334456667778888888888

>cd08293 PTGR2 Prostaglandin reductase

Probab=87.03  E-value=2.5  Score=38.81  Aligned_cols=101  Identities=10%  Similarity=0.060  Sum_probs=57.0

Q ss_pred             cCCC--CeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691          132 MFRS--KRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD  207 (309)
Q Consensus       132 ~~~g--~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~  207 (309)
                      ..+|  .+||=.|+ | .|...+.+|+..|+.+|++++.+++-.+.+++.+   +..   .-+.....+|...-......
T Consensus       150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~i~~~~~~  223 (345)
T cd08293         150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD---AAINYKTDNVAERLRELCPE  223 (345)
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc---EEEECCCCCHHHHHHHHCCC
Confidence            4444  89998886 4 5888888888877658999998887666665432   221   00110000110000001124


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+|+|+-+  +-.     ..+....+.|+++|  .++.+.
T Consensus       224 gvd~vid~--~g~-----~~~~~~~~~l~~~G--~iv~~G  254 (345)
T cd08293         224 GVDVYFDN--VGG-----EISDTVISQMNENS--HIILCG  254 (345)
T ss_pred             CceEEEEC--CCc-----HHHHHHHHHhccCC--EEEEEe
Confidence            68999853  221     12466778899999  455443

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=87.02  E-value=1.8  Score=34.60  Aligned_cols=79  Identities=15%  Similarity=0.249  Sum_probs=47.7

Q ss_pred             cCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...+++||=+|+| +|..........+..+|+.+..+.+-.+.+.+.+  .+     ..+.+.  .|.+.  ......+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--~~-----~~~~~~--~~~~~--~~~~~~~D   77 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--GG-----VNIEAI--PLEDL--EEALQEAD   77 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--TG-----CSEEEE--EGGGH--CHHHHTES
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--Cc-----ccccee--eHHHH--HHHHhhCC
Confidence            4679999999998 3544443334457788999999977666555554  11     123333  33221  11235799


Q ss_pred             EEEEcCCCCCc
Q 021691          211 VIVASDCTFFK  221 (309)
Q Consensus       211 vIi~~d~ly~~  221 (309)
                      +|+.+-..-..
T Consensus        78 ivI~aT~~~~~   88 (135)
T PF01488_consen   78 IVINATPSGMP   88 (135)
T ss_dssp             EEEE-SSTTST
T ss_pred             eEEEecCCCCc
Confidence            99997655443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=86.82  E-value=12  Score=32.62  Aligned_cols=80  Identities=14%  Similarity=0.265  Sum_probs=48.0

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--------  202 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--------  202 (309)
                      +.|++||=.|+ +|.+|..+++.+  .+.+|++++.+++.++.+...+...+     .++.....|..+...        
T Consensus         8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-----~~~~~~~~D~~~~~~~~~~~~~~   81 (255)
T PRK07523          8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-----LSAHALAFDVTDHDAVRAAIDAF   81 (255)
T ss_pred             CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-----ceEEEEEccCCCHHHHHHHHHHH
Confidence            46889998886 555566655543  25689999998877766655554432     234444455443221        


Q ss_pred             CCCCCCccEEEEcCCC
Q 021691          203 PYIVDTFDVIVASDCT  218 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~l  218 (309)
                      ....+..|+|+.+...
T Consensus        82 ~~~~~~~d~li~~ag~   97 (255)
T PRK07523         82 EAEIGPIDILVNNAGM   97 (255)
T ss_pred             HHhcCCCCEEEECCCC
Confidence            0012467988886644

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=86.74  E-value=3.3  Score=38.53  Aligned_cols=102  Identities=16%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             cCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe-eCCCCCCCCCC
Q 021691          130 ADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL-HWNQDDFPYIV  206 (309)
Q Consensus       130 ~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l-~w~~~~~~~~~  206 (309)
                      ....+|.+||=.|+ | .|...+.+|+..|. +|++++.+++-.+.+++.   .+..   .-+....- ++.........
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~~  226 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYFP  226 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHCC
Confidence            35567899999998 4 58888888888764 799999888766666432   2221   00110000 01000000012


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..+|+|+-  ++-     ...+....++++++|  .++++.
T Consensus       227 ~gvD~v~d--~vG-----~~~~~~~~~~l~~~G--~iv~~G  258 (348)
T PLN03154        227 EGIDIYFD--NVG-----GDMLDAALLNMKIHG--RIAVCG  258 (348)
T ss_pred             CCcEEEEE--CCC-----HHHHHHHHHHhccCC--EEEEEC
Confidence            35898875  322     235677788899999  455443

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=86.57  E-value=1.6  Score=34.58  Aligned_cols=44  Identities=18%  Similarity=0.346  Sum_probs=28.5

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHH
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQ  169 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~  169 (309)
                      .+|+|+..+.   ...+|.|+|-|. --++..|++.  +..|++||+++.
T Consensus         3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~   47 (127)
T PF03686_consen    3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR   47 (127)
T ss_dssp             HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S
T ss_pred             hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc
Confidence            4677877543   334999999996 5666666665  479999999986

; PDB: 2K4M_A.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=86.03  E-value=5  Score=36.24  Aligned_cols=119  Identities=13%  Similarity=0.122  Sum_probs=63.0

Q ss_pred             cCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...+++||=+|+| .|..........+..+|+.++.+++-.+.+.+.+....      .+..   ++   ........+|
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~------~~~~---~~---~~~~~~~~~D  187 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG------KAEL---DL---ELQEELADFD  187 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc------ceee---cc---cchhccccCC
Confidence            3568899999997 24333322233455799999999876666555443211      1111   11   1111225689


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-cCCchHHHHHHHHHhCCCeE
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-KRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-~r~~~~~~f~~~~~~~G~~~  268 (309)
                      +||.+-+.-.....+. .......++++.    ++++. +++ ....|++.+++.|..+
T Consensus       188 ivInaTp~g~~~~~~~-~~~~~~~l~~~~----~v~DivY~P-~~T~ll~~A~~~G~~~  240 (278)
T PRK00258        188 LIINATSAGMSGELPL-PPLPLSLLRPGT----IVYDMIYGP-LPTPFLAWAKAQGART  240 (278)
T ss_pred             EEEECCcCCCCCCCCC-CCCCHHHcCCCC----EEEEeecCC-CCCHHHHHHHHCcCee
Confidence            9999766543221100 000113344433    23332 232 2247999999999866

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=85.24  E-value=3.1  Score=38.19  Aligned_cols=99  Identities=19%  Similarity=0.234  Sum_probs=59.4

Q ss_pred             CcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC----C
Q 021691          129 HADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF----P  203 (309)
Q Consensus       129 ~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~----~  203 (309)
                      .....+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-.+.+++.    +..    .+    ++......    .
T Consensus       158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~----~~----i~~~~~~~~~~~~  225 (339)
T cd08239         158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD----FV----INSGQDDVQEIRE  225 (339)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC----EE----EcCCcchHHHHHH
Confidence            34556799999999874 77777788888776699999988776666432    221    00    11111000    0


Q ss_pred             -CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          204 -YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       204 -~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                       .....+|+|+-+  .-.    ...+....++|+++|  .++++.
T Consensus       226 ~~~~~~~d~vid~--~g~----~~~~~~~~~~l~~~G--~~v~~g  262 (339)
T cd08239         226 LTSGAGADVAIEC--SGN----TAARRLALEAVRPWG--RLVLVG  262 (339)
T ss_pred             HhCCCCCCEEEEC--CCC----HHHHHHHHHHhhcCC--EEEEEc
Confidence             112368998853  211    334556667889998  555544

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=85.22  E-value=3  Score=40.26  Aligned_cols=88  Identities=17%  Similarity=0.277  Sum_probs=53.8

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVD  207 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~  207 (309)
                      ..++...++|+|+|+|.-+-++-...+.  ..++.||.+..|+.....+... +..++.  +-+..+.......+ ....
T Consensus       197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~--~~v~~~~~~r~~~pi~~~~  273 (491)
T KOG2539|consen  197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGE--PIVRKLVFHRQRLPIDIKN  273 (491)
T ss_pred             cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCc--hhccccchhcccCCCCccc
Confidence            4456678999999987655544444443  5799999999999988887754 221111  11111111111122 2245


Q ss_pred             CccEEEEcCCCCCc
Q 021691          208 TFDVIVASDCTFFK  221 (309)
Q Consensus       208 ~fDvIi~~d~ly~~  221 (309)
                      .||+|+++..+++.
T Consensus       274 ~yDlvi~ah~l~~~  287 (491)
T KOG2539|consen  274 GYDLVICAHKLHEL  287 (491)
T ss_pred             ceeeEEeeeeeecc
Confidence            69999999988774

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=85.07  E-value=1.8  Score=37.19  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=25.0

Q ss_pred             CCCCeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCH
Q 021691          133 FRSKRVIELGSGY-GLA-GLVIAATTEALEVVISDGNP  168 (309)
Q Consensus       133 ~~g~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~  168 (309)
                      ..+++||=+|||. |.. ...|+ ..|..+++.+|.+.
T Consensus        19 l~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDH   55 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCE
Confidence            4578999999984 543 34444 45778999999773

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=84.89  E-value=15  Score=31.97  Aligned_cols=80  Identities=15%  Similarity=0.258  Sum_probs=48.5

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------  203 (309)
                      +.|++||=.|++.| +|..+++.+  .+.+|++++.+++.++.+...++..+.     ++.....|..+...-       
T Consensus         9 ~~~k~ilItGas~~-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~~~~~~~~~~~~   82 (256)
T PRK06124          9 LAGQVALVTGSARG-LGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-----AAEALAFDIADEEAVAAAFARI   82 (256)
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEccCCCHHHHHHHHHHH
Confidence            57899998886544 455444432  256999999998777766665554332     345556665543210       


Q ss_pred             -CCCCCccEEEEcCCC
Q 021691          204 -YIVDTFDVIVASDCT  218 (309)
Q Consensus       204 -~~~~~fDvIi~~d~l  218 (309)
                       ...+++|+|+.+-..
T Consensus        83 ~~~~~~id~vi~~ag~   98 (256)
T PRK06124         83 DAEHGRLDILVNNVGA   98 (256)
T ss_pred             HHhcCCCCEEEECCCC
Confidence             012467998876543

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=84.86  E-value=36  Score=34.22  Aligned_cols=86  Identities=10%  Similarity=0.037  Sum_probs=49.8

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCC----CCCceEEEEeeCCCCCC-
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAF----GGTTVKSMTLHWNQDDF-  202 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~----~~~~v~~~~l~w~~~~~-  202 (309)
                      .+...|++||=.|+. |.+|..+++.+  .+.+|++++.+.+-++.+...+....+..    ...++.+...|..+.+. 
T Consensus        75 ~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI  153 (576)
T PLN03209         75 LDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI  153 (576)
T ss_pred             cccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence            456678899988874 55666655443  35689999998877666555443322110    01235566666554321 


Q ss_pred             CCCCCCccEEEEcC
Q 021691          203 PYIVDTFDVIVASD  216 (309)
Q Consensus       203 ~~~~~~fDvIi~~d  216 (309)
                      ...-+..|+||.+-
T Consensus       154 ~~aLggiDiVVn~A  167 (576)
T PLN03209        154 GPALGNASVVICCI  167 (576)
T ss_pred             HHHhcCCCEEEEcc
Confidence            11124689888754

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=84.81  E-value=3.4  Score=38.13  Aligned_cols=99  Identities=13%  Similarity=0.165  Sum_probs=56.8

Q ss_pred             CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          134 RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      +|.+||=.|+|. |...+.+|+..+..+|++++.+++-.+.+++    .+..   .-+.....++.........+.+|+|
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d~v  247 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVDAV  247 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCcEE
Confidence            678999998874 7777778888877789999988877666643    1221   0000000011000000111268998


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +.+  .-    ....+....+.|+++|  .++.+.
T Consensus       248 id~--~g----~~~~~~~~~~~l~~~g--~~v~~g  274 (350)
T cd08240         248 IDF--VN----NSATASLAFDILAKGG--KLVLVG  274 (350)
T ss_pred             EEC--CC----CHHHHHHHHHHhhcCC--eEEEEC
Confidence            863  11    1345777788888888  454443

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=84.56  E-value=15  Score=33.42  Aligned_cols=99  Identities=16%  Similarity=0.195  Sum_probs=59.0

Q ss_pred             CcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC----CC
Q 021691          129 HADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD----FP  203 (309)
Q Consensus       129 ~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~----~~  203 (309)
                      .....+|.+||-.|+| .|...+.+|+..+...|++++.+++..+.+++.    +..      .+  ++-....    ..
T Consensus       154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~------~~--~~~~~~~~~~~~~  221 (334)
T cd08234         154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT------ET--VDPSREDPEAQKE  221 (334)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe------EE--ecCCCCCHHHHHH
Confidence            3455678899999876 366666777776655589999888877766432    221      00  1100110    01


Q ss_pred             CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .....+|+|+.+  ..    ....+....+.|+++|  .++.+.
T Consensus       222 ~~~~~vd~v~~~--~~----~~~~~~~~~~~l~~~G--~~v~~g  257 (334)
T cd08234         222 DNPYGFDVVIEA--TG----VPKTLEQAIEYARRGG--TVLVFG  257 (334)
T ss_pred             hcCCCCcEEEEC--CC----ChHHHHHHHHHHhcCC--EEEEEe
Confidence            123568999863  11    1356677778888988  455443

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PLN02740 Alcohol dehydrogenase-like

Probab=84.54  E-value=2.2  Score=40.16  Aligned_cols=47  Identities=26%  Similarity=0.211  Sum_probs=38.3

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ....+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-++.+++
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            3566789999999984 8888888888877689999999887777754

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=84.53  E-value=3.3  Score=38.35  Aligned_cols=46  Identities=26%  Similarity=0.315  Sum_probs=36.9

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ....+|.+||=+|+|. |...+.+|+..+. +|+++|.+++-++.+++
T Consensus       162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            4456789999999975 8888888888765 79999999987777653

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=84.25  E-value=1.2  Score=36.86  Aligned_cols=115  Identities=13%  Similarity=0.099  Sum_probs=64.8

Q ss_pred             EEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          138 VIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       138 VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      |-=+|.|  ..|..+|+.+  .+.+|++-|.+++..+.+.+.    +.       ..  .    ..........|+|+..
T Consensus         4 Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g~-------~~--~----~s~~e~~~~~dvvi~~   64 (163)
T PF03446_consen    4 IGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----GA-------EV--A----DSPAEAAEQADVVILC   64 (163)
T ss_dssp             EEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----TE-------EE--E----SSHHHHHHHBSEEEE-
T ss_pred             EEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----hh-------hh--h----hhhhhHhhcccceEee
Confidence            3335554  4555544432  257899999998777666542    11       00  0    1111112345988884


Q ss_pred             CCCCCcccHHHHHHH--HHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccC
Q 021691          216 DCTFFKEFHKDLARI--IKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       216 d~ly~~~~~~~ll~~--l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                        +.+......++..  +...|+++.  .++-+++..+.+..++.+.+.+.|..+.......
T Consensus        65 --v~~~~~v~~v~~~~~i~~~l~~g~--iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G  122 (163)
T PF03446_consen   65 --VPDDDAVEAVLFGENILAGLRPGK--IIIDMSTISPETSRELAERLAAKGVRYVDAPVSG  122 (163)
T ss_dssp             --SSSHHHHHHHHHCTTHGGGS-TTE--EEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES
T ss_pred             --cccchhhhhhhhhhHHhhccccce--EEEecCCcchhhhhhhhhhhhhccceeeeeeeec
Confidence              4455555566555  555555554  5566667778888899999999998877665544

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07904 short chain dehydrogenase; Provisional

Probab=84.15  E-value=19  Score=31.67  Aligned_cols=78  Identities=17%  Similarity=0.169  Sum_probs=45.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhc---CCcEEEEEcCCHHH-HHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-----CC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATT---EALEVVISDGNPQV-VDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-----PY  204 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~---~~~~V~~tD~~~~~-l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-----~~  204 (309)
                      .+++||=.|++.| +|..+|+.+   ++.+|++++.+++- ++.+.+.+...+.    .++.+..+|..+...     ..
T Consensus         7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~----~~v~~~~~D~~~~~~~~~~~~~   81 (253)
T PRK07904          7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA----SSVEVIDFDALDTDSHPKVIDA   81 (253)
T ss_pred             CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC----CceEEEEecCCChHHHHHHHHH
Confidence            4678999998554 455555432   34699999988764 6655555544321    245666666654321     00


Q ss_pred             --CCCCccEEEEcC
Q 021691          205 --IVDTFDVIVASD  216 (309)
Q Consensus       205 --~~~~fDvIi~~d  216 (309)
                        ..+..|+++.+-
T Consensus        82 ~~~~g~id~li~~a   95 (253)
T PRK07904         82 AFAGGDVDVAIVAF   95 (253)
T ss_pred             HHhcCCCCEEEEee
Confidence              114789887643

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=84.12  E-value=16  Score=29.17  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=58.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHH---hcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAA---TTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~---~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      .++++|+=+|+|  ..|..++.   ..+..+|+++|.+++-.+.+.+.+.....     .+.+  .++     .......
T Consensus        17 ~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~-----~~~~--~~~-----~~~~~~~   82 (155)
T cd01065          17 LKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI-----AIAY--LDL-----EELLAEA   82 (155)
T ss_pred             CCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccc-----ceee--cch-----hhccccC
Confidence            567899999986  33333332   22346899999998766655444332110     0111  111     1113568


Q ss_pred             cEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          210 DVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       210 DvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      |+|+.+-+....  ....  +.  ...++++.  .++-.+.....+  .+.+.+++.|..+
T Consensus        83 Dvvi~~~~~~~~~~~~~~--~~--~~~~~~~~--~v~D~~~~~~~~--~l~~~~~~~g~~~  135 (155)
T cd01065          83 DLIINTTPVGMKPGDELP--LP--PSLLKPGG--VVYDVVYNPLET--PLLKEARALGAKT  135 (155)
T ss_pred             CEEEeCcCCCCCCCCCCC--CC--HHHcCCCC--EEEEcCcCCCCC--HHHHHHHHCCCce
Confidence            999986544332  1100  00  12244444  333333333333  7888899988755

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=83.78  E-value=7.8  Score=33.25  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=24.8

Q ss_pred             CCCCeEEEeCCCC-Ch-hhHHHHHhcCCcEEEEEcCC
Q 021691          133 FRSKRVIELGSGY-GL-AGLVIAATTEALEVVISDGN  167 (309)
Q Consensus       133 ~~g~~VLELG~Gt-G~-~~l~la~~~~~~~V~~tD~~  167 (309)
                      ...++|+=+|||. |. ++..+++ .|-.+++.+|.+
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCC
Confidence            4567999999984 54 3444444 566789999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=83.69  E-value=5.4  Score=36.82  Aligned_cols=104  Identities=12%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             CcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCC
Q 021691          129 HADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIV  206 (309)
Q Consensus       129 ~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~  206 (309)
                      .....+|.+||=.|+|. |...+.+|+..+..+|++++.+++-.+.+++ .   +..   .-+.....+|...-.. ...
T Consensus       167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~-~---ga~---~~i~~~~~~~~~~l~~~~~~  239 (351)
T cd08233         167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE-L---GAT---IVLDPTEVDVVAEVRKLTGG  239 (351)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h---CCC---EEECCCccCHHHHHHHHhCC
Confidence            34556788999888763 6777777887776689999988887776643 1   221   0011000111100000 112


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..+|+|+-+-.      ....+....+.|+++|  .++.+.
T Consensus       240 ~~~d~vid~~g------~~~~~~~~~~~l~~~G--~~v~~g  272 (351)
T cd08233         240 GGVDVSFDCAG------VQATLDTAIDALRPRG--TAVNVA  272 (351)
T ss_pred             CCCCEEEECCC------CHHHHHHHHHhccCCC--EEEEEc
Confidence            34899986311      1235667778888888  454443

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=83.50  E-value=2.8  Score=39.26  Aligned_cols=47  Identities=23%  Similarity=0.285  Sum_probs=38.0

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ....+|.+||=.|+|. |...+.+|+..++.+|+++|.+++-++.+++
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~  228 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK  228 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            3456789999999974 8888888888877789999999887777754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=83.49  E-value=2.9  Score=39.43  Aligned_cols=108  Identities=17%  Similarity=0.100  Sum_probs=62.5

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC--C-CC--CCceEEEEeeCCCCCC-CC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG--A-FG--GTTVKSMTLHWNQDDF-PY  204 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~--~-~~--~~~v~~~~l~w~~~~~-~~  204 (309)
                      .+-++....|||+|.|-+-.++|..++..+=+|+++....-+.+..|...+.-  . ++  ...+.....+.-.... ..
T Consensus       189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e  268 (419)
T KOG3924|consen  189 KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE  268 (419)
T ss_pred             ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence            45677789999999998877778877777777777655444444444333211  0 11  1223333332221111 12


Q ss_pred             CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .....++|+++.+.|+++..-.+- .+..-+++|-
T Consensus       269 I~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gt  302 (419)
T KOG3924|consen  269 IQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGT  302 (419)
T ss_pred             HhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcc
Confidence            345689999999999876654444 4444444443

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=83.28  E-value=8.7  Score=32.12  Aligned_cols=31  Identities=19%  Similarity=0.212  Sum_probs=21.4

Q ss_pred             eEEEeCCCC-Ch-hhHHHHHhcCCcEEEEEcCCH
Q 021691          137 RVIELGSGY-GL-AGLVIAATTEALEVVISDGNP  168 (309)
Q Consensus       137 ~VLELG~Gt-G~-~~l~la~~~~~~~V~~tD~~~  168 (309)
                      +|+=+|||. |. +...+++ .|..+++.+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence            478889984 54 3444444 5777899999765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=83.19  E-value=6.1  Score=36.36  Aligned_cols=105  Identities=18%  Similarity=0.219  Sum_probs=59.6

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC---CCC-CC
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW---NQD-DF  202 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w---~~~-~~  202 (309)
                      ......+|.+||=.|+|. |...+.+|+..|...|++++.+++-.+.++. .   +..   .-+.....++   ... ..
T Consensus       156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~-~---g~~---~vi~~~~~~~~~~~~~~~~  228 (343)
T cd05285         156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE-L---GAT---HTVNVRTEDTPESAEKIAE  228 (343)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCc---EEeccccccchhHHHHHHH
Confidence            344566788999888764 7777778888776559999888876666643 2   221   0001111111   000 00


Q ss_pred             CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ......+|+|+-+  ..    ....+....+.++++|  .++.+.
T Consensus       229 ~~~~~~~d~vld~--~g----~~~~~~~~~~~l~~~G--~~v~~g  265 (343)
T cd05285         229 LLGGKGPDVVIEC--TG----AESCIQTAIYATRPGG--TVVLVG  265 (343)
T ss_pred             HhCCCCCCEEEEC--CC----CHHHHHHHHHHhhcCC--EEEEEc
Confidence            0112458999863  11    1235677788888888  455443

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=82.99  E-value=21  Score=30.67  Aligned_cols=81  Identities=16%  Similarity=0.156  Sum_probs=48.1

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------  203 (309)
                      ..+++||=.|+ +|.+|..+++.+  .+.+|++++.++..+..+...+...+     .++.....|+.+...-       
T Consensus         4 ~~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~   77 (251)
T PRK12826          4 LEGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-----GKARARQVDVRDRAALKAAVAAG   77 (251)
T ss_pred             CCCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHHH
Confidence            35788997776 455666555432  24689999998776665555554332     2355666666543210       


Q ss_pred             -CCCCCccEEEEcCCCC
Q 021691          204 -YIVDTFDVIVASDCTF  219 (309)
Q Consensus       204 -~~~~~fDvIi~~d~ly  219 (309)
                       ...+++|+|+.+-..+
T Consensus        78 ~~~~~~~d~vi~~ag~~   94 (251)
T PRK12826         78 VEDFGRLDILVANAGIF   94 (251)
T ss_pred             HHHhCCCCEEEECCCCC
Confidence             0113689988865443

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=82.39  E-value=4.6  Score=36.69  Aligned_cols=100  Identities=13%  Similarity=0.087  Sum_probs=58.0

Q ss_pred             cCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691          130 ADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD  207 (309)
Q Consensus       130 ~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~  207 (309)
                      ....+|.+||=.|+ | .|...+.+|+..|. +|++++.+++-.+.+++    .+..   .-+....-+|..........
T Consensus       139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~~~  210 (329)
T cd08294         139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAAPD  210 (329)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHCCC
Confidence            44567899998884 3 47777888888765 79999988877776654    2221   00110001111000001124


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      .+|+|+-  ++-     ...+....++++++|  .++.+
T Consensus       211 gvd~vld--~~g-----~~~~~~~~~~l~~~G--~iv~~  240 (329)
T cd08294         211 GIDCYFD--NVG-----GEFSSTVLSHMNDFG--RVAVC  240 (329)
T ss_pred             CcEEEEE--CCC-----HHHHHHHHHhhccCC--EEEEE
Confidence            5898885  322     245677788899999  45444

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=82.23  E-value=6  Score=30.84  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=45.9

Q ss_pred             CeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          136 KRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       136 ~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      ++|.|+|.|- =.++-.|+++  +..|+++|+++.       ++. .++       ++..-|..++.       .-+--+
T Consensus        15 gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~-~g~-------~~v~DDitnP~-------~~iY~~   70 (129)
T COG1255          15 GKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP-EGL-------RFVVDDITNPN-------ISIYEG   70 (129)
T ss_pred             CcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc-ccc-------eEEEccCCCcc-------HHHhhC
Confidence            3899999985 3556666665  478999999875       111 122       22222222221       122223


Q ss_pred             cCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          215 SDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       215 ~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ++.+|.....+.+.+.+.++-+.-|
T Consensus        71 A~lIYSiRpppEl~~~ildva~aVg   95 (129)
T COG1255          71 ADLIYSIRPPPELQSAILDVAKAVG   95 (129)
T ss_pred             ccceeecCCCHHHHHHHHHHHHhhC
Confidence            3444555556777777777776655

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=82.21  E-value=19  Score=32.13  Aligned_cols=123  Identities=11%  Similarity=0.002  Sum_probs=68.0

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      .+|..+.........+...+|||+|+.-=+..+...+    ...+++.+|++...+....+.+...-..   -.|.....
T Consensus        64 aIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~---l~v~~l~~  140 (321)
T COG4301          64 AILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG---LEVNALCG  140 (321)
T ss_pred             HHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC---CeEeehhh
Confidence            3444344333445567899999999874443333322    2368999999999988665555443221   13333333


Q ss_pred             eCCCCCCCCCCC-CccEEEEcCCC--CCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          196 HWNQDDFPYIVD-TFDVIVASDCT--FFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       196 ~w~~~~~~~~~~-~fDvIi~~d~l--y~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +........+.. .==.++....+  +.++.-..++..++..++||.  .+++-.
T Consensus       141 ~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd--~~LlGv  193 (321)
T COG4301         141 DYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGD--YFLLGV  193 (321)
T ss_pred             hHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcc--eEEEec
Confidence            333221111111 11112222233  336667788999999999987  555543

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=82.02  E-value=3.6  Score=38.28  Aligned_cols=103  Identities=16%  Similarity=0.091  Sum_probs=61.0

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCC
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVD  207 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~  207 (309)
                      ....+|.+||=.|+|. |...+.+|+..+..+|+++|.+++-++.+++    .+..   .-+....-+|...-.. ....
T Consensus       172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~i~~~~~~~  244 (358)
T TIGR03451       172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTVNSSGTDPVEAIRALTGGF  244 (358)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcCCCcCHHHHHHHHhCCC
Confidence            3456789999999874 7788888888877679999999887777753    2221   0011111111000000 1123


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+|+|+-  +.-.    +..+....++++++|  .++++.
T Consensus       245 g~d~vid--~~g~----~~~~~~~~~~~~~~G--~iv~~G  276 (358)
T TIGR03451       245 GADVVID--AVGR----PETYKQAFYARDLAG--TVVLVG  276 (358)
T ss_pred             CCCEEEE--CCCC----HHHHHHHHHHhccCC--EEEEEC
Confidence            5898874  3332    234566677889999  555544

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK11524 putative methyltransferase; Provisional

Probab=81.88  E-value=5.2  Score=36.26  Aligned_cols=57  Identities=16%  Similarity=0.263  Sum_probs=35.1

Q ss_pred             CCCccEEEEcCCCCCc-----------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          206 VDTFDVIVASDCTFFK-----------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~-----------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      +++||+|++ |+.|..                 .....++..+.++|+++|  .++++.....  .. +...+.+.||.+
T Consensus        25 ~~siDlIit-DPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G--~i~i~~~~~~--~~-~~~~~~~~~f~~   98 (284)
T PRK11524         25 SESVDLIFA-DPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQG--TMYIMNSTEN--MP-FIDLYCRKLFTI   98 (284)
T ss_pred             cCcccEEEE-CCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCc--EEEEEcCchh--hh-HHHHHHhcCcce
Confidence            467999999 554532                 113568899999999999  5555433221  12 344455567654

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=81.80  E-value=28  Score=33.45  Aligned_cols=111  Identities=21%  Similarity=0.207  Sum_probs=60.7

Q ss_pred             CeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC-------------CCceEEEEeeCCCC
Q 021691          136 KRVIELGSGY-GLA-GLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG-------------GTTVKSMTLHWNQD  200 (309)
Q Consensus       136 ~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~-------------~~~v~~~~l~w~~~  200 (309)
                      ++|.=+|.|. |.. +..+++.  +.+|++.|.+++.++.++..    .....             .+...+.     . 
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g----~~~~~e~~l~~~l~~~~~~g~l~~~-----~-   71 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRG----EIHIVEPDLDMVVKTAVEGGYLRAT-----T-   71 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCC----CCCcCCCCHHHHHHHHhhcCceeee-----c-
Confidence            4676777774 322 2223332  57999999999888764321    11000             0111111     0 


Q ss_pred             CCCCCCCCccEEEEcCCCC-------CcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691          201 DFPYIVDTFDVIVASDCTF-------FKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN  264 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly-------~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~  264 (309)
                          .....|+|+.+-+.-       +.......++.+...++++.  .++..++..+.+.+++...+.+.
T Consensus        72 ----~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~--iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         72 ----TPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGD--LVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             ----ccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCC--EEEEeCCCCCCHHHHHHHHHHHh
Confidence                012468887644331       22345555666777776655  56666666777777777666654

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=81.42  E-value=12  Score=33.95  Aligned_cols=131  Identities=15%  Similarity=0.134  Sum_probs=70.9

Q ss_pred             cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..+|++||=+|+|- +..-+...+..+..+++.+..+.+-.+.+.+.+...+.     .+.....  .  +.... ..+|
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~-----~~~~~~~--~--~~~~~-~~~d  192 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA-----AVEAAAL--A--DLEGL-EEAD  192 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc-----ccccccc--c--ccccc-cccC
Confidence            44689999999985 33323323345668999999987666666555443321     1111111  0  00111 1589


Q ss_pred             EEEEcCCCCCccc-HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCchhhh
Q 021691          211 VIVASDCTFFKEF-HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWK  280 (309)
Q Consensus       211 vIi~~d~ly~~~~-~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~~~~  280 (309)
                      +||-+-++-.... -+.++.  ..+|+++.    ++++.......-.|++.+++.|-.+  +.-...-+++
T Consensus       193 liINaTp~Gm~~~~~~~~~~--~~~l~~~~----~v~D~vY~P~~TplL~~A~~~G~~~--idGl~Mlv~Q  255 (283)
T COG0169         193 LLINATPVGMAGPEGDSPVP--AELLPKGA----IVYDVVYNPLETPLLREARAQGAKT--IDGLGMLVHQ  255 (283)
T ss_pred             EEEECCCCCCCCCCCCCCCc--HHhcCcCC----EEEEeccCCCCCHHHHHHHHcCCeE--ECcHHHHHHH
Confidence            9999776655443 122333  55565544    3333222212347999999998773  4333333443

>PLN02827 Alcohol dehydrogenase-like

Probab=80.84  E-value=4.1  Score=38.41  Aligned_cols=46  Identities=26%  Similarity=0.295  Sum_probs=36.6

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQ  175 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~  175 (309)
                      ....+|.+||=.|+|. |...+.+|+..+...|+++|.+++-.+.++
T Consensus       189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~  235 (378)
T PLN02827        189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK  235 (378)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence            3456799999999875 888888888887778999998887666664

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=80.83  E-value=17  Score=34.66  Aligned_cols=125  Identities=22%  Similarity=0.244  Sum_probs=64.6

Q ss_pred             CeEEEeCCCC-ChhhHH-HHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC-CCCC-----ceEEEEeeCCCCCCCCCCC
Q 021691          136 KRVIELGSGY-GLAGLV-IAATTEALEVVISDGNPQVVDYIQRNVDANSGA-FGGT-----TVKSMTLHWNQDDFPYIVD  207 (309)
Q Consensus       136 ~~VLELG~Gt-G~~~l~-la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~-~~~~-----~v~~~~l~w~~~~~~~~~~  207 (309)
                      .+|-=+|=|. |+..-. +|+  .+.+|+|+|+++..++.+..-  .+.+. ....     .+....+....+  +....
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~--~G~~ViG~DIn~~~Vd~ln~G--~~~i~e~~~~~~v~~~v~~g~lraTtd--~~~l~   83 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFAS--AGFKVIGVDINQKKVDKLNRG--ESYIEEPDLDEVVKEAVESGKLRATTD--PEELK   83 (436)
T ss_pred             eEEEEEccccccHHHHHHHHH--cCCceEeEeCCHHHHHHHhCC--cceeecCcHHHHHHHHHhcCCceEecC--hhhcc
Confidence            4566666663 655332 233  257999999999888876421  01000 0000     000001111101  11112


Q ss_pred             CccEEEEc-CCCCC------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHh--CCCeE
Q 021691          208 TFDVIVAS-DCTFF------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEG--NHLHF  268 (309)
Q Consensus       208 ~fDvIi~~-d~ly~------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~--~G~~~  268 (309)
                      ..|+++.+ .....      .+......+++...|++|-  .+++-++..+.+.+++..-+.+  .|+.+
T Consensus        84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~--LVIlEST~~PGTTe~v~~plle~~sgL~~  151 (436)
T COG0677          84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGD--LVILESTTPPGTTEEVVKPLLEERSGLKF  151 (436)
T ss_pred             cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCC--EEEEecCCCCCcHHHHHHHHHhhcCCCcc
Confidence            45665443 33222      2335667788889999887  6666666666676776665544  45555

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=80.56  E-value=5  Score=39.44  Aligned_cols=97  Identities=19%  Similarity=0.195  Sum_probs=62.9

Q ss_pred             eEEEeCCCCChhhHH---HHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          137 RVIELGSGYGLAGLV---IAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       137 ~VLELG~GtG~~~l~---la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .|+=+|+|-|-+.-.   .|+... .-++++++-+|.++-.++. ....+.   ..+|+...-|......+  ..+.|++
T Consensus       370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W---~~~Vtii~~DMR~w~ap--~eq~DI~  443 (649)
T KOG0822|consen  370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECW---DNRVTIISSDMRKWNAP--REQADII  443 (649)
T ss_pred             EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhh---cCeeEEEeccccccCCc--hhhccch
Confidence            577889999965433   333322 2378999999999887764 222222   24566555544433322  3678998


Q ss_pred             EEc--CCCCCcccHHHHHHHHHHHHhcCC
Q 021691          213 VAS--DCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       213 i~~--d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ++-  ..+-+.+.-+..+.-+.++||++|
T Consensus       444 VSELLGSFGDNELSPECLDG~q~fLkpdg  472 (649)
T KOG0822|consen  444 VSELLGSFGDNELSPECLDGAQKFLKPDG  472 (649)
T ss_pred             HHHhhccccCccCCHHHHHHHHhhcCCCc
Confidence            872  234445667888999999999998

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=80.45  E-value=4.6  Score=37.69  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=25.0

Q ss_pred             CCCCeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCH
Q 021691          133 FRSKRVIELGSGY-GLA-GLVIAATTEALEVVISDGNP  168 (309)
Q Consensus       133 ~~g~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~  168 (309)
                      ..+++||=+|||. |.. +..|++ .|..+++.+|.+.
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~   58 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY   58 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence            4568999999984 533 344444 5677999999874

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=80.34  E-value=5.7  Score=37.06  Aligned_cols=103  Identities=12%  Similarity=0.029  Sum_probs=58.5

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe--eCCCCCCCCCC
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL--HWNQDDFPYIV  206 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l--~w~~~~~~~~~  206 (309)
                      ....+|.+||=.|+|. |...+.+|+..+...|++++.+++-.+.+++ +.....      +.....  ++.........
T Consensus       179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~------v~~~~~~~~~~~~l~~~~~  251 (365)
T cd05279         179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGATEC------INPRDQDKPIVEVLTEMTD  251 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCCee------cccccccchHHHHHHHHhC
Confidence            4556788999888874 7777777888877679999988877666643 211111      111111  00000000012


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHh-cCCCeEEEEEe
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLK-KVGPSEALFFS  247 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk-~~G~~~~ii~~  247 (309)
                      +.+|+|+-+  .-.    ...+....+.++ ++|  .++.+.
T Consensus       252 ~~~d~vid~--~g~----~~~~~~~~~~l~~~~G--~~v~~g  285 (365)
T cd05279         252 GGVDYAFEV--IGS----ADTLKQALDATRLGGG--TSVVVG  285 (365)
T ss_pred             CCCcEEEEC--CCC----HHHHHHHHHHhccCCC--EEEEEe
Confidence            458999863  211    345666777788 888  454443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	1e-24
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	2e-06
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	9e-06
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-05
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	1e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-04
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	2e-04
3lpm_A	259	Putative methyltransferase; structural genomics, p	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	5e-04
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	8e-04

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score =   99 bits (248), Expect = 1e-24
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 19/174 (10%)

Query: 116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISD-GNPQVVDYI 174
           W     LA       ++   K V ELG+G GL  +V A    A +VV +D  +P++++ +
Sbjct: 61  WSGARALADTLCWQPELIAGKTVCELGAGAGLVSIV-AFLAGADQVVATDYPDPEILNSL 119

Query: 175 QRNVDAN------SGAFGGTTVKSMTLHWNQD----DFPYIVDTFDVIVASDCTFFKEFH 224
           + N+  +      S      + K +   W            +  F V++ +D   F + H
Sbjct: 120 ESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAH 179

Query: 225 KDLARIIKFLLKKVGPSEA----LFFSPKRGDSLDK---FLEEIEGNHLHFSII 271
             L R +K LL            + F+  R    ++   F   +  +    +  
Sbjct: 180 DALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP 233

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 13/176 (7%)

Query: 39  IGVMNRISRKTTQGFNLIPCQLIEKISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGD 98
            G   R    +T                 + AR+               Q V    +  D
Sbjct: 134 AGAKARDIHTSTLELFEKVLGPTTTTLAWKKARLINCTFNEPQLA-DAPQTVSWKLEGTD 192

Query: 99  FEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA 158
           + I N  N      V      D+ A F + H        +++LG G G+ GL +      
Sbjct: 193 WTIHNHAN------VFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQ 246

Query: 159 LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD-TFDVIV 213
            +VV  D +P  V   + NV+ N        +       N +    +    F+ ++
Sbjct: 247 AKVVFVDESPMAVASSRLNVETN----MPEALDRCEFMIN-NALSGVEPFRFNAVL 297

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM 193
           R+ R+ +LG+G G AG+ +AA  E  EV + + + ++ ++ +R+++    A     ++ +
Sbjct: 36  RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95

Query: 194 TLHWNQDDFPYIVD-----TFDVIVAS 215
                      +        F  ++ +
Sbjct: 96  EADVTLRAKARVEAGLPDEHFHHVIMN 122

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTT 189
            ++     + ++G G G   +V+A      +V   D     +D   RN   +     G  
Sbjct: 42  DNLTEKSLIADIGCGTGGQTMVLAGHVTG-QVTGLDFLSGFIDIFNRNARQS-----GLQ 95

Query: 190 VKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLK---KVGPSEALFF 246
            +   +  + DD P+  +  D+I +    +   F + L    K+ LK    +  SE  +F
Sbjct: 96  NRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKY-LKKGGYLAVSECSWF 154

Query: 247 SPKRGDSLDKFLEE 260
           + +R   ++ F  +
Sbjct: 155 TDERPAEINDFWMD 168

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 14/88 (15%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 127 LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG 186
           + +  + +   +++LG GYG+ G+ +A   ++  +   D N + +   + N+  N     
Sbjct: 45  VENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMA--DINRRAIKLAKENIKLN----- 97

Query: 187 GTTVKSMTLHWNQDDFPYIVD-TFDVIV 213
                 + +  + D +  + D  ++ I+
Sbjct: 98  NLDNYDIRVVHS-DLYENVKDRKYNKII 124

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTT 189
            ++    ++ ++G G G   L +A   +  ++   D  P  ++    N            
Sbjct: 42  NELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKA-----NCA 95

Query: 190 VKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFL 234
            +   +  + D+ P+  +  D+I +    +   F + +    K+L
Sbjct: 96  DRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYL 140

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 127 LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG 186
           LS        +V+++G G G+  +  A  +  + + + D +   V+  +  + AN     
Sbjct: 189 LSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG- 247

Query: 187 GTTVKSMTLHWNQDDFPYIVDTFDVIV 213
                   +  + + F  +   FD+I+
Sbjct: 248 -------EVFAS-NVFSEVKGRFDMII 266

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 30/155 (19%)

Query: 134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM 193
           R  ++I+L SG G+  L+++  T+A ++V  +   ++ D  +R+V  N        ++ +
Sbjct: 49  RKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLE---DQIEII 104

Query: 194 TLHWNQDDFPYIVDTFDVIVASDCTFFKEF---------------------HKDLARIIK 232
                +       +  D++  +   +F                         +D  R+  
Sbjct: 105 EYDLKKITDLIPKERADIVTCNP-PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAA 163

Query: 233 FLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLH 267
            LLK+ G          R + L   ++ +    L 
Sbjct: 164 SLLKQGG----KANFVHRPERLLDIIDIMRKYRLE 194

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 52/326 (15%), Positives = 96/326 (29%), Gaps = 91/326 (27%)

Query: 1   METDNTKTTLRPASLRWKILRQALLRRSSPQNSDEQSQIGVMNRI-SRKTTQGFNLIPCQ 59
           +   + +  LR   L+ K     LL               V+  + + K    FN + C+
Sbjct: 225 LRIHSIQAELR-RLLKSKPYENCLL---------------VLLNVQNAKAWNAFN-LSCK 267

Query: 60  -LIEKISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFE---ICNRC-NIDNTGLVC 114
            L+     +R  +V   L  A +  + L     +   L   E   +  +  +     L  
Sbjct: 268 ILL----TTRFKQVTDFLSAATTTHISL---DHHSMTLTPDEVKSLLLKYLDCRPQDL-- 318

Query: 115 HWPSED------VLAFFSLSHADMF-RSKRVIELGSGYGLAGLVIAATTEALEVVISDGN 167
             P E        L+  + S  D          +              T  +E  ++   
Sbjct: 319 --PREVLTTNPRRLSIIAESIRDGLATWDNWKHVN---------CDKLTTIIESSLNVLE 367

Query: 168 PQVVDYIQRNVDANSGAFG----GTTVKSMTLH--WNQDDFPYIVDTFDVIVASDCTFFK 221
           P      ++  D              + ++ L   W         D   V+         
Sbjct: 368 P---AEYRKMFDR----LSVFPPSAHIPTILLSLIWFDVIK---SDVMVVV--------N 409

Query: 222 EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH-LHFSIIENYNAEIWK 280
           + HK        L++K  P E+    P       +   ++E  + LH SI+++YN     
Sbjct: 410 KLHK------YSLVEK-QPKESTISIP---SIYLELKVKLENEYALHRSIVDHYNI---- 455

Query: 281 RHQMLMSGDESWPNYDKDHCYPFLVR 306
             +   S D   P  D  + Y  +  
Sbjct: 456 -PKTFDSDDLIPPYLD-QYFYSHIGH 479

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN 181
            +   ++   K V++  S  G+ G+  A  T A EV ++D +    + ++RNV  N
Sbjct: 39  VVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLN 94

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA 184
           F +S A+     +++ L  G G     +A+     EV   D +   +   ++        
Sbjct: 20  FLVSVANQIPQGKILCLAEGEGRNACFLAS--LGYEVTAVDQSSVGLAKAKQLAQEKG-- 75

Query: 185 FGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLK 236
                VK  T+  N  DF  + D ++ IV+  C       + L   +   LK
Sbjct: 76  -----VKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLK 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.87
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.71
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.71
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.7
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.69
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.69
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.68
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.68
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.68
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.67
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.67
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.67
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.66
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.66
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.66
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.65
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.65
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.65
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.65
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.64
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.63
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.63
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.61
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.61
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.61
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.6
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.6
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.6
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.6
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.6
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.6
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.6
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.59
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.59
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.59
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.59
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.58
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.58
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.58
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.58
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.57
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.57
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.57
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.57
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.57
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.57
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.57
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.56
3ocj_A	305	Putative exported protein; structural genomics, PS	99.56
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.56
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.56
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.55
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.55
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.55
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.55
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.55
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.55
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.55
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.54
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.54
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.54
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.54
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.53
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.53
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.53
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.53
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.53
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.53
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.53
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.52
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.52
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.52
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.51
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.51
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.5
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.5
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.5
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.5
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.5
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.5
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.5
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.49
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.49
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.49
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.49
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.49
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.49
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.49
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.49
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.49
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.48
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.48
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.48
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.47
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.47
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.47
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.47
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.47
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.47
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.46
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.46
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.46
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.46
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.46
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.46
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.46
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.46
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.45
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.45
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.45
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.45
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.45
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.45
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.44
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.44
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.44
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.44
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.44
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.44
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.44
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.44
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.44
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.43
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.43
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.43
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.42
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.42
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.42
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.42
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.42
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.42
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.42
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.42
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.41
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.41
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.41
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.41
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.41
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.4
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.4
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.4
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.39
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.39
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.39
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.38
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.38
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.37
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.37
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.37
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.36
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.36
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.36
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.36
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.36
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.35
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.35
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.35
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.35
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.35
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.34
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.34
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.34
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.34
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.34
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.34
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.34
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.34
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.34
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.34
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.34
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.34
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.34
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.33
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.33
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.32
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.32
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.32
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.32
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.31
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.31
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.31
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.31
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.31
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.31
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.3
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.3
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.3
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.29
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.29
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.29
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.29
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.29
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.28
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.28
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.28
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.28
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.27
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.27
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.27
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.27
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.27
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.27
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.26
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.26
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.26
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.25
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.24
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.24
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.24
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.23
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.22
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.22
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.2
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.19
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.19
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.18
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.18
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.18
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.18
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.17
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.17
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.16
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.16
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.16
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.15
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.14
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.14
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.14
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.14
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.14
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.13
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.1
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.1
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.1
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.09
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.08
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.07
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.07
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.06
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.05
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.05
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.05
2o07_A	304	Spermidine synthase; structural genomics, structur	99.02
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.02
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.0
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.0
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.0
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.96
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.95
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.94
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.93
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.92
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.89
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.89
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.86
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.86
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.86
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.84
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.84
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.81
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.79
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.79
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.78
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.7
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.68
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.66
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.66
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.62
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.58
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.57
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.53
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.52
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.52
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.5
3lkd_A	542	Type I restriction-modification system methyltrans	98.48
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.46
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.45
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.41
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.41
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.37
3khk_A	544	Type I restriction-modification system methylation	98.36
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.3
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.23
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.15
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.12
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.12
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.1
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.88
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.79
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.78
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.58
3ufb_A	530	Type I restriction-modification system methyltran	97.55
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.55
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.54
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.52
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.46
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.45
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.31
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.3
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.3
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.26
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.89
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.84
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.77
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.64
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.58
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.45
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.4
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.4
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.16
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.61
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	94.93
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.9
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.63
3me5_A	482	Cytosine-specific methyltransferase; structural ge	94.61
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.56
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.26
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.11
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.98
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.81
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	93.71
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.67
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.41
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.23
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	92.71
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.47
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	92.39
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	92.24
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.2
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	92.06
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	91.91
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	91.84
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	91.77
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	91.7
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	91.68
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	91.63
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	91.63
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	91.6
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	91.54
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	91.2
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.13
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	90.98
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	90.92
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	90.89
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	90.74
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	90.67
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	90.59
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	90.22
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	90.16
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	90.1
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	90.03
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	89.78
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	89.76
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	89.66
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	89.32
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	89.25
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	89.13
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	89.05
4eye_A	342	Probable oxidoreductase; structural genomics, niai	88.08
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	87.93
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	87.91
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	87.79
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	87.67
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	87.65
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	87.48
3gms_A	340	Putative NADPH:quinone reductase; structural genom	87.33
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	87.15
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	86.98
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	86.9
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	86.72
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	86.42
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	86.15
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	85.93
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	85.81
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	85.72
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	85.47
2zig_A	297	TTHA0409, putative modification methylase; methylt	85.42
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	85.37
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	84.9
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	84.08
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	83.91
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	83.74
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	83.38
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	83.36
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	82.93
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	82.65
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	82.38
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	82.33
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	82.15
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	81.97
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	81.61
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	81.05
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	81.05
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	80.56
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	80.43
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	80.14
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	80.01

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.87  E-value=1.9e-21  Score=175.21  Aligned_cols=203  Identities=20%  Similarity=0.242  Sum_probs=130.2

Q ss_pred             CCccccccccccCCceeEEEEeccCCCCCceeEEeeccCccccCCceeecccccCCCCceeecccHHHHHHHHhhCcCcC
Q 021691           54 NLIPCQLIEKISNSRDARVCYTLPVAGSPKLFLTQRVDNHADLGDFEICNRCNIDNTGLVCHWPSEDVLAFFSLSHADMF  133 (309)
Q Consensus        54 ~l~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~W~sa~~La~~l~~~~~~~  133 (309)
                      .|+..+..+..+.+...|..|..+.+....-...++.             ......+|.. +||++..|++++.......
T Consensus        13 ~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i-------------~g~~~~~g~~-~~~~~~~l~~~l~~~~~~~   78 (281)
T 3bzb_A           13 GLPGTPPDFYRERQRSRVERYQSPAGAPLQCSVQVQT-------------TQEHPLWTSH-VWSGARALADTLCWQPELI   78 (281)
T ss_dssp             ----------------CEEEEECCSSCC-CCEEEEEC-------------C------------CHHHHHHHHHHHCGGGT
T ss_pred             cHhhCCCccCChHHHHHHHHHHhhccccccCCeEEEE-------------CCCCCCCCce-eecHHHHHHHHHHhcchhc
Confidence            5555444444455566688888776533110011110             0113456776 9999999999999987777


Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcC-CHHHHHHHHHHHHhccCCC-C-C----CceEEEEeeCCCCCCCC--
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDG-NPQVVDYIQRNVDANSGAF-G-G----TTVKSMTLHWNQDDFPY--  204 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~-~~~~l~~~~~n~~~n~~~~-~-~----~~v~~~~l~w~~~~~~~--  204 (309)
                      ++++|||||||+|.+++.+++. ++.+|+++|+ ++.+++.+++|+..|.... + .    .++.+..++|++.....  
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            8999999999999999988775 5569999999 8999999999996553211 0 1    36788889998643221  


Q ss_pred             --CCCCccEEEEcCCCCCcccHHHHHHHHHHHHh---c--CCCeEEEE-EeecCC---chHHHHHHHHHhCC-CeEEEEe
Q 021691          205 --IVDTFDVIVASDCTFFKEFHKDLARIIKFLLK---K--VGPSEALF-FSPKRG---DSLDKFLEEIEGNH-LHFSIIE  272 (309)
Q Consensus       205 --~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk---~--~G~~~~ii-~~~~r~---~~~~~f~~~~~~~G-~~~~~~~  272 (309)
                        ..++||+|+++|++|+......+++.+.++|+   +  +|  .+++ +.+.++   .....|++.+++.| |.++.+.
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG--~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~  235 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTA--VALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWL  235 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTC--EEEEEECC--------CTHHHHHHHHSTTEEEEEEE
T ss_pred             hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCC--EEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEec
Confidence              24689999999999999999999999999999   8  88  4433 444443   23467889999999 9987664


Q ss_pred             c
Q 021691          273 N  273 (309)
Q Consensus       273 ~  273 (309)
                      .
T Consensus       236 ~  236 (281)
T 3bzb_A          236 S  236 (281)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.71  E-value=9.9e-17  Score=141.24  Aligned_cols=151  Identities=15%  Similarity=0.041  Sum_probs=117.3

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ......+.......++.+|||+|||+|..+..+++.. +.+|+++|.++.+++.+++++..+++.   .++.+...++..
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~v~~~~~d~~~   97 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVS---ERVHFIHNDAAG   97 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCCTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEECChHh
Confidence            3444455555556788999999999999999998876 459999999999999999999988763   467777777654


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec--------------------CCchHHHHHH
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK--------------------RGDSLDKFLE  259 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~--------------------r~~~~~~f~~  259 (309)
                      ..  . .++||+|++..++++..+...+++.+.++|+|||  .+++..+.                    +..+...+.+
T Consensus        98 ~~--~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (256)
T 1nkv_A           98 YV--A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGG--IMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVG  172 (256)
T ss_dssp             CC--C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEE--EEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHH
T ss_pred             CC--c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCe--EEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHH
Confidence            32  2 5789999999999998889999999999999999  55554431                    1124467889


Q ss_pred             HHHhCCCeEEEEeccCchhh
Q 021691          260 EIEGNHLHFSIIENYNAEIW  279 (309)
Q Consensus       260 ~~~~~G~~~~~~~~~~~~~~  279 (309)
                      .++++||.+..+...+...|
T Consensus       173 ~l~~aGf~~~~~~~~~~~~~  192 (256)
T 1nkv_A          173 AFDDLGYDVVEMVLADQEGW  192 (256)
T ss_dssp             HHHTTTBCCCEEEECCHHHH
T ss_pred             HHHHCCCeeEEEEeCCHHHH
Confidence            99999998766554444444

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.71  E-value=6.4e-16  Score=136.12  Aligned_cols=154  Identities=15%  Similarity=0.162  Sum_probs=119.6

Q ss_pred             ccHHHHHHHHhhCc-CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          117 PSEDVLAFFSLSHA-DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       117 ~sa~~La~~l~~~~-~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      |....+...+.... .+.++.+|||+|||+|..+..+++..++ +|+++|+++.+++.+++++..+++.   .++.+...
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~~~~~  103 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCA---DRVKGITG  103 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEEC
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCC---CceEEEEC
Confidence            44444444444433 5667889999999999999999998654 9999999999999999999998873   45777777


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec--C-----------------CchHHH
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK--R-----------------GDSLDK  256 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~--r-----------------~~~~~~  256 (309)
                      |+...  +...++||+|++..++++. +...+++.+.++|+|||  .+++..+.  .                 ..+...
T Consensus       104 d~~~~--~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (257)
T 3f4k_A          104 SMDNL--PFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGG--FIAVSEASWFTSERPAEIEDFWMDAYPEISVIPT  178 (257)
T ss_dssp             CTTSC--SSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEE--EEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHH
T ss_pred             ChhhC--CCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCc--EEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHH
Confidence            76433  3445789999999999998 78999999999999999  56555431  1                 124567


Q ss_pred             HHHHHHhCCCeEEEEeccCchhh
Q 021691          257 FLEEIEGNHLHFSIIENYNAEIW  279 (309)
Q Consensus       257 f~~~~~~~G~~~~~~~~~~~~~~  279 (309)
                      +.+.++++||.+..........|
T Consensus       179 ~~~~l~~aGf~~v~~~~~~~~~w  201 (257)
T 3f4k_A          179 CIDKMERAGYTPTAHFILPENCW  201 (257)
T ss_dssp             HHHHHHHTTEEEEEEEECCGGGT
T ss_pred             HHHHHHHCCCeEEEEEECChhhH
Confidence            78889999999887766666666

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.70  E-value=3.5e-16  Score=138.94  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=118.8

Q ss_pred             ccHHHHHHHHhhCc-CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          117 PSEDVLAFFSLSHA-DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       117 ~sa~~La~~l~~~~-~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      |........+.... .+.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++..+++.   .++.+...
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~  103 (267)
T 3kkz_A           28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQ---NRVTGIVG  103 (267)
T ss_dssp             SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEEC
T ss_pred             CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCC---cCcEEEEc
Confidence            33344444444433 3667899999999999999998887 6679999999999999999999988873   46888888


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec-------------------CCchHHH
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK-------------------RGDSLDK  256 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~-------------------r~~~~~~  256 (309)
                      |+...  +...++||+|++..++++. +...+++.+.++|+|||  .+++..+.                   .-.+...
T Consensus       104 d~~~~--~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (267)
T 3kkz_A          104 SMDDL--PFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGG--YLAVSECSWFTDERPAEINDFWMDAYPEIDTIPN  178 (267)
T ss_dssp             CTTSC--CCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEE--EEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHH
T ss_pred             ChhhC--CCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCC--EEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHH
Confidence            77543  3345789999999999988 78999999999999999  56555432                   1114456


Q ss_pred             HHHHHHhCCCeEEEEeccCchhh
Q 021691          257 FLEEIEGNHLHFSIIENYNAEIW  279 (309)
Q Consensus       257 f~~~~~~~G~~~~~~~~~~~~~~  279 (309)
                      +.+.++++||.+..+.......|
T Consensus       179 ~~~~l~~aGf~~v~~~~~~~~~w  201 (267)
T 3kkz_A          179 QVAKIHKAGYLPVATFILPENCW  201 (267)
T ss_dssp             HHHHHHHTTEEEEEEEECCGGGT
T ss_pred             HHHHHHHCCCEEEEEEECCHhHH
Confidence            77889999999887777665555

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.69  E-value=6.7e-16  Score=137.29  Aligned_cols=153  Identities=16%  Similarity=0.119  Sum_probs=120.8

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      -++...+.+.+.....+.++.+|||+|||+|..+..+++.. +.+|+++|.++.+++.+++++..+++.   .++.+...
T Consensus        43 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~  118 (273)
T 3bus_A           43 DDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLA---NRVTFSYA  118 (273)
T ss_dssp             HHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEEC
Confidence            44556677777776667789999999999999999988865 569999999999999999999888763   45777777


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----------------------Cc
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----------------------GD  252 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------~~  252 (309)
                      ++...  +..+++||+|++.+++++..+...+++.+.++|+|||  .+++.....                       ..
T Consensus       119 d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (273)
T 3bus_A          119 DAMDL--PFEDASFDAVWALESLHHMPDRGRALREMARVLRPGG--TVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLG  194 (273)
T ss_dssp             CTTSC--CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEE--EEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccccC--CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCe--EEEEEEeeccCCCChhHHHHHHHHHhhcCccCCC
Confidence            66543  3445789999999999999999999999999999999  555544221                       12


Q ss_pred             hHHHHHHHHHhCCCeEEEEeccCc
Q 021691          253 SLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       253 ~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      +.+.+.+.++++||.+..++....
T Consensus       195 ~~~~~~~~l~~aGf~~~~~~~~~~  218 (273)
T 3bus_A          195 GIDEYESDVRQAELVVTSTVDISA  218 (273)
T ss_dssp             CHHHHHHHHHHTTCEEEEEEECHH
T ss_pred             CHHHHHHHHHHcCCeEEEEEECcH
Confidence            345677889999999877766443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.69  E-value=3.6e-16  Score=138.06  Aligned_cols=151  Identities=15%  Similarity=0.131  Sum_probs=121.4

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .++....+.+.+.......++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++..+      .++.+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~  108 (266)
T 3ujc_A           36 ISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN------NKIIFEA  108 (266)
T ss_dssp             CSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC------TTEEEEE
T ss_pred             cccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC------CCeEEEE
Confidence            678888888888887777889999999999999999998876 569999999999999998875443      3567777


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------------Cc
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR--------------------GD  252 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------~~  252 (309)
                      .|....  +...++||+|++..++++.  .+...+++.+.++|+|||  .+++..+..                    ..
T Consensus       109 ~d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (266)
T 3ujc_A          109 NDILTK--EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTG--TLLITDYCATEKENWDDEFKEYVKQRKYTLI  184 (266)
T ss_dssp             CCTTTC--CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEEEEESCGGGCCHHHHHHHHHHTCCCC
T ss_pred             CccccC--CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCC--EEEEEEeccCCcccchHHHHHHHhcCCCCCC
Confidence            666543  3446789999999999998  899999999999999999  555554321                    23


Q ss_pred             hHHHHHHHHHhCCCeEEEEeccCc
Q 021691          253 SLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       253 ~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      +.+.+.+.++++||.+.....+..
T Consensus       185 ~~~~~~~~l~~~Gf~~~~~~~~~~  208 (266)
T 3ujc_A          185 TVEEYADILTACNFKNVVSKDLSD  208 (266)
T ss_dssp             CHHHHHHHHHHTTCEEEEEEECHH
T ss_pred             CHHHHHHHHHHcCCeEEEEEeCCH
Confidence            567788899999999877766543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.68  E-value=8.1e-16  Score=132.20  Aligned_cols=149  Identities=14%  Similarity=0.027  Sum_probs=116.5

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      |.....+...+    ...++.+|||+|||+|..+..+++.. +..+|+++|.++.+++.+++++..++..    ++.+..
T Consensus        23 ~~~~~~~~~~~----~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~   94 (219)
T 3dh0_A           23 LFDPEKVLKEF----GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK----NVEVLK   94 (219)
T ss_dssp             TCCHHHHHHHH----TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT----TEEEEE
T ss_pred             ccCHHHHHHHh----CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC----cEEEEe
Confidence            44444444444    34568899999999999999999886 4569999999999999999999988762    577777


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec-----------CCchHHHHHHHHHh
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK-----------RGDSLDKFLEEIEG  263 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~-----------r~~~~~~f~~~~~~  263 (309)
                      .+....  +...++||+|+++.++++..+...+++.+.++|+|||  .+++....           +..+.+.+.+.+++
T Consensus        95 ~d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (219)
T 3dh0_A           95 SEENKI--PLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFA--YLAIIDWKKEERDKGPPPEEVYSEWEVGLILED  170 (219)
T ss_dssp             CBTTBC--SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEE--EEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH
T ss_pred             cccccC--CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCe--EEEEEEecccccccCCchhcccCHHHHHHHHHH
Confidence            766533  2345789999999999999999999999999999999  56555432           12356889999999


Q ss_pred             CCCeEEEEeccCc
Q 021691          264 NHLHFSIIENYNA  276 (309)
Q Consensus       264 ~G~~~~~~~~~~~  276 (309)
                      +||.+.....+..
T Consensus       171 ~Gf~~~~~~~~~~  183 (219)
T 3dh0_A          171 AGIRVGRVVEVGK  183 (219)
T ss_dssp             TTCEEEEEEEETT
T ss_pred             CCCEEEEEEeeCC
Confidence            9999877655444

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.68  E-value=2.7e-16  Score=134.54  Aligned_cols=148  Identities=16%  Similarity=0.164  Sum_probs=113.0

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      |....+++.+.......++ +|||+|||+|..+..+++. ++.+|+++|.++.+++.+++++..++..   .++.+...+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~d  101 (219)
T 3dlc_A           27 PIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLN---DRIQIVQGD  101 (219)
T ss_dssp             THHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECB
T ss_pred             cccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcccc---CceEEEEcC
Confidence            3334455555554444445 9999999999999999887 5679999999999999999999988763   467777777


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec---------------------------
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK---------------------------  249 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~---------------------------  249 (309)
                      ....  +...++||+|+++.++++..+...+++.+.++|+|||  .+++....                           
T Consensus       102 ~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (219)
T 3dlc_A          102 VHNI--PIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGG--KTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKN  177 (219)
T ss_dssp             TTBC--SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             HHHC--CCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCC--EEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhc
Confidence            6543  3445789999999999999999999999999999999  56655321                           


Q ss_pred             -CCchHHHHHHHHHhCCCeEEEEec
Q 021691          250 -RGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       250 -r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                       +..+.+.+.+.++++||....+..
T Consensus       178 ~~~~~~~~~~~~l~~aGf~~v~~~~  202 (219)
T 3dlc_A          178 ISQENVERFQNVLDEIGISSYEIIL  202 (219)
T ss_dssp             SSHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred             cccCCHHHHHHHHHHcCCCeEEEEe
Confidence             122346677888999997655443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.68  E-value=8.6e-16  Score=133.25  Aligned_cols=140  Identities=17%  Similarity=0.220  Sum_probs=107.7

Q ss_pred             cCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..++++|||+||| +|..++.+++.. +.+|+++|+++.+++.+++|+..++.     ++.+...|+.... ....++||
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-----~v~~~~~d~~~~~-~~~~~~fD  125 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-----NVRLVKSNGGIIK-GVVEGTFD  125 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-----CCEEEECSSCSST-TTCCSCEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEeCCchhhh-hcccCcee
Confidence            4578999999999 999999988875 67999999999999999999999876     4566666653221 22347899


Q ss_pred             EEEEcCCCCCccc-------------------HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEE
Q 021691          211 VIVASDCTFFKEF-------------------HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       211 vIi~~d~ly~~~~-------------------~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      +|+++.+++....                   ...+++.+.++|+|||  .+++..+.+......+.+.+++.||.++.+
T Consensus       126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~  203 (230)
T 3evz_A          126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGG--KVALYLPDKEKLLNVIKERGIKLGYSVKDI  203 (230)
T ss_dssp             EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEE--EEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCe--EEEEEecccHhHHHHHHHHHHHcCCceEEE
Confidence            9999766544322                   4788999999999999  666666666677788999999999998887


Q ss_pred             eccCchhhh
Q 021691          272 ENYNAEIWK  280 (309)
Q Consensus       272 ~~~~~~~~~  280 (309)
                      +......+.
T Consensus       204 ~~~~g~~~~  212 (230)
T 3evz_A          204 KFKVGTRWR  212 (230)
T ss_dssp             EECCCC-CE
T ss_pred             EecCCCeEE
Confidence            664444443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.67  E-value=4.2e-15  Score=126.71  Aligned_cols=134  Identities=14%  Similarity=0.140  Sum_probs=104.5

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      +.......++.+|||+|||+|..++.+++..+..+|+++|.++.+++.+++|+..++.    .++.+...++.+..  ..
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~~--~~  105 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA----RNVTLVEAFAPEGL--DD  105 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC----TTEEEEECCTTTTC--TT
T ss_pred             HHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeCChhhhh--hc
Confidence            3343456678999999999999999999987778999999999999999999998876    35666666554322  12


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEE
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      .++||+|++..+.+   ....+++.+.++|+|+|  .+++. .........+.+.+++.||.++..
T Consensus       106 ~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG--~l~~~-~~~~~~~~~~~~~l~~~g~~~~~~  165 (204)
T 3e05_A          106 LPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEG--VIVLN-AVTLDTLTKAVEFLEDHGYMVEVA  165 (204)
T ss_dssp             SCCCSEEEESCCTT---CHHHHHHHHHHHCCTTC--EEEEE-ECBHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEECCCCc---CHHHHHHHHHHhcCCCe--EEEEE-ecccccHHHHHHHHHHCCCceeEE
Confidence            26799999977665   67899999999999999  44443 334456778889999999855443

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.67  E-value=1.3e-15  Score=134.04  Aligned_cols=162  Identities=15%  Similarity=0.224  Sum_probs=120.0

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      +.......++++|||+|||+|..+..+++. +..+|+++|+++.+++.+++++.       ..++.+...+...  .+..
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~--~~~~  105 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTT-------SPVVCYEQKAIED--IAIE  105 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCC-------CTTEEEEECCGGG--CCCC
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhc-------cCCeEEEEcchhh--CCCC
Confidence            334444557899999999999999998886 44499999999999999998754       1346666666543  2344


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----------------------------------
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----------------------------------  250 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------------------  250 (309)
                      .++||+|+++.++++..+...+++.+.++|+|||  .+++..+..                                   
T Consensus       106 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (253)
T 3g5l_A          106 PDAYNVVLSSLALHYIASFDDICKKVYINLKSSG--SFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSH  183 (253)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEE
T ss_pred             CCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCc--EEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEe
Confidence            5789999999999999999999999999999999  555542110                                   


Q ss_pred             ---------CchHHHHHHHHHhCCCeEEEEeccCchhhhhhhccccCCCCCCCCCCCCCcceEEEec
Q 021691          251 ---------GDSLDKFLEEIEGNHLHFSIIENYNAEIWKRHQMLMSGDESWPNYDKDHCYPFLVRIT  308 (309)
Q Consensus       251 ---------~~~~~~f~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yp~l~~~~  308 (309)
                               ..+.+.+.+.++++||.+..+.........     ..    .+.|......|.++.++
T Consensus       184 ~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~~~~-----~~----~~~~~~~~~~P~fl~~~  241 (253)
T 3g5l_A          184 FLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAPEL-----KD----LPEMQDEYRRPMMLLIS  241 (253)
T ss_dssp             ETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCCCGGG-----SS----CGGGGGGGTSCCEEEEE
T ss_pred             eccccCccEecCHHHHHHHHHHcCCeeeeeecCCCchhh-----cc----ChhHHHhhcCceEEEEE
Confidence                     017789999999999999877654433211     11    13345566788888875

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.67  E-value=9.5e-16  Score=135.95  Aligned_cols=145  Identities=21%  Similarity=0.242  Sum_probs=109.7

Q ss_pred             ccHHHHHHHHhhCcCcC-CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          117 PSEDVLAFFSLSHADMF-RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~-~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      .-+..|+.++    ... ++++|||+|||+|..++.+++..+ .+|+++|+++.+++.+++|+..|++.   .++.+...
T Consensus        35 ~d~~ll~~~~----~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~---~~v~~~~~  106 (259)
T 3lpm_A           35 IDAVLLAKFS----YLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLE---DQIEIIEY  106 (259)
T ss_dssp             HHHHHHHHHC----CCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCT---TTEEEECS
T ss_pred             HHHHHHHHHh----cCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCc---ccEEEEEC
Confidence            3356677765    333 688999999999999999888744 49999999999999999999999873   45777777


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCc--------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHH
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFK--------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLD  255 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~--------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~  255 (309)
                      |+.+.......++||+|+++.+++..                    .....+++.+.++|+++|  .+++..  +.....
T Consensus       107 D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~--~~~~~~  182 (259)
T 3lpm_A          107 DLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGG--KANFVH--RPERLL  182 (259)
T ss_dssp             CGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEE--EEEEEE--CTTTHH
T ss_pred             cHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCc--EEEEEE--cHHHHH
Confidence            66543322335789999997766554                    245679999999999999  555533  455677


Q ss_pred             HHHHHHHhCCCeEEEEec
Q 021691          256 KFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       256 ~f~~~~~~~G~~~~~~~~  273 (309)
                      ++.+.+++.||....+..
T Consensus       183 ~~~~~l~~~~~~~~~~~~  200 (259)
T 3lpm_A          183 DIIDIMRKYRLEPKRIQF  200 (259)
T ss_dssp             HHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHCCCceEEEEE
Confidence            899999999998776543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.66  E-value=2.5e-15  Score=136.79  Aligned_cols=144  Identities=15%  Similarity=0.114  Sum_probs=114.6

Q ss_pred             HHHhhCcC-cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 021691          124 FFSLSHAD-MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF  202 (309)
Q Consensus       124 ~~l~~~~~-~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~  202 (309)
                      +.+..... +.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++..+++.   .++.+...|....  
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--  179 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRID---DHVRSRVCNMLDT--  179 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTSC--
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC---CceEEEECChhcC--
Confidence            44555544 6678999999999999999988875 468999999999999999999998873   4677777766532  


Q ss_pred             CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCC---------------------chHHHHHHHH
Q 021691          203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRG---------------------DSLDKFLEEI  261 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~---------------------~~~~~f~~~~  261 (309)
                      +...++||+|++.+++++. +...+++.+.++|+|||  .+++......                     .+.+.+.+.+
T Consensus       180 ~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l  256 (312)
T 3vc1_A          180 PFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGG--RYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAM  256 (312)
T ss_dssp             CCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEE--EEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHH
T ss_pred             CCCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCc--EEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHH
Confidence            3445799999999999988 49999999999999999  5555543211                     1456788899


Q ss_pred             HhCCCeEEEEeccCc
Q 021691          262 EGNHLHFSIIENYNA  276 (309)
Q Consensus       262 ~~~G~~~~~~~~~~~  276 (309)
                      +++||.+..++.+..
T Consensus       257 ~~aGf~~~~~~~~~~  271 (312)
T 3vc1_A          257 ADNRLVPHTIVDLTP  271 (312)
T ss_dssp             HTTTEEEEEEEECHH
T ss_pred             HHCCCEEEEEEeCCH
Confidence            999999888777654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.66  E-value=3.1e-15  Score=134.12  Aligned_cols=148  Identities=14%  Similarity=0.137  Sum_probs=115.3

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      ++...+.+.+.....+.++.+|||+|||+|..+..+++..+. +|+++|+++.+++.+++++...+..   .++.+...+
T Consensus        47 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~---~~~~~~~~d  122 (287)
T 1kpg_A           47 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENL---RSKRVLLAG  122 (287)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCC---SCEEEEESC
T ss_pred             HHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCC---CCeEEEECC
Confidence            344556667777667778899999999999999998866654 9999999999999999999877662   456776666


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecCC-----------------------
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKRG-----------------------  251 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~-----------------------  251 (309)
                      +...     .++||+|++..++++.  .+...+++.+.++|+|||  .+++......                       
T Consensus       123 ~~~~-----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (287)
T 1kpg_A          123 WEQF-----DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADG--VMLLHTITGLHPKEIHERGLPMSFTFARFLKFI  195 (287)
T ss_dssp             GGGC-----CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTC--EEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHH
T ss_pred             hhhC-----CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCC--EEEEEEecCCCccccccccccccccccchhhhH
Confidence            5321     1789999999999887  688999999999999999  5555443211                       


Q ss_pred             ----------chHHHHHHHHHhCCCeEEEEeccC
Q 021691          252 ----------DSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       252 ----------~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                                .+.+.+.+.++++||.+..+....
T Consensus       196 ~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~  229 (287)
T 1kpg_A          196 VTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ  229 (287)
T ss_dssp             HHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             HheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence                      145677788999999988776543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.66  E-value=2.5e-15  Score=131.40  Aligned_cols=145  Identities=19%  Similarity=0.258  Sum_probs=115.5

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .||+...+...+.    ..++.+|||+|||+|..+..++..  ..+|+++|.++.+++.+++++..++.    .++.+..
T Consensus         6 ~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~----~~v~~~~   75 (239)
T 1xxl_A            6 HHHSLGLMIKTAE----CRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGV----ENVRFQQ   75 (239)
T ss_dssp             CHHHHHHHHHHHT----CCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTC----CSEEEEE
T ss_pred             cCCCcchHHHHhC----cCCCCEEEEEccCcCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC----CCeEEEe
Confidence            5777777776663    457899999999999999998876  35999999999999999999988876    2567777


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec-----------------------CC
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK-----------------------RG  251 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~-----------------------r~  251 (309)
                      .++..  .+..+++||+|++..++++..+...+++.+.++|+|||  .+++....                       +.
T Consensus        76 ~d~~~--~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (239)
T 1xxl_A           76 GTAES--LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDG--RFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRE  151 (239)
T ss_dssp             CBTTB--CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCC
T ss_pred             ccccc--CCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCc--EEEEEEcCCCCChhHHHHHHHHHHhccccccCC
Confidence            76643  33445789999999999999999999999999999999  55554422                       22


Q ss_pred             chHHHHHHHHHhCCCeEEEEec
Q 021691          252 DSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       252 ~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      .+...+.+.++++||....+..
T Consensus       152 ~~~~~~~~ll~~aGf~~~~~~~  173 (239)
T 1xxl_A          152 SSLSEWQAMFSANQLAYQDIQK  173 (239)
T ss_dssp             CBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCcEEEEEe
Confidence            3566788889999998766544

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.65  E-value=2.7e-15  Score=135.18  Aligned_cols=147  Identities=14%  Similarity=0.064  Sum_probs=114.5

Q ss_pred             HHHHHHHhhCc----CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          120 DVLAFFSLSHA----DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       120 ~~La~~l~~~~----~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      ..+.+.+....    .+.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...++.   .++.+...
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~  139 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGLA---DNITVKYG  139 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTCT---TTEEEEEC
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEEc
Confidence            33444444444    566889999999999999999888764 49999999999999999999888763   46777777


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------------CchHH
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------------------GDSLD  255 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------~~~~~  255 (309)
                      ++...  +..+++||+|++..++++..+...+++.+.++|+|||  .+++..+..                    ..+..
T Consensus       140 d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (297)
T 2o57_A          140 SFLEI--PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRG--VMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLG  215 (297)
T ss_dssp             CTTSC--SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHH
T ss_pred             CcccC--CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCe--EEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHH
Confidence            66543  3445789999999999998899999999999999999  555554321                    11455


Q ss_pred             HHHHHHHhCCCeEEEEecc
Q 021691          256 KFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       256 ~f~~~~~~~G~~~~~~~~~  274 (309)
                      .+.+.++++||.+..+...
T Consensus       216 ~~~~~l~~aGf~~~~~~~~  234 (297)
T 2o57_A          216 LYRSLAKECGLVTLRTFSR  234 (297)
T ss_dssp             HHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHCCCeEEEEEEC
Confidence            6778899999998776553

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.65  E-value=3e-15  Score=133.33  Aligned_cols=148  Identities=16%  Similarity=0.158  Sum_probs=115.7

Q ss_pred             cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      ....+.+++.......++++|||+|||+|..+..+++..++.+|+++|.++.+++.+++++..++..    ++.+...|.
T Consensus        21 ~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~   96 (276)
T 3mgg_A           21 QAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK----NVKFLQANI   96 (276)
T ss_dssp             --CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEECCG
T ss_pred             HHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEccc
Confidence            3456677777766677899999999999999999999877789999999999999999999988762    466666655


Q ss_pred             CCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC---------------------------
Q 021691          198 NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR---------------------------  250 (309)
Q Consensus       198 ~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---------------------------  250 (309)
                      ...  +...++||+|+++.++++..+...+++.+.++|+|||  .+++..+..                           
T Consensus        97 ~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (276)
T 3mgg_A           97 FSL--PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGG--TITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMK  172 (276)
T ss_dssp             GGC--CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccC--CCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCc--EEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcC
Confidence            432  3345789999999999999999999999999999999  555543211                           


Q ss_pred             --CchHHHHHHHHHhCCCeEEEEec
Q 021691          251 --GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       251 --~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                        ..+...+.+.++++||.+..++.
T Consensus       173 ~~~~~~~~l~~~l~~aGf~~v~~~~  197 (276)
T 3mgg_A          173 GNSLVGRQIYPLLQESGFEKIRVEP  197 (276)
T ss_dssp             CCTTGGGGHHHHHHHTTCEEEEEEE
T ss_pred             CCcchHHHHHHHHHHCCCCeEEEee
Confidence              11224566789999999776653

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.65  E-value=1.2e-15  Score=131.44  Aligned_cols=150  Identities=9%  Similarity=0.050  Sum_probs=108.3

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-CCCceEEEEeeC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-GGTTVKSMTLHW  197 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~l~w  197 (309)
                      .....+++.......++++|||+|||+|..+..+++..+..+|+++|+++.+++.+++++..+++.. ...++.+...++
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (219)
T 3jwg_A           14 NQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL   93 (219)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS
T ss_pred             hHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc
Confidence            3344444444333456889999999999999998887666799999999999999999998776521 011567766665


Q ss_pred             CCCCCCCCCCCccEEEEcCCCCCcccH--HHHHHHHHHHHhcCCCeEEEEEeecCC---------------------chH
Q 021691          198 NQDDFPYIVDTFDVIVASDCTFFKEFH--KDLARIIKFLLKKVGPSEALFFSPKRG---------------------DSL  254 (309)
Q Consensus       198 ~~~~~~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~lLk~~G~~~~ii~~~~r~---------------------~~~  254 (309)
                      ..  .+...++||+|++.+++++..+.  ..+++.+.++|+|||   +++..+...                     .+.
T Consensus        94 ~~--~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (219)
T 3jwg_A           94 VY--RDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQT---VIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTR  168 (219)
T ss_dssp             SS--CCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE---EEEEEEBGGGGGCCCCT-----GGGCCTTSBCH
T ss_pred             cc--cccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCE---EEEEccchhhhhhhcccCcccccccCceeeecH
Confidence            32  22334689999999999987744  799999999999988   444433221                     245


Q ss_pred             HHHH----HHHHhCCCeEEEEec
Q 021691          255 DKFL----EEIEGNHLHFSIIEN  273 (309)
Q Consensus       255 ~~f~----~~~~~~G~~~~~~~~  273 (309)
                      ++|.    +.++++||.++....
T Consensus       169 ~~l~~~~~~l~~~~Gf~v~~~~~  191 (219)
T 3jwg_A          169 KEFQTWAVKVAEKYGYSVRFLQI  191 (219)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCcEEEEEec
Confidence            5565    678888998876643

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.65  E-value=4.4e-15  Score=134.36  Aligned_cols=145  Identities=11%  Similarity=0.039  Sum_probs=114.3

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      ...+.+.....+.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++..+++.   .++.+...|+.+.
T Consensus        59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~  134 (302)
T 3hem_A           59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSP---RRKEVRIQGWEEF  134 (302)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCS---SCEEEEECCGGGC
T ss_pred             HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECCHHHc
Confidence            3445566666677899999999999999999998766 69999999999999999999988873   4677777766432


Q ss_pred             CCCCCCCCccEEEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeecC---------------------
Q 021691          201 DFPYIVDTFDVIVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPKR---------------------  250 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---------------------  250 (309)
                           .++||+|++..++++.         .....+++.+.++|+|||  .+++.....                     
T Consensus       135 -----~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (302)
T 3hem_A          135 -----DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDG--RMLLHTITIPDKEEAQELGLTSPMSLLRFI  207 (302)
T ss_dssp             -----CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTC--EEEEEEEECCCHHHHHHHTCCCCHHHHHHH
T ss_pred             -----CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCc--EEEEEEEeccCccchhhccccccccccchH
Confidence                 5789999999999887         445899999999999999  555544321                     


Q ss_pred             ------------CchHHHHHHHHHhCCCeEEEEeccCc
Q 021691          251 ------------GDSLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       251 ------------~~~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                                  ..+...+.+.++++||.+..++....
T Consensus       208 ~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~  245 (302)
T 3hem_A          208 KFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGA  245 (302)
T ss_dssp             HHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred             HHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence                        12345677888999999988776554

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.64  E-value=1.2e-15  Score=131.21  Aligned_cols=137  Identities=11%  Similarity=0.036  Sum_probs=101.6

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-CCCceEEEEeeCCCCCCCCCCCCc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-GGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ...++++|||+|||+|..+..+++..+..+|+++|+++.+++.+++++..+++.. ...++.+...+...  .+...++|
T Consensus        26 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~f  103 (217)
T 3jwh_A           26 KQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY--QDKRFHGY  103 (217)
T ss_dssp             HHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS--CCGGGCSC
T ss_pred             HhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc--ccccCCCc
Confidence            3346789999999999999999887666799999999999999999988776521 01156676666532  22234689


Q ss_pred             cEEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEeecC---------------------CchHHHHH----HHHH
Q 021691          210 DVIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSPKR---------------------GDSLDKFL----EEIE  262 (309)
Q Consensus       210 DvIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~~r---------------------~~~~~~f~----~~~~  262 (309)
                      |+|++..++++..  ....+++.+.++|+|||   +++..+..                     ..+.++|.    +.++
T Consensus       104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG---~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  180 (217)
T 3jwh_A          104 DAATVIEVIEHLDLSRLGAFERVLFEFAQPKI---VIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITE  180 (217)
T ss_dssp             SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE---EEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHH
T ss_pred             CEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCE---EEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHH
Confidence            9999999999876  44899999999999998   33333221                     12445555    7788


Q ss_pred             hCCCeEEEEe
Q 021691          263 GNHLHFSIIE  272 (309)
Q Consensus       263 ~~G~~~~~~~  272 (309)
                      ++||.++...
T Consensus       181 ~~Gf~v~~~~  190 (217)
T 3jwh_A          181 RFAYNVQFQP  190 (217)
T ss_dssp             HSSEEEEECC
T ss_pred             HcCceEEEEe
Confidence            8899886543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.63  E-value=4.5e-15  Score=131.19  Aligned_cols=132  Identities=15%  Similarity=0.201  Sum_probs=104.6

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..+++..  .+|+++|.++.|++.+++++..++.    .++.+...|...  .+..+++||+
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~----~~v~~~~~d~~~--l~~~~~~fD~  106 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGH----QQVEYVQGDAEQ--MPFTDERFHI  106 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEECCC-C--CCSCTTCEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCC----CceEEEEecHHh--CCCCCCCEEE
Confidence            3468899999999999999988763  4999999999999999999988776    246666666543  3344578999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec-----------------------CCchHHHHHHHHHhCCCeE
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK-----------------------RGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~-----------------------r~~~~~~f~~~~~~~G~~~  268 (309)
                      |+++.++++..+...+++.+.++|+|||  .+++....                       +..+...+.+.++++||.+
T Consensus       107 V~~~~~l~~~~d~~~~l~~~~r~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  184 (260)
T 1vl5_A          107 VTCRIAAHHFPNPASFVSEAYRVLKKGG--QLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL  184 (260)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEE
T ss_pred             EEEhhhhHhcCCHHHHHHHHHHHcCCCC--EEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeE
Confidence            9999999999999999999999999999  55554321                       1234567788889999987


Q ss_pred             EEEec
Q 021691          269 SIIEN  273 (309)
Q Consensus       269 ~~~~~  273 (309)
                      ..+..
T Consensus       185 ~~~~~  189 (260)
T 1vl5_A          185 EELHC  189 (260)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.63  E-value=3.4e-15  Score=123.92  Aligned_cols=138  Identities=12%  Similarity=-0.003  Sum_probs=102.9

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      ..+.......++.+|||+|||+|..++.+++..++.+|+++|+++.+++.+++++..++..   .++ ....+... ..+
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~-~~~~d~~~-~~~   89 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS---DRI-AVQQGAPR-AFD   89 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT---TSE-EEECCTTG-GGG
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC---CCE-EEecchHh-hhh
Confidence            3444444556788999999999999999998877889999999999999999999988763   245 44443321 222


Q ss_pred             CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      ...++||+|+++.++++    ..+++.+.++|+|+|  .+++ ..........+.+.+++.|+.+..+..
T Consensus        90 ~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG--~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (178)
T 3hm2_A           90 DVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGG--RLVA-NAVTVESEQMLWALRKQFGGTISSFAI  152 (178)
T ss_dssp             GCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTC--EEEE-EECSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             ccCCCCCEEEECCcccH----HHHHHHHHHhcCCCC--EEEE-EeeccccHHHHHHHHHHcCCeeEEEEe
Confidence            22378999999888877    678999999999999  4444 444445667788888888888766544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.61  E-value=1.7e-14  Score=125.27  Aligned_cols=105  Identities=17%  Similarity=0.269  Sum_probs=85.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..+++..++.+|+++|.++.+++.+++++..++      ++.+...|......  . ++||+
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~d~~~~~~--~-~~fD~  112 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL------KVKYIEADYSKYDF--E-EKYDM  112 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT------TEEEEESCTTTCCC--C-SCEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC------CEEEEeCchhccCC--C-CCceE
Confidence            457889999999999999999998878899999999999999998865432      46666666544332  2 78999


Q ss_pred             EEEcCCCCCcccHH--HHHHHHHHHHhcCCCeEEEEEe
Q 021691          212 IVASDCTFFKEFHK--DLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       212 Ii~~d~ly~~~~~~--~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |++..++++..+..  .+++.+.++|+|||  .+++..
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~  148 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILKESG--IFINAD  148 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEE
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCc--EEEEEE
Confidence            99999999876554  59999999999999  566554

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.61  E-value=8.9e-15  Score=121.54  Aligned_cols=139  Identities=12%  Similarity=0.111  Sum_probs=107.2

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      +....+..++.......++.+|||+|||+|..++.+++  ++.+|+++|.++.+++.+++++..++.    .++.+...+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~d   91 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNI----KNCQIIKGR   91 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTC----CSEEEEESC
T ss_pred             cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCC----CcEEEEECC
Confidence            33455555565555566788999999999999999877  578999999999999999999998876    346776666


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      +.. .  ...++||+|+++.+    .....+++.+.++  ++|  .+++ ..........+.+.+++.|+.++.+..
T Consensus        92 ~~~-~--~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG--~l~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~  156 (183)
T 2yxd_A           92 AED-V--LDKLEFNKAFIGGT----KNIEKIIEILDKK--KIN--HIVA-NTIVLENAAKIINEFESRGYNVDAVNV  156 (183)
T ss_dssp             HHH-H--GGGCCCSEEEECSC----SCHHHHHHHHHHT--TCC--EEEE-EESCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccc-c--ccCCCCcEEEECCc----ccHHHHHHHHhhC--CCC--EEEE-EecccccHHHHHHHHHHcCCeEEEEEe
Confidence            543 1  22368999999877    6678899999998  888  4444 444556677899999999998876643

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.61  E-value=1.4e-14  Score=131.97  Aligned_cols=146  Identities=12%  Similarity=0.078  Sum_probs=113.1

Q ss_pred             cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      +.......+.......++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++..+++.   .++.+...++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~  149 (318)
T 2fk8_A           74 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTN---RSRQVLLQGW  149 (318)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCS---SCEEEEESCG
T ss_pred             HHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECCh
Confidence            4455666677666677899999999999999999888764 59999999999999999999887763   3466666655


Q ss_pred             CCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecCC------------------------
Q 021691          198 NQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKRG------------------------  251 (309)
Q Consensus       198 ~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~------------------------  251 (309)
                      ...     +++||+|++..++++.  .+...+++.+.++|+|||  .+++..+...                        
T Consensus       150 ~~~-----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (318)
T 2fk8_A          150 EDF-----AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADG--RMTVQSSVSYHPYEMAARGKKLSFETARFIKFIV  222 (318)
T ss_dssp             GGC-----CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTC--EEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHC-----CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCc--EEEEEEeccCCchhhhhccccccccccchhhHHH
Confidence            322     2689999999999887  788999999999999999  5555443221                        


Q ss_pred             ---------chHHHHHHHHHhCCCeEEEEecc
Q 021691          252 ---------DSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       252 ---------~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                               .+.+.+.+.++++||.+..++..
T Consensus       223 ~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~  254 (318)
T 2fk8_A          223 TEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSL  254 (318)
T ss_dssp             HHTSTTCCCCCHHHHHHHHHHTTCBCCCCEEC
T ss_pred             HhcCCCCcCCCHHHHHHHHHhCCCEEEEEEec
Confidence                     13556778888999987665543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.60  E-value=1.5e-14  Score=129.65  Aligned_cols=132  Identities=12%  Similarity=0.129  Sum_probs=105.8

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++..+++.   .++.+...++.... ....++||+|+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~-~~~~~~fD~v~  141 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVS---DNMQFIHCAAQDVA-SHLETPVDLIL  141 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCG---GGEEEEESCGGGTG-GGCSSCEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCC---cceEEEEcCHHHhh-hhcCCCceEEE
Confidence            4679999999999999998887  569999999999999999999887762   46777777665332 13457899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec--------------------------------CCchHHHHHHHH
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK--------------------------------RGDSLDKFLEEI  261 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~--------------------------------r~~~~~~f~~~~  261 (309)
                      +..++++..+...+++.+.++|+|||  .+++..+.                                +..+.+++.+.+
T Consensus       142 ~~~~l~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  219 (285)
T 4htf_A          142 FHAVLEWVADPRSVLQTLWSVLRPGG--VLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWL  219 (285)
T ss_dssp             EESCGGGCSCHHHHHHHHHHTEEEEE--EEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHH
T ss_pred             ECchhhcccCHHHHHHHHHHHcCCCe--EEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHH
Confidence            99999999999999999999999999  55554421                                223457888999


Q ss_pred             HhCCCeEEEEec
Q 021691          262 EGNHLHFSIIEN  273 (309)
Q Consensus       262 ~~~G~~~~~~~~  273 (309)
                      +++||.+..+..
T Consensus       220 ~~aGf~v~~~~~  231 (285)
T 4htf_A          220 EEAGWQIMGKTG  231 (285)
T ss_dssp             HHTTCEEEEEEE
T ss_pred             HHCCCceeeeee
Confidence            999999876654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.60  E-value=1.2e-14  Score=129.20  Aligned_cols=108  Identities=19%  Similarity=0.240  Sum_probs=86.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC--CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE--ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~--~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      +.+|.+|||||||+|..++.+++..+  +.+|+|+|.++.|++.+++++...+..   .++++...|..+.    +.++|
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~---~~v~~~~~D~~~~----~~~~~  140 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP---TPVDVIEGDIRDI----AIENA  140 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS---SCEEEEESCTTTC----CCCSE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC---ceEEEeecccccc----ccccc
Confidence            34788999999999999999988753  458999999999999999999877652   4677766654432    23569


Q ss_pred             cEEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          210 DVIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       210 DvIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      |+|+++.++++..  +...+++.++++|+|||  .+++...
T Consensus       141 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG--~lii~e~  179 (261)
T 4gek_A          141 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGG--ALVLSEK  179 (261)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEEE
T ss_pred             ccceeeeeeeecCchhHhHHHHHHHHHcCCCc--EEEEEec
Confidence            9999999988753  45679999999999999  6666554

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.60  E-value=7.1e-15  Score=128.54  Aligned_cols=131  Identities=15%  Similarity=0.022  Sum_probs=101.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++..++.    .++.+...++...  +...++||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~d~~~~--~~~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGK----RVRNYFCCGLQDF--TPEPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGG----GEEEEEECCGGGC--CCCSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCC----ceEEEEEcChhhc--CCCCCCEEEEE
Confidence            58899999999999999877764 56999999999999999998876642    2456666655432  23346899999


Q ss_pred             EcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecC-------------CchHHHHHHHHHhCCCeEEEEec
Q 021691          214 ASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKR-------------GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       214 ~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r-------------~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      +..++++..+  ...+++.+.++|+|||  .+++..+..             ..+.+++.+.++++||.+.....
T Consensus       152 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  224 (241)
T 2ex4_A          152 IQWVIGHLTDQHLAEFLRRCKGSLRPNG--IIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  224 (241)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCe--EEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence            9999988766  5589999999999999  565544321             12678899999999999876653

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.60  E-value=2.6e-14  Score=122.85  Aligned_cols=132  Identities=14%  Similarity=0.079  Sum_probs=100.2

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||||||+|..++.+|+..+..+|+++|+++.+++.+++|+..+++    .++.+...++.........++||+|+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~D~i~  116 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV----PNIKLLWVDGSDLTDYFEDGEIDRLY  116 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----SSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC----CCEEEEeCCHHHHHhhcCCCCCCEEE
Confidence            47899999999999999999988888999999999999999999998876    35777777765422113356899999


Q ss_pred             EcCCCCCcc--------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          214 ASDCTFFKE--------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       214 ~~d~ly~~~--------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      ++.+..+..        ....+++.+.++|++||  .+++.+ ......+...+.+.+.||.+..+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~-~~~~~~~~~~~~~~~~g~~~~~~~  180 (214)
T 1yzh_A          117 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENG--EIHFKT-DNRGLFEYSLVSFSQYGMKLNGVW  180 (214)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTC--EEEEEE-SCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             EECCCCccccchhhhccCCHHHHHHHHHHcCCCc--EEEEEe-CCHHHHHHHHHHHHHCCCeeeecc
Confidence            975543221        23689999999999999  444443 332344566778888899876554

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.60  E-value=3e-15  Score=126.15  Aligned_cols=129  Identities=13%  Similarity=0.058  Sum_probs=93.4

Q ss_pred             ecccHHHHHHHHhhCcC---cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceE
Q 021691          115 HWPSEDVLAFFSLSHAD---MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVK  191 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~---~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~  191 (309)
                      .+|....+.+.+.....   ..++++|||+|||+|..++.+++. +..+|+++|.++.+++.+++|+..+++    .+++
T Consensus        22 ~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~v~   96 (189)
T 3p9n_A           22 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGL----SGAT   96 (189)
T ss_dssp             C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTC----SCEE
T ss_pred             CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCC----CceE
Confidence            45666655555544322   157899999999999999987764 667999999999999999999999886    3566


Q ss_pred             EEEeeCCCCCCCCCCCCccEEEEcCCCCCc-ccHHHHHHHHHH--HHhcCCCeEEEEEeecC
Q 021691          192 SMTLHWNQDDFPYIVDTFDVIVASDCTFFK-EFHKDLARIIKF--LLKKVGPSEALFFSPKR  250 (309)
Q Consensus       192 ~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~-~~~~~ll~~l~~--lLk~~G~~~~ii~~~~r  250 (309)
                      +...|+.+.......++||+|+++.++++. +....+++.+.+  +|+|+|  .+++....+
T Consensus        97 ~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG--~l~~~~~~~  156 (189)
T 3p9n_A           97 LRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGT--VAVVERATT  156 (189)
T ss_dssp             EEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTC--EEEEEEETT
T ss_pred             EEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCe--EEEEEecCC
Confidence            766655432111224789999997665543 778899999999  999999  565555443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.60  E-value=1.8e-14  Score=129.26  Aligned_cols=120  Identities=14%  Similarity=0.238  Sum_probs=95.8

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      ...+...+.......++++|||+|||+|..+..+++..+ +.+|+++|+++.+++.+++++..++.     ++.+...|.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~v~~~~~d~   81 (284)
T 3gu3_A            7 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-----DSEFLEGDA   81 (284)
T ss_dssp             HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-----EEEEEESCT
T ss_pred             hHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-----ceEEEEcch
Confidence            344444444444566889999999999999999988876 47999999999999999999877654     567777666


Q ss_pred             CCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          198 NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       198 ~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ....  . .++||+|++..++++..+...+++.+.++|+|||  .+++..+
T Consensus        82 ~~~~--~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG--~l~~~~~  127 (284)
T 3gu3_A           82 TEIE--L-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGG--KIICFEP  127 (284)
T ss_dssp             TTCC--C-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEE--EEEEEEC
T ss_pred             hhcC--c-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCC--EEEEEec
Confidence            5432  2 4689999999999999999999999999999999  5665544

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.60  E-value=3.4e-14  Score=121.57  Aligned_cols=133  Identities=10%  Similarity=0.025  Sum_probs=102.1

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      +.......++.+|||+|||+|..++.+|+.  +.+|+++|+++++++.+++|++.++..   .++.+...|..+..  ..
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~~--~~  119 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLS---PRMRAVQGTAPAAL--AD  119 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCTTGGG--TT
T ss_pred             HHHhcCCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCC---CCEEEEeCchhhhc--cc
Confidence            333335567899999999999999999887  679999999999999999999998873   25676666544311  12


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      ..+||+|++...+    ..+ +++.+.++|+|+|  . +++..........+.+.+++.|+.+..+..
T Consensus       120 ~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG--~-lv~~~~~~~~~~~~~~~l~~~g~~i~~i~~  179 (204)
T 3njr_A          120 LPLPEAVFIGGGG----SQA-LYDRLWEWLAPGT--R-IVANAVTLESETLLTQLHARHGGQLLRIDI  179 (204)
T ss_dssp             SCCCSEEEECSCC----CHH-HHHHHHHHSCTTC--E-EEEEECSHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             CCCCCEEEECCcc----cHH-HHHHHHHhcCCCc--E-EEEEecCcccHHHHHHHHHhCCCcEEEEEe
Confidence            2579999986633    455 9999999999999  4 444444556778889999999988877654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.59  E-value=1.6e-14  Score=121.04  Aligned_cols=144  Identities=9%  Similarity=-0.006  Sum_probs=95.6

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..++..+... .+.+|.+|||+|||+|..++.+|+.  +.+|+++|+++.+++.+++++..+++    .++++...+...
T Consensus         9 ~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~----~~v~~~~~~~~~   81 (185)
T 3mti_A            9 IHMSHDFLAE-VLDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGI----ENTELILDGHEN   81 (185)
T ss_dssp             HHHHHHHHHT-TCCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTC----CCEEEEESCGGG
T ss_pred             HHHHHHHHHH-hCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEeCcHHH
Confidence            3444444432 3457899999999999999998886  67999999999999999999998876    245555532221


Q ss_pred             CCCCCCCCCccEEEEcCCCC---------CcccHHHHHHHHHHHHhcCCCeEEEEEeecC----C---chHHHHHHHHHh
Q 021691          200 DDFPYIVDTFDVIVASDCTF---------FKEFHKDLARIIKFLLKKVGPSEALFFSPKR----G---DSLDKFLEEIEG  263 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly---------~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----~---~~~~~f~~~~~~  263 (309)
                      . .....++||+|+++....         .......+++.+.++|+|||  .+++.....    .   .....+.+.+..
T Consensus        82 l-~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~l~~  158 (185)
T 3mti_A           82 L-DHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGG--RLAIMIYYGHDGGDMEKDAVLEYVIGLDQ  158 (185)
T ss_dssp             G-GGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEE--EEEEEEC------CHHHHHHHHHHHHSCT
T ss_pred             H-HhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCc--EEEEEEeCCCCCCHHHHHHHHHHHHhCCC
Confidence            1 112356899999863222         22455678899999999999  454444321    1   123345555555


Q ss_pred             CCCeEEEEec
Q 021691          264 NHLHFSIIEN  273 (309)
Q Consensus       264 ~G~~~~~~~~  273 (309)
                      .+|.+.....
T Consensus       159 ~~~~~~~~~~  168 (185)
T 3mti_A          159 RVFTAMLYQP  168 (185)
T ss_dssp             TTEEEEEEEE
T ss_pred             ceEEEEEehh
Confidence            6676655443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.59  E-value=3.8e-14  Score=121.79  Aligned_cols=125  Identities=14%  Similarity=0.076  Sum_probs=96.8

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.+++++.        .++.+...+....  +.. ++||+|+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~~--~~~-~~fD~v~  111 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLSF--EVP-TSIDTIV  111 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSSC--CCC-SCCSEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhhc--CCC-CCeEEEE
Confidence            6789999999999999998886  5699999999999999998754        1334444444432  222 7899999


Q ss_pred             EcCCCCCcccHHH--HHHHHHHHHhcCCCeEEEEEeecCC-----------------------------chHHHHHHHHH
Q 021691          214 ASDCTFFKEFHKD--LARIIKFLLKKVGPSEALFFSPKRG-----------------------------DSLDKFLEEIE  262 (309)
Q Consensus       214 ~~d~ly~~~~~~~--ll~~l~~lLk~~G~~~~ii~~~~r~-----------------------------~~~~~f~~~~~  262 (309)
                      +..++++..+...  +++.+.++|+|||  .+++..+...                             .+.+.+.+.++
T Consensus       112 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  189 (220)
T 3hnr_A          112 STYAFHHLTDDEKNVAIAKYSQLLNKGG--KIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE  189 (220)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHSCTTC--EEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHH
T ss_pred             ECcchhcCChHHHHHHHHHHHHhcCCCC--EEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHH
Confidence            9999999887766  9999999999999  6666543211                             13467778899


Q ss_pred             hCCCeEEEEec
Q 021691          263 GNHLHFSIIEN  273 (309)
Q Consensus       263 ~~G~~~~~~~~  273 (309)
                      ++||.+.....
T Consensus       190 ~aGf~v~~~~~  200 (220)
T 3hnr_A          190 NNGFHVTFTRL  200 (220)
T ss_dssp             HTTEEEEEEEC
T ss_pred             HCCCEEEEeec
Confidence            99998876654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.59  E-value=1.9e-14  Score=125.19  Aligned_cols=144  Identities=15%  Similarity=0.051  Sum_probs=109.6

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+..++...  ..++.+|||+|||+|..+..+++  .+.+|+++|+++.+++.+++++..++.   ..++.+...|+..
T Consensus        54 ~~l~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~  126 (235)
T 3lcc_A           54 PLIVHLVDTS--SLPLGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPK---AEYFSFVKEDVFT  126 (235)
T ss_dssp             HHHHHHHHTT--CSCCEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGG---GGGEEEECCCTTT
T ss_pred             HHHHHHHHhc--CCCCCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCC---CcceEEEECchhc
Confidence            4556665443  23446999999999999998766  367899999999999999999876543   2457777776654


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEeecC---------CchHHHHHHHHHhCCCeE
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSPKR---------GDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~~r---------~~~~~~f~~~~~~~G~~~  268 (309)
                      ..   ...+||+|++..++++..  +...+++.+.++|+|||  .+++.....         ..+.+.+.+.++++||.+
T Consensus       127 ~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  201 (235)
T 3lcc_A          127 WR---PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDG--ELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKA  201 (235)
T ss_dssp             CC---CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEE--EEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEE
T ss_pred             CC---CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCc--EEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeE
Confidence            32   345899999999998866  88999999999999999  555443211         235688999999999998


Q ss_pred             EEEeccC
Q 021691          269 SIIENYN  275 (309)
Q Consensus       269 ~~~~~~~  275 (309)
                      ..++...
T Consensus       202 ~~~~~~~  208 (235)
T 3lcc_A          202 VSVEENP  208 (235)
T ss_dssp             EEEEECT
T ss_pred             EEEEecC
Confidence            7776544

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.59  E-value=2.6e-14  Score=123.56  Aligned_cols=134  Identities=11%  Similarity=0.089  Sum_probs=105.0

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-CCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-GGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ++++|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++..++... ...++.+...+...  .+...++||+|
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~v  105 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS--LSFHDSSFDFA  105 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS--CCSCTTCEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc--cCCCCCceeEE
Confidence            6789999999999999998887  5699999999999999999988776531 12245666555543  23446789999


Q ss_pred             EEcCCCCCcccHH---HHHHHHHHHHhcCCCeEEEEEeec---------------------------------------C
Q 021691          213 VASDCTFFKEFHK---DLARIIKFLLKKVGPSEALFFSPK---------------------------------------R  250 (309)
Q Consensus       213 i~~d~ly~~~~~~---~ll~~l~~lLk~~G~~~~ii~~~~---------------------------------------r  250 (309)
                      +++.++++..+..   .+++.+.++|+|||  .+++....                                       +
T Consensus       106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (235)
T 3sm3_A          106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGA--YLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAH  183 (235)
T ss_dssp             EEESCGGGCCCHHHHHHHHHHHHHHEEEEE--EEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred             EEcchhhcCCCHHHHHHHHHHHHHHcCCCe--EEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence            9999999877766   89999999999999  55554331                                       2


Q ss_pred             CchHHHHHHHHHhCCCeEEEEec
Q 021691          251 GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       251 ~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      ..+.+++.+.++++||.+..+..
T Consensus       184 ~~~~~~l~~ll~~aGf~~~~~~~  206 (235)
T 3sm3_A          184 HFTEKELVFLLTDCRFEIDYFRV  206 (235)
T ss_dssp             CBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             eCCHHHHHHHHHHcCCEEEEEEe
Confidence            34678899999999999877654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.58  E-value=1.3e-14  Score=124.19  Aligned_cols=136  Identities=19%  Similarity=0.221  Sum_probs=102.4

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+..++..   +.++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++   +.       .+...+...
T Consensus        32 ~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~~-------~~~~~d~~~   96 (211)
T 3e23_A           32 ATLTKFLGE---LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL---GR-------PVRTMLFHQ   96 (211)
T ss_dssp             HHHHHHHTT---SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---TS-------CCEECCGGG
T ss_pred             HHHHHHHHh---cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc---CC-------ceEEeeecc
Confidence            445555433   336889999999999999998886  569999999999999999886   22       122233222


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEeecC-------------CchHHHHHHHHHhC
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSPKR-------------GDSLDKFLEEIEGN  264 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~~r-------------~~~~~~f~~~~~~~  264 (309)
                      .  + ..++||+|+++.++++..  +...+++.+.++|+|||  .+++..+..             ..+.+.+.+.++++
T Consensus        97 ~--~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  171 (211)
T 3e23_A           97 L--D-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGG--LFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEA  171 (211)
T ss_dssp             C--C-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHH
T ss_pred             C--C-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCc--EEEEEEcCCCcccccccchhccCCCHHHHHHHHHhC
Confidence            2  2 457899999999998876  78899999999999999  555544322             23678899999999


Q ss_pred             C-CeEEEEeccC
Q 021691          265 H-LHFSIIENYN  275 (309)
Q Consensus       265 G-~~~~~~~~~~  275 (309)
                      | |.+..+....
T Consensus       172 G~f~~~~~~~~~  183 (211)
T 3e23_A          172 GTWASVAVESSE  183 (211)
T ss_dssp             CCCSEEEEEEEE
T ss_pred             CCcEEEEEEecc
Confidence            9 9987765533

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.58  E-value=2e-14  Score=128.98  Aligned_cols=134  Identities=13%  Similarity=0.176  Sum_probs=101.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|++|||+|||+|..++.+|+.. +.+|+++|.++.+++.+++|+..|++.   ..+.+...|..+...   ..+||+|
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~-~~~V~~vD~s~~~~~~a~~n~~~n~~~---~~v~~~~~D~~~~~~---~~~fD~V  196 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVE---DRMSAYNMDNRDFPG---ENIADRI  196 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCTTTCCC---CSCEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHcCCC---ceEEEEECCHHHhcc---cCCccEE
Confidence            358999999999999999988873 338999999999999999999999884   346666665543322   5789999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----CchHHHHHHHHHhCCCeEEE-----EeccCchhh
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----GDSLDKFLEEIEGNHLHFSI-----IENYNAEIW  279 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----~~~~~~f~~~~~~~G~~~~~-----~~~~~~~~~  279 (309)
                      ++..+ +.   ...++..+.++|+|||  .+++.+...     ....+.+.+.+++.|+.++.     +..+.+..|
T Consensus       197 i~~~p-~~---~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~~v~~~~p~~~  267 (278)
T 2frn_A          197 LMGYV-VR---THEFIPKALSIAKDGA--IIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVW  267 (278)
T ss_dssp             EECCC-SS---GGGGHHHHHHHEEEEE--EEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEE
T ss_pred             EECCc-hh---HHHHHHHHHHHCCCCe--EEEEEEeeccccccccHHHHHHHHHHHcCCeeEEeeeEEEEecCCCce
Confidence            99533 33   3567888999999999  555544432     45667888899999999877     455555444

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.58  E-value=3.9e-14  Score=120.25  Aligned_cols=137  Identities=9%  Similarity=0.034  Sum_probs=104.6

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+..++...     +.+|||+|||+|..+..++..  +.+|+++|.++.+++.++++.         .++.+...++..
T Consensus        32 ~~l~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~   95 (203)
T 3h2b_A           32 VLIEPWATGV-----DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH---------PSVTFHHGTITD   95 (203)
T ss_dssp             HHHHHHHHHC-----CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC---------TTSEEECCCGGG
T ss_pred             HHHHHHhccC-----CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC---------CCCeEEeCcccc
Confidence            3455554332     789999999999999998886  559999999999999998862         134555554433


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEeecC--------------CchHHHHHHHHHh
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSPKR--------------GDSLDKFLEEIEG  263 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------~~~~~~f~~~~~~  263 (309)
                        .+...++||+|++..++++..  +...+++.+.++|+|||  .+++.....              ..+.+.+.+.+++
T Consensus        96 --~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  171 (203)
T 3h2b_A           96 --LSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGG--GLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALET  171 (203)
T ss_dssp             --GGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEE--EEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHH
T ss_pred             --cccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCc--EEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHH
Confidence              223457899999999999875  88999999999999999  555544322              2357889999999


Q ss_pred             CCCeEEEEeccCc
Q 021691          264 NHLHFSIIENYNA  276 (309)
Q Consensus       264 ~G~~~~~~~~~~~  276 (309)
                      +||.+..+.....
T Consensus       172 ~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          172 AGFQVTSSHWDPR  184 (203)
T ss_dssp             TTEEEEEEEECTT
T ss_pred             CCCcEEEEEecCC
Confidence            9999987776544

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.58  E-value=4.8e-14  Score=120.64  Aligned_cols=127  Identities=15%  Similarity=0.040  Sum_probs=99.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.+++    ++.    .++.+...|....   ...++||+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~----~~~~~~~~d~~~~---~~~~~~D~  110 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGL----DNVEFRQQDLFDW---TPDRQWDA  110 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCC----TTEEEEECCTTSC---CCSSCEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCC----CCeEEEecccccC---CCCCceeE
Confidence            456789999999999999998887  5699999999999999987    332    3567776665433   34678999


Q ss_pred             EEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecC--------------------------------CchHHHH
Q 021691          212 IVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKR--------------------------------GDSLDKF  257 (309)
Q Consensus       212 Ii~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------------------~~~~~~f  257 (309)
                      |+++.++++..+  ...+++.+.++|+|||  .+++....+                                ..+.+++
T Consensus       111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (218)
T 3ou2_A          111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGG--VVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAEL  188 (218)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHH
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCe--EEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHH
Confidence            999999998776  4899999999999999  555543311                                1256778


Q ss_pred             HHHHHhCCCeEEEEec
Q 021691          258 LEEIEGNHLHFSIIEN  273 (309)
Q Consensus       258 ~~~~~~~G~~~~~~~~  273 (309)
                      .+.++++||.++..+.
T Consensus       189 ~~~l~~aGf~v~~~~~  204 (218)
T 3ou2_A          189 TERLTALGWSCSVDEV  204 (218)
T ss_dssp             HHHHHHTTEEEEEEEE
T ss_pred             HHHHHHCCCEEEeeec
Confidence            8899999999766554

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.57  E-value=3.1e-14  Score=126.56  Aligned_cols=147  Identities=13%  Similarity=0.045  Sum_probs=109.4

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHH------HHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQ------VVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~------~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      ...+.....+.++++|||+|||+|..+..+++..+ ..+|+++|.++.      +++.+++++..++..   .++.+...
T Consensus        32 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~---~~v~~~~~  108 (275)
T 3bkx_A           32 RLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG---DRLTVHFN  108 (275)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG---GGEEEECS
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC---CceEEEEC
Confidence            33344444566889999999999999999998753 379999999997      999999999887652   35677666


Q ss_pred             e-CCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC------------------------
Q 021691          196 H-WNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR------------------------  250 (309)
Q Consensus       196 ~-w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r------------------------  250 (309)
                      + +.....+...++||+|++..++++..+...+++.++.++++||  .+++.....                        
T Consensus       109 d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (275)
T 3bkx_A          109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCD--HVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIA  186 (275)
T ss_dssp             CCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCS--EEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHS
T ss_pred             ChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCC--EEEEEEecCCCCchhhhhHHHHHHHHHHHhhcc
Confidence            5 3233333345789999999999998888888888888888899  555543211                        


Q ss_pred             ---------CchHHHHHHHHHhCCCeEEEEecc
Q 021691          251 ---------GDSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       251 ---------~~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                               ..+...+.+.++++||.+...+.+
T Consensus       187 ~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          187 PSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             CCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             ccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence                     124456778888999998776554

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.57  E-value=2.3e-14  Score=134.25  Aligned_cols=136  Identities=14%  Similarity=0.116  Sum_probs=106.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCC----CCCCceEEEEeeCCCCC-C---
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGA----FGGTTVKSMTLHWNQDD-F---  202 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~----~~~~~v~~~~l~w~~~~-~---  202 (309)
                      ..++.+|||+|||+|..++.+++.. +..+|+++|+++.+++.+++++..+...    ....++.+...++.... .   
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            4578999999999999999998876 4679999999999999999998876210    11246777777665431 1   


Q ss_pred             CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC---------------------CchHHHHHHHH
Q 021691          203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR---------------------GDSLDKFLEEI  261 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---------------------~~~~~~f~~~~  261 (309)
                      +...++||+|+++.++++..+...+++.+.++|+|||  .+++.....                     ..+.+.+.+.+
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  238 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGG--ELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLV  238 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHH
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCC--EEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHH
Confidence            3456789999999999999999999999999999999  555544221                     13457889999


Q ss_pred             HhCCCeEE
Q 021691          262 EGNHLHFS  269 (309)
Q Consensus       262 ~~~G~~~~  269 (309)
                      +++||...
T Consensus       239 ~~aGF~~v  246 (383)
T 4fsd_A          239 AEAGFRDV  246 (383)
T ss_dssp             HHTTCCCE
T ss_pred             HHCCCceE
Confidence            99999754

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.57  E-value=3.8e-14  Score=118.64  Aligned_cols=131  Identities=15%  Similarity=0.238  Sum_probs=98.4

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      +.+.......++++|||+|||+|..+..+++.  +.+|+++|.++.+++.+++++..++..  ..++.+...++...   
T Consensus        42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~--~~~~~~~~~d~~~~---  114 (194)
T 1dus_A           42 KILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLD--NYDIRVVHSDLYEN---  114 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCT--TSCEEEEECSTTTT---
T ss_pred             HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCC--ccceEEEECchhcc---
Confidence            33333334457889999999999999998876  679999999999999999999988762  11377777766542   


Q ss_pred             CCCCCccEEEEcCCCCC-cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691          204 YIVDTFDVIVASDCTFF-KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN  264 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~-~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~  264 (309)
                      ...++||+|+++.++++ ......+++.+.++|+++|  .+++..+.. .....+.+.+++.
T Consensus       115 ~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG--~l~~~~~~~-~~~~~~~~~l~~~  173 (194)
T 1dus_A          115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNG--EIWVVIQTK-QGAKSLAKYMKDV  173 (194)
T ss_dssp             CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEE--EEEEEEEST-HHHHHHHHHHHHH
T ss_pred             cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCC--EEEEEECCC-CChHHHHHHHHHH
Confidence            22568999999877666 4678899999999999999  555555544 3445566666665

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.57  E-value=3.1e-14  Score=125.32  Aligned_cols=132  Identities=10%  Similarity=0.043  Sum_probs=102.4

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      +.......++.+|||+|||+|..+..+++..++.+|+++|.++.+++.++++     .    .++.+...|....  + .
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~----~~~~~~~~d~~~~--~-~   92 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----L----PNTNFGKADLATW--K-P   92 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----S----TTSEEEECCTTTC--C-C
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----C----CCcEEEECChhhc--C-c
Confidence            4444455678899999999999999999887778999999999999999887     1    2356666665432  2 4


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-------------------------------CchH
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-------------------------------GDSL  254 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-------------------------------~~~~  254 (309)
                      .++||+|+++.++++..+...+++.+.++|+|||  .+++..+..                               ..+.
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (259)
T 2p35_A           93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLESGG--VLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPP  170 (259)
T ss_dssp             SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEE--EEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCH
T ss_pred             cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCe--EEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCH
Confidence            5789999999999999999999999999999999  555544311                               1244


Q ss_pred             HHHHHHHHhCCCeEEEE
Q 021691          255 DKFLEEIEGNHLHFSII  271 (309)
Q Consensus       255 ~~f~~~~~~~G~~~~~~  271 (309)
                      +.+.+.++++||.+...
T Consensus       171 ~~~~~~l~~aGf~v~~~  187 (259)
T 2p35_A          171 SDYFNALSPKSSRVDVW  187 (259)
T ss_dssp             HHHHHHHGGGEEEEEEE
T ss_pred             HHHHHHHHhcCCceEEE
Confidence            56778889999976543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.57  E-value=1.4e-14  Score=126.13  Aligned_cols=126  Identities=15%  Similarity=0.188  Sum_probs=99.8

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.++++...        ++.+...+....   ..+++||+|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~--------~v~~~~~d~~~~---~~~~~fD~v  107 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD--------GITYIHSRFEDA---QLPRRYDNI  107 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS--------CEEEEESCGGGC---CCSSCEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC--------CeEEEEccHHHc---CcCCcccEE
Confidence            47789999999999999998876  34899999999999999887432        355555554332   245789999


Q ss_pred             EEcCCCCCcccHHHHHHHHH-HHHhcCCCeEEEEEeecC-------------------------------CchHHHHHHH
Q 021691          213 VASDCTFFKEFHKDLARIIK-FLLKKVGPSEALFFSPKR-------------------------------GDSLDKFLEE  260 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~-~lLk~~G~~~~ii~~~~r-------------------------------~~~~~~f~~~  260 (309)
                      ++..++++..+...+++.+. ++|+|||  .+++..+..                               ..+.+.+.+.
T Consensus       108 ~~~~~l~~~~~~~~~l~~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (250)
T 2p7i_A          108 VLTHVLEHIDDPVALLKRINDDWLAEGG--RLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERD  185 (250)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTTEEEEE--EEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHH
T ss_pred             EEhhHHHhhcCHHHHHHHHHHHhcCCCC--EEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHH
Confidence            99999999999999999999 9999999  566655322                               2356678899


Q ss_pred             HHhCCCeEEEEec
Q 021691          261 IEGNHLHFSIIEN  273 (309)
Q Consensus       261 ~~~~G~~~~~~~~  273 (309)
                      ++++||.+..+..
T Consensus       186 l~~~Gf~~~~~~~  198 (250)
T 2p7i_A          186 ASRAGLQVTYRSG  198 (250)
T ss_dssp             HHHTTCEEEEEEE
T ss_pred             HHHCCCeEEEEee
Confidence            9999999877653

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.57  E-value=1.4e-14  Score=127.98  Aligned_cols=132  Identities=17%  Similarity=0.196  Sum_probs=102.1

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCCCccE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVDTFDV  211 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~~fDv  211 (309)
                      .++.+|||+|||+|..++.+|...+..+|+++|.++.+++.+++|+..+++.    ++++...++.+.... ...++||+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~----~v~~~~~d~~~~~~~~~~~~~fD~  154 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK----GARALWGRAEVLAREAGHREAYAR  154 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS----SEEEEECCHHHHTTSTTTTTCEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC----ceEEEECcHHHhhcccccCCCceE
Confidence            4678999999999999999999888889999999999999999999999873    477766655432211 22468999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-CchHHHHHHHHHhCCCeEEEEecc
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-GDSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-~~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                      |++..+    .....+++.+.++|++||  .+++..... ......+.+.++..|+.+..+..+
T Consensus       155 I~s~a~----~~~~~ll~~~~~~LkpgG--~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~  212 (249)
T 3g89_A          155 AVARAV----APLCVLSELLLPFLEVGG--AAVAMKGPRVEEELAPLPPALERLGGRLGEVLAL  212 (249)
T ss_dssp             EEEESS----CCHHHHHHHHGGGEEEEE--EEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred             EEECCc----CCHHHHHHHHHHHcCCCe--EEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEe
Confidence            999643    356889999999999999  555544322 234456777888889998776654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.57  E-value=5.4e-15  Score=131.39  Aligned_cols=141  Identities=13%  Similarity=0.146  Sum_probs=99.7

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC------------------------
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG------------------------  186 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~------------------------  186 (309)
                      ...+|++|||||||+|..++.+++. +..+|+++|+|+.|++.+++++..+...+.                        
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            4567899999999999888765543 456899999999999999998876532110                        


Q ss_pred             -CCceE-EEEeeCCCCCC--CCCCCCccEEEEcCCCCCc----ccHHHHHHHHHHHHhcCCCeEEEEEeecC--------
Q 021691          187 -GTTVK-SMTLHWNQDDF--PYIVDTFDVIVASDCTFFK----EFHKDLARIIKFLLKKVGPSEALFFSPKR--------  250 (309)
Q Consensus       187 -~~~v~-~~~l~w~~~~~--~~~~~~fDvIi~~d~ly~~----~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------  250 (309)
                       ...+. +...|......  +...++||+|+++.++++.    ++...+++.++++|||||  .+++.....        
T Consensus       131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG--~li~~~~~~~~~~~~g~  208 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGG--HLVTTVTLRLPSYMVGK  208 (263)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEE--EEEEEEESSCCEEEETT
T ss_pred             HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCc--EEEEEEeecCccceeCC
Confidence             01122 44444433211  1124689999999988763    566789999999999999  565554221        


Q ss_pred             ------CchHHHHHHHHHhCCCeEEEEecc
Q 021691          251 ------GDSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       251 ------~~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                            ..+.+.+.+.+.++||.+..+...
T Consensus       209 ~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          209 REFSCVALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence                  136778999999999998776643

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.56  E-value=1.8e-14  Score=126.21  Aligned_cols=131  Identities=15%  Similarity=0.150  Sum_probs=99.9

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCCccE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDTFDV  211 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~fDv  211 (309)
                      .++++|||+|||+|..++.+|...++.+|+++|.++.+++.+++|+..+++.    ++.+...+..+... ....++||+
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~~~~~~~~~~fD~  144 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE----NTTFCHDRAETFGQRKDVRESYDI  144 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS----SEEEEESCHHHHTTCTTTTTCEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CEEEEeccHHHhcccccccCCccE
Confidence            3678999999999999999988777789999999999999999999998863    46666665432221 112468999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-CchHHHHHHHHHhCCCeEEEEec
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      |++..+    .+...+++.+.++|+|||  .+++..... ......+.+.+++.||.+..+..
T Consensus       145 V~~~~~----~~~~~~l~~~~~~LkpgG--~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~  201 (240)
T 1xdz_A          145 VTARAV----ARLSVLSELCLPLVKKNG--LFVALKAASAEEELNAGKKAITTLGGELENIHS  201 (240)
T ss_dssp             EEEECC----SCHHHHHHHHGGGEEEEE--EEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEecc----CCHHHHHHHHHHhcCCCC--EEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEE
Confidence            999652    567899999999999999  555543222 33455677888999998876554

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.56  E-value=1.6e-14  Score=130.90  Aligned_cols=134  Identities=13%  Similarity=0.067  Sum_probs=105.0

Q ss_pred             cCCCCeEEEeCCCCChhhHHHH-HhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIA-ATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la-~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      +.++.+|||+|||+|..++.+| +..++.+|+++|+++.+++.+++++..++..   .++++...|+....  .. ++||
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~--~~-~~fD  189 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA---GQITLHRQDAWKLD--TR-EGYD  189 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG---GGEEEEECCGGGCC--CC-SCEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC---CceEEEECchhcCC--cc-CCeE
Confidence            4578899999999999998875 4456779999999999999999999887763   45777777765432  22 7899


Q ss_pred             EEEEcCCCCCcccHHH---HHHHHHHHHhcCCCeEEEEEeecC-------------------------------------
Q 021691          211 VIVASDCTFFKEFHKD---LARIIKFLLKKVGPSEALFFSPKR-------------------------------------  250 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~---ll~~l~~lLk~~G~~~~ii~~~~r-------------------------------------  250 (309)
                      +|+++.++++..+...   +++.+.++|+|||  .+++....+                                     
T Consensus       190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (305)
T 3ocj_A          190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGG--ALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNA  267 (305)
T ss_dssp             EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEE--EEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCC
T ss_pred             EEEECChhhhcCCHHHHHHHHHHHHHhcCCCe--EEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhc
Confidence            9999998887655554   7999999999999  555554211                                     


Q ss_pred             CchHHHHHHHHHhCCCeEEEEec
Q 021691          251 GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       251 ~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      -.+.+++.+.++++||.+..+..
T Consensus       268 ~~~~~~~~~~l~~aGF~~v~~~~  290 (305)
T 3ocj_A          268 LRTHAQTRAQLEEAGFTDLRFED  290 (305)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEEEC
T ss_pred             cCCHHHHHHHHHHCCCEEEEEEc
Confidence            13567888999999999876654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.56  E-value=4.9e-14  Score=123.61  Aligned_cols=136  Identities=10%  Similarity=0.061  Sum_probs=104.4

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      +.......++.+|||+|||+|..+..+++.. ..+|+++|.++.+++.+++++..+      .++.+...++...  +..
T Consensus        85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~--~~~  155 (254)
T 1xtp_A           85 FIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM------PVGKFILASMETA--TLP  155 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS------SEEEEEESCGGGC--CCC
T ss_pred             HHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC------CceEEEEccHHHC--CCC
Confidence            3333345578899999999999999888764 568999999999999999886543      2466666665432  334


Q ss_pred             CCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------CchHHHHHHHHHhCCCeEE
Q 021691          206 VDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR--------------GDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------~~~~~~f~~~~~~~G~~~~  269 (309)
                      .++||+|++..++++.  .+...+++.+.++|+|||  .+++.....              ..+.+.+.+.++++||.+.
T Consensus       156 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  233 (254)
T 1xtp_A          156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNG--YIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCe--EEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEE
Confidence            5789999999999987  568899999999999999  555554311              1256788899999999986


Q ss_pred             EEe
Q 021691          270 IIE  272 (309)
Q Consensus       270 ~~~  272 (309)
                      .+.
T Consensus       234 ~~~  236 (254)
T 1xtp_A          234 KEA  236 (254)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.56  E-value=2.5e-14  Score=121.86  Aligned_cols=141  Identities=17%  Similarity=0.176  Sum_probs=108.5

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .++....+.+++...  ..++++|||+|||+|..++.+++. +..+|+++|.++.+++.+++++..++..    ++.+..
T Consensus        43 ~~~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~  115 (205)
T 3grz_A           43 NHQTTQLAMLGIERA--MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIY----DIALQK  115 (205)
T ss_dssp             CHHHHHHHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCC----CCEEEE
T ss_pred             CCccHHHHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEe
Confidence            456667777777643  236789999999999999998774 6679999999999999999999988873    267777


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      .|+...    ..++||+|+++.++.   ....+++.+.++|+++|  .+++... .....+.+.+.++++||.+..+.
T Consensus       116 ~d~~~~----~~~~fD~i~~~~~~~---~~~~~l~~~~~~L~~gG--~l~~~~~-~~~~~~~~~~~~~~~Gf~~~~~~  183 (205)
T 3grz_A          116 TSLLAD----VDGKFDLIVANILAE---ILLDLIPQLDSHLNEDG--QVIFSGI-DYLQLPKIEQALAENSFQIDLKM  183 (205)
T ss_dssp             SSTTTT----CCSCEEEEEEESCHH---HHHHHGGGSGGGEEEEE--EEEEEEE-EGGGHHHHHHHHHHTTEEEEEEE
T ss_pred             cccccc----CCCCceEEEECCcHH---HHHHHHHHHHHhcCCCC--EEEEEec-CcccHHHHHHHHHHcCCceEEee
Confidence            766432    347899999976543   35788999999999999  4554433 33466788899999999886554

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.55  E-value=4.8e-14  Score=125.20  Aligned_cols=142  Identities=16%  Similarity=0.208  Sum_probs=104.0

Q ss_pred             cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh---ccCCCCCCceEEEE
Q 021691          118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA---NSGAFGGTTVKSMT  194 (309)
Q Consensus       118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~---n~~~~~~~~v~~~~  194 (309)
                      -+..|+.++    ...++.+|||+|||+|.+++.+++..+..+|+++|+++.+++.+++|+..   |++.   .++.+..
T Consensus        24 D~~lL~~~~----~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~---~~v~~~~   96 (260)
T 2ozv_A           24 DAMLLASLV----ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS---ARIEVLE   96 (260)
T ss_dssp             HHHHHHHTC----CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG---GGEEEEE
T ss_pred             HHHHHHHHh----cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc---ceEEEEe
Confidence            345566654    33467899999999999999999988778999999999999999999988   7762   3577777


Q ss_pred             eeCCCCCC-----CCCCCCccEEEEcCCCCCc------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCC
Q 021691          195 LHWNQDDF-----PYIVDTFDVIVASDCTFFK------------------EFHKDLARIIKFLLKKVGPSEALFFSPKRG  251 (309)
Q Consensus       195 l~w~~~~~-----~~~~~~fDvIi~~d~ly~~------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~  251 (309)
                      .|+.+...     ....++||+|+++.+++..                  .....+++.+.++|+++|  .+++..+  .
T Consensus        97 ~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~--~  172 (260)
T 2ozv_A           97 ADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGG--QLSLISR--P  172 (260)
T ss_dssp             CCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEE--EEEEEEC--G
T ss_pred             CCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCC--EEEEEEc--H
Confidence            77654311     1235689999997655433                  236789999999999999  4544433  3


Q ss_pred             chHHHHHHHHHhCCCeEEEE
Q 021691          252 DSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       252 ~~~~~f~~~~~~~G~~~~~~  271 (309)
                      ....++.+.+++. |....+
T Consensus       173 ~~~~~~~~~l~~~-~~~~~i  191 (260)
T 2ozv_A          173 QSVAEIIAACGSR-FGGLEI  191 (260)
T ss_dssp             GGHHHHHHHHTTT-EEEEEE
T ss_pred             HHHHHHHHHHHhc-CCceEE
Confidence            4567788888875 654443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.55  E-value=2.8e-14  Score=119.32  Aligned_cols=141  Identities=18%  Similarity=0.165  Sum_probs=105.8

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ...+..++.......++.+|||+|||+|..++.+++..  .+|+++|.++.+++.+++++..++..   .++.+...++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~   92 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLG---DNVTLMEGDAP   92 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCC---TTEEEEESCHH
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCC---cceEEEecCHH
Confidence            34455555555566788999999999999999988764  79999999999999999999988762   35666665543


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          199 QDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       199 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      .. .+. .++||+|++..+++   ....+++.+.++|+++|  .+++.. ........+.+.+++.||.++.++
T Consensus        93 ~~-~~~-~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG--~l~~~~-~~~~~~~~~~~~l~~~g~~~~~~~  158 (192)
T 1l3i_A           93 EA-LCK-IPDIDIAVVGGSGG---ELQEILRIIKDKLKPGG--RIIVTA-ILLETKFEAMECLRDLGFDVNITE  158 (192)
T ss_dssp             HH-HTT-SCCEEEEEESCCTT---CHHHHHHHHHHTEEEEE--EEEEEE-CBHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             Hh-ccc-CCCCCEEEECCchH---HHHHHHHHHHHhcCCCc--EEEEEe-cCcchHHHHHHHHHHCCCceEEEE
Confidence            31 111 14799999987654   45889999999999999  444433 344566788899999999765544

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.55  E-value=3.5e-14  Score=123.65  Aligned_cols=131  Identities=15%  Similarity=0.160  Sum_probs=101.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++++|||+|||+|..+..+++. +..+|+++|.++.+++.++++...+       ++.+...+....  +...++||+
T Consensus        41 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~d~~~~--~~~~~~fD~  110 (243)
T 3bkw_A           41 EVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDT-------GITYERADLDKL--HLPQDSFDL  110 (243)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSS-------SEEEEECCGGGC--CCCTTCEEE
T ss_pred             ccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccC-------CceEEEcChhhc--cCCCCCceE
Confidence            446889999999999999998876 4449999999999999998765332       355655555432  234578999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec-----------------------C------------------
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK-----------------------R------------------  250 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~-----------------------r------------------  250 (309)
                      |++..++++..+...+++.+.++|+|||  .+++..+.                       .                  
T Consensus       111 v~~~~~l~~~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (243)
T 3bkw_A          111 AYSSLALHYVEDVARLFRTVHQALSPGG--HFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVV  188 (243)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCC
T ss_pred             EEEeccccccchHHHHHHHHHHhcCcCc--EEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceE
Confidence            9999999998899999999999999999  55543311                       0                  


Q ss_pred             --CchHHHHHHHHHhCCCeEEEEecc
Q 021691          251 --GDSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       251 --~~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                        ..+.+.+.+.++++||.+..+...
T Consensus       189 ~~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          189 KHHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             EEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EEeccHHHHHHHHHHcCCEeeeeccC
Confidence              025778899999999998776653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.55  E-value=2.2e-14  Score=125.31  Aligned_cols=128  Identities=13%  Similarity=0.035  Sum_probs=96.6

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      +.++++|||+|||+|..+..+++.  +.+|+++|+++.+++.++++     .       .+...+......+..+++||+
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-----~-------~~~~~d~~~~~~~~~~~~fD~  104 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK-----F-------NVVKSDAIEYLKSLPDKYLDG  104 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT-----S-------EEECSCHHHHHHTSCTTCBSE
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh-----c-------ceeeccHHHHhhhcCCCCeeE
Confidence            456789999999999999998886  45899999999999999876     1       222222211111334578999


Q ss_pred             EEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEeecC-----------------CchHHHHHHHHHhCCCeEEEEe
Q 021691          212 IVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSPKR-----------------GDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       212 Ii~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      |++..++++..  +...+++.+.++|+|||  .+++..+..                 ..+.+.+.+.++++||.+..+.
T Consensus       105 i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~  182 (240)
T 3dli_A          105 VMISHFVEHLDPERLFELLSLCYSKMKYSS--YIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE  182 (240)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHHBCTTC--CEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred             EEECCchhhCCcHHHHHHHHHHHHHcCCCc--EEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence            99999999877  56999999999999999  455544321                 2345678889999999987776


Q ss_pred             ccC
Q 021691          273 NYN  275 (309)
Q Consensus       273 ~~~  275 (309)
                      .+.
T Consensus       183 ~~~  185 (240)
T 3dli_A          183 FFE  185 (240)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            655

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.55  E-value=8.7e-14  Score=121.14  Aligned_cols=136  Identities=15%  Similarity=0.100  Sum_probs=104.8

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +..++....  .++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++..       ..++.+...+.... 
T Consensus        43 ~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-  110 (242)
T 3l8d_A           43 IIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGE-------GPDLSFIKGDLSSL-  110 (242)
T ss_dssp             HHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTC-------BTTEEEEECBTTBC-
T ss_pred             HHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcc-------cCCceEEEcchhcC-
Confidence            344444332  36789999999999999998886  5699999999999999987631       23566766666533 


Q ss_pred             CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------------CchHHHHHHHH
Q 021691          202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------------------GDSLDKFLEEI  261 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------~~~~~~f~~~~  261 (309)
                       +...++||+|++..++++..+...+++.+.++|+|||  .+++.....                    ..+...+.+.+
T Consensus       111 -~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  187 (242)
T 3l8d_A          111 -PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDG--YACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLV  187 (242)
T ss_dssp             -SSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEE--EEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHH
T ss_pred             -CCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCe--EEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHH
Confidence             3346789999999999999999999999999999999  555544211                    13456788999


Q ss_pred             HhCCCeEEEEe
Q 021691          262 EGNHLHFSIIE  272 (309)
Q Consensus       262 ~~~G~~~~~~~  272 (309)
                      +++||.+....
T Consensus       188 ~~~Gf~~~~~~  198 (242)
T 3l8d_A          188 KEQGFKVVDGI  198 (242)
T ss_dssp             HHTTEEEEEEE
T ss_pred             HHcCCEEEEee
Confidence            99999987655

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.55  E-value=1.2e-13  Score=119.02  Aligned_cols=117  Identities=15%  Similarity=0.209  Sum_probs=90.7

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ...+...+.....  ++.+|||+|||+|..+..+++..  .+|+++|.++.+++.+++++..++.     ++.+...|..
T Consensus        25 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~   95 (227)
T 1ve3_A           25 IETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRES-----NVEFIVGDAR   95 (227)
T ss_dssp             HHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEECCTT
T ss_pred             HHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCC-----CceEEECchh
Confidence            3445555555432  47899999999999999988863  3999999999999999999887752     4566666654


Q ss_pred             CCCCCCCCCCccEEEEcCC--CCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          199 QDDFPYIVDTFDVIVASDC--TFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       199 ~~~~~~~~~~fDvIi~~d~--ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ..  +...++||+|+++++  +++..+...+++.+.++|+|||  .+++..+
T Consensus        96 ~~--~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG--~l~~~~~  143 (227)
T 1ve3_A           96 KL--SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG--KFIMYFT  143 (227)
T ss_dssp             SC--CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEE--EEEEEEE
T ss_pred             cC--CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCc--EEEEEec
Confidence            32  233568999999999  7777788999999999999999  5555544

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.55  E-value=9.9e-14  Score=129.83  Aligned_cols=124  Identities=20%  Similarity=0.232  Sum_probs=96.3

Q ss_pred             ecccHHHHHHHHhhCc--CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE
Q 021691          115 HWPSEDVLAFFSLSHA--DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS  192 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~--~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~  192 (309)
                      +.+.+..+.+.+....  ...++++|||+|||+|.+++.+++.  +.+|+++|+++.+++.+++|+..|+..     +++
T Consensus       212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~-----v~~  284 (381)
T 3dmg_A          212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALK-----AQA  284 (381)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCC-----CEE
T ss_pred             CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC-----eEE
Confidence            3466677777775532  2347889999999999999999886  569999999999999999999999862     555


Q ss_pred             EEeeCCCCCCCCCCCCccEEEEcCCCCC-----cccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          193 MTLHWNQDDFPYIVDTFDVIVASDCTFF-----KEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~-----~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      ...|+....  ...++||+|+++.++++     ......+++.+.++|++||  .+++....
T Consensus       285 ~~~D~~~~~--~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG--~l~iv~n~  342 (381)
T 3dmg_A          285 LHSDVDEAL--TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGG--VFFLVSNP  342 (381)
T ss_dssp             EECSTTTTS--CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEE--EEEEEECT
T ss_pred             EEcchhhcc--ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCc--EEEEEEcC
Confidence            555554332  22478999999888877     5677899999999999999  55554443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.54  E-value=1.4e-13  Score=128.49  Aligned_cols=130  Identities=18%  Similarity=0.181  Sum_probs=93.9

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .+..-..-++++.......++.+|||+|||+|.+++.+++..++.+|+++|+++.+++.+++|+..|++.. ..++.+..
T Consensus       203 s~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~-~~~v~~~~  281 (375)
T 4dcm_A          203 SRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA-LDRCEFMI  281 (375)
T ss_dssp             TCSSCCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGG-GGGEEEEE
T ss_pred             cCCcccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCc-CceEEEEe
Confidence            33333333444455545556789999999999999999998878899999999999999999999998631 12455555


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCc-----ccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFK-----EFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~-----~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      .|...   ....++||+|+++.++|..     .....+++.+.++|+|||  .+++.....
T Consensus       282 ~D~~~---~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG--~l~iv~n~~  337 (375)
T 4dcm_A          282 NNALS---GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING--ELYIVANRH  337 (375)
T ss_dssp             CSTTT---TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEE--EEEEEEETT
T ss_pred             chhhc---cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCc--EEEEEEECC
Confidence            54433   2345689999998887642     234578999999999999  566655443

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.54  E-value=4.4e-14  Score=116.54  Aligned_cols=125  Identities=10%  Similarity=0.080  Sum_probs=96.8

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++++|||+|||+|..+..+++..  .+|+++|.++.+++.++++     .    .++.+...+     .+...++||+
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~----~~v~~~~~d-----~~~~~~~~D~   78 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK-----F----DSVITLSDP-----KEIPDNSVDF   78 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH-----C----TTSEEESSG-----GGSCTTCEEE
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh-----C----CCcEEEeCC-----CCCCCCceEE
Confidence            3467899999999999999988864  4999999999999999987     1    234555444     3344578999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----------CchHHHHHHHHHhCCCeEEEEeccCc
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----------GDSLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------~~~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      |+++.++++..+...+++.+.++|+|+|  .+++.....           ..+.+++.+.++  ||.+........
T Consensus        79 v~~~~~l~~~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~  150 (170)
T 3i9f_A           79 ILFANSFHDMDDKQHVISEVKRILKDDG--RVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTP  150 (170)
T ss_dssp             EEEESCSTTCSCHHHHHHHHHHHEEEEE--EEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSST
T ss_pred             EEEccchhcccCHHHHHHHHHHhcCCCC--EEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCC
Confidence            9999999999999999999999999999  566654322           124566777776  998876665443

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.54  E-value=8.4e-14  Score=117.40  Aligned_cols=128  Identities=17%  Similarity=0.207  Sum_probs=97.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++++|||+|||+|..+..+++.  +.+|+++|.++.+++.+++++..++.    .++.+...+.....  . .++||+
T Consensus        30 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~d~~~~~--~-~~~~D~  100 (199)
T 2xvm_A           30 VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENL----DNLHTRVVDLNNLT--F-DRQYDF  100 (199)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTC----TTEEEEECCGGGCC--C-CCCEEE
T ss_pred             ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCC----CCcEEEEcchhhCC--C-CCCceE
Confidence            346789999999999999998886  56999999999999999999988776    24666666655432  2 578999


Q ss_pred             EEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEeecC------------CchHHHHHHHHHhCCCeEEEEe
Q 021691          212 IVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSPKR------------GDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       212 Ii~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~~r------------~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      |+++.++++..  +...+++.+.++|+|||  .+++.....            ..+.+++.+.+.+  |.+...+
T Consensus       101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~  171 (199)
T 2xvm_A          101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGG--YNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN  171 (199)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHTEEEEE--EEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCe--EEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence            99999988765  78999999999999999  555554321            1234455566654  6665443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.54  E-value=9.7e-14  Score=124.05  Aligned_cols=141  Identities=18%  Similarity=0.179  Sum_probs=106.6

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      -|....+.+.+..... .++.+|||+|||+|..++.+++..+..+|+++|+++.+++.+++|+..++..    ++.+...
T Consensus        92 r~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~----~v~~~~~  166 (276)
T 2b3t_A           92 RPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK----NIHILQS  166 (276)
T ss_dssp             CTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC----SEEEECC
T ss_pred             CchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEc
Confidence            4556677777665433 4678999999999999999998888889999999999999999999998762    5777777


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      |+...   ...++||+|+++.+....                         .....+++.+.++|++||  .+++...  
T Consensus       167 d~~~~---~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG--~l~~~~~--  239 (276)
T 2b3t_A          167 DWFSA---LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGG--FLLLEHG--  239 (276)
T ss_dssp             STTGG---GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEE--EEEEECC--
T ss_pred             chhhh---cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCC--EEEEEEC--
Confidence            66542   124689999997554332                         345778899999999999  4444332  


Q ss_pred             CchHHHHHHHHHhCCCeE
Q 021691          251 GDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       251 ~~~~~~f~~~~~~~G~~~  268 (309)
                      ....+.+.+.+++.||..
T Consensus       240 ~~~~~~~~~~l~~~Gf~~  257 (276)
T 2b3t_A          240 WQQGEAVRQAFILAGYHD  257 (276)
T ss_dssp             SSCHHHHHHHHHHTTCTT
T ss_pred             chHHHHHHHHHHHCCCcE
Confidence            234466778888889863

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.53  E-value=9.3e-14  Score=119.63  Aligned_cols=131  Identities=11%  Similarity=0.073  Sum_probs=95.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      .+.+|||||||+|..++.+|+..+..+|+++|+++.+++.+++|+..+++    .++.+...|..........++||.|+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~----~nv~~~~~d~~~l~~~~~~~~~d~v~  113 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA----QNVKLLNIDADTLTDVFEPGEVKRVY  113 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC----SSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC----CCEEEEeCCHHHHHhhcCcCCcCEEE
Confidence            46799999999999999999988888999999999999999999998876    35666666554311112356799998


Q ss_pred             EcCCCCCcc--------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEE
Q 021691          214 ASDCTFFKE--------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       214 ~~d~ly~~~--------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      +..+..+..        ..+.+++.+.++|+|||  .+++.+ ..........+.+.+.||.....
T Consensus       114 ~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG--~l~~~t-d~~~~~~~~~~~~~~~g~~~~~~  176 (213)
T 2fca_A          114 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGG--SIHFKT-DNRGLFEYSLKSFSEYGLLLTYV  176 (213)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSC--EEEEEE-SCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             EECCCCCcCccccccccCcHHHHHHHHHHcCCCC--EEEEEe-CCHHHHHHHHHHHHHCCCccccc
Confidence            754322211        13789999999999999  444443 33333445567778888876543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=3.7e-14  Score=126.71  Aligned_cols=125  Identities=14%  Similarity=0.152  Sum_probs=96.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..+++  ++.+|+++|.++.|++.++++.         .++.+...+....  +. .++||+
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~--~~-~~~fD~  120 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY---------PHLHFDVADARNF--RV-DKPLDA  120 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC---------TTSCEEECCTTTC--CC-SSCEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC---------CCCEEEECChhhC--Cc-CCCcCE
Confidence            34678999999999999999888  4679999999999999998764         1234455554432  22 468999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCC-----------------------------chHHHHHHHHH
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRG-----------------------------DSLDKFLEEIE  262 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~-----------------------------~~~~~f~~~~~  262 (309)
                      |+++.++++..+...+++.+.++|+|||  .+++..+...                             .+.+.+.+.++
T Consensus       121 v~~~~~l~~~~d~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (279)
T 3ccf_A          121 VFSNAMLHWVKEPEAAIASIHQALKSGG--RFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILE  198 (279)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHH
T ss_pred             EEEcchhhhCcCHHHHHHHHHHhcCCCc--EEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHH
Confidence            9999999998899999999999999999  5555443221                             13456677888


Q ss_pred             hCCCeEEEEe
Q 021691          263 GNHLHFSIIE  272 (309)
Q Consensus       263 ~~G~~~~~~~  272 (309)
                      ++||.+..++
T Consensus       199 ~aGf~~~~~~  208 (279)
T 3ccf_A          199 KQGFDVTYAA  208 (279)
T ss_dssp             HHTEEEEEEE
T ss_pred             HcCCEEEEEE
Confidence            8999876554

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.53  E-value=5.6e-14  Score=122.32  Aligned_cols=96  Identities=13%  Similarity=0.079  Sum_probs=79.2

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.+++++..++.     ++.+...+.....  . .++||+|+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~~--~-~~~fD~v~  106 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-----KPRLACQDISNLN--I-NRKFDLIT  106 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-----CCEEECCCGGGCC--C-SCCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-----CeEEEecccccCC--c-cCCceEEE
Confidence            6789999999999999998876  56899999999999999999887654     3455555543322  2 26899999


Q ss_pred             EcC-CCCCc---ccHHHHHHHHHHHHhcCC
Q 021691          214 ASD-CTFFK---EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       214 ~~d-~ly~~---~~~~~ll~~l~~lLk~~G  239 (309)
                      +.. ++++.   .+...+++.+.++|+|||
T Consensus       107 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG  136 (246)
T 1y8c_A          107 CCLDSTNYIIDSDDLKKYFKAVSNHLKEGG  136 (246)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHTTEEEEE
T ss_pred             EcCccccccCCHHHHHHHHHHHHHhcCCCc
Confidence            997 88887   778899999999999999

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.53  E-value=2.3e-14  Score=129.31  Aligned_cols=114  Identities=21%  Similarity=0.187  Sum_probs=86.5

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-------------------------
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-------------------------  185 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-------------------------  185 (309)
                      ..+++++|||+|||+|..++.+++.+++.+|+++|+++.+++.+++++..++...                         
T Consensus        43 ~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T 3g07_A           43 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK  122 (292)
T ss_dssp             GGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred             hhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence            3457899999999999999999999888899999999999999999877654210                         


Q ss_pred             -----------------------------CCCceEEEEeeCCCCC---CCCCCCCccEEEEcCCCCCc------ccHHHH
Q 021691          186 -----------------------------GGTTVKSMTLHWNQDD---FPYIVDTFDVIVASDCTFFK------EFHKDL  227 (309)
Q Consensus       186 -----------------------------~~~~v~~~~l~w~~~~---~~~~~~~fDvIi~~d~ly~~------~~~~~l  227 (309)
                                                   -..++.+...|+....   .+...++||+|++..++.+.      .....+
T Consensus       123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~  202 (292)
T 3g07_A          123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM  202 (292)
T ss_dssp             -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence                                         0036788888776443   11245789999999988443      378889


Q ss_pred             HHHHHHHHhcCCCeEEEEE
Q 021691          228 ARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       228 l~~l~~lLk~~G~~~~ii~  246 (309)
                      ++.+.++|+|||  .+++.
T Consensus       203 l~~~~~~LkpGG--~lil~  219 (292)
T 3g07_A          203 FRRIYRHLRPGG--ILVLE  219 (292)
T ss_dssp             HHHHHHHEEEEE--EEEEE
T ss_pred             HHHHHHHhCCCc--EEEEe
Confidence            999999999999  55553

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.53  E-value=9.6e-14  Score=124.51  Aligned_cols=136  Identities=16%  Similarity=0.078  Sum_probs=104.9

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++..++..   .++.+...+....... ..++||+|
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~-~~~~fD~v  137 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRR---FKVFFRAQDSYGRHMD-LGKEFDVI  137 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCS---SEEEEEESCTTTSCCC-CSSCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC---ccEEEEECCccccccC-CCCCcCEE
Confidence            46789999999999999887775 5569999999999999999998877652   3567766665543221 35789999


Q ss_pred             EEcCCCCC----cccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------------------------------
Q 021691          213 VASDCTFF----KEFHKDLARIIKFLLKKVGPSEALFFSPKR--------------------------------------  250 (309)
Q Consensus       213 i~~d~ly~----~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------------------------  250 (309)
                      ++..++++    ..+...+++.+.++|+|||  .+++..+..                                      
T Consensus       138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  215 (298)
T 1ri5_A          138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGG--YFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFT  215 (298)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEE--EEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEE
T ss_pred             EECchhhhhcCCHHHHHHHHHHHHHhcCCCC--EEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEE
Confidence            99998865    5678899999999999999  555443221                                      


Q ss_pred             -----------CchHHHHHHHHHhCCCeEEEEeccC
Q 021691          251 -----------GDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       251 -----------~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                                 ..+.+.+.+.++++||.+.....+.
T Consensus       216 l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~  251 (298)
T 1ri5_A          216 LLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI  251 (298)
T ss_dssp             ETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred             EchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence                       1144788899999999987776543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.53  E-value=2.1e-13  Score=118.82  Aligned_cols=157  Identities=15%  Similarity=0.168  Sum_probs=111.7

Q ss_pred             CCCCceeecccHH-HHHHHHhh---CcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhcc
Q 021691          108 DNTGLVCHWPSED-VLAFFSLS---HADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANS  182 (309)
Q Consensus       108 ~~tG~~~~W~sa~-~La~~l~~---~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~  182 (309)
                      +..+++ .|+--. .||.-++.   +..+.+|.+|||||||+|..+..+|...+ .++|+++|.+++|++.+++++... 
T Consensus        48 ~~~e~r-~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-  125 (233)
T 4df3_A           48 NGEEYR-EWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-  125 (233)
T ss_dssp             TTEEEE-ECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-
T ss_pred             CCceee-eECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-
Confidence            445777 998755 46666654   34577999999999999999999998764 579999999999999998876543 


Q ss_pred             CCCCCCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------Cch
Q 021691          183 GAFGGTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------GDS  253 (309)
Q Consensus       183 ~~~~~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------~~~  253 (309)
                           .++.....+-.... .+.....+|+|++ |.. +..+...++..++++|||||  .++++...+        ...
T Consensus       126 -----~ni~~V~~d~~~p~~~~~~~~~vDvVf~-d~~-~~~~~~~~l~~~~r~LKpGG--~lvI~ik~r~~d~~~p~~~~  196 (233)
T 4df3_A          126 -----RNIFPILGDARFPEKYRHLVEGVDGLYA-DVA-QPEQAAIVVRNARFFLRDGG--YMLMAIKARSIDVTTEPSEV  196 (233)
T ss_dssp             -----TTEEEEESCTTCGGGGTTTCCCEEEEEE-CCC-CTTHHHHHHHHHHHHEEEEE--EEEEEEECCHHHHHTCCCHH
T ss_pred             -----cCeeEEEEeccCccccccccceEEEEEE-ecc-CChhHHHHHHHHHHhccCCC--EEEEEEecccCCCCCChHHH
Confidence                 24555544443322 2344678999987 543 45567789999999999999  555543322        233


Q ss_pred             HHHHHHHHHhCCCeEEEEeccC
Q 021691          254 LDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       254 ~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                      +++-.+.+++.||.+.......
T Consensus       197 ~~~ev~~L~~~GF~l~e~i~L~  218 (233)
T 4df3_A          197 YKREIKTLMDGGLEIKDVVHLD  218 (233)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECT
T ss_pred             HHHHHHHHHHCCCEEEEEEccC
Confidence            4555677889999886554433

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.53  E-value=1.7e-13  Score=120.75  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=87.9

Q ss_pred             HHHHHHHhh-CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          120 DVLAFFSLS-HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       120 ~~La~~l~~-~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ..+.+.+.. .....++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.+++++ ...    ..++.+...++.
T Consensus        24 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~----~~~~~~~~~d~~   96 (263)
T 2yqz_A           24 GQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGV----DRKVQVVQADAR   96 (263)
T ss_dssp             HHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTS----CTTEEEEESCTT
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hcc----CCceEEEEcccc
Confidence            334444433 234557889999999999999998876  569999999999999999887 222    245777777664


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          199 QDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       199 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ..  +..+++||+|+++.++++..+...+++.+.++|+|||
T Consensus        97 ~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG  135 (263)
T 2yqz_A           97 AI--PLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGG  135 (263)
T ss_dssp             SC--CSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEE
T ss_pred             cC--CCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCc
Confidence            32  3445789999999999999899999999999999999

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.52  E-value=3.3e-14  Score=132.45  Aligned_cols=106  Identities=18%  Similarity=0.216  Sum_probs=87.5

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      +..+...++|++|||||||+|++++.+|+ .|+.+|+++|.++ +++.++++++.|++.   .+|++...+..+..   .
T Consensus        75 i~~~~~~~~~k~VLDvG~GtGiLs~~Aa~-aGA~~V~ave~s~-~~~~a~~~~~~n~~~---~~i~~i~~~~~~~~---l  146 (376)
T 4hc4_A           75 ILRNWAALRGKTVLDVGAGTGILSIFCAQ-AGARRVYAVEASA-IWQQAREVVRFNGLE---DRVHVLPGPVETVE---L  146 (376)
T ss_dssp             HHTTHHHHTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECST-THHHHHHHHHHTTCT---TTEEEEESCTTTCC---C
T ss_pred             HHhCHHhcCCCEEEEeCCCccHHHHHHHH-hCCCEEEEEeChH-HHHHHHHHHHHcCCC---ceEEEEeeeeeeec---C
Confidence            55566778999999999999999998665 5888999999986 889999999999984   56777776554333   3


Q ss_pred             CCCccEEEE---cCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          206 VDTFDVIVA---SDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       206 ~~~fDvIi~---~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .++||+|++   ...+.+....+.++....++|+|+|
T Consensus       147 pe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G  183 (376)
T 4hc4_A          147 PEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGG  183 (376)
T ss_dssp             SSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEE
T ss_pred             CccccEEEeecccccccccchhhhHHHHHHhhCCCCc
Confidence            468999998   4566677789999999999999999

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.52  E-value=7.6e-14  Score=123.06  Aligned_cols=140  Identities=17%  Similarity=0.177  Sum_probs=102.7

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC------------------------
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG------------------------  186 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~------------------------  186 (309)
                      ...++++|||+|||+|..++.+++. +..+|+++|+++.+++.+++++..++..+.                        
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK  131 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence            4467889999999999999987765 235899999999999999988765431000                        


Q ss_pred             -CCce-EEEEeeCCCCCC--CCCCCCccEEEEcCCCC----CcccHHHHHHHHHHHHhcCCCeEEEEEeec---------
Q 021691          187 -GTTV-KSMTLHWNQDDF--PYIVDTFDVIVASDCTF----FKEFHKDLARIIKFLLKKVGPSEALFFSPK---------  249 (309)
Q Consensus       187 -~~~v-~~~~l~w~~~~~--~~~~~~fDvIi~~d~ly----~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~---------  249 (309)
                       ..++ .+...+......  +...++||+|+++.+++    +..+...+++.+.++|+|||  .+++....         
T Consensus       132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG--~li~~~~~~~~~~~~~~  209 (265)
T 2i62_A          132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGG--FLVMVDALKSSYYMIGE  209 (265)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEE--EEEEEEESSCCEEEETT
T ss_pred             hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCc--EEEEEecCCCceEEcCC
Confidence             0015 666666554321  11227899999999998    77788999999999999999  55554321         


Q ss_pred             -----CCchHHHHHHHHHhCCCeEEEEec
Q 021691          250 -----RGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       250 -----r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                           +..+.+.+.+.++++||.+..+..
T Consensus       210 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  238 (265)
T 2i62_A          210 QKFSSLPLGWETVRDAVEEAGYTIEQFEV  238 (265)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccccccccCHHHHHHHHHHCCCEEEEEEE
Confidence                 223566889999999999877664

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.52  E-value=5.2e-14  Score=124.56  Aligned_cols=140  Identities=19%  Similarity=0.198  Sum_probs=104.2

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      ..+......+++...  ..++++|||+|||+|.+++.+++. ++ +|+++|+++.+++.+++|+..|+..     +.+..
T Consensus       103 ~~~tt~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~-g~-~v~gvDi~~~~v~~a~~n~~~~~~~-----v~~~~  173 (254)
T 2nxc_A          103 HHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKL-GG-KALGVDIDPMVLPQAEANAKRNGVR-----PRFLE  173 (254)
T ss_dssp             CSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHT-TC-EEEEEESCGGGHHHHHHHHHHTTCC-----CEEEE
T ss_pred             CCHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHh-CC-eEEEEECCHHHHHHHHHHHHHcCCc-----EEEEE
Confidence            346666666666543  356889999999999999998775 44 9999999999999999999998862     45554


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      .++...   ...++||+|+++.+.   .....++..+.++|+|+|  .+++.... ....+.+.+.++++||.+..+.
T Consensus       174 ~d~~~~---~~~~~fD~Vv~n~~~---~~~~~~l~~~~~~LkpgG--~lils~~~-~~~~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          174 GSLEAA---LPFGPFDLLVANLYA---ELHAALAPRYREALVPGG--RALLTGIL-KDRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             SCHHHH---GGGCCEEEEEEECCH---HHHHHHHHHHHHHEEEEE--EEEEEEEE-GGGHHHHHHHHHHTTCEEEEEE
T ss_pred             CChhhc---CcCCCCCEEEECCcH---HHHHHHHHHHHHHcCCCC--EEEEEeec-cCCHHHHHHHHHHCCCEEEEEe
Confidence            443321   124689999996432   346789999999999999  55554433 3456788899999999986554

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.51  E-value=1.7e-14  Score=121.09  Aligned_cols=147  Identities=9%  Similarity=0.015  Sum_probs=106.0

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      |.-..+...+....  .+..+|||||||+|.+++.++...+..+|+++|+|+.|++.+++|+..++..   .++.+..+ 
T Consensus        34 p~ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~---~~v~~~d~-  107 (200)
T 3fzg_A           34 ATLNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT---IKYRFLNK-  107 (200)
T ss_dssp             GGHHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS---SEEEEECC-
T ss_pred             HhHHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC---ccEEEecc-
Confidence            44455555544432  3467999999999999999988877889999999999999999999999873   24555221 


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC---------Cc-hHHHHHHHHHhCCC
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR---------GD-SLDKFLEEIEGNHL  266 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---------~~-~~~~f~~~~~~~G~  266 (309)
                          ....+.++||+|++..++|..++.+..+..+.+.|+++|   +++..+.|         .. -...|.+.+.+...
T Consensus       108 ----~~~~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pgg---vfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~  180 (200)
T 3fzg_A          108 ----ESDVYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQN---FVISFPIKSLSGKEKGMEENYQLWFESFTKGWIK  180 (200)
T ss_dssp             ----HHHHTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEE---EEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSC
T ss_pred             ----cccCCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCC---EEEEeChHHhcCCCcchhhhHHHHHHHhccCcce
Confidence                112345789999999999998777778889999999998   55555422         12 23455555655566


Q ss_pred             eEEEEeccCc
Q 021691          267 HFSIIENYNA  276 (309)
Q Consensus       267 ~~~~~~~~~~  276 (309)
                      .++..+.-++
T Consensus       181 ~~~~~~~~nE  190 (200)
T 3fzg_A          181 ILDSKVIGNE  190 (200)
T ss_dssp             EEEEEEETTE
T ss_pred             eeeeeeeCce
Confidence            6666554444

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.51  E-value=6.5e-13  Score=121.76  Aligned_cols=131  Identities=14%  Similarity=-0.007  Sum_probs=105.6

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+++.++..+++++|. +.+++.+++++...++   ..++++...|.. ..  .+. +||+|
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~---~~~v~~~~~d~~-~~--~p~-~~D~v  239 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL---SGRAQVVVGSFF-DP--LPA-GAGGY  239 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC---TTTEEEEECCTT-SC--CCC-SCSEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc---CcCeEEecCCCC-CC--CCC-CCcEE
Confidence            3468999999999999999999888889999999 9999999999988776   256888887765 22  222 79999


Q ss_pred             EEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecC--------------------CchHHHHHHHHHhCCCeEEE
Q 021691          213 VASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKR--------------------GDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       213 i~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------~~~~~~f~~~~~~~G~~~~~  270 (309)
                      ++..++|+..+  ...+++.++++|+|||  .+++.....                    ..+.+++.+.++++||+...
T Consensus       240 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  317 (332)
T 3i53_A          240 VLSAVLHDWDDLSAVAILRRCAEAAGSGG--VVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRA  317 (332)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHHTTTC--EEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEE
T ss_pred             EEehhhccCCHHHHHHHHHHHHHhcCCCC--EEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEE
Confidence            99999987665  4889999999999999  666655321                    23567788889999998866


Q ss_pred             Eec
Q 021691          271 IEN  273 (309)
Q Consensus       271 ~~~  273 (309)
                      +..
T Consensus       318 ~~~  320 (332)
T 3i53_A          318 AHP  320 (332)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.50  E-value=8e-14  Score=117.86  Aligned_cols=137  Identities=12%  Similarity=0.035  Sum_probs=96.2

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..++++|||+|||+|..++.+++.+ +..+|+++|.++.+++.+++++..++..   .++.+...|..... ....++||
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~-~~~~~~fD   95 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI---DRVTLIKDGHQNMD-KYIDCPVK   95 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG---GGEEEECSCGGGGG-GTCCSCEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCeEEEECCHHHHh-hhccCCce
Confidence            4568899999999999999998876 3569999999999999999999998762   35666666543322 12347899


Q ss_pred             EEEEcCCCCC---------cccHHHHHHHHHHHHhcCCCeEEEEEeecC-------CchHHHHHHHHHhCCCeEEEEecc
Q 021691          211 VIVASDCTFF---------KEFHKDLARIIKFLLKKVGPSEALFFSPKR-------GDSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       211 vIi~~d~ly~---------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-------~~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                      +|+++.+++.         ......+++.+.++|+++|  .+++.....       ......+.+.+...+|.+...+.+
T Consensus        96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG--~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~  173 (197)
T 3eey_A           96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGG--IITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFI  173 (197)
T ss_dssp             EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEE--EEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEET
T ss_pred             EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCC--EEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEec
Confidence            9998654422         2245679999999999999  555544221       112334444455566777665543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=8.3e-14  Score=123.37  Aligned_cols=137  Identities=8%  Similarity=0.016  Sum_probs=101.8

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+++.+.......++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.++.+.          ++.+...++..
T Consensus        20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~d~~~   87 (261)
T 3ege_A           20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP----------QVEWFTGYAEN   87 (261)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT----------TEEEECCCTTS
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc----------CCEEEECchhh
Confidence            34555565555556789999999999999999887  3679999999999988776542          45666665543


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------CchHHHH
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----------------------GDSLDKF  257 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------~~~~~~f  257 (309)
                        .+...++||+|++..++++..+...+++.+.++|+ ||  .+++.....                      ..+.+.+
T Consensus        88 --~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (261)
T 3ege_A           88 --LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DG--TIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQI  162 (261)
T ss_dssp             --CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SS--CEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHH
T ss_pred             --CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-Cc--EEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHH
Confidence              23445789999999999999999999999999999 99  444444221                      1233455


Q ss_pred             HHHHHhCCCeEEEEecc
Q 021691          258 LEEIEGNHLHFSIIENY  274 (309)
Q Consensus       258 ~~~~~~~G~~~~~~~~~  274 (309)
                      . .++++||....++.+
T Consensus       163 ~-~l~~aGF~~v~~~~~  178 (261)
T 3ege_A          163 N-LLQENTKRRVEAIPF  178 (261)
T ss_dssp             H-HHHHHHCSEEEEEEC
T ss_pred             H-HHHHcCCCceeEEEe
Confidence            6 899999987665543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.50  E-value=5.5e-14  Score=120.50  Aligned_cols=121  Identities=14%  Similarity=0.089  Sum_probs=94.0

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .|-....+..++.......++++|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++..++      ++.+..
T Consensus        32 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~  103 (216)
T 3ofk_A           32 NPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWS------HISWAA  103 (216)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCS------SEEEEE
T ss_pred             CHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCC------CeEEEE
Confidence            45555566666665555567889999999999999998876  4699999999999999998876532      567777


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccH---HHHHHHHHHHHhcCCCeEEEEEee
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFH---KDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~---~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      .+.....   ..++||+|+++.++++..+.   ..+++.+.++|+|||  .+++.++
T Consensus       104 ~d~~~~~---~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG--~l~~~~~  155 (216)
T 3ofk_A          104 TDILQFS---TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGG--HLVFGSA  155 (216)
T ss_dssp             CCTTTCC---CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEE--EEEEEEE
T ss_pred             cchhhCC---CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCC--EEEEEec
Confidence            7665433   45789999999999987765   567999999999999  5555543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.50  E-value=1.1e-13  Score=123.66  Aligned_cols=133  Identities=13%  Similarity=0.136  Sum_probs=99.2

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHh-cCCcEEEEEcCCHHHHHHHHHHHHhc-cCCCCCCceEEEEeeCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAAT-TEALEVVISDGNPQVVDYIQRNVDAN-SGAFGGTTVKSMTLHWNQDDF  202 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~-~~~~~V~~tD~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l~w~~~~~  202 (309)
                      ++.......++.+|||+|||+|..++.+++. .++.+|+++|.++.+++.+++|+..+ +.    .++.+...|+..   
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~----~~v~~~~~d~~~---  173 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI----GNVRTSRSDIAD---  173 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC----TTEEEECSCTTT---
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC----CcEEEEECchhc---
Confidence            3444445668899999999999999999887 45679999999999999999999887 64    356776666553   


Q ss_pred             CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      ....++||+|++.     ..+...+++.+.++|+|+|  .+++..+. ....+.+.+.+++.||......
T Consensus       174 ~~~~~~fD~Vi~~-----~~~~~~~l~~~~~~LkpgG--~l~i~~~~-~~~~~~~~~~l~~~Gf~~~~~~  235 (275)
T 1yb2_A          174 FISDQMYDAVIAD-----IPDPWNHVQKIASMMKPGS--VATFYLPN-FDQSEKTVLSLSASGMHHLETV  235 (275)
T ss_dssp             CCCSCCEEEEEEC-----CSCGGGSHHHHHHTEEEEE--EEEEEESS-HHHHHHHHHHSGGGTEEEEEEE
T ss_pred             cCcCCCccEEEEc-----CcCHHHHHHHHHHHcCCCC--EEEEEeCC-HHHHHHHHHHHHHCCCeEEEEE
Confidence            2334689999982     3355688999999999999  55555543 3355678888888998865543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.50  E-value=1.5e-13  Score=118.27  Aligned_cols=126  Identities=18%  Similarity=0.208  Sum_probs=98.0

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+++. + .+|+++|.++.+++.++++..           .+...+......+..+++||+|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~-----------~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLD-----------HVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSS-----------EEEESCTTTCCCCSCTTCEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCC-----------cEEEcchhhcCCCCCCCccCEE
Confidence            46789999999999999998876 4 799999999999998886531           2334444332233445789999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec----------------------------CCchHHHHHHHHHhC
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK----------------------------RGDSLDKFLEEIEGN  264 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~----------------------------r~~~~~~f~~~~~~~  264 (309)
                      ++.+++++..+...+++.+.++|+++|  .+++..+.                            +..+.+++.+.++++
T Consensus        98 ~~~~~l~~~~~~~~~l~~~~~~L~~gG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  175 (230)
T 3cc8_A           98 IFGDVLEHLFDPWAVIEKVKPYIKQNG--VILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKA  175 (230)
T ss_dssp             EEESCGGGSSCHHHHHHHTGGGEEEEE--EEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHT
T ss_pred             EECChhhhcCCHHHHHHHHHHHcCCCC--EEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHc
Confidence            999999998888999999999999999  55555432                            123577889999999


Q ss_pred             CCeEEEEec
Q 021691          265 HLHFSIIEN  273 (309)
Q Consensus       265 G~~~~~~~~  273 (309)
                      ||.+..+..
T Consensus       176 Gf~~~~~~~  184 (230)
T 3cc8_A          176 GYSISKVDR  184 (230)
T ss_dssp             TEEEEEEEE
T ss_pred             CCeEEEEEe
Confidence            999876654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.50  E-value=3.3e-14  Score=121.33  Aligned_cols=111  Identities=13%  Similarity=0.102  Sum_probs=82.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC-ccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT-FDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~-fDvI  212 (309)
                      ++++|||+|||+|.+++.+++. ++.+|+++|.++.+++.+++|+..+++.  ..++.+...|..........++ ||+|
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~fD~I  129 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCS--SEQAEVINQSSLDFLKQPQNQPHFDVV  129 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCC--TTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCC--ccceEEEECCHHHHHHhhccCCCCCEE
Confidence            6789999999999999986665 4579999999999999999999998762  1246665554332111112467 9999


Q ss_pred             EEcCCCCCcccHHHHHHHH--HHHHhcCCCeEEEEEeecC
Q 021691          213 VASDCTFFKEFHKDLARII--KFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l--~~lLk~~G~~~~ii~~~~r  250 (309)
                      ++..+ |+......+++.+  .++|+|+|  .+++.....
T Consensus       130 ~~~~~-~~~~~~~~~l~~~~~~~~LkpgG--~l~i~~~~~  166 (201)
T 2ift_A          130 FLDPP-FHFNLAEQAISLLCENNWLKPNA--LIYVETEKD  166 (201)
T ss_dssp             EECCC-SSSCHHHHHHHHHHHTTCEEEEE--EEEEEEESS
T ss_pred             EECCC-CCCccHHHHHHHHHhcCccCCCc--EEEEEECCC
Confidence            99666 6677788888888  55799999  555554433

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.50  E-value=1.2e-13  Score=118.72  Aligned_cols=126  Identities=19%  Similarity=0.229  Sum_probs=94.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC--CCCCCCCCcc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD--DFPYIVDTFD  210 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~--~~~~~~~~fD  210 (309)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++   ..       +.+...+....  .......+||
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~~-------~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA---GA-------GEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT---CS-------SCEEECCHHHHHTTCSCCCCCEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh---cc-------cccchhhHHhhcccccccCCCcc
Confidence            35689999999999999998876  56999999999999999887   11       12222222211  1112235699


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC------------------------------CchHHHHHHH
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR------------------------------GDSLDKFLEE  260 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r------------------------------~~~~~~f~~~  260 (309)
                      +|+++.+++ ..+...+++.+.++|+|||  .+++..+..                              ..+.+.+.+.
T Consensus       119 ~v~~~~~l~-~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (227)
T 3e8s_A          119 LICANFALL-HQDIIELLSAMRTLLVPGG--ALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNA  195 (227)
T ss_dssp             EEEEESCCC-SSCCHHHHHHHHHTEEEEE--EEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHH
T ss_pred             EEEECchhh-hhhHHHHHHHHHHHhCCCe--EEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHH
Confidence            999999999 7888999999999999999  555544311                              1267899999


Q ss_pred             HHhCCCeEEEEec
Q 021691          261 IEGNHLHFSIIEN  273 (309)
Q Consensus       261 ~~~~G~~~~~~~~  273 (309)
                      ++++||.+..+..
T Consensus       196 l~~aGf~~~~~~~  208 (227)
T 3e8s_A          196 LDMAGLRLVSLQE  208 (227)
T ss_dssp             HHHTTEEEEEEEC
T ss_pred             HHHcCCeEEEEec
Confidence            9999999877664

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=5.2e-15  Score=129.55  Aligned_cols=143  Identities=17%  Similarity=0.157  Sum_probs=99.2

Q ss_pred             ecccHH--HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE
Q 021691          115 HWPSED--VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS  192 (309)
Q Consensus       115 ~W~sa~--~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~  192 (309)
                      -|+...  .+++.+.     .+|.+|||||||+|..+..+++.. +.+|+++|+++.+++.++++....+.     .+.+
T Consensus        44 ~we~~~m~~~a~~~~-----~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~-----~~~~  112 (236)
T 3orh_A           44 RWETPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH-----KVIP  112 (236)
T ss_dssp             GGGHHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSS-----EEEE
T ss_pred             HHHHHHHHHHHHhhc-----cCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCC-----ceEE
Confidence            477543  3444432     368899999999999999887753 46899999999999999998776654     4566


Q ss_pred             EEeeCCCCCCCCCCCCccEEEE-----cCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec------C---Cc----hH
Q 021691          193 MTLHWNQDDFPYIVDTFDVIVA-----SDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK------R---GD----SL  254 (309)
Q Consensus       193 ~~l~w~~~~~~~~~~~fDvIi~-----~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~------r---~~----~~  254 (309)
                      ...+|........+++||.|+.     ....++..+.+.+++.+.++|||||  .++++...      .   ..    ..
T Consensus       113 ~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG--~l~f~~~~~~~~~~~~~~~~~~~~~~  190 (236)
T 3orh_A          113 LKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGG--VLTYCNLTSWGELMKSKYSDITIMFE  190 (236)
T ss_dssp             EESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEE--EEEECCHHHHHHHTTTTCSCHHHHHH
T ss_pred             EeehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCC--EEEEEecCCchhhhhhhhhhhhhhhH
Confidence            6666654333445678999976     2233455678889999999999999  55554411      0   11    12


Q ss_pred             HHHHHHHHhCCCeEEE
Q 021691          255 DKFLEEIEGNHLHFSI  270 (309)
Q Consensus       255 ~~f~~~~~~~G~~~~~  270 (309)
                      +.....+.++||.++.
T Consensus       191 ~~~~~~L~eaGF~~~~  206 (236)
T 3orh_A          191 ETQVPALLEAGFRREN  206 (236)
T ss_dssp             HHTHHHHHHHTCCGGG
T ss_pred             HHHHHHHHHcCCeEEE
Confidence            2344567788987543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.49  E-value=2.8e-13  Score=122.29  Aligned_cols=134  Identities=13%  Similarity=0.095  Sum_probs=100.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||||||+|..+..+++.  +.+|+++|+++.+++.+++++..++... ..++.+...|.....  . .++||+|+
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~v~~~~~d~~~~~--~-~~~fD~v~  155 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADV-RDRCTLVQGDMSAFA--L-DKRFGTVV  155 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHH-HTTEEEEECBTTBCC--C-SCCEEEEE
T ss_pred             CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhccccc-ccceEEEeCchhcCC--c-CCCcCEEE
Confidence            3459999999999999998876  5689999999999999999988765210 025677777765432  2 57899998


Q ss_pred             Ec-CCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------------------------
Q 021691          214 AS-DCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSPKR----------------------------------------  250 (309)
Q Consensus       214 ~~-d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------------------------  250 (309)
                      ++ .++++..  +...+++.+.++|+|||  .+++.....                                        
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  233 (299)
T 3g2m_A          156 ISSGSINELDEADRRGLYASVREHLEPGG--KFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIH  233 (299)
T ss_dssp             ECHHHHTTSCHHHHHHHHHHHHHHEEEEE--EEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEE
T ss_pred             ECCcccccCCHHHHHHHHHHHHHHcCCCc--EEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEE
Confidence            65 4555543  57899999999999999  444433211                                        


Q ss_pred             -----------------CchHHHHHHHHHhCCCeEEEEeccC
Q 021691          251 -----------------GDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       251 -----------------~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                                       ..+.+++.+.++++||++..+..+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~  275 (299)
T 3g2m_A          234 PADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA  275 (299)
T ss_dssp             ESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             eccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence                             1267889999999999988776554

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.49  E-value=2.3e-14  Score=119.20  Aligned_cols=127  Identities=16%  Similarity=0.186  Sum_probs=87.5

Q ss_pred             cccHHHHHHHHhhCcC-cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          116 WPSEDVLAFFSLSHAD-MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       116 W~sa~~La~~l~~~~~-~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .|....+.+.+..... ..++++|||+|||+|..++.+++. +..+|+++|+++.+++.+++|+..+++.   .++.+..
T Consensus        12 rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~   87 (177)
T 2esr_A           12 RPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAE---NRFTLLK   87 (177)
T ss_dssp             ------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCG---GGEEEEC
T ss_pred             CcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCC---CceEEEE
Confidence            3444444444443322 457889999999999999998876 6679999999999999999999988762   3566665


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHH--HHHhcCCCeEEEEEeecC
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIK--FLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~--~lLk~~G~~~~ii~~~~r  250 (309)
                      .|+.+. .+...++||+|++.. .|+....+.+++.+.  ++|+++|  .+++.....
T Consensus        88 ~d~~~~-~~~~~~~fD~i~~~~-~~~~~~~~~~~~~l~~~~~L~~gG--~l~~~~~~~  141 (177)
T 2esr_A           88 MEAERA-IDCLTGRFDLVFLDP-PYAKETIVATIEALAAKNLLSEQV--MVVCETDKT  141 (177)
T ss_dssp             SCHHHH-HHHBCSCEEEEEECC-SSHHHHHHHHHHHHHHTTCEEEEE--EEEEEEETT
T ss_pred             CcHHHh-HHhhcCCCCEEEECC-CCCcchHHHHHHHHHhCCCcCCCc--EEEEEECCc
Confidence            554321 111235699999954 455566677888887  8899999  555555443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.49  E-value=1.3e-13  Score=124.19  Aligned_cols=132  Identities=12%  Similarity=0.143  Sum_probs=92.1

Q ss_pred             CCCCeEEEeCCCCChhhHHH----HHhcCCcEE--EEEcCCHHHHHHHHHHHHhc-cCCCCCCceEEEEeeCCCCCC---
Q 021691          133 FRSKRVIELGSGYGLAGLVI----AATTEALEV--VISDGNPQVVDYIQRNVDAN-SGAFGGTTVKSMTLHWNQDDF---  202 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~l----a~~~~~~~V--~~tD~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l~w~~~~~---  202 (309)
                      .++.+|||+|||+|.++..+    +...+...|  +++|.|++|++.+++++... ++    .++.+........+.   
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~----~~v~~~~~~~~~~~~~~~  126 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL----ENVKFAWHKETSSEYQSR  126 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC----TTEEEEEECSCHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC----CcceEEEEecchhhhhhh
Confidence            45679999999999766533    233344544  99999999999999988653 32    233332221111111   


Q ss_pred             ---CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------CchHHHH
Q 021691          203 ---PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----------------------GDSLDKF  257 (309)
Q Consensus       203 ---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------~~~~~~f  257 (309)
                         +..+++||+|+++.++|+..+...+++.++++|||||  .+++.....                      ..+...+
T Consensus       127 ~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (292)
T 2aot_A          127 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNA--KMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDL  204 (292)
T ss_dssp             HHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEE--EEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHH
T ss_pred             hccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCc--EEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHH
Confidence               1235789999999999999999999999999999999  444432211                      1245677


Q ss_pred             HHHHHhCCCeEEE
Q 021691          258 LEEIEGNHLHFSI  270 (309)
Q Consensus       258 ~~~~~~~G~~~~~  270 (309)
                      .+.++++||.+..
T Consensus       205 ~~~l~~aGf~~~~  217 (292)
T 2aot_A          205 TQMLDNLGLKYEC  217 (292)
T ss_dssp             HHHHHHHTCCEEE
T ss_pred             HHHHHHCCCceEE
Confidence            8889999998765

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.49  E-value=9.7e-13  Score=122.54  Aligned_cols=133  Identities=13%  Similarity=0.090  Sum_probs=106.4

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...++.+|||+|||+|..+..+++.++..+++++|. +.+++.+++++...++   ..++++...|.. ..  .+. .||
T Consensus       199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l---~~~v~~~~~d~~-~~--~p~-~~D  270 (369)
T 3gwz_A          199 DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL---ADRCEILPGDFF-ET--IPD-GAD  270 (369)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC---TTTEEEEECCTT-TC--CCS-SCS
T ss_pred             CCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc---CCceEEeccCCC-CC--CCC-Cce
Confidence            345678999999999999999999988889999999 9999999999988776   356888888765 22  222 799


Q ss_pred             EEEEcCCCCCcccHH--HHHHHHHHHHhcCCCeEEEEEeecC----------------------CchHHHHHHHHHhCCC
Q 021691          211 VIVASDCTFFKEFHK--DLARIIKFLLKKVGPSEALFFSPKR----------------------GDSLDKFLEEIEGNHL  266 (309)
Q Consensus       211 vIi~~d~ly~~~~~~--~ll~~l~~lLk~~G~~~~ii~~~~r----------------------~~~~~~f~~~~~~~G~  266 (309)
                      +|++..++++..+..  .+++.++++|+|||  .+++.....                      ..+.+++.+.++++||
T Consensus       271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf  348 (369)
T 3gwz_A          271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDS--RLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGL  348 (369)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCCTTC--EEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTE
T ss_pred             EEEhhhhhccCCHHHHHHHHHHHHHHcCCCC--EEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCC
Confidence            999999998876654  79999999999999  666655322                      1345677888899999


Q ss_pred             eEEEEec
Q 021691          267 HFSIIEN  273 (309)
Q Consensus       267 ~~~~~~~  273 (309)
                      +...+..
T Consensus       349 ~~~~~~~  355 (369)
T 3gwz_A          349 RVERSLP  355 (369)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            8866543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.49  E-value=7.7e-14  Score=119.20  Aligned_cols=147  Identities=7%  Similarity=0.036  Sum_probs=99.4

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC--------CCCCceEE
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA--------FGGTTVKS  192 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~--------~~~~~v~~  192 (309)
                      .|.+++... .+.++.+|||+|||+|..+..+|+.  +.+|+++|+|+.|++.++++...+...        ....++++
T Consensus        10 ~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~   86 (203)
T 1pjz_A           10 DLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI   86 (203)
T ss_dssp             HHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred             HHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEE
Confidence            344554332 3447889999999999999999987  569999999999999999875431000        00134566


Q ss_pred             EEeeCCCCCCCCCC-CCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEe--ecC--------CchHHHHHH
Q 021691          193 MTLHWNQDDFPYIV-DTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFS--PKR--------GDSLDKFLE  259 (309)
Q Consensus       193 ~~l~w~~~~~~~~~-~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~--~~r--------~~~~~~f~~  259 (309)
                      ...|....  +... ++||+|++..++++.  .....+++.+.++|+|||  .+++..  ...        ..+.+++.+
T Consensus        87 ~~~d~~~l--~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG--~~~l~~~~~~~~~~~~~~~~~~~~el~~  162 (203)
T 1pjz_A           87 WCGDFFAL--TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQAC--SGLLITLEYDQALLEGPPFSVPQTWLHR  162 (203)
T ss_dssp             EEECCSSS--THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEE--EEEEEEESSCSSSSSSCCCCCCHHHHHH
T ss_pred             EECccccC--CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCc--EEEEEEEecCccccCCCCCCCCHHHHHH
Confidence            66654332  2222 689999998777654  456678999999999999  433332  111        124567777


Q ss_pred             HHHhCCCeEEEEeccC
Q 021691          260 EIEGNHLHFSIIENYN  275 (309)
Q Consensus       260 ~~~~~G~~~~~~~~~~  275 (309)
                      .+.+ ||.+..++..+
T Consensus       163 ~~~~-gf~i~~~~~~~  177 (203)
T 1pjz_A          163 VMSG-NWEVTKVGGQD  177 (203)
T ss_dssp             TSCS-SEEEEEEEESS
T ss_pred             HhcC-CcEEEEecccc
Confidence            7777 99887766533

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.49  E-value=1.7e-13  Score=120.68  Aligned_cols=142  Identities=13%  Similarity=0.049  Sum_probs=105.3

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHh-cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAAT-TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~-~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      ++.......++++|||+|||+|..++.+++. .++.+|+++|.++.+++.+++|++.++..   .++.+...|+.+.   
T Consensus        84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~---  157 (255)
T 3mb5_A           84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD---DRVTIKLKDIYEG---  157 (255)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT---TTEEEECSCGGGC---
T ss_pred             HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC---CceEEEECchhhc---
Confidence            4444445678899999999999999999988 45789999999999999999999998873   3477776666532   


Q ss_pred             CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCC--CeEEEEeccCchhhh
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH--LHFSIIENYNAEIWK  280 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G--~~~~~~~~~~~~~~~  280 (309)
                      ....+||+|++.     ..+...+++.+.++|+|+|  .+++..+. ......+.+.+++.|  |....+.......|.
T Consensus       158 ~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG--~l~~~~~~-~~~~~~~~~~l~~~g~~f~~~~~~e~~~r~~~  228 (255)
T 3mb5_A          158 IEEENVDHVILD-----LPQPERVVEHAAKALKPGG--FFVAYTPC-SNQVMRLHEKLREFKDYFMKPRTINVLVFDQE  228 (255)
T ss_dssp             CCCCSEEEEEEC-----SSCGGGGHHHHHHHEEEEE--EEEEEESS-HHHHHHHHHHHHHTGGGBSCCEEECCCCCCEE
T ss_pred             cCCCCcCEEEEC-----CCCHHHHHHHHHHHcCCCC--EEEEEECC-HHHHHHHHHHHHHcCCCccccEEEEEeeeeeE
Confidence            334679999984     3345678999999999999  55555443 345667888899999  865443333333343

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.49  E-value=2.2e-13  Score=120.48  Aligned_cols=107  Identities=9%  Similarity=-0.027  Sum_probs=81.1

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+.+.+....  .++++|||+|||+|..+..+++.  +.+|+++|+++.+++.++++..         ++.+...|....
T Consensus        39 ~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~d~~~~  105 (263)
T 3pfg_A           39 DLAALVRRHS--PKAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP---------DAVLHHGDMRDF  105 (263)
T ss_dssp             HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTTC
T ss_pred             HHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC---------CCEEEECChHHC
Confidence            3444444332  35689999999999999998776  4589999999999999998743         345555655432


Q ss_pred             CCCCCCCCccEEEEcC-CCCCc---ccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          201 DFPYIVDTFDVIVASD-CTFFK---EFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d-~ly~~---~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      .  . .++||+|++.. ++++.   .+...+++.+.++|+|||  .+++
T Consensus       106 ~--~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG--~l~i  149 (263)
T 3pfg_A          106 S--L-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDG--VVVV  149 (263)
T ss_dssp             C--C-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEE--EEEE
T ss_pred             C--c-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCc--EEEE
Confidence            2  2 57899999987 88776   467788999999999999  4444

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.49  E-value=3.2e-13  Score=121.84  Aligned_cols=107  Identities=18%  Similarity=0.156  Sum_probs=88.2

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhc-cCCCCCCceEEEEeeCCCCCCCC----CC
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDAN-SGAFGGTTVKSMTLHWNQDDFPY----IV  206 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l~w~~~~~~~----~~  206 (309)
                      .++++|||+|||+|..+..+++.+ ++.+|+++|+++.+++.+++++..+ +.   ..++.+...+........    ..
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~  111 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT---YKNVSFKISSSDDFKFLGADSVDK  111 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C---CTTEEEEECCTTCCGGGCTTTTTS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC---CCceEEEEcCHHhCCccccccccC
Confidence            368899999999999999999875 7889999999999999999999886 22   246777777765433211    12


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      ++||+|+++.++++. +...+++.+.++|+|||  .+++
T Consensus       112 ~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG--~l~i  147 (299)
T 3g5t_A          112 QKIDMITAVECAHWF-DFEKFQRSAYANLRKDG--TIAI  147 (299)
T ss_dssp             SCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEE--EEEE
T ss_pred             CCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCc--EEEE
Confidence            689999999999999 99999999999999999  4544

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.48  E-value=6.6e-15  Score=125.49  Aligned_cols=142  Identities=15%  Similarity=0.117  Sum_probs=82.7

Q ss_pred             HHHHHHHHhhCcCc-CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          119 EDVLAFFSLSHADM-FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       119 a~~La~~l~~~~~~-~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      +..+.+++...... .++++|||+|||+|..++.+++..+..+|+++|+++.+++.+++|+..++.     ++.+...|+
T Consensus        14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~d~   88 (215)
T 4dzr_A           14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-----VVDWAAADG   88 (215)
T ss_dssp             HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHHH
T ss_pred             HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-----ceEEEEcch
Confidence            44555555554332 578899999999999999999987777999999999999999999887764     233333333


Q ss_pred             CCCCCC--CCCCCccEEEEcCCCCCcccH--------------------------HHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          198 NQDDFP--YIVDTFDVIVASDCTFFKEFH--------------------------KDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       198 ~~~~~~--~~~~~fDvIi~~d~ly~~~~~--------------------------~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      ......  ...++||+|+++.+++.....                          ..+++.+.++|+|+|  .++++...
T Consensus        89 ~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~  166 (215)
T 4dzr_A           89 IEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGR--AGVFLEVG  166 (215)
T ss_dssp             HHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSS--EEEEEECT
T ss_pred             HhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCC--eEEEEEEC
Confidence            221000  012789999997665543322                          677888899999999  53444433


Q ss_pred             CCchHHHHHHHHH--hCCCeE
Q 021691          250 RGDSLDKFLEEIE--GNHLHF  268 (309)
Q Consensus       250 r~~~~~~f~~~~~--~~G~~~  268 (309)
                       ....+.+.+.+.  +.||..
T Consensus       167 -~~~~~~~~~~l~~~~~gf~~  186 (215)
T 4dzr_A          167 -HNQADEVARLFAPWRERGFR  186 (215)
T ss_dssp             -TSCHHHHHHHTGGGGGGTEE
T ss_pred             -CccHHHHHHHHHHhhcCCce
Confidence             234567777888  788864

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.48  E-value=4.5e-13  Score=118.92  Aligned_cols=111  Identities=10%  Similarity=-0.001  Sum_probs=82.9

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-
Q 021691          124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-  202 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-  202 (309)
                      +.+.......++.+|||||||+|..++.+|+.  +.+|+++|.|+.|++.+++++..+..          ..+|..... 
T Consensus        35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v----------~~~~~~~~~~  102 (261)
T 3iv6_A           35 ENDIFLENIVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCV----------TIDLLDITAE  102 (261)
T ss_dssp             HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCC----------EEEECCTTSC
T ss_pred             HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccc----------eeeeeecccc
Confidence            44455556678899999999999999999886  56999999999999999998765411          223322222 


Q ss_pred             --CCCCCCccEEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          203 --PYIVDTFDVIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       203 --~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                        ....++||+|+++.++++  .+....+++.+.++| |||  .+++....
T Consensus       103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG--~l~lS~~~  150 (261)
T 3iv6_A          103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSG--TVRASVKL  150 (261)
T ss_dssp             CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTS--EEEEEEEB
T ss_pred             cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCc--EEEEEecc
Confidence              122468999999988865  456778999999999 999  55555443

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.48  E-value=1.2e-12  Score=121.72  Aligned_cols=133  Identities=15%  Similarity=0.061  Sum_probs=104.7

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..+++..+..+++++|+ +.+++.+++++..+++.   .++++...|+.+ .  . ...||+
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~-~--~-~~~~D~  251 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA---DRVTVAEGDFFK-P--L-PVTADV  251 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---TTEEEEECCTTS-C--C-SCCEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC---CceEEEeCCCCC-c--C-CCCCCE
Confidence            44678999999999999999999887789999999 99999999999888762   467887777653 1  1 234999


Q ss_pred             EEEcCCCCCcccH--HHHHHHHHHHHhcCCCeEEEEEee--cC-----------------------CchHHHHHHHHHhC
Q 021691          212 IVASDCTFFKEFH--KDLARIIKFLLKKVGPSEALFFSP--KR-----------------------GDSLDKFLEEIEGN  264 (309)
Q Consensus       212 Ii~~d~ly~~~~~--~~ll~~l~~lLk~~G~~~~ii~~~--~r-----------------------~~~~~~f~~~~~~~  264 (309)
                      |++..++|+..+.  ..+++.+.++|+|||  .+++...  ..                       ..+.+++.+.++++
T Consensus       252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a  329 (374)
T 1qzz_A          252 VLLSFVLLNWSDEDALTILRGCVRALEPGG--RLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA  329 (374)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT
T ss_pred             EEEeccccCCCHHHHHHHHHHHHHhcCCCc--EEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHC
Confidence            9999999876554  489999999999999  5665544  21                       13566788889999


Q ss_pred             CCeEEEEecc
Q 021691          265 HLHFSIIENY  274 (309)
Q Consensus       265 G~~~~~~~~~  274 (309)
                      ||.+..+...
T Consensus       330 Gf~~~~~~~~  339 (374)
T 1qzz_A          330 GLALASERTS  339 (374)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCceEEEEEC
Confidence            9988766543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.47  E-value=7.3e-13  Score=110.85  Aligned_cols=125  Identities=22%  Similarity=0.259  Sum_probs=96.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.+++++.         ++.+...+....  +...++||+|
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~---------~~~~~~~d~~~~--~~~~~~~D~i  111 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP---------EARWVVGDLSVD--QISETDFDLI  111 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTTS--CCCCCCEEEE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC---------CCcEEEcccccC--CCCCCceeEE
Confidence            36789999999999999998886  5699999999999999988752         245555554432  2335789999


Q ss_pred             EEc-CCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeec-CCchHHHHHHHHHhCCCeEEEEe
Q 021691          213 VAS-DCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPK-RGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       213 i~~-d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~-r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      +++ +++++.  +....+++.+.++|+++|  .+++..+. +..+...+.+.+++.||.+....
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G--~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  173 (195)
T 3cgg_A          112 VSAGNVMGFLAEDGREPALANIHRALGADG--RAVIGFGAGRGWVFGDFLEVAERVGLELENAF  173 (195)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEEETTSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred             EECCcHHhhcChHHHHHHHHHHHHHhCCCC--EEEEEeCCCCCcCHHHHHHHHHHcCCEEeeee
Confidence            998 666654  556889999999999999  55554443 34677889999999999986654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.47  E-value=1e-12  Score=120.19  Aligned_cols=132  Identities=16%  Similarity=0.235  Sum_probs=104.6

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+++..+..+|+++|.+ .+++.+++++..+++.   .++++...|.....  . ...||+|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~--~-~~~~D~v  236 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA---SRYHTIAGSAFEVD--Y-GNDYDLV  236 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG---GGEEEEESCTTTSC--C-CSCEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC---cceEEEecccccCC--C-CCCCcEE
Confidence            46789999999999999999998888899999999 9999999999888762   45788777765432  2 2349999


Q ss_pred             EEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC-------------------------CchHHHHHHHHHhCC
Q 021691          213 VASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR-------------------------GDSLDKFLEEIEGNH  265 (309)
Q Consensus       213 i~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-------------------------~~~~~~f~~~~~~~G  265 (309)
                      ++..++|+.  +....+++.+.++|+|||  .+++.....                         ..+.+++.+.++++|
T Consensus       237 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aG  314 (335)
T 2r3s_A          237 LLPNFLHHFDVATCEQLLRKIKTALAVEG--KVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAG  314 (335)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTT
T ss_pred             EEcchhccCCHHHHHHHHHHHHHhCCCCc--EEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCC
Confidence            999999886  455799999999999999  666655322                         123567778888899


Q ss_pred             CeEEEEec
Q 021691          266 LHFSIIEN  273 (309)
Q Consensus       266 ~~~~~~~~  273 (309)
                      |....+..
T Consensus       315 f~~~~~~~  322 (335)
T 2r3s_A          315 FSHSQLHS  322 (335)
T ss_dssp             CSEEEEEC
T ss_pred             CCeeeEEE
Confidence            98766544

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.47  E-value=3.5e-13  Score=116.87  Aligned_cols=127  Identities=9%  Similarity=0.021  Sum_probs=97.1

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|.+|||+|||+|.+++.+|+..++.+|+++|+++.+++.+++|++.|++.   .++.+...|+-..-.  ...+||+|
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~---~~i~~~~~d~l~~l~--~~~~~D~I   88 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK---EKIQVRLANGLAAFE--ETDQVSVI   88 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT---TTEEEEECSGGGGCC--GGGCCCEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---ceEEEEECchhhhcc--cCcCCCEE
Confidence            3678999999999999999999766779999999999999999999999984   467777776532211  11269988


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEE
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      +.+..  ....+..++......|+++|  .+++ .+..  ......+.+.++||.+...
T Consensus        89 viaG~--Gg~~i~~Il~~~~~~L~~~~--~lVl-q~~~--~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           89 TIAGM--GGRLIARILEEGLGKLANVE--RLIL-QPNN--REDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             EEEEE--CHHHHHHHHHHTGGGCTTCC--EEEE-EESS--CHHHHHHHHHHTTEEEEEE
T ss_pred             EEcCC--ChHHHHHHHHHHHHHhCCCC--EEEE-ECCC--CHHHHHHHHHHCCCEEEEE
Confidence            87544  23446788888888898887  4444 5442  4567788889999987654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.47  E-value=3.8e-14  Score=118.46  Aligned_cols=129  Identities=13%  Similarity=0.082  Sum_probs=93.3

Q ss_pred             ecccHHHHHHHHhhCc-CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          115 HWPSEDVLAFFSLSHA-DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~-~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      .-|....+.+.+.... ...++++|||+|||+|..++.+++ .+..+|+++|.++.+++.+++|+..+++.   .++.+.
T Consensus        24 ~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~   99 (187)
T 2fhp_A           24 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEP---EKFEVR   99 (187)
T ss_dssp             SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEE
T ss_pred             cCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCC---cceEEE
Confidence            3455566665555443 345788999999999999998777 45679999999999999999999998762   356666


Q ss_pred             EeeCCCCCC--CCCCCCccEEEEcCCCCCcccHHHHHHHH--HHHHhcCCCeEEEEEeecC
Q 021691          194 TLHWNQDDF--PYIVDTFDVIVASDCTFFKEFHKDLARII--KFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       194 ~l~w~~~~~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l--~~lLk~~G~~~~ii~~~~r  250 (309)
                      ..|+.+...  +...++||+|++..+ |+.......++.+  .++|+++|  .+++..+..
T Consensus       100 ~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG--~l~~~~~~~  157 (187)
T 2fhp_A          100 KMDANRALEQFYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEA--VIVCETDKT  157 (187)
T ss_dssp             ESCHHHHHHHHHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEE--EEEEEEETT
T ss_pred             ECcHHHHHHHHHhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccCCCC--EEEEEeCCc
Confidence            665543111  011468999999655 6566777888888  77899999  555555443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.47  E-value=5.2e-13  Score=113.16  Aligned_cols=127  Identities=16%  Similarity=0.190  Sum_probs=96.2

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++ +|||+|||+|..+..+++.  +.+|+++|.++.+++.+++++..++.     ++.+...+....  +...++||+|+
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~--~~~~~~fD~v~   99 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-----KITTVQSNLADF--DIVADAWEGIV   99 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-----CEEEECCBTTTB--SCCTTTCSEEE
T ss_pred             CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-----ceEEEEcChhhc--CCCcCCccEEE
Confidence            56 9999999999999988775  46999999999999999999887754     455555555432  33457899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec---------------CCchHHHHHHHHHhCCCeEEEEecc
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK---------------RGDSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~---------------r~~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                      ++.+.+...+...+++.+.++|+|||  .+++....               ...+.+++.+.++  ||.+..++..
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~  171 (202)
T 2kw5_A          100 SIFCHLPSSLRQQLYPKVYQGLKPGG--VFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNL  171 (202)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTCCSSE--EEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred             EEhhcCCHHHHHHHHHHHHHhcCCCc--EEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEE
Confidence            97655545678899999999999999  55555421               1235566777776  9988776553

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.47  E-value=1.5e-13  Score=116.94  Aligned_cols=122  Identities=13%  Similarity=0.184  Sum_probs=91.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||+|..++.++...++.+|+++|.++.+++.+++++..++..    ++.+...++....   ..++||+|+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~~---~~~~~D~i~  137 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE----NIEPVQSRVEEFP---SEPPFDGVI  137 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS----SEEEEECCTTTSC---CCSCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CeEEEecchhhCC---ccCCcCEEE
Confidence            578999999999999999998877889999999999999999999988762    3777777765432   246899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      +...    .....+++.+.++|+|||  .+++.....  ..+...+.+.  ||....+.
T Consensus       138 ~~~~----~~~~~~l~~~~~~L~~gG--~l~~~~~~~--~~~~~~~~~~--g~~~~~~~  186 (207)
T 1jsx_A          138 SRAF----ASLNDMVSWCHHLPGEQG--RFYALKGQM--PEDEIALLPE--EYQVESVV  186 (207)
T ss_dssp             CSCS----SSHHHHHHHHTTSEEEEE--EEEEEESSC--CHHHHHTSCT--TEEEEEEE
T ss_pred             Eecc----CCHHHHHHHHHHhcCCCc--EEEEEeCCC--chHHHHHHhc--CCceeeee
Confidence            8542    456889999999999999  454443222  2233333332  77765543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.46  E-value=8.9e-14  Score=120.13  Aligned_cols=133  Identities=17%  Similarity=0.104  Sum_probs=92.6

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC----CC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY----IV  206 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~----~~  206 (309)
                      ..++++|||+|||+|..++.+|+.++ +.+|+++|.++.+++.+++|+..+++.   .++++...+..+.....    ..
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~  132 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ---DKVTILNGASQDLIPQLKKKYDV  132 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHHHHGGGTTTTSCC
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC---CceEEEECCHHHHHHHHHHhcCC
Confidence            34678999999999999999988654 679999999999999999999998873   35777666542211111    12


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCC-CeEEEE
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH-LHFSII  271 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G-~~~~~~  271 (309)
                      ++||+|++.....+......++..+ ++|+|||   +++++.........|.+.+++.. |....+
T Consensus       133 ~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG---~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~  194 (221)
T 3u81_A          133 DTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGT---VLLADNVIVPGTPDFLAYVRGSSSFECTHY  194 (221)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTC---EEEESCCCCCCCHHHHHHHHHCTTEEEEEE
T ss_pred             CceEEEEEcCCcccchHHHHHHHhc-cccCCCe---EEEEeCCCCcchHHHHHHHhhCCCceEEEc
Confidence            6899999965444444444566666 9999999   44444333333467777777653 444433

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.46  E-value=1.1e-12  Score=121.95  Aligned_cols=131  Identities=18%  Similarity=0.204  Sum_probs=101.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      .+++|||+|||+|..+..+++.++..+|+++|. +.+++.+++++...+..   .++++...|......+.+ ++||+|+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~p-~~~D~v~  253 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS---ERIHGHGANLLDRDVPFP-TGFDAVW  253 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG---GGEEEEECCCCSSSCCCC-CCCSEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc---cceEEEEccccccCCCCC-CCcCEEE
Confidence            568999999999999999999888889999998 99999999998877652   467888777654321222 6899999


Q ss_pred             EcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------------CchHHHHHHHHHh
Q 021691          214 ASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSPKR----------------------------GDSLDKFLEEIEG  263 (309)
Q Consensus       214 ~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------------~~~~~~f~~~~~~  263 (309)
                      +..++|+..  ....+++.+++.|+|||  .+++.....                            ..+.+++.+.+++
T Consensus       254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~  331 (363)
T 3dp7_A          254 MSQFLDCFSEEEVISILTRVAQSIGKDS--KVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIEN  331 (363)
T ss_dssp             EESCSTTSCHHHHHHHHHHHHHHCCTTC--EEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHT
T ss_pred             EechhhhCCHHHHHHHHHHHHHhcCCCc--EEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHH
Confidence            999998654  34678999999999999  666654211                            1245677788888


Q ss_pred             CCCeEEEE
Q 021691          264 NHLHFSII  271 (309)
Q Consensus       264 ~G~~~~~~  271 (309)
                      +||....+
T Consensus       332 AGf~~v~~  339 (363)
T 3dp7_A          332 AGLEVEEI  339 (363)
T ss_dssp             TTEEESCC
T ss_pred             cCCeEEEE
Confidence            88876443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.46  E-value=3.8e-12  Score=112.04  Aligned_cols=134  Identities=14%  Similarity=0.084  Sum_probs=86.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC-CCCCC---CCCc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD-DFPYI---VDTF  209 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~-~~~~~---~~~f  209 (309)
                      ++.+|||+|||+|.+++.+++..++.+|+++|+++.|++.+++|+..+++.   .++.+...|.... .....   +.+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS---DLIKVVKVPQKTLLMDALKEESEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC---ccEEEEEcchhhhhhhhhhcccCCcc
Confidence            578999999999999998888766689999999999999999999998873   3577776664321 11111   2589


Q ss_pred             cEEEEcCCCCCcc-c--------------HHHHHHHHHHHHhcCCCe-----------------EEEEEeecCCchHHHH
Q 021691          210 DVIVASDCTFFKE-F--------------HKDLARIIKFLLKKVGPS-----------------EALFFSPKRGDSLDKF  257 (309)
Q Consensus       210 DvIi~~d~ly~~~-~--------------~~~ll~~l~~lLk~~G~~-----------------~~ii~~~~r~~~~~~f  257 (309)
                      |+|+++.+++... .              ...++..+.++|+|||..                 ..+............+
T Consensus       142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  221 (254)
T 2h00_A          142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPL  221 (254)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHH
T ss_pred             cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHH
Confidence            9999976655432 0              112344444445554411                 0222333334445677


Q ss_pred             HHHHHhCCCeEEE
Q 021691          258 LEEIEGNHLHFSI  270 (309)
Q Consensus       258 ~~~~~~~G~~~~~  270 (309)
                      .+.++++||....
T Consensus       222 ~~~l~~~Gf~~v~  234 (254)
T 2h00_A          222 KEELRIQGVPKVT  234 (254)
T ss_dssp             HHHHHHTTCSEEE
T ss_pred             HHHHHHcCCCceE
Confidence            8888899987543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.46  E-value=2.3e-13  Score=120.74  Aligned_cols=108  Identities=15%  Similarity=0.020  Sum_probs=82.3

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      |.+++....  ..+.+|||||||+|..+..++..  +.+|+++|.|+.|++.+++          ..++.+...+..  .
T Consensus        29 l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~----------~~~v~~~~~~~e--~   92 (257)
T 4hg2_A           29 LFRWLGEVA--PARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR----------HPRVTYAVAPAE--D   92 (257)
T ss_dssp             HHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC----------CTTEEEEECCTT--C
T ss_pred             HHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh----------cCCceeehhhhh--h
Confidence            455665543  24569999999999999998876  5699999999999987653          135666665543  3


Q ss_pred             CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      .+..+++||+|+++.++|+. +.+.+++.++++|||||  .+++...
T Consensus        93 ~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG--~l~~~~~  136 (257)
T 4hg2_A           93 TGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGA--VFAAVTY  136 (257)
T ss_dssp             CCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEE--EEEEEEE
T ss_pred             hcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCC--EEEEEEC
Confidence            44557899999999999876 47889999999999999  5545443

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.46  E-value=7.3e-13  Score=117.13  Aligned_cols=150  Identities=13%  Similarity=-0.040  Sum_probs=100.2

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh----------ccCC---CC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA----------NSGA---FG  186 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~----------n~~~---~~  186 (309)
                      ..|.+++.......++.+|||+|||+|..+..+|+.  +.+|+|+|+|+.|++.++++...          ++..   ..
T Consensus        54 ~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~  131 (252)
T 2gb4_A           54 QLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS  131 (252)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             HHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccC
Confidence            345566544322346789999999999999999886  56999999999999999765431          0000   01


Q ss_pred             CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeec--C--------CchH
Q 021691          187 GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPK--R--------GDSL  254 (309)
Q Consensus       187 ~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~--r--------~~~~  254 (309)
                      ..++.+...|....... ..++||+|++..++++.  .....+++.+.++|+|||  .+++.+..  .        ..+.
T Consensus       132 ~~~i~~~~~D~~~l~~~-~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG--~l~l~~~~~~~~~~~g~~~~~~~  208 (252)
T 2gb4_A          132 SGSISLYCCSIFDLPRA-NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEF--QYLVAVLSYDPTKHAGPPFYVPS  208 (252)
T ss_dssp             TSSEEEEESCTTTGGGG-CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEE--EEEEEEEECCTTSCCCSSCCCCH
T ss_pred             CCceEEEECccccCCcc-cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCe--EEEEEEEecCCccCCCCCCCCCH
Confidence            23566666655432211 12689999998777653  456789999999999999  44333211  0        1355


Q ss_pred             HHHHHHHHhCCCeEEEEeccC
Q 021691          255 DKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       255 ~~f~~~~~~~G~~~~~~~~~~  275 (309)
                      +++.+.+.. +|.+...+.++
T Consensus       209 ~el~~~l~~-~f~v~~~~~~~  228 (252)
T 2gb4_A          209 AELKRLFGT-KCSMQCLEEVD  228 (252)
T ss_dssp             HHHHHHHTT-TEEEEEEEEEE
T ss_pred             HHHHHHhhC-CeEEEEEeccc
Confidence            677777776 58887666443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.46  E-value=6.7e-13  Score=115.47  Aligned_cols=95  Identities=20%  Similarity=0.190  Sum_probs=76.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++++|||+|||+|..+..+++.   .+|+++|.++.+++.+++++..++.     ++.+...+.....  . .++||+|+
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~~--~-~~~fD~v~  101 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNR-----HVDFWVQDMRELE--L-PEPVDAIT  101 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEECCGGGCC--C-SSCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCC-----ceEEEEcChhhcC--C-CCCcCEEE
Confidence            5689999999999999887765   6999999999999999999887653     3555555544322  2 36899999


Q ss_pred             EcC-CCCCc---ccHHHHHHHHHHHHhcCC
Q 021691          214 ASD-CTFFK---EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       214 ~~d-~ly~~---~~~~~ll~~l~~lLk~~G  239 (309)
                      +.. ++++.   .....+++.+.++|+|||
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG  131 (243)
T 3d2l_A          102 ILCDSLNYLQTEADVKQTFDSAARLLTDGG  131 (243)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHHHEEEEE
T ss_pred             EeCCchhhcCCHHHHHHHHHHHHHhcCCCe
Confidence            974 77665   667889999999999999

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.46  E-value=4.1e-13  Score=114.26  Aligned_cols=106  Identities=16%  Similarity=0.104  Sum_probs=82.0

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..++.++.. .+.+|+++|.++.+++.+++++..++.     ++.+...+...  .+...++||+
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~--~~~~~~~fD~   92 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNF-----KLNISKGDIRK--LPFKDESMSF   92 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTC-----CCCEEECCTTS--CCSCTTCEEE
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCC-----ceEEEECchhh--CCCCCCceeE
Confidence            346789999999999885544444 356999999999999999999887653     34555555543  2334578999


Q ss_pred             EEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          212 IVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |++..++++.  .+...+++.+.++|+|||  .+++..
T Consensus        93 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~  128 (209)
T 2p8j_A           93 VYSYGTIFHMRKNDVKEAIDEIKRVLKPGG--LACINF  128 (209)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEE
T ss_pred             EEEcChHHhCCHHHHHHHHHHHHHHcCCCc--EEEEEE
Confidence            9999998887  788999999999999999  455444

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.46  E-value=6.3e-13  Score=118.76  Aligned_cols=133  Identities=13%  Similarity=0.071  Sum_probs=99.4

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY  204 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~  204 (309)
                      +.......++.+|||+|||+|..++.+++.. ++.+|+++|.++.+++.+++|+..+++.   .++.+...|+.+.   .
T Consensus       104 i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~---~  177 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI---ERVTIKVRDISEG---F  177 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG---GGEEEECCCGGGC---C
T ss_pred             HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC---CCEEEEECCHHHc---c
Confidence            3333456678999999999999999999884 4679999999999999999999988752   3566666655432   2


Q ss_pred             CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      ..++||+|++.     ......+++.+.++|+++|  .+++..+. .....++.+.+++.||....+.
T Consensus       178 ~~~~~D~V~~~-----~~~~~~~l~~~~~~L~pgG--~l~~~~~~-~~~~~~~~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          178 DEKDVDALFLD-----VPDPWNYIDKCWEALKGGG--RFATVCPT-TNQVQETLKKLQELPFIRIEVW  237 (277)
T ss_dssp             SCCSEEEEEEC-----CSCGGGTHHHHHHHEEEEE--EEEEEESS-HHHHHHHHHHHHHSSEEEEEEE
T ss_pred             cCCccCEEEEC-----CcCHHHHHHHHHHHcCCCC--EEEEEeCC-HHHHHHHHHHHHHCCCceeEEE
Confidence            33579999983     2345678899999999999  55555543 2345677888888999765443

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.45  E-value=1.7e-13  Score=123.10  Aligned_cols=138  Identities=17%  Similarity=0.201  Sum_probs=96.0

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-------------C-C-----------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-------------G-G-----------  187 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-------------~-~-----------  187 (309)
                      .++.+|||||||+|...+.++. .++.+|+++|+++.|++.+++++.......             + .           
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            4788999999999996655444 345699999999999999988764321000             0 0           


Q ss_pred             -CceEEEEeeCCC-CCC---CCCCCCccEEEEcCCCCC----cccHHHHHHHHHHHHhcCCCeEEEEEee----------
Q 021691          188 -TTVKSMTLHWNQ-DDF---PYIVDTFDVIVASDCTFF----KEFHKDLARIIKFLLKKVGPSEALFFSP----------  248 (309)
Q Consensus       188 -~~v~~~~l~w~~-~~~---~~~~~~fDvIi~~d~ly~----~~~~~~ll~~l~~lLk~~G~~~~ii~~~----------  248 (309)
                       ..+.+...|... ...   ....++||+|+++.++++    ..+...+++.+.++|||||  .+++...          
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG--~l~~~~~~~~~~~~~~~  226 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGG--HLLLIGALEESWYLAGE  226 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEE--EEEEEEEESCCEEEETT
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCC--EEEEEEecCcceEEcCC
Confidence             012333334433 111   123457999999999988    6688999999999999999  5554321          


Q ss_pred             ----cCCchHHHHHHHHHhCCCeEEEEec
Q 021691          249 ----KRGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       249 ----~r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                          .+..+.+.+.+.++++||.+..+..
T Consensus       227 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~  255 (289)
T 2g72_A          227 ARLTVVPVSEEEVREALVRSGYKVRDLRT  255 (289)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             eeeeeccCCHHHHHHHHHHcCCeEEEeeE
Confidence                1234678899999999999876654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.45  E-value=1.2e-12  Score=113.67  Aligned_cols=136  Identities=16%  Similarity=0.147  Sum_probs=92.9

Q ss_pred             hhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCC
Q 021691          127 LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPY  204 (309)
Q Consensus       127 ~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~  204 (309)
                      .....+.++.+|||+|||+|..++.+++..+..+|+++|.++.+++.+++++..+      .++.+...+.....  .+.
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~v~~~~~d~~~~~~~~~~  140 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER------ENIIPILGDANKPQEYANI  140 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC------TTEEEEECCTTCGGGGTTT
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC------CCeEEEECCCCCccccccc
Confidence            3334455789999999999999999999877679999999999999999886654      24566555554311  122


Q ss_pred             CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec--CCch------HHHHHHHHHhCCCeEEEEec
Q 021691          205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK--RGDS------LDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~--r~~~------~~~f~~~~~~~G~~~~~~~~  273 (309)
                       ..+||+|+. ++ ........+++.+.++|+|+|  .+++....  ...+      ..+-+..++++||.+.....
T Consensus       141 -~~~~D~v~~-~~-~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~l~~l~~~Gf~~~~~~~  212 (230)
T 1fbn_A          141 -VEKVDVIYE-DV-AQPNQAEILIKNAKWFLKKGG--YGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVD  212 (230)
T ss_dssp             -SCCEEEEEE-CC-CSTTHHHHHHHHHHHHEEEEE--EEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             -CccEEEEEE-ec-CChhHHHHHHHHHHHhCCCCc--EEEEEEecCCCCCCCCHHHhhHHHHHHHHHCCCEEEEEEc
Confidence             268999994 32 223344788999999999999  44443211  1111      21223377888998765544

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.45  E-value=6.2e-13  Score=116.94  Aligned_cols=134  Identities=16%  Similarity=0.133  Sum_probs=101.4

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhc-cCCCCCCceEEEEeeCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDAN-SGAFGGTTVKSMTLHWNQDDF  202 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n-~~~~~~~~v~~~~l~w~~~~~  202 (309)
                      ++.......++.+|||+|||+|..++.+++.. ++.+|+++|.++.+++.+++++..+ +.    .++.+...|+.+.  
T Consensus        87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~----~~v~~~~~d~~~~--  160 (258)
T 2pwy_A           87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV----ENVRFHLGKLEEA--  160 (258)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC----CCEEEEESCGGGC--
T ss_pred             HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC----CCEEEEECchhhc--
Confidence            34444456688999999999999999998874 4679999999999999999999887 63    3567766665433  


Q ss_pred             CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      +...++||+|++.     ..+...+++.+.++|+++|  .+++..+.. ....++.+.+++.||....+.
T Consensus       161 ~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG--~l~~~~~~~-~~~~~~~~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          161 ELEEAAYDGVALD-----LMEPWKVLEKAALALKPDR--FLVAYLPNI-TQVLELVRAAEAHPFRLERVL  222 (258)
T ss_dssp             CCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEE--EEEEEESCH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred             CCCCCCcCEEEEC-----CcCHHHHHHHHHHhCCCCC--EEEEEeCCH-HHHHHHHHHHHHCCCceEEEE
Confidence            2334689999983     3345678999999999999  555555433 456678888889999865443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.45  E-value=8.1e-13  Score=121.84  Aligned_cols=111  Identities=19%  Similarity=0.240  Sum_probs=89.1

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      ..+.+.......++++|||+|||+|.+++.+++. ++.+|+++|.++ +++.++++++.|++.   .++.+...+..+. 
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~~~~-  125 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLE---DTITLIKGKIEEV-  125 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCT---TTEEEEESCTTTS-
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCC---CcEEEEEeeHHHh-
Confidence            3455666666778999999999999999998886 667999999996 999999999999873   4677776665433 


Q ss_pred             CCCCCCCccEEEEcC---CCCCcccHHHHHHHHHHHHhcCC
Q 021691          202 FPYIVDTFDVIVASD---CTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d---~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                       +...++||+|++..   .+.+....+.++..+.++|+|||
T Consensus       126 -~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG  165 (340)
T 2fyt_A          126 -HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGG  165 (340)
T ss_dssp             -CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEE
T ss_pred             -cCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCc
Confidence             33347899999976   34556778889999999999999

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.45  E-value=1.4e-12  Score=120.86  Aligned_cols=133  Identities=13%  Similarity=0.191  Sum_probs=103.8

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...++++|||+|||+|..+..+++..+..+|+++|. +.+++.+++++..++..   .++++...|.....  .  ..+|
T Consensus       187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~--~--~~~D  258 (359)
T 1x19_A          187 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA---DRMRGIAVDIYKES--Y--PEAD  258 (359)
T ss_dssp             CCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT---TTEEEEECCTTTSC--C--CCCS
T ss_pred             CCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC---CCEEEEeCccccCC--C--CCCC
Confidence            345678999999999999999999888889999999 99999999999988763   45777777765432  2  2349


Q ss_pred             EEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecC----------------------C----chHHHHHHHHH
Q 021691          211 VIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKR----------------------G----DSLDKFLEEIE  262 (309)
Q Consensus       211 vIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------~----~~~~~f~~~~~  262 (309)
                      +|++..++++..+  ...+++.++++|+|||  .+++.....                      .    .+.+++.+.++
T Consensus       259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~  336 (359)
T 1x19_A          259 AVLFCRILYSANEQLSTIMCKKAFDAMRSGG--RLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILE  336 (359)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCCTTC--EEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHH
T ss_pred             EEEEechhccCCHHHHHHHHHHHHHhcCCCC--EEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHH
Confidence            9999999987665  7889999999999999  565555211                      1    35567777788


Q ss_pred             hCCCeEEEEec
Q 021691          263 GNHLHFSIIEN  273 (309)
Q Consensus       263 ~~G~~~~~~~~  273 (309)
                      ++||....+..
T Consensus       337 ~aGf~~v~~~~  347 (359)
T 1x19_A          337 SLGYKDVTMVR  347 (359)
T ss_dssp             HHTCEEEEEEE
T ss_pred             HCCCceEEEEe
Confidence            88887655543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.45  E-value=7.3e-13  Score=115.11  Aligned_cols=128  Identities=11%  Similarity=0.065  Sum_probs=97.3

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|.+|||+|||+|.+++.+|+..++.+|+++|+++.+++.+++|++.|++.   .++.+...|+-+..  ....+||+|
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~---~~I~~~~gD~l~~~--~~~~~~D~I   94 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT---SKIDVRLANGLSAF--EEADNIDTI   94 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT---TTEEEEECSGGGGC--CGGGCCCEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECchhhcc--ccccccCEE
Confidence            3678999999999999999999766779999999999999999999999983   46787777654332  112379998


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      +.+..-  ...+..++......|+++|  .++ .++..  ..+...+.+.++||.+....
T Consensus        95 viaGmG--g~lI~~IL~~~~~~l~~~~--~lI-lqp~~--~~~~lr~~L~~~Gf~i~~E~  147 (230)
T 3lec_A           95 TICGMG--GRLIADILNNDIDKLQHVK--TLV-LQPNN--REDDLRKWLAANDFEIVAED  147 (230)
T ss_dssp             EEEEEC--HHHHHHHHHHTGGGGTTCC--EEE-EEESS--CHHHHHHHHHHTTEEEEEEE
T ss_pred             EEeCCc--hHHHHHHHHHHHHHhCcCC--EEE-EECCC--ChHHHHHHHHHCCCEEEEEE
Confidence            765442  2456778888888888877  444 44433  35678888999999876543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.44  E-value=6.2e-13  Score=123.04  Aligned_cols=110  Identities=20%  Similarity=0.281  Sum_probs=89.4

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF  202 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~  202 (309)
                      .+.+..+....++++|||+|||+|.+++.+++. ++.+|+++|.+ .+++.+++++..|++.   .++++...++.... 
T Consensus        55 ~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~---~~v~~~~~d~~~~~-  128 (349)
T 3q7e_A           55 RNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLD---HVVTIIKGKVEEVE-  128 (349)
T ss_dssp             HHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCT---TTEEEEESCTTTCC-
T ss_pred             HHHHHhccccCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCC---CcEEEEECcHHHcc-
Confidence            344555556678999999999999999998886 67799999999 4999999999999873   45788877776543 


Q ss_pred             CCCCCCccEEEEcCC---CCCcccHHHHHHHHHHHHhcCC
Q 021691          203 PYIVDTFDVIVASDC---TFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~---ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                       .+.++||+|++..+   +++....+.++..+.++|+|||
T Consensus       129 -~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG  167 (349)
T 3q7e_A          129 -LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDG  167 (349)
T ss_dssp             -CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEE
T ss_pred             -CCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCC
Confidence             33578999999654   3445788999999999999999

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.44  E-value=9.1e-13  Score=109.33  Aligned_cols=133  Identities=14%  Similarity=0.062  Sum_probs=92.2

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      .|.+..|.+++...  ..++++|||+|||+|.+++.+++.  + +|+++|+++.|++.      .       .++.+...
T Consensus         7 ~~~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~------~-------~~~~~~~~   68 (170)
T 3q87_B            7 GEDTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES------H-------RGGNLVRA   68 (170)
T ss_dssp             CHHHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT------C-------SSSCEEEC
T ss_pred             CccHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc------c-------cCCeEEEC
Confidence            34556666665431  135779999999999999998876  3 99999999999987      1       23455555


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCccc---------HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEF---------HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL  266 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~---------~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~  266 (309)
                      |+..   +...++||+|+++.+++...+         ...+++.+.+.+ |+|  .+++... .....+.+.+.++++||
T Consensus        69 d~~~---~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG--~l~~~~~-~~~~~~~l~~~l~~~gf  141 (170)
T 3q87_B           69 DLLC---SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVG--MLYLLVI-EANRPKEVLARLEERGY  141 (170)
T ss_dssp             STTT---TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSS--EEEEEEE-GGGCHHHHHHHHHHTTC
T ss_pred             Chhh---hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCC--EEEEEEe-cCCCHHHHHHHHHHCCC
Confidence            5543   223378999999777664322         245667777777 888  4544443 33456788889999999


Q ss_pred             eEEEEec
Q 021691          267 HFSIIEN  273 (309)
Q Consensus       267 ~~~~~~~  273 (309)
                      ....+..
T Consensus       142 ~~~~~~~  148 (170)
T 3q87_B          142 GTRILKV  148 (170)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            8766543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.44  E-value=6.5e-13  Score=118.95  Aligned_cols=102  Identities=18%  Similarity=0.287  Sum_probs=84.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++..++.     ++.+...|......   .++||+|+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~~~---~~~fD~i~  189 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-----NISTALYDINAANI---QENYDFIV  189 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCGGGCCC---CSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-----ceEEEEeccccccc---cCCccEEE
Confidence            6889999999999999998887  55999999999999999999998875     45666665543322   57899999


Q ss_pred             EcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          214 ASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       214 ~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ++.++++.  .....+++.+.++|+|||  .+++..
T Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~  223 (286)
T 3m70_A          190 STVVFMFLNRERVPSIIKNMKEHTNVGG--YNLIVA  223 (286)
T ss_dssp             ECSSGGGSCGGGHHHHHHHHHHTEEEEE--EEEEEE
T ss_pred             EccchhhCCHHHHHHHHHHHHHhcCCCc--EEEEEE
Confidence            99999864  567799999999999999  545444

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.44  E-value=2.7e-13  Score=117.25  Aligned_cols=124  Identities=11%  Similarity=0.054  Sum_probs=89.0

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC-CCCCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD-DFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~-~~~~~~~~fDvI  212 (309)
                      .+.+|||||||+|..++.+|+..+...|+|+|+++.+++.+++++..+++.    ++.+...|.... ......++||.|
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~----nv~~~~~Da~~~l~~~~~~~~~d~v  109 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS----NLRVMCHDAVEVLHKMIPDNSLRMV  109 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS----SEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC----cEEEEECCHHHHHHHHcCCCChheE
Confidence            467999999999999999999888889999999999999999999988873    466655543221 001245789999


Q ss_pred             EEc--CCCCCcccH------HHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691          213 VAS--DCTFFKEFH------KDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN  264 (309)
Q Consensus       213 i~~--d~ly~~~~~------~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~  264 (309)
                      ++.  ++.+.....      +.+++.+.++|+|||  .+++.+ ......+...+.+.+.
T Consensus       110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG--~l~i~t-d~~~~~~~~~~~~~~~  166 (218)
T 3dxy_A          110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGG--VFHMAT-DWEPYAEHMLEVMSSI  166 (218)
T ss_dssp             EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEE--EEEEEE-SCHHHHHHHHHHHHTS
T ss_pred             EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCc--EEEEEe-CCHHHHHHHHHHHHhC
Confidence            997  444333222      359999999999999  444444 3333334455556544

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.44  E-value=2.3e-12  Score=109.66  Aligned_cols=129  Identities=12%  Similarity=0.020  Sum_probs=94.1

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...++++|||+|||+|..++.+++. +..+|+++|+++.+++.+++|+..++.     ++.+...|+...     ..+||
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~-----~~~~D  114 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKG-----KFKVFIGDVSEF-----NSRVD  114 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTT-----SEEEEESCGGGC-----CCCCS
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CEEEEECchHHc-----CCCCC
Confidence            3457889999999999999998876 556899999999999999999988765     356655554432     24899


Q ss_pred             EEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccC
Q 021691          211 VIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       211 vIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                      +|+++.+++..  .....+++.+.+++   |  .+++.......+.+.+.+.+.+.|+.++.+..++
T Consensus       115 ~v~~~~p~~~~~~~~~~~~l~~~~~~l---~--~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  176 (207)
T 1wy7_A          115 IVIMNPPFGSQRKHADRPFLLKAFEIS---D--VVYSIHLAKPEVRRFIEKFSWEHGFVVTHRLTTK  176 (207)
T ss_dssp             EEEECCCCSSSSTTTTHHHHHHHHHHC---S--EEEEEEECCHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             EEEEcCCCccccCCchHHHHHHHHHhc---C--cEEEEEeCCcCCHHHHHHHHHHCCCeEEEEEEEe
Confidence            99997665543  23456677777776   4  3444443345566777788899999887766533

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.44  E-value=7.6e-13  Score=123.66  Aligned_cols=112  Identities=20%  Similarity=0.255  Sum_probs=90.9

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ....+++.......++++|||||||+|.+++.+++. ++.+|+++|.+ .|++.+++++..|++.   .++++...+..+
T Consensus        49 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~---~~v~~~~~d~~~  123 (376)
T 3r0q_C           49 DAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLD---HIVEVIEGSVED  123 (376)
T ss_dssp             HHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCT---TTEEEEESCGGG
T ss_pred             HHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCC---CeEEEEECchhh
Confidence            344566666677789999999999999999998886 56699999999 9999999999999873   457777776654


Q ss_pred             CCCCCCCCCccEEEEcCCCCCc---ccHHHHHHHHHHHHhcCC
Q 021691          200 DDFPYIVDTFDVIVASDCTFFK---EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~lLk~~G  239 (309)
                      ...   .++||+|++..+.|..   .....+++.+.++|+|||
T Consensus       124 ~~~---~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG  163 (376)
T 3r0q_C          124 ISL---PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTG  163 (376)
T ss_dssp             CCC---SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEE
T ss_pred             cCc---CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCe
Confidence            332   2789999996555553   568889999999999999

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.44  E-value=3.6e-12  Score=109.52  Aligned_cols=147  Identities=18%  Similarity=0.224  Sum_probs=91.8

Q ss_pred             ecccH-HHHHHHHhhC--cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceE
Q 021691          115 HWPSE-DVLAFFSLSH--ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVK  191 (309)
Q Consensus       115 ~W~sa-~~La~~l~~~--~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~  191 (309)
                      .|... ..++..+...  ..+.+|.+|||+|||+|..+..+++..+..+|+++|.++.|++.+.++++..      .++.
T Consensus        35 ~~~~~~~~l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~------~~v~  108 (210)
T 1nt2_A           35 EWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------NNII  108 (210)
T ss_dssp             ECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------SSEE
T ss_pred             hcChhHHHHHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC------CCeE
Confidence            56442 2344444332  2345788999999999999999998876679999999999988777665532      1344


Q ss_pred             EEEeeCCCCCC-CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec-----CCchHHHH---HHHHH
Q 021691          192 SMTLHWNQDDF-PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK-----RGDSLDKF---LEEIE  262 (309)
Q Consensus       192 ~~~l~w~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~-----r~~~~~~f---~~~~~  262 (309)
                      ....|...... ....++||+|+++ +. .......+++.+.++|||||  .+++....     +....+.|   .+.++
T Consensus       109 ~~~~d~~~~~~~~~~~~~fD~V~~~-~~-~~~~~~~~l~~~~r~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~l~  184 (210)
T 1nt2_A          109 PLLFDASKPWKYSGIVEKVDLIYQD-IA-QKNQIEILKANAEFFLKEKG--EVVIMVKARSIDSTAEPEEVFKSVLKEME  184 (210)
T ss_dssp             EECSCTTCGGGTTTTCCCEEEEEEC-CC-STTHHHHHHHHHHHHEEEEE--EEEEEEEHHHHCTTSCHHHHHHHHHHHHH
T ss_pred             EEEcCCCCchhhcccccceeEEEEe-cc-ChhHHHHHHHHHHHHhCCCC--EEEEEEecCCccccCCHHHHHHHHHHHHH
Confidence            44333322100 1123789999995 32 33444556899999999999  55554321     22222233   23467


Q ss_pred             hCCCeEEEEe
Q 021691          263 GNHLHFSIIE  272 (309)
Q Consensus       263 ~~G~~~~~~~  272 (309)
                      ++ |.+....
T Consensus       185 ~~-f~~~~~~  193 (210)
T 1nt2_A          185 GD-FKIVKHG  193 (210)
T ss_dssp             TT-SEEEEEE
T ss_pred             hh-cEEeeee
Confidence            77 8775543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.44  E-value=2.2e-12  Score=110.06  Aligned_cols=100  Identities=14%  Similarity=0.120  Sum_probs=79.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||+|..+..+    +..+|+++|.++.+++.++++.  .       ++.+...+...  .+...++||+|+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~--~-------~~~~~~~d~~~--~~~~~~~fD~v~  100 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA--P-------EATWVRAWGEA--LPFPGESFDVVL  100 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC--T-------TSEEECCCTTS--CCSCSSCEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC--C-------CcEEEEccccc--CCCCCCcEEEEE
Confidence            7889999999999988765    3449999999999999999875  1       23444444432  233457899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      +..++++..+...+++.+.++|+|||  .+++..+.+
T Consensus       101 ~~~~l~~~~~~~~~l~~~~~~L~pgG--~l~i~~~~~  135 (211)
T 2gs9_A          101 LFTTLEFVEDVERVLLEARRVLRPGG--ALVVGVLEA  135 (211)
T ss_dssp             EESCTTTCSCHHHHHHHHHHHEEEEE--EEEEEEECT
T ss_pred             EcChhhhcCCHHHHHHHHHHHcCCCC--EEEEEecCC
Confidence            99999999999999999999999999  666665544

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.44  E-value=1.4e-13  Score=123.47  Aligned_cols=122  Identities=13%  Similarity=0.139  Sum_probs=88.0

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +.+++.......++++|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++...+......++.+...++....
T Consensus        45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           45 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            3344444333446789999999999999998886  45999999999999999998765443211123445555443211


Q ss_pred             C-CCCCCCccEEEEc-CCCCCccc-------HHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          202 F-PYIVDTFDVIVAS-DCTFFKEF-------HKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       202 ~-~~~~~~fDvIi~~-d~ly~~~~-------~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      . ....++||+|++. +++++..+       ...+++.+.++|+|||  .+++..
T Consensus       123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~  175 (293)
T 3thr_A          123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG--LLVIDH  175 (293)
T ss_dssp             HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEE--EEEEEE
T ss_pred             cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCe--EEEEEe
Confidence            0 0245789999998 88888777       9999999999999999  555544

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.43  E-value=2.4e-13  Score=116.00  Aligned_cols=106  Identities=9%  Similarity=0.075  Sum_probs=81.1

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++++|||+|||+|.+++.+++. +..+|+++|.++.+++.+++|+..++.    .++.+...|+... .+...++||+|+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~-~~~~V~~vD~s~~~l~~a~~~~~~~~~----~~v~~~~~D~~~~-~~~~~~~fD~V~  127 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKA----GNARVVNSNAMSF-LAQKGTPHNIVF  127 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTC----CSEEEECSCHHHH-HSSCCCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHHH-HhhcCCCCCEEE
Confidence            6889999999999999987665 456999999999999999999999876    3566665544321 122346899999


Q ss_pred             EcCCCCCcccHHHHHHHHHH--HHhcCCCeEEEEEee
Q 021691          214 ASDCTFFKEFHKDLARIIKF--LLKKVGPSEALFFSP  248 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~--lLk~~G~~~~ii~~~  248 (309)
                      +..+ |+......+++.+.+  +|+|+|  .+++...
T Consensus       128 ~~~p-~~~~~~~~~l~~l~~~~~L~pgG--~l~i~~~  161 (202)
T 2fpo_A          128 VDPP-FRRGLLEETINLLEDNGWLADEA--LIYVESE  161 (202)
T ss_dssp             ECCS-SSTTTHHHHHHHHHHTTCEEEEE--EEEEEEE
T ss_pred             ECCC-CCCCcHHHHHHHHHhcCccCCCc--EEEEEEC
Confidence            9555 667778888888876  499999  5555443

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.43  E-value=9.7e-13  Score=114.41  Aligned_cols=134  Identities=10%  Similarity=0.063  Sum_probs=93.0

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCCCC
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYIVD  207 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~~~  207 (309)
                      ..+.++.+|||+|||+|..+..+++.. +..+|+++|.++.+++.+.+++..+      .++.+...|..... .+...+
T Consensus        73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~------~~v~~~~~d~~~~~~~~~~~~  146 (233)
T 2ipx_A           73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR------TNIIPVIEDARHPHKYRMLIA  146 (233)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC------TTEEEECSCTTCGGGGGGGCC
T ss_pred             ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc------CCeEEEEcccCChhhhcccCC
Confidence            345678999999999999999999886 4579999999999999888888775      24555555544321 122356


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----Cch---HHHHHHHHHhCCCeEEEEec
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----GDS---LDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----~~~---~~~f~~~~~~~G~~~~~~~~  273 (309)
                      +||+|++..+  .......++..+.++|+|+|  .+++....+     ...   +..-.+.++++||.+.....
T Consensus       147 ~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  216 (233)
T 2ipx_A          147 MVDVIFADVA--QPDQTRIVALNAHTFLRNGG--HFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLT  216 (233)
T ss_dssp             CEEEEEECCC--CTTHHHHHHHHHHHHEEEEE--EEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEE
T ss_pred             cEEEEEEcCC--CccHHHHHHHHHHHHcCCCe--EEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEe
Confidence            8999999433  34444667888999999999  555533221     111   11225677888998766443

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.43  E-value=1.9e-12  Score=118.64  Aligned_cols=127  Identities=12%  Similarity=0.074  Sum_probs=100.3

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      ++|||+|||+|..+..+++..+..+++++|. +.+++.+++++..+++.   .++++...|....   . ..+||+|++.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~---~-~~~~D~v~~~  240 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG---ERVSLVGGDMLQE---V-PSNGDIYLLS  240 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT---TSEEEEESCTTTC---C-CSSCSEEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC---CcEEEecCCCCCC---C-CCCCCEEEEc
Confidence            8999999999999999999888889999999 99999999998877652   4677777776542   2 2579999999


Q ss_pred             CCCCCcccH--HHHHHHHHHHHhcCCCeEEEEEeec-----------------------CCchHHHHHHHHHhCCCeEEE
Q 021691          216 DCTFFKEFH--KDLARIIKFLLKKVGPSEALFFSPK-----------------------RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       216 d~ly~~~~~--~~ll~~l~~lLk~~G~~~~ii~~~~-----------------------r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      .++|+..+.  ..+++.++++|+|||  .+++....                       +..+.+++.+.++++||....
T Consensus       241 ~vl~~~~~~~~~~~l~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  318 (334)
T 2ip2_A          241 RIIGDLDEAASLRLLGNCREAMAGDG--RVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVER  318 (334)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHSCTTC--EEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred             hhccCCCHHHHHHHHHHHHHhcCCCC--EEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeE
Confidence            999865444  489999999999999  66665422                       122456777888888888765


Q ss_pred             Ee
Q 021691          271 IE  272 (309)
Q Consensus       271 ~~  272 (309)
                      +.
T Consensus       319 ~~  320 (334)
T 2ip2_A          319 IV  320 (334)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.42  E-value=1.2e-13  Score=120.44  Aligned_cols=127  Identities=16%  Similarity=0.120  Sum_probs=88.8

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++.+|||+|||+|..+..+++. +..+|+++|.++.|++.++++...++.     ++.+...++.+...+..+++||+|+
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~fD~V~  133 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTH-----KVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSS-----EEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcCC-----CeEEEecCHHHhhcccCCCceEEEE
Confidence            5789999999999999988653 455999999999999999998776542     4666666554331134457899999


Q ss_pred             E-cCCC----CCcccHHHHHHHHHHHHhcCCCeEEEEEeecC---------Cc----hHHHHHHHHHhCCCeE
Q 021691          214 A-SDCT----FFKEFHKDLARIIKFLLKKVGPSEALFFSPKR---------GD----SLDKFLEEIEGNHLHF  268 (309)
Q Consensus       214 ~-~d~l----y~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---------~~----~~~~f~~~~~~~G~~~  268 (309)
                      + ...+    .+......+++.++++|||||  .++++....         ..    ..+.....+.++||..
T Consensus       134 ~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGG--VLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEE--EEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             ECCcccchhhhhhhhHHHHHHHHHHhcCCCe--EEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence            9 3332    123345578999999999999  555443211         00    1133456788899974

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.42  E-value=9e-13  Score=117.79  Aligned_cols=125  Identities=14%  Similarity=0.104  Sum_probs=92.9

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      +.++++|||+|||+|.+++.+|+..++.+|+++|.++.+++.+++|++.|++.    ++.+...|....  +. ..+||+
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~----~~~~~~~d~~~~--~~-~~~~D~  189 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN----NVIPILADNRDV--EL-KDVADR  189 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS----SEEEEESCGGGC--CC-TTCEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CEEEEECChHHc--Cc-cCCceE
Confidence            45788999999999999999999876779999999999999999999999873    455665555433  22 568999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----CchHHHHHHHHHh-CCCeEE
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----GDSLDKFLEEIEG-NHLHFS  269 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----~~~~~~f~~~~~~-~G~~~~  269 (309)
                      |++..+.    ....++..+.++|+|+|  .+++.+...    ..+..+..+.+.+ .|..++
T Consensus       190 Vi~d~p~----~~~~~l~~~~~~LkpgG--~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (272)
T 3a27_A          190 VIMGYVH----KTHKFLDKTFEFLKDRG--VIHYHETVAEKIMYERPIERLKFYAEKNGYKLI  246 (272)
T ss_dssp             EEECCCS----SGGGGHHHHHHHEEEEE--EEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred             EEECCcc----cHHHHHHHHHHHcCCCC--EEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence            9996543    45678889999999999  454444322    2455555666555 355544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.42  E-value=1.4e-12  Score=113.12  Aligned_cols=103  Identities=9%  Similarity=-0.012  Sum_probs=78.0

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+.+++....  .++++|||+|||+|..+..+++..  .+|+++|.++.+++.++++.         .++.+...+....
T Consensus        29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~   95 (239)
T 3bxo_A           29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL---------PDATLHQGDMRDF   95 (239)
T ss_dssp             HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC---------TTCEEEECCTTTC
T ss_pred             HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC---------CCCEEEECCHHHc
Confidence            3455554432  467899999999999999988873  39999999999999998863         1345555555432


Q ss_pred             CCCCCCCCccEEEE-cCCCCCc---ccHHHHHHHHHHHHhcCC
Q 021691          201 DFPYIVDTFDVIVA-SDCTFFK---EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       201 ~~~~~~~~fDvIi~-~d~ly~~---~~~~~ll~~l~~lLk~~G  239 (309)
                      .  . .++||+|++ .+++++.   .+...+++.+.++|+|||
T Consensus        96 ~--~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG  135 (239)
T 3bxo_A           96 R--L-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGG  135 (239)
T ss_dssp             C--C-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEE
T ss_pred             c--c-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCe
Confidence            2  2 568999995 4476665   667889999999999999

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.42  E-value=3.2e-12  Score=114.33  Aligned_cols=135  Identities=13%  Similarity=0.190  Sum_probs=97.5

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|++|||+|||+|.+++.+|+. ++.+|+++|.||.+++.+++|++.|++.   .++.+...|....   ...+.||.|
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~---~~v~~~~~D~~~~---~~~~~~D~V  196 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVE---DRMSAYNMDNRDF---PGENIADRI  196 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCTTTC---CCCSCEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEeCcHHHh---ccccCCCEE
Confidence            46899999999999999998876 5679999999999999999999999984   4677666553321   124689999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe--ec---CCchHHHHHHHHHhCCCeEEEE-----eccCchhhh
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS--PK---RGDSLDKFLEEIEGNHLHFSII-----ENYNAEIWK  280 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~--~~---r~~~~~~f~~~~~~~G~~~~~~-----~~~~~~~~~  280 (309)
                      ++..+.+..    .++..+.++|++||  .+.+..  ..   .....+.+.+.+++.|+.++.+     ..|.+..|+
T Consensus       197 i~~~p~~~~----~~l~~a~~~lk~gG--~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP~~~h  268 (278)
T 3k6r_A          197 LMGYVVRTH----EFIPKALSIAKDGA--IIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVWH  268 (278)
T ss_dssp             EECCCSSGG----GGHHHHHHHEEEEE--EEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEEE
T ss_pred             EECCCCcHH----HHHHHHHHHcCCCC--EEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEEEEEEEeECcCccE
Confidence            997665443    34566678999998  333322  11   1334566777888899887543     345555553

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.42  E-value=2.5e-12  Score=118.62  Aligned_cols=134  Identities=16%  Similarity=0.170  Sum_probs=105.4

Q ss_pred             cCcCC-CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691          130 ADMFR-SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       130 ~~~~~-g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~  208 (309)
                      ....+ +++|||+|||+|..+..+++.++..+++++|. +.+++.+++++...+..   .++++...|...... .....
T Consensus       174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~-~~~~~  248 (352)
T 3mcz_A          174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG---GRVEFFEKNLLDARN-FEGGA  248 (352)
T ss_dssp             CGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG---GGEEEEECCTTCGGG-GTTCC
T ss_pred             CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC---CceEEEeCCcccCcc-cCCCC
Confidence            34445 78999999999999999999988889999999 89999999999887762   467888777654321 13456


Q ss_pred             ccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeec-------------------------CCchHHHHHHHH
Q 021691          209 FDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPK-------------------------RGDSLDKFLEEI  261 (309)
Q Consensus       209 fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~-------------------------r~~~~~~f~~~~  261 (309)
                      ||+|++..++|+..+  ...+++.++++|+|||  .+++....                         +..+.+++.+.+
T Consensus       249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  326 (352)
T 3mcz_A          249 ADVVMLNDCLHYFDAREAREVIGHAAGLVKPGG--ALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVV  326 (352)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEE--EEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHH
T ss_pred             ccEEEEecccccCCHHHHHHHHHHHHHHcCCCC--EEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHH
Confidence            999999999987654  4889999999999999  56665421                         123456788889


Q ss_pred             HhCCCeEEE
Q 021691          262 EGNHLHFSI  270 (309)
Q Consensus       262 ~~~G~~~~~  270 (309)
                      +++||.+..
T Consensus       327 ~~aGf~~~~  335 (352)
T 3mcz_A          327 RDAGLAVGE  335 (352)
T ss_dssp             HHTTCEEEE
T ss_pred             HHCCCceee
Confidence            999998765

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.42  E-value=2.2e-13  Score=117.14  Aligned_cols=142  Identities=11%  Similarity=-0.010  Sum_probs=95.3

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+++..++.+|+++|+++.|++.+.+++..+....+..++.+...|....  +...+. |.|
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l--~~~~~~-d~v  102 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL--PPLSGV-GEL  102 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC--CSCCCE-EEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC--CCCCCC-CEE
Confidence            46789999999999999999998878899999999999987655544322111123677777766543  233344 777


Q ss_pred             EEcCCCC-----CcccHHHHHHHHHHHHhcCCCeEEEEEeec----------C------C-chHHHHHHHHHhCCCeEEE
Q 021691          213 VASDCTF-----FKEFHKDLARIIKFLLKKVGPSEALFFSPK----------R------G-DSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       213 i~~d~ly-----~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~----------r------~-~~~~~f~~~~~~~G~~~~~  270 (309)
                      ...-+..     +..+...+++.+.++|+|||  .+++....          +      . ...+.+.+.+.++||.+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~  180 (218)
T 3mq2_A          103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGA--SFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD  180 (218)
T ss_dssp             EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEE--EEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             EEEccchhhhhhhhccHHHHHHHHHHHcCCCc--EEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence            6322110     22334789999999999999  45443211          0      0 1123477789999999988


Q ss_pred             EeccCchhh
Q 021691          271 IENYNAEIW  279 (309)
Q Consensus       271 ~~~~~~~~~  279 (309)
                      ++..+...+
T Consensus       181 ~~~~~~~~~  189 (218)
T 3mq2_A          181 CRYLEPEEV  189 (218)
T ss_dssp             EEEECHHHH
T ss_pred             eeccchhhh
Confidence            877665433

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.42  E-value=5.4e-13  Score=123.11  Aligned_cols=125  Identities=17%  Similarity=0.157  Sum_probs=90.7

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .|+.-...++++........+.+|||+|||+|.+++.+++..+..+|+++|.++.+++.+++|+..++..     +.+..
T Consensus       177 ~~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-----~~~~~  251 (343)
T 2pjd_A          177 SRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-----GEVFA  251 (343)
T ss_dssp             TSSSCCHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-----CEEEE
T ss_pred             CCCCCcHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CEEEE
Confidence            4443223333333333233567999999999999999998876679999999999999999999998763     23333


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCC-----cccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFF-----KEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~-----~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      .|...    ...++||+|+++.++++     ......+++.+.++|+|||  .+++.....
T Consensus       252 ~d~~~----~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~~  306 (343)
T 2pjd_A          252 SNVFS----EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGG--ELRIVANAF  306 (343)
T ss_dssp             CSTTT----TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEE--EEEEEEETT
T ss_pred             ccccc----cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCc--EEEEEEcCC
Confidence            33321    23568999999888774     3456889999999999999  566655443

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.42  E-value=1.2e-12  Score=115.16  Aligned_cols=132  Identities=14%  Similarity=0.091  Sum_probs=95.8

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCCCc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~~f  209 (309)
                      ..++++|||+|||+|..++.+|+.++ +.+|+++|.++.+++.+++++..+++.   .++.+...+..+.... ...++|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~l~~~~~~~~f  137 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD---QRVTLREGPALQSLESLGECPAF  137 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT---TTEEEEESCHHHHHHTCCSCCCC
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHHHHHhcCCCCCe
Confidence            34678999999999999999998876 689999999999999999999998873   4577766654321111 113489


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCC-------------chHHHHHHHHHhC-CCeEEEE
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRG-------------DSLDKFLEEIEGN-HLHFSII  271 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~-------------~~~~~f~~~~~~~-G~~~~~~  271 (309)
                      |+|++. .  .......+++.+.++|+|||  .+++......             ....+|.+.+.+. .+....+
T Consensus       138 D~V~~d-~--~~~~~~~~l~~~~~~LkpGG--~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  208 (248)
T 3tfw_A          138 DLIFID-A--DKPNNPHYLRWALRYSRPGT--LIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL  208 (248)
T ss_dssp             SEEEEC-S--CGGGHHHHHHHHHHTCCTTC--EEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEEEEC-C--chHHHHHHHHHHHHhcCCCe--EEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence            999984 3  35667889999999999999  4554433211             1345677776654 4555444

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.41  E-value=6.9e-13  Score=114.91  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=91.0

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC-CCCccE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI-VDTFDV  211 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~-~~~fDv  211 (309)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++     .    .++.+...|+... .+.. .++||+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~----~~~~~~~~d~~~~-~~~~~~~~fD~  114 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----A----PHADVYEWNGKGE-LPAGLGAPFGL  114 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----C----TTSEEEECCSCSS-CCTTCCCCEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----C----CCceEEEcchhhc-cCCcCCCCEEE
Confidence            46789999999999999998887  56999999999999999987     1    2466777776422 2333 578999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      |+++      .+...+++.+.++|+|||  .++  ......+...+.+.+.++||....+.
T Consensus       115 v~~~------~~~~~~l~~~~~~LkpgG--~l~--~~~~~~~~~~~~~~l~~~Gf~~~~~~  165 (226)
T 3m33_A          115 IVSR------RGPTSVILRLPELAAPDA--HFL--YVGPRLNVPEVPERLAAVGWDIVAED  165 (226)
T ss_dssp             EEEE------SCCSGGGGGHHHHEEEEE--EEE--EEESSSCCTHHHHHHHHTTCEEEEEE
T ss_pred             EEeC------CCHHHHHHHHHHHcCCCc--EEE--EeCCcCCHHHHHHHHHHCCCeEEEEE
Confidence            9996      355678899999999999  444  33333455678889999999876543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.41  E-value=1e-12  Score=120.73  Aligned_cols=130  Identities=18%  Similarity=0.135  Sum_probs=90.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC--CCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY--IVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~--~~~~fDv  211 (309)
                      ++++|||+|||+|.+++.+|+. ++ +|+++|.++.+++.+++|+..|++..  .++.+...|........  ...+||+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~-ga-~V~~VD~s~~al~~a~~n~~~~gl~~--~~v~~i~~D~~~~l~~~~~~~~~fD~  228 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA-GA-EVTHVDASKKAIGWAKENQVLAGLEQ--APIRWICEDAMKFIQREERRGSTYDI  228 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHHHHHTCTT--SCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             CCCcEEEcccccCHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHHcCCCc--cceEEEECcHHHHHHHHHhcCCCceE
Confidence            5789999999999999998875 44 99999999999999999999998731  13555554432211000  1358999


Q ss_pred             EEEcCCCCCc----------ccHHHHHHHHHHHHhcCCCeEEEEEeec-CCchHHHHHHHHH----hCCCeEE
Q 021691          212 IVASDCTFFK----------EFHKDLARIIKFLLKKVGPSEALFFSPK-RGDSLDKFLEEIE----GNHLHFS  269 (309)
Q Consensus       212 Ii~~d~ly~~----------~~~~~ll~~l~~lLk~~G~~~~ii~~~~-r~~~~~~f~~~~~----~~G~~~~  269 (309)
                      |++..+.|..          .....+++.+.++|+|+|  .+++.... .......|.+.++    +.|+.++
T Consensus       229 Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG--~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          229 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKA--LGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTC--CEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             EEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCc--EEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            9995543332          246788999999999999  44443333 2334455555544    6788775

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.41  E-value=6.3e-12  Score=117.27  Aligned_cols=130  Identities=15%  Similarity=0.192  Sum_probs=95.6

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCCCcc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~~fD  210 (309)
                      ..+|++|||+| |+|.+++.+++..+..+|+++|+++.+++.+++|+..+++.    ++.+...|+... .+ ...++||
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~----~v~~~~~D~~~~-l~~~~~~~fD  243 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE----DIEIFTFDLRKP-LPDYALHKFD  243 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC----CEEEECCCTTSC-CCTTTSSCBS
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CEEEEEChhhhh-chhhccCCcc
Confidence            34689999999 99999999888754479999999999999999999999862    577777766542 22 1245899


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-CchH---HHHHHHHH-hCCCeEEE
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-GDSL---DKFLEEIE-GNHLHFSI  270 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-~~~~---~~f~~~~~-~~G~~~~~  270 (309)
                      +|+++.+ |.......+++.+.++|+|||  .++++.... ..+.   ..+.+.+. +.|+.+..
T Consensus       244 ~Vi~~~p-~~~~~~~~~l~~~~~~LkpgG--~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  305 (373)
T 2qm3_A          244 TFITDPP-ETLEAIRAFVGRGIATLKGPR--CAGYFGITRRESSLDKWREIQKLLLNEFNVVITD  305 (373)
T ss_dssp             EEEECCC-SSHHHHHHHHHHHHHTBCSTT--CEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred             EEEECCC-CchHHHHHHHHHHHHHcccCC--eEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhh
Confidence            9999554 544446888999999999999  343333332 3344   44556666 78887644

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.41  E-value=3.6e-12  Score=117.92  Aligned_cols=132  Identities=14%  Similarity=0.084  Sum_probs=103.2

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..+++..+..+++++|. +.+++.+++++..+++.   .++++...|+.+.   . ...||+
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~---~-~~~~D~  252 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS---DRVDVVEGDFFEP---L-PRKADA  252 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT---TTEEEEECCTTSC---C-SSCEEE
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC---CceEEEeCCCCCC---C-CCCccE
Confidence            34678999999999999999999887789999999 99999999999888762   4678887776531   1 234999


Q ss_pred             EEEcCCCCCcccH--HHHHHHHHHHHhcCCCeEEEEEeec-C-----------------------CchHHHHHHHHHhCC
Q 021691          212 IVASDCTFFKEFH--KDLARIIKFLLKKVGPSEALFFSPK-R-----------------------GDSLDKFLEEIEGNH  265 (309)
Q Consensus       212 Ii~~d~ly~~~~~--~~ll~~l~~lLk~~G~~~~ii~~~~-r-----------------------~~~~~~f~~~~~~~G  265 (309)
                      |++..++|+..+.  ..+++.+.++|+|||  .+++.... .                       ..+.+++.+.++++|
T Consensus       253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG  330 (360)
T 1tw3_A          253 IILSFVLLNWPDHDAVRILTRCAEALEPGG--RILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAG  330 (360)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEE--EEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTT
T ss_pred             EEEcccccCCCHHHHHHHHHHHHHhcCCCc--EEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCC
Confidence            9999999876554  589999999999999  66665433 1                       124566778888899


Q ss_pred             CeEEEEec
Q 021691          266 LHFSIIEN  273 (309)
Q Consensus       266 ~~~~~~~~  273 (309)
                      |.+..+..
T Consensus       331 f~~~~~~~  338 (360)
T 1tw3_A          331 LVVEEVRQ  338 (360)
T ss_dssp             EEEEEEEE
T ss_pred             CeEEEEEe
Confidence            98766543

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.41  E-value=4.8e-12  Score=120.39  Aligned_cols=152  Identities=20%  Similarity=0.188  Sum_probs=109.2

Q ss_pred             cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      .+..|.+.+.......++.+|||+|||+|.+++.+|+.  +.+|+++|+++.+++.+++|+..|++.    ++.+...|+
T Consensus       270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~----~v~f~~~d~  343 (433)
T 1uwv_A          270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQ----NVTFYHENL  343 (433)
T ss_dssp             HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEECCT
T ss_pred             HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEECCH
Confidence            35566666666555567889999999999999998886  679999999999999999999999873    677877777


Q ss_pred             CCCCC--CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccC
Q 021691          198 NQDDF--PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       198 ~~~~~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                      .+...  +...++||+|++ |+.|...  ..+++.+.. +++++   +++.+ ..+.++.+-...+.+.|+.+..+..++
T Consensus       344 ~~~l~~~~~~~~~fD~Vv~-dPPr~g~--~~~~~~l~~-~~p~~---ivyvs-c~p~tlard~~~l~~~Gy~~~~~~~~d  415 (433)
T 1uwv_A          344 EEDVTKQPWAKNGFDKVLL-DPARAGA--AGVMQQIIK-LEPIR---IVYVS-CNPATLARDSEALLKAGYTIARLAMLD  415 (433)
T ss_dssp             TSCCSSSGGGTTCCSEEEE-CCCTTCC--HHHHHHHHH-HCCSE---EEEEE-SCHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             HHHhhhhhhhcCCCCEEEE-CCCCccH--HHHHHHHHh-cCCCe---EEEEE-CChHHHHhhHHHHHHCCcEEEEEEEec
Confidence            65321  123458999999 5656533  245555543 44544   44433 355677777778888999998877776


Q ss_pred             chhhhhhh
Q 021691          276 AEIWKRHQ  283 (309)
Q Consensus       276 ~~~~~~~~  283 (309)
                      .-.+..|-
T Consensus       416 ~Fp~t~Hv  423 (433)
T 1uwv_A          416 MFPHTGHL  423 (433)
T ss_dssp             CSTTSSCC
T ss_pred             cCCCCCeE
Confidence            65555443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.40  E-value=1.3e-12  Score=114.35  Aligned_cols=126  Identities=13%  Similarity=0.044  Sum_probs=94.3

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|.+|||+|||+|.+++.+|+..++.+|+++|+++.+++.+++|++.|++.   .++.+...|+-+...  ...+||+|
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~---~~I~v~~gD~l~~~~--~~~~~D~I   94 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT---EQIDVRKGNGLAVIE--KKDAIDTI   94 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT---TTEEEEECSGGGGCC--GGGCCCEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---ceEEEEecchhhccC--ccccccEE
Confidence            3578999999999999999999766779999999999999999999999983   457777666543221  12369998


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      +.+..-  ...+..++......|++++  .+++ ++..  ......+.+.+.||.+..
T Consensus        95 viagmG--g~lI~~IL~~~~~~L~~~~--~lIl-q~~~--~~~~lr~~L~~~Gf~i~~  145 (244)
T 3gnl_A           95 VIAGMG--GTLIRTILEEGAAKLAGVT--KLIL-QPNI--AAWQLREWSEQNNWLITS  145 (244)
T ss_dssp             EEEEEC--HHHHHHHHHHTGGGGTTCC--EEEE-EESS--CHHHHHHHHHHHTEEEEE
T ss_pred             EEeCCc--hHHHHHHHHHHHHHhCCCC--EEEE-EcCC--ChHHHHHHHHHCCCEEEE
Confidence            865432  2456778888888888776  4444 4433  346677788888998743

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.40  E-value=8.7e-12  Score=108.70  Aligned_cols=148  Identities=16%  Similarity=0.139  Sum_probs=96.2

Q ss_pred             ecccHH-HHHHHHhhCc---CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCc
Q 021691          115 HWPSED-VLAFFSLSHA---DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTT  189 (309)
Q Consensus       115 ~W~sa~-~La~~l~~~~---~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~  189 (309)
                      .|..-. .++..+....   .+.+|.+|||+|||+|..+..+|...+ .++|+++|.++.|++.+.+.....      .+
T Consensus        53 ~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r------~n  126 (232)
T 3id6_C           53 EWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR------PN  126 (232)
T ss_dssp             ECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC------TT
T ss_pred             hhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CC
Confidence            665433 3666665543   367899999999999999999888754 569999999999987665544432      24


Q ss_pred             eEEEEeeCCCCCC-CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec--------CCchHHHHHHH
Q 021691          190 VKSMTLHWNQDDF-PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK--------RGDSLDKFLEE  260 (309)
Q Consensus       190 v~~~~l~w~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~--------r~~~~~~f~~~  260 (309)
                      +.+...|...... ....++||+|++. +.. +.....+...++++|+|||  .+++....        ..+.++.-.+.
T Consensus       127 v~~i~~Da~~~~~~~~~~~~~D~I~~d-~a~-~~~~~il~~~~~~~LkpGG--~lvisik~~~~d~t~~~~e~~~~~~~~  202 (232)
T 3id6_C          127 IFPLLADARFPQSYKSVVENVDVLYVD-IAQ-PDQTDIAIYNAKFFLKVNG--DMLLVIKARSIDVTKDPKEIYKTEVEK  202 (232)
T ss_dssp             EEEEECCTTCGGGTTTTCCCEEEEEEC-CCC-TTHHHHHHHHHHHHEEEEE--EEEEEEC-------CCSSSSTTHHHHH
T ss_pred             eEEEEcccccchhhhccccceEEEEec-CCC-hhHHHHHHHHHHHhCCCCe--EEEEEEccCCcccCCCHHHHHHHHHHH
Confidence            5665555433211 1234689999985 333 3344455667777999999  45544211        12233455667


Q ss_pred             HHhCCCeEEEEe
Q 021691          261 IEGNHLHFSIIE  272 (309)
Q Consensus       261 ~~~~G~~~~~~~  272 (309)
                      ++++||++....
T Consensus       203 L~~~gf~~~~~~  214 (232)
T 3id6_C          203 LENSNFETIQII  214 (232)
T ss_dssp             HHHTTEEEEEEE
T ss_pred             HHHCCCEEEEEe
Confidence            778898875443

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=2.1e-12  Score=112.85  Aligned_cols=106  Identities=11%  Similarity=0.039  Sum_probs=82.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC---CCCC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY---IVDT  208 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~---~~~~  208 (309)
                      ..++.+|||+|||+|..+..+++..+  +|+++|.++.+++.++++..       ..++.+...|........   ....
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~  124 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT-------AANISYRLLDGLVPEQAAQIHSEIG  124 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC-------CTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc-------ccCceEEECcccccccccccccccC
Confidence            45788999999999999999988743  89999999999999998762       125666666554321110   0124


Q ss_pred             ccEEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          209 FDVIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       209 fDvIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ||+|++..++++..  +...+++.+.++|+|||  .+++...
T Consensus       125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~~  164 (245)
T 3ggd_A          125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQG--AMYLIEL  164 (245)
T ss_dssp             SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTC--EEEEEEE
T ss_pred             ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCC--EEEEEeC
Confidence            89999999999977  88999999999999999  5666554

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.39  E-value=2.2e-12  Score=110.06  Aligned_cols=109  Identities=15%  Similarity=0.047  Sum_probs=84.5

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      ..+.......++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++..++..    ++.+...|+....  
T Consensus        67 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~----~v~~~~~d~~~~~--  138 (210)
T 3lbf_A           67 ARMTELLELTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLH----NVSTRHGDGWQGW--  138 (210)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEESCGGGCC--
T ss_pred             HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCC----ceEEEECCcccCC--
Confidence            34444445668899999999999999999887  679999999999999999999988762    5677766654422  


Q ss_pred             CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ...++||+|++..++++...      .+.++|+|||  .+++..+
T Consensus       139 ~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG--~lv~~~~  175 (210)
T 3lbf_A          139 QARAPFDAIIVTAAPPEIPT------ALMTQLDEGG--ILVLPVG  175 (210)
T ss_dssp             GGGCCEEEEEESSBCSSCCT------HHHHTEEEEE--EEEEEEC
T ss_pred             ccCCCccEEEEccchhhhhH------HHHHhcccCc--EEEEEEc
Confidence            12468999999887776543      5789999999  5555443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.39  E-value=6.2e-13  Score=114.66  Aligned_cols=132  Identities=14%  Similarity=0.100  Sum_probs=94.2

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC---CCCC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP---YIVD  207 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~---~~~~  207 (309)
                      ..++++|||+|||+|..++.+|+.++ +.+|+++|.++.+++.+++++..++..   .++.+...+..+....   ...+
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~  132 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN---DRVEVRTGLALDSLQQIENEKYE  132 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCHHHHHHHHHHTTCC
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHHHHHHHHhcCCC
Confidence            34688999999999999999998876 679999999999999999999988873   3567666554321000   1125


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCC-------------chHHHHHHHHHhC-CCeEEEE
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRG-------------DSLDKFLEEIEGN-HLHFSII  271 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~-------------~~~~~f~~~~~~~-G~~~~~~  271 (309)
                      +||+|++...   ......+++.+.++|+|||  .+++......             ..+..|.+.+.+. .+....+
T Consensus       133 ~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG--~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  205 (223)
T 3duw_A          133 PFDFIFIDAD---KQNNPAYFEWALKLSRPGT--VIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATAL  205 (223)
T ss_dssp             CCSEEEECSC---GGGHHHHHHHHHHTCCTTC--EEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcCEEEEcCC---cHHHHHHHHHHHHhcCCCc--EEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEE
Confidence            7999998433   5567889999999999999  4444333221             2345677777654 3444433

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.39  E-value=2.6e-13  Score=111.59  Aligned_cols=106  Identities=20%  Similarity=0.161  Sum_probs=78.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCCCCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPYIVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~~~~~fDv  211 (309)
                      ++++|||+|||+|..++.+++.  +.+|+++|.++.+++.+++|+..++.     ++.+...|+.+..  ......+||+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGL-----GARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTC-----CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHcCC-----ceEEEeccHHHHHHhhhccCCceEE
Confidence            6889999999999999998886  34599999999999999999998865     3455444433210  0011247999


Q ss_pred             EEEcCCCCCcccHHHHHHHHH--HHHhcCCCeEEEEEeecC
Q 021691          212 IVASDCTFFKEFHKDLARIIK--FLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~--~lLk~~G~~~~ii~~~~r  250 (309)
                      |+++.+++  ...+.+++.+.  ++|+|+|  .+++.....
T Consensus       114 i~~~~~~~--~~~~~~~~~~~~~~~L~~gG--~~~~~~~~~  150 (171)
T 1ws6_A          114 AFMAPPYA--MDLAALFGELLASGLVEAGG--LYVLQHPKD  150 (171)
T ss_dssp             EEECCCTT--SCTTHHHHHHHHHTCEEEEE--EEEEEEETT
T ss_pred             EEECCCCc--hhHHHHHHHHHhhcccCCCc--EEEEEeCCc
Confidence            99966644  56677888887  9999999  555555443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.38  E-value=4.4e-12  Score=113.99  Aligned_cols=105  Identities=14%  Similarity=0.199  Sum_probs=81.1

Q ss_pred             CcCcCCCCeEEEeCCCCChh-hHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691          129 HADMFRSKRVIELGSGYGLA-GLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD  207 (309)
Q Consensus       129 ~~~~~~g~~VLELG~GtG~~-~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~  207 (309)
                      ...+.+|++|||+|||+|.. ++.+|+ ..+.+|+++|+++++++.++++++..++    .++++...|..+  .  .++
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~-~~ga~V~gIDis~~~l~~Ar~~~~~~gl----~~v~~v~gDa~~--l--~d~  187 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSH-VYGMRVNVVEIEPDIAELSRKVIEGLGV----DGVNVITGDETV--I--DGL  187 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHH-TTCCEEEEEESSHHHHHHHHHHHHHHTC----CSEEEEESCGGG--G--GGC
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHH-ccCCEEEEEECCHHHHHHHHHHHHhcCC----CCeEEEECchhh--C--CCC
Confidence            34567899999999999755 455555 4567999999999999999999998776    356666654432  2  257


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +||+|+++..   ..+...+++.+.++|+|||  .+++..
T Consensus       188 ~FDvV~~~a~---~~d~~~~l~el~r~LkPGG--~Lvv~~  222 (298)
T 3fpf_A          188 EFDVLMVAAL---AEPKRRVFRNIHRYVDTET--RIIYRT  222 (298)
T ss_dssp             CCSEEEECTT---CSCHHHHHHHHHHHCCTTC--EEEEEE
T ss_pred             CcCEEEECCC---ccCHHHHHHHHHHHcCCCc--EEEEEc
Confidence            8999998644   4678899999999999999  555443

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.38  E-value=3.5e-12  Score=109.75  Aligned_cols=119  Identities=13%  Similarity=0.135  Sum_probs=91.6

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++++|||+|||+|..+..+++.      +++|.++.+++.++++    +       +.+...+...  .+...++||+|+
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----~-------~~~~~~d~~~--~~~~~~~fD~v~  107 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----G-------VFVLKGTAEN--LPLKDESFDFAL  107 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----T-------CEEEECBTTB--CCSCTTCEEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----C-------CEEEEccccc--CCCCCCCeeEEE
Confidence            3789999999999998876442      9999999999999876    1       3444444432  233456899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------CchHHHHHHHHHhCCCeEEEE
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----------------------GDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      +..++++..+...+++.+.++|+|||  .+++..+..                      ..+.+++.+.++++||.+..+
T Consensus       108 ~~~~l~~~~~~~~~l~~~~~~L~pgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~  185 (219)
T 1vlm_A          108 MVTTICFVDDPERALKEAYRILKKGG--YLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV  185 (219)
T ss_dssp             EESCGGGSSCHHHHHHHHHHHEEEEE--EEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             EcchHhhccCHHHHHHHHHHHcCCCc--EEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence            99999998899999999999999999  555554321                      135678889999999997665


Q ss_pred             ec
Q 021691          272 EN  273 (309)
Q Consensus       272 ~~  273 (309)
                      ..
T Consensus       186 ~~  187 (219)
T 1vlm_A          186 VQ  187 (219)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.37  E-value=1.4e-12  Score=112.94  Aligned_cols=100  Identities=15%  Similarity=0.066  Sum_probs=77.3

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      +.+|||+|||+|..++.+|+.++ +.+|+++|.++++++.+++|++.++..  ..++++...+..+.......++||+|+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--~~~i~~~~gda~~~l~~~~~~~fD~V~  134 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS--PSRVRFLLSRPLDVMSRLANDSYQLVF  134 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC--GGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--cCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence            44999999999999999998764 679999999999999999999998873  135666654332211111257899999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +..   .......+++.+.++|+|||
T Consensus       135 ~d~---~~~~~~~~l~~~~~~LkpGG  157 (221)
T 3dr5_A          135 GQV---SPMDLKALVDAAWPLLRRGG  157 (221)
T ss_dssp             ECC---CTTTHHHHHHHHHHHEEEEE
T ss_pred             EcC---cHHHHHHHHHHHHHHcCCCc
Confidence            843   24556789999999999999

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.37  E-value=2.9e-12  Score=117.54  Aligned_cols=108  Identities=16%  Similarity=0.257  Sum_probs=84.6

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY  204 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~  204 (309)
                      .+.......++++|||+|||+|.+++.+++. ++.+|+++|.+ .+++.+++++..|++.   .++++...+..+.  +.
T Consensus        29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~--~~  101 (328)
T 1g6q_1           29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFS---DKITLLRGKLEDV--HL  101 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCT---TTEEEEESCTTTS--CC
T ss_pred             HHHhhHhhcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCC---CCEEEEECchhhc--cC
Confidence            3433344567899999999999999998875 66799999999 5999999999999873   4577776665433  23


Q ss_pred             CCCCccEEEEcCC---CCCcccHHHHHHHHHHHHhcCC
Q 021691          205 IVDTFDVIVASDC---TFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       205 ~~~~fDvIi~~d~---ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ..++||+|++..+   +.+......++..+.++|+|||
T Consensus       102 ~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG  139 (328)
T 1g6q_1          102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGG  139 (328)
T ss_dssp             SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEE
T ss_pred             CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCe
Confidence            3468999999754   3345678889999999999999

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.37  E-value=4e-13  Score=126.92  Aligned_cols=140  Identities=14%  Similarity=0.062  Sum_probs=103.5

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+++.+.......++.+|||+|||+|..+..+++.  +.+|+++|.++.+++.++++    +..     .  ....+..
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~-----~--~~~~~~~  159 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIR-----V--RTDFFEK  159 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCC-----E--ECSCCSH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCC-----c--ceeeech
Confidence            345666666666667899999999999999998875  45999999999999998865    221     0  0000000


Q ss_pred             C---CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec------------------CCchHHHHH
Q 021691          200 D---DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK------------------RGDSLDKFL  258 (309)
Q Consensus       200 ~---~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~------------------r~~~~~~f~  258 (309)
                      .   ..+..+++||+|++..++++..+...+++.++++|+|||  .+++..+.                  +..+.+.+.
T Consensus       160 ~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  237 (416)
T 4e2x_A          160 ATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDG--VFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQ  237 (416)
T ss_dssp             HHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEE--EEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHH
T ss_pred             hhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCe--EEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHH
Confidence            0   011124789999999999999999999999999999999  55555432                  123557888


Q ss_pred             HHHHhCCCeEEEEecc
Q 021691          259 EEIEGNHLHFSIIENY  274 (309)
Q Consensus       259 ~~~~~~G~~~~~~~~~  274 (309)
                      +.++++||.+..++.+
T Consensus       238 ~ll~~aGf~~~~~~~~  253 (416)
T 4e2x_A          238 GMAQRCGFELVDVQRL  253 (416)
T ss_dssp             HHHHHTTEEEEEEEEE
T ss_pred             HHHHHcCCEEEEEEEc
Confidence            9999999998776654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.36  E-value=1e-11  Score=109.05  Aligned_cols=131  Identities=11%  Similarity=0.095  Sum_probs=90.8

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc--------cCCCCCCceEEEEeeCCCCC-CC
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN--------SGAFGGTTVKSMTLHWNQDD-FP  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n--------~~~~~~~~v~~~~l~w~~~~-~~  203 (309)
                      .++.+|||+|||+|..++.+|+..+..+|+++|+++.+++.+++|+..+        ++    .++.+...|..... ..
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~----~nv~~~~~D~~~~l~~~  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF----QNINVLRGNAMKFLPNF  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT----TTEEEEECCTTSCGGGT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC----CcEEEEeccHHHHHHHh
Confidence            4678999999999999999999876679999999999999999999877        43    35777766654311 11


Q ss_pred             CCCCCccEEEEcCCCCCcc--------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEE
Q 021691          204 YIVDTFDVIVASDCTFFKE--------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~--------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      ...+.+|.|+...+--+..        ....++..+.++|++||  .+++.+ ......+...+.+.+.+. ++.+
T Consensus       124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG--~l~~~t-d~~~~~~~~~~~~~~~~~-~~~~  195 (246)
T 2vdv_E          124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGG--VVYTIT-DVKDLHEWMVKHLEEHPL-FERL  195 (246)
T ss_dssp             SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEE--EEEEEE-SCHHHHHHHHHHHHHSTT-EEEC
T ss_pred             ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCC--EEEEEe-ccHHHHHHHHHHHHhCcC-eEec
Confidence            3356899998653211100        11589999999999999  444433 333333445556777775 4444

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.36  E-value=2.7e-12  Score=109.26  Aligned_cols=118  Identities=13%  Similarity=0.079  Sum_probs=87.9

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+..++...  +.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++...      .++.+...+....
T Consensus        31 ~~~~~l~~~--~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~------~~i~~~~~d~~~~  101 (215)
T 2pxx_A           31 SFRALLEPE--LRPEDRILVLGCGNSALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHV------PQLRWETMDVRKL  101 (215)
T ss_dssp             HHHHHHGGG--CCTTCCEEEETCTTCSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTC------TTCEEEECCTTSC
T ss_pred             HHHHHHHHh--cCCCCeEEEECCCCcHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccC------CCcEEEEcchhcC
Confidence            355666554  256789999999999999998886 3348999999999999999886531      2456666655432


Q ss_pred             CCCCCCCCccEEEEcCCCCC---------------cccHHHHHHHHHHHHhcCCCeEEEEEeecCC
Q 021691          201 DFPYIVDTFDVIVASDCTFF---------------KEFHKDLARIIKFLLKKVGPSEALFFSPKRG  251 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~---------------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~  251 (309)
                        +...++||+|+++.++++               ......+++.+.++|+|+|  .+++..+..+
T Consensus       102 --~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~li~~~~~~~  163 (215)
T 2pxx_A          102 --DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGG--RFISMTSAAP  163 (215)
T ss_dssp             --CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEE--EEEEEESCCH
T ss_pred             --CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCC--EEEEEeCCCc
Confidence              334578999999776643               2356889999999999999  6666666553

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.36  E-value=5.1e-12  Score=118.62  Aligned_cols=152  Identities=14%  Similarity=0.019  Sum_probs=100.6

Q ss_pred             cCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691          107 IDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG  186 (309)
Q Consensus       107 ~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~  186 (309)
                      .-.||+.  |+.... ..++....  .+|++|||+|||+|..++.+|+. ++ +|+++|.|+.+++.+++|++.|++.  
T Consensus       192 ~~~tG~f--~dqr~~-r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~-ga-~V~avDis~~al~~a~~n~~~ng~~--  262 (393)
T 4dmg_A          192 AQKTGYY--LDQREN-RRLFEAMV--RPGERVLDVYSYVGGFALRAARK-GA-YALAVDKDLEALGVLDQAALRLGLR--  262 (393)
T ss_dssp             CCTTSSC--GGGHHH-HHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHHTCC--
T ss_pred             ccccCcC--CCHHHH-HHHHHHHh--cCCCeEEEcccchhHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHhCCC--
Confidence            3467764  443322 33343222  24899999999999999998875 44 5999999999999999999999884  


Q ss_pred             CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHH
Q 021691          187 GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKF  257 (309)
Q Consensus       187 ~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f  257 (309)
                       .+  +...|..+.. ....+.||+|++..+.|..         ..+..++..+.++|+|||  .++++++......+.|
T Consensus       263 -~~--~~~~D~~~~l-~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG--~Lv~~s~s~~~~~~~f  336 (393)
T 4dmg_A          263 -VD--IRHGEALPTL-RGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEG--FLWLSSCSYHLRLEDL  336 (393)
T ss_dssp             -CE--EEESCHHHHH-HTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEE--EEEEEECCTTSCHHHH
T ss_pred             -Cc--EEEccHHHHH-HHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEECCCCCCHHHH
Confidence             22  2222221110 1113349999995444332         355678889999999999  6666666655444454


Q ss_pred             H----HHHHhCCCeEEEEec
Q 021691          258 L----EEIEGNHLHFSIIEN  273 (309)
Q Consensus       258 ~----~~~~~~G~~~~~~~~  273 (309)
                      .    +.+.+.|..++.++.
T Consensus       337 ~~~v~~a~~~~g~~~~i~~~  356 (393)
T 4dmg_A          337 LEVARRAAADLGRRLRVHRV  356 (393)
T ss_dssp             HHHHHHHHHHHTCCEEEEEE
T ss_pred             HHHHHHHHHHhCCeEEEEEE
Confidence            4    345556777766654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.36  E-value=8.1e-12  Score=114.68  Aligned_cols=132  Identities=16%  Similarity=0.077  Sum_probs=88.6

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHh-------ccCCCCCCceEEEEeeCCCCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDA-------NSGAFGGTTVKSMTLHWNQDDF  202 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~-------n~~~~~~~~v~~~~l~w~~~~~  202 (309)
                      ...+|.+|||+|||+|..++.+++..++ .+|+++|.++.+++.+++|+..       |++.....++.+...|......
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~  181 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  181 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence            5568899999999999999999887543 7999999999999999999985       3321112357776666554321


Q ss_pred             CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHh--CCCeEEE
Q 021691          203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEG--NHLHFSI  270 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~--~G~~~~~  270 (309)
                      +...++||+|++...     ....++..+.++|+|||  .+++..+ .......+.+.+++  .++....
T Consensus       182 ~~~~~~fD~V~~~~~-----~~~~~l~~~~~~LkpgG--~lv~~~~-~~~~~~~~~~~l~~~~~~~~~~~  243 (336)
T 2b25_A          182 DIKSLTFDAVALDML-----NPHVTLPVFYPHLKHGG--VCAVYVV-NITQVIELLDGIRTCELALSCEK  243 (336)
T ss_dssp             ------EEEEEECSS-----STTTTHHHHGGGEEEEE--EEEEEES-SHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             ccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCCc--EEEEEeC-CHHHHHHHHHHHHhcCCCcccce
Confidence            223457999998432     22337899999999999  5555444 33344556666664  3444433

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.36  E-value=1.3e-12  Score=113.89  Aligned_cols=101  Identities=21%  Similarity=0.328  Sum_probs=81.8

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCCCcc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVDTFD  210 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~~fD  210 (309)
                      ..++++|||+|||+|..++.+|+..++.+|+++|+++.+++.+++++..+++.   .++.+...+..+. .+ ...++||
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-~~~~~~~~fD  144 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE---NQVRIIEGNALEQ-FENVNDKVYD  144 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT---TTEEEEESCGGGC-HHHHTTSCEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECCHHHH-HHhhccCCcc
Confidence            34688999999999999999998666789999999999999999999988873   4677776665432 12 2257899


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +|++..   .......+++.+.++|+|||
T Consensus       145 ~V~~~~---~~~~~~~~l~~~~~~LkpgG  170 (232)
T 3ntv_A          145 MIFIDA---AKAQSKKFFEIYTPLLKHQG  170 (232)
T ss_dssp             EEEEET---TSSSHHHHHHHHGGGEEEEE
T ss_pred             EEEEcC---cHHHHHHHHHHHHHhcCCCe
Confidence            999853   35567889999999999999

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.35  E-value=1.1e-11  Score=108.29  Aligned_cols=128  Identities=19%  Similarity=0.199  Sum_probs=94.1

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY  204 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~  204 (309)
                      ++.......++.+|||+|||+|..++.+++.  +.+|+++|.++.+++.+++|+..+++.   .++.+...++.+..  .
T Consensus        82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~--~  154 (248)
T 2yvl_A           82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLG---KNVKFFNVDFKDAE--V  154 (248)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCC---TTEEEECSCTTTSC--C
T ss_pred             HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCC---CcEEEEEcChhhcc--c
Confidence            3444445567899999999999999999887  679999999999999999999888762   35666666554321  1


Q ss_pred             CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      ...+||+|+++.     .+...+++.+.++|+++|  .+++..+.. .....+.+.+++. |..
T Consensus       155 ~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG--~l~~~~~~~-~~~~~~~~~l~~~-f~~  209 (248)
T 2yvl_A          155 PEGIFHAAFVDV-----REPWHYLEKVHKSLMEGA--PVGFLLPTA-NQVIKLLESIENY-FGN  209 (248)
T ss_dssp             CTTCBSEEEECS-----SCGGGGHHHHHHHBCTTC--EEEEEESSH-HHHHHHHHHSTTT-EEE
T ss_pred             CCCcccEEEECC-----cCHHHHHHHHHHHcCCCC--EEEEEeCCH-HHHHHHHHHHHhh-CCc
Confidence            346799999842     345678899999999999  565555432 3455666777666 553

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.35  E-value=1.6e-12  Score=112.12  Aligned_cols=108  Identities=11%  Similarity=0.041  Sum_probs=82.8

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC----CCC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP----YIV  206 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~----~~~  206 (309)
                      ..++++|||+|||+|..++.+++.++ +.+|+++|.++.+++.+++++..++..   .++.+...+..+....    ...
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~  138 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS---DKIGLRLSPAKDTLAELIHAGQA  138 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCHHHHHHHHHTTTCT
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CceEEEeCCHHHHHHHhhhccCC
Confidence            34678999999999999999998776 689999999999999999999988873   3577666554221100    011


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ++||+|++..   .......+++.+.++|+|||  .+++..
T Consensus       139 ~~fD~v~~~~---~~~~~~~~l~~~~~~L~pgG--~lv~~~  174 (225)
T 3tr6_A          139 WQYDLIYIDA---DKANTDLYYEESLKLLREGG--LIAVDN  174 (225)
T ss_dssp             TCEEEEEECS---CGGGHHHHHHHHHHHEEEEE--EEEEEC
T ss_pred             CCccEEEECC---CHHHHHHHHHHHHHhcCCCc--EEEEeC
Confidence            6899999743   25567889999999999999  555443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.35  E-value=1.7e-12  Score=121.59  Aligned_cols=135  Identities=21%  Similarity=0.133  Sum_probs=96.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--CCCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP--YIVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~--~~~~~fDv  211 (309)
                      ++++|||+|||+|..++.+|+.  +.+|+++|.++.+++.+++|+..|++.    ++.+...|..+....  ....+||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~----~~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLG----NVRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCT----TEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCC----CceEEECCHHHHHHHHHhcCCCeeE
Confidence            7889999999999999999887  679999999999999999999999873    355555543221100  01468999


Q ss_pred             EEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH----HHHHhCCCeEEEEeccCc
Q 021691          212 IVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL----EEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       212 Ii~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~----~~~~~~G~~~~~~~~~~~  276 (309)
                      |++..+.+..         .....++..+.++|+|+|  .+++++.......+.|.    +.+.+.|..++.++....
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~~~~  358 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGG--ILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRGQ  358 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEE--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            9994443332         456778899999999999  66666555433333333    456677877777665443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.35  E-value=5.1e-12  Score=114.75  Aligned_cols=111  Identities=17%  Similarity=0.048  Sum_probs=83.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC---CCCceEEEEeeCCCCC----CCCCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF---GGTTVKSMTLHWNQDD----FPYIV  206 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~---~~~~v~~~~l~w~~~~----~~~~~  206 (309)
                      ++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++...++...   ...++.+...|.....    .+...
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            6789999999999999988774 56799999999999999999887653100   0135667777665443    11124


Q ss_pred             CCccEEEEcCCCCCc----ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          207 DTFDVIVASDCTFFK----EFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~----~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ++||+|+++.++++.    .+...+++.+.++|+|||  .+++..
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG--~li~~~  155 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGG--YFIGTT  155 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEE--EEEEEE
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCc--EEEEec
Confidence            589999999999775    456789999999999999  455444

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.35  E-value=2.8e-12  Score=116.29  Aligned_cols=130  Identities=10%  Similarity=0.086  Sum_probs=83.6

Q ss_pred             cccHHHHHHHHhhCc-CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCC--CceEE
Q 021691          116 WPSEDVLAFFSLSHA-DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGG--TTVKS  192 (309)
Q Consensus       116 W~sa~~La~~l~~~~-~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~--~~v~~  192 (309)
                      |-.+..+..++.... ...++.+|||||||+|.....+++. ++.+|+|+|+++.||+.|+++....+.....  ..+.+
T Consensus        29 ~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f  107 (302)
T 2vdw_A           29 YVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDY  107 (302)
T ss_dssp             HHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEE
T ss_pred             HHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccch
Confidence            444444554443211 1124789999999999765554553 4579999999999999999987765431000  01333


Q ss_pred             EEeeCCCCC------CCCCCCCccEEEEcCCCCC---cccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          193 MTLHWNQDD------FPYIVDTFDVIVASDCTFF---KEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       193 ~~l~w~~~~------~~~~~~~fDvIi~~d~ly~---~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ...+...+.      .....++||+|+|..++++   ......+++.+.++|+|||  .+++.++
T Consensus       108 ~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG--~~i~~~~  170 (302)
T 2vdw_A          108 IQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGG--KVLITTM  170 (302)
T ss_dssp             EECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEE--EEEEEEE
T ss_pred             hhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCC--EEEEEeC
Confidence            333331111      1123578999999888754   3466899999999999999  5555443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.34  E-value=1.8e-12  Score=117.73  Aligned_cols=136  Identities=12%  Similarity=0.011  Sum_probs=92.4

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++++|||||||+|..+..+++..+..+|+++|+++.+++.+++++..........++++...|..........++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            35789999999999999998886667799999999999999999874311111134566666554322111135689999


Q ss_pred             EEcCCCCCcccH----HHHHHHHHHHHhcCCCeEEEEEeecC---CchHHHHHHHHHhCCCeEEE
Q 021691          213 VASDCTFFKEFH----KDLARIIKFLLKKVGPSEALFFSPKR---GDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       213 i~~d~ly~~~~~----~~ll~~l~~lLk~~G~~~~ii~~~~r---~~~~~~f~~~~~~~G~~~~~  270 (309)
                      ++....+.....    ..+++.++++|+|+|  .+++.....   ......+.+.+++.||....
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG--~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~  236 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDG--ICCNQGESIWLDLELIEKMSRFIRETGFASVQ  236 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEE--EEEEEECCTTTCHHHHHHHHHHHHHHTCSEEE
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCc--EEEEecCCcccchHHHHHHHHHHHhCCCCcEE
Confidence            994433321111    578999999999999  455443321   23567788889999997543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.34  E-value=5.3e-12  Score=116.54  Aligned_cols=130  Identities=15%  Similarity=0.111  Sum_probs=96.7

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...++.+|||+|||+|..+..+++..+..+++++|. +.++.  ++++...+.   ..++++...|.. ..  .+  +||
T Consensus       181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~---~~~v~~~~~d~~-~~--~p--~~D  249 (348)
T 3lst_A          181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDV---AGRWKVVEGDFL-RE--VP--HAD  249 (348)
T ss_dssp             CCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGG---TTSEEEEECCTT-TC--CC--CCS
T ss_pred             CccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCC---CCCeEEEecCCC-CC--CC--CCc
Confidence            344678999999999999999999888889999998 55554  333222233   246777777764 22  22  899


Q ss_pred             EEEEcCCCCCcccH--HHHHHHHHHHHhcCCCeEEEEEeecC-----------------------CchHHHHHHHHHhCC
Q 021691          211 VIVASDCTFFKEFH--KDLARIIKFLLKKVGPSEALFFSPKR-----------------------GDSLDKFLEEIEGNH  265 (309)
Q Consensus       211 vIi~~d~ly~~~~~--~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------~~~~~~f~~~~~~~G  265 (309)
                      +|++..++|+..+.  ..+++.++++|+|||  .+++.....                       ..+.+++.+.++++|
T Consensus       250 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG--~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG  327 (348)
T 3lst_A          250 VHVLKRILHNWGDEDSVRILTNCRRVMPAHG--RVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAG  327 (348)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTCCTTC--EEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTT
T ss_pred             EEEEehhccCCCHHHHHHHHHHHHHhcCCCC--EEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCC
Confidence            99999999987766  699999999999999  666655311                       235667888899999


Q ss_pred             CeEEEEec
Q 021691          266 LHFSIIEN  273 (309)
Q Consensus       266 ~~~~~~~~  273 (309)
                      |+...+..
T Consensus       328 f~~~~~~~  335 (348)
T 3lst_A          328 LRLDRVVG  335 (348)
T ss_dssp             EEEEEEEE
T ss_pred             CceEEEEE
Confidence            98766543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.34  E-value=1e-11  Score=114.86  Aligned_cols=139  Identities=17%  Similarity=0.075  Sum_probs=100.6

Q ss_pred             cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      -...++..+.......++.+|||+|||+|.+++.+|... +..+|+++|+++.+++.+++|+..+++.    .+.+...|
T Consensus       187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~----~i~~~~~D  262 (354)
T 3tma_A          187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS----WIRFLRAD  262 (354)
T ss_dssp             CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT----TCEEEECC
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC----ceEEEeCC
Confidence            345677777766666778999999999999999988876 5679999999999999999999999873    56666665


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCcc---------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCe
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFKE---------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~~---------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~  267 (309)
                      ..+..  .....||+|+++.+ |...         .+..+++.+.++|+|||  .+++.++..    ..+.+..+ .|++
T Consensus       263 ~~~~~--~~~~~~D~Ii~npP-yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG--~l~i~t~~~----~~~~~~~~-~g~~  332 (354)
T 3tma_A          263 ARHLP--RFFPEVDRILANPP-HGLRLGRKEGLFHLYWDFLRGALALLPPGG--RVALLTLRP----ALLKRALP-PGFA  332 (354)
T ss_dssp             GGGGG--GTCCCCSEEEECCC-SCC----CHHHHHHHHHHHHHHHHTSCTTC--EEEEEESCH----HHHHHHCC-TTEE
T ss_pred             hhhCc--cccCCCCEEEECCC-CcCccCCcccHHHHHHHHHHHHHHhcCCCc--EEEEEeCCH----HHHHHHhh-cCcE
Confidence            54322  22356899999554 4421         23778999999999999  566655432    22223333 7777


Q ss_pred             EEE
Q 021691          268 FSI  270 (309)
Q Consensus       268 ~~~  270 (309)
                      ...
T Consensus       333 ~~~  335 (354)
T 3tma_A          333 LRH  335 (354)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            644

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.34  E-value=1.6e-13  Score=119.94  Aligned_cols=146  Identities=14%  Similarity=0.051  Sum_probs=94.6

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      +-.++..|.+.+........|++|||||||+|.++..+++. ++.+|+++|+++.|++.++++....... ...++..  
T Consensus        18 vsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~-~~~~~~~--   93 (232)
T 3opn_A           18 VSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVM-EQFNFRN--   93 (232)
T ss_dssp             SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEE-CSCCGGG--
T ss_pred             cCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCcccccc-ccceEEE--
Confidence            56677788877776655567899999999999999998886 5579999999999999876653221110 0001110  


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe-ec-------------------CCchH
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS-PK-------------------RGDSL  254 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~-~~-------------------r~~~~  254 (309)
                      +..  ...  ....||.+.+ |+++..  ...+++.++++|+|||  .+++.. +.                   ...+.
T Consensus        94 ~~~--~~~--~~~~~d~~~~-D~v~~~--l~~~l~~i~rvLkpgG--~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~  164 (232)
T 3opn_A           94 AVL--ADF--EQGRPSFTSI-DVSFIS--LDLILPPLYEILEKNG--EVAALIKPQFEAGREQVGKNGIIRDPKVHQMTI  164 (232)
T ss_dssp             CCG--GGC--CSCCCSEEEE-CCSSSC--GGGTHHHHHHHSCTTC--EEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHH
T ss_pred             eCH--hHc--CcCCCCEEEE-EEEhhh--HHHHHHHHHHhccCCC--EEEEEECcccccCHHHhCcCCeecCcchhHHHH
Confidence            000  111  1112565544 444432  3789999999999999  454441 10                   01245


Q ss_pred             HHHHHHHHhCCCeEEEEec
Q 021691          255 DKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       255 ~~f~~~~~~~G~~~~~~~~  273 (309)
                      +++.+.++++||.+..+..
T Consensus       165 ~~l~~~l~~aGf~v~~~~~  183 (232)
T 3opn_A          165 EKVLKTATQLGFSVKGLTF  183 (232)
T ss_dssp             HHHHHHHHHHTEEEEEEEE
T ss_pred             HHHHHHHHHCCCEEEEEEE
Confidence            5788889999999877654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.34  E-value=2e-11  Score=105.51  Aligned_cols=106  Identities=16%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDT  208 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~  208 (309)
                      .+.++.+|||+|||+|..++.+++..+ ..+|+++|.++.+++.+++++..+      .++.+...|...... ....++
T Consensus        70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER------RNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC------TTEEEEECCTTCGGGGTTTCCC
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc------CCCEEEEccCCCcchhhcccCC
Confidence            456788999999999999999998754 479999999999999999988655      246666665543211 122358


Q ss_pred             ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ||+|++..+  .......++..+.++|+|||  .+++.
T Consensus       144 ~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG--~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVA--QPTQAKILIDNAEVYLKRGG--YGMIA  177 (227)
T ss_dssp             EEEEEECCC--STTHHHHHHHHHHHHEEEEE--EEEEE
T ss_pred             ceEEEECCC--CHhHHHHHHHHHHHhcCCCC--EEEEE
Confidence            999998543  33334455999999999999  44444

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.34  E-value=2.5e-12  Score=120.92  Aligned_cols=136  Identities=22%  Similarity=0.143  Sum_probs=96.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC-CCCCCceEEEEeeCCCCCCC--CCCCCc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG-AFGGTTVKSMTLHWNQDDFP--YIVDTF  209 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~-~~~~~~v~~~~l~w~~~~~~--~~~~~f  209 (309)
                      .+|++|||+|||+|..++.+|+. ++.+|+++|+++.+++.+++|+..|++ .   .++.+...|.......  ....+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~---~~v~~~~~D~~~~~~~~~~~~~~f  294 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDL---SKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCG---GGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCc---cceEEEECCHHHHHHHHHhcCCCC
Confidence            46889999999999999998875 467999999999999999999999986 3   2466665544321100  013579


Q ss_pred             cEEEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH----HHHHhCCCeEEEEecc
Q 021691          210 DVIVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL----EEIEGNHLHFSIIENY  274 (309)
Q Consensus       210 DvIi~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~----~~~~~~G~~~~~~~~~  274 (309)
                      |+|++..+.+..         .....++..+.++|+|+|  .+++++.......+.|.    +.+.+.|..++.++..
T Consensus       295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~~  370 (396)
T 3c0k_A          295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGG--ILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQF  370 (396)
T ss_dssp             EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEE--EEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCc--EEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEC
Confidence            999995444322         567889999999999999  56665554433333333    3556778777766543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.34  E-value=6.8e-12  Score=115.97  Aligned_cols=110  Identities=16%  Similarity=0.208  Sum_probs=86.1

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      ..+.+.......++++|||+|||+|.+++.+++. ++.+|+++|.++ +++.++++++.|++.   .++.+...++.+..
T Consensus        38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~---~~v~~~~~d~~~~~  112 (348)
T 2y1w_A           38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLT---DRIVVIPGKVEEVS  112 (348)
T ss_dssp             HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCT---TTEEEEESCTTTCC
T ss_pred             HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCC---CcEEEEEcchhhCC
Confidence            3344555556678999999999999999998775 667999999996 889999999998873   46777777665432


Q ss_pred             CCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCC
Q 021691          202 FPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G  239 (309)
                         ..++||+|++..+.++.  +.....+..++++|+|+|
T Consensus       113 ---~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG  149 (348)
T 2y1w_A          113 ---LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSG  149 (348)
T ss_dssp             ---CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEE
T ss_pred             ---CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCe
Confidence               23579999998777753  445677778899999999

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.34  E-value=7.1e-12  Score=111.72  Aligned_cols=131  Identities=16%  Similarity=0.179  Sum_probs=95.5

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhc-c-CCCCCCceEEEEeeCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDAN-S-GAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n-~-~~~~~~~v~~~~l~w~~~~  201 (309)
                      .+.......++.+|||+|||+|.++..+++.. +..+|+++|.++.+++.+++|+..+ + +   ..++.+...|.... 
T Consensus        90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~---~~~v~~~~~d~~~~-  165 (280)
T 1i9g_A           90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP---PDNWRLVVSDLADS-  165 (280)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC---CTTEEEECSCGGGC-
T ss_pred             HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC---CCcEEEEECchHhc-
Confidence            33333456678999999999999999988864 4679999999999999999999887 4 2   13566666555433 


Q ss_pred             CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHh-CCCeE
Q 021691          202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEG-NHLHF  268 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~-~G~~~  268 (309)
                       ....++||+|++..     .+...+++.+.++|+++|  .+++..+.. ....++.+.+++ .+|..
T Consensus       166 -~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~pgG--~l~~~~~~~-~~~~~~~~~l~~~~~f~~  224 (280)
T 1i9g_A          166 -ELPDGSVDRAVLDM-----LAPWEVLDAVSRLLVAGG--VLMVYVATV-TQLSRIVEALRAKQCWTE  224 (280)
T ss_dssp             -CCCTTCEEEEEEES-----SCGGGGHHHHHHHEEEEE--EEEEEESSH-HHHHHHHHHHHHHSSBCC
T ss_pred             -CCCCCceeEEEECC-----cCHHHHHHHHHHhCCCCC--EEEEEeCCH-HHHHHHHHHHHhcCCcCC
Confidence             22346899999932     244578999999999999  555555433 455667777776 67753

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.34  E-value=2e-12  Score=121.24  Aligned_cols=130  Identities=14%  Similarity=0.032  Sum_probs=91.1

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--CCCCCCcc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--PYIVDTFD  210 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--~~~~~~fD  210 (309)
                      .+|++|||+|||+|.+++.+|+. ++.+|+++|.++.+++.+++|++.|++..  .++.+...|..+...  .....+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~--~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDM--ANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCC--TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCc--cceEEEECCHHHHHHHHHHhCCCcc
Confidence            46889999999999999998874 56699999999999999999999998731  156666554432100  01135799


Q ss_pred             EEEEcCCCCC---------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHH----HHhCCCe
Q 021691          211 VIVASDCTFF---------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEE----IEGNHLH  267 (309)
Q Consensus       211 vIi~~d~ly~---------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~----~~~~G~~  267 (309)
                      +|++..+.+.         ...+..++..+.++|+|+|  .+++.+.......+.|.+.    +.+.|..
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENG--LIIASTNAANMTVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEE--EEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCc--EEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence            9999544431         1235567788899999999  5666665554445555544    4456666

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.34  E-value=5e-12  Score=110.53  Aligned_cols=128  Identities=13%  Similarity=0.114  Sum_probs=88.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC--CCCCCceEEEEeeCCCCCCC--CCCCCc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG--AFGGTTVKSMTLHWNQDDFP--YIVDTF  209 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~--~~~~~~v~~~~l~w~~~~~~--~~~~~f  209 (309)
                      ++.+|||||||+|..++.+|+..+...|+|+|+++.|++.+++++.....  ..+..++.+...|.... .+  ...++|
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-l~~~~~~~~~  124 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFFYKGQL  124 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHCCTTCE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-hhhhCCCcCe
Confidence            45689999999999999999988888999999999999999988764210  01124577777665431 11  335789


Q ss_pred             cEEEEcCCCCCcc--------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCC
Q 021691          210 DVIVASDCTFFKE--------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH  265 (309)
Q Consensus       210 DvIi~~d~ly~~~--------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G  265 (309)
                      |.|++..+-.+..        ..+.+++.+.++|++||  .+++.+ ..........+.+.+.|
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG--~l~~~t-d~~~~~~~~~~~l~~~~  185 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGG--LVYTIT-DVLELHDWMCTHFEEHP  185 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEE--EEEEEE-SCHHHHHHHHHHHHTST
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCC--EEEEEe-CCHHHHHHHHHHHHHCC
Confidence            9998753221111        12579999999999999  444443 33334455667777776

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.34  E-value=3.5e-12  Score=120.72  Aligned_cols=119  Identities=13%  Similarity=0.102  Sum_probs=86.0

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHH-------HHHHHhccCCCCCCceEEEEee-C
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYI-------QRNVDANSGAFGGTTVKSMTLH-W  197 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~-------~~n~~~n~~~~~~~~v~~~~l~-w  197 (309)
                      +.....+.+|.+|||||||+|.+++.+|+..++.+|+++|+++.+++.+       ++|+..+++..  .++.+...+ +
T Consensus       234 ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~--~nV~~i~gD~~  311 (433)
T 1u2z_A          234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL--NNVEFSLKKSF  311 (433)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC--CCEEEEESSCS
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCC--CceEEEEcCcc
Confidence            3333456688999999999999999999987777999999999999888       88888877421  355554431 1


Q ss_pred             CCC-CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          198 NQD-DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       198 ~~~-~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      ... .......+||+|+++.+++ ..+....++.+.+.|++||  .+++..+.
T Consensus       312 ~~~~~~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpGG--~lVi~d~f  361 (433)
T 1u2z_A          312 VDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGC--KIISLKSL  361 (433)
T ss_dssp             TTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTC--EEEESSCS
T ss_pred             ccccccccccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCCe--EEEEeecc
Confidence            110 0001136799999987775 4567788899999999999  55555433

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.34  E-value=4.4e-12  Score=114.05  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=87.3

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      -|....|.+++.......++.+|||+|||+|..++.+++. +..+|+++|+++.+++.+++|+..+++.   .++.+...
T Consensus       105 r~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~---~~v~~~~~  180 (284)
T 1nv8_A          105 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVS---DRFFVRKG  180 (284)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCT---TSEEEEES
T ss_pred             ChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC---CceEEEEC
Confidence            4555666666655433336789999999999999999998 8889999999999999999999999873   35888888


Q ss_pred             eCCCCCCCCCCCCc---cEEEEcCCCCCccc-------------------HHHHHHHHH-HHHhcCC
Q 021691          196 HWNQDDFPYIVDTF---DVIVASDCTFFKEF-------------------HKDLARIIK-FLLKKVG  239 (309)
Q Consensus       196 ~w~~~~~~~~~~~f---DvIi~~d~ly~~~~-------------------~~~ll~~l~-~lLk~~G  239 (309)
                      ||....    .++|   |+|+++.+......                   -..+++.+. +.+++||
T Consensus       181 D~~~~~----~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG  243 (284)
T 1nv8_A          181 EFLEPF----KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGK  243 (284)
T ss_dssp             STTGGG----GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTC
T ss_pred             cchhhc----ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCC
Confidence            776421    2468   99999644321110                   115788888 9999999

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.34  E-value=8.1e-12  Score=109.42  Aligned_cols=102  Identities=20%  Similarity=0.182  Sum_probs=79.0

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++++|||+|||+|..+..+++.  +.+|+++|.++.+++.+++++..++.     ++.+...+.....   ..++||+
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-----~v~~~~~d~~~~~---~~~~fD~  108 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-----KIEFLQGDVLEIA---FKNEFDA  108 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEESCGGGCC---CCSCEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC-----ceEEEECChhhcc---cCCCccE
Confidence            346789999999999999998886  56999999999999999999987764     3566666554322   2367999


Q ss_pred             EEEcCC---CCCcccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          212 IVASDC---TFFKEFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       212 Ii~~d~---ly~~~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      |++...   .+...+...+++.+.++|+|||  .+++
T Consensus       109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG--~li~  143 (252)
T 1wzn_A          109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGG--VFIT  143 (252)
T ss_dssp             EEECSSGGGGSCHHHHHHHHHHHHHHEEEEE--EEEE
T ss_pred             EEEcCCchhcCCHHHHHHHHHHHHHHcCCCe--EEEE
Confidence            998532   2234567889999999999999  4444

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.33  E-value=1.8e-12  Score=112.59  Aligned_cols=152  Identities=13%  Similarity=0.054  Sum_probs=97.7

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCC-HHHHHHH---HHHHHhccCCCCCCce
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGN-PQVVDYI---QRNVDANSGAFGGTTV  190 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~-~~~l~~~---~~n~~~n~~~~~~~~v  190 (309)
                      .|.....+..+.      .++.+|||||||+|..++.+|+..++.+|+++|++ +.|++.+   ++++..++.    .++
T Consensus        11 ~~~~~~~~~~~~------~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~----~~v   80 (225)
T 3p2e_A           11 DLSKDELTEIIG------QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL----SNV   80 (225)
T ss_dssp             CCCHHHHHHHHT------TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC----SSE
T ss_pred             cCCHHHHHHHhC------CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC----CCe
Confidence            577666655432      25779999999999999999877778899999999 7777766   766666555    356


Q ss_pred             EEEEeeCCCCCCCCCCCCccEEEEcCCCCC-----cccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------C
Q 021691          191 KSMTLHWNQDDFPYIVDTFDVIVASDCTFF-----KEFHKDLARIIKFLLKKVGPSEALFFSPKR--------------G  251 (309)
Q Consensus       191 ~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~-----~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------~  251 (309)
                      .+...+...... ...+.+|.|.++.+...     ......+++.++++|||||  .+++.....              .
T Consensus        81 ~~~~~d~~~l~~-~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG--~l~i~~~~~~~~~~~~~~~~~~~~  157 (225)
T 3p2e_A           81 VFVIAAAESLPF-ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEA--HFEFVTTYSDSYEEAEIKKRGLPL  157 (225)
T ss_dssp             EEECCBTTBCCG-GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEE--EEEEEECCCC--------------
T ss_pred             EEEEcCHHHhhh-hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCc--EEEEEEeccccchhchhhhcCCCC
Confidence            666655443211 01134555554322111     1123568899999999999  555522110              0


Q ss_pred             chHH-----HHHHHHHhCCCeEEEEeccCchhh
Q 021691          252 DSLD-----KFLEEIEGNHLHFSIIENYNAEIW  279 (309)
Q Consensus       252 ~~~~-----~f~~~~~~~G~~~~~~~~~~~~~~  279 (309)
                      .+..     ++.+.++++||.+..++.++...+
T Consensus       158 ~~~~~~~~~el~~~l~~aGf~v~~~~~~~~~~~  190 (225)
T 3p2e_A          158 LSKAYFLSEQYKAELSNSGFRIDDVKELDNEYV  190 (225)
T ss_dssp             CCHHHHHSHHHHHHHHHHTCEEEEEEEECHHHH
T ss_pred             CChhhcchHHHHHHHHHcCCCeeeeeecCHHHH
Confidence            0111     277788899999998887776544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.33  E-value=1e-11  Score=113.31  Aligned_cols=149  Identities=11%  Similarity=-0.034  Sum_probs=99.6

Q ss_pred             Cceeecc-cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691          111 GLVCHWP-SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGT  188 (309)
Q Consensus       111 G~~~~W~-sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~  188 (309)
                      |...+-+ ++..++..+    ...+|.+|||+|||+|..++.+|+..+ ..+|+++|+++.+++.+++|+..+++.    
T Consensus        98 G~~~~qd~~s~l~~~~l----~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~----  169 (315)
T 1ixk_A           98 GLIYIQEASSMYPPVAL----DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL----  169 (315)
T ss_dssp             TSEEECCHHHHHHHHHH----CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC----
T ss_pred             ceEEEeCHHHHHHHHHh----CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC----
Confidence            5543433 344445544    345788999999999999999998764 479999999999999999999998873    


Q ss_pred             ceEEEEeeCCCCCCCCCCCCccEEEEcCCC------CCcc----------------cHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          189 TVKSMTLHWNQDDFPYIVDTFDVIVASDCT------FFKE----------------FHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       189 ~v~~~~l~w~~~~~~~~~~~fDvIi~~d~l------y~~~----------------~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ++.+...|.....  ...++||+|++..+.      ....                ....+++.+.++|+|||  .+++.
T Consensus       170 ~v~~~~~D~~~~~--~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG--~lv~s  245 (315)
T 1ixk_A          170 NVILFHSSSLHIG--ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG--ILVYS  245 (315)
T ss_dssp             SEEEESSCGGGGG--GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEE--EEEEE
T ss_pred             eEEEEECChhhcc--cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC--EEEEE
Confidence            4666555443221  124689999984331      1111                12578999999999999  56665


Q ss_pred             eec--CCchHHHHHHHHHhCCCeEEEE
Q 021691          247 SPK--RGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       247 ~~~--r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      ++.  ..+........+++.||....+
T Consensus       246 tcs~~~~Ene~~v~~~l~~~~~~~~~~  272 (315)
T 1ixk_A          246 TCSLEPEENEFVIQWALDNFDVELLPL  272 (315)
T ss_dssp             ESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred             eCCCChHHhHHHHHHHHhcCCCEEecC
Confidence            443  2333334445566778765433

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.32  E-value=3.3e-12  Score=112.28  Aligned_cols=123  Identities=12%  Similarity=-0.020  Sum_probs=82.9

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHh--cCCcEEEEEcCCHHHHHHHHHHHHhc---cCCCC----------
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAAT--TEALEVVISDGNPQVVDYIQRNVDAN---SGAFG----------  186 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~--~~~~~V~~tD~~~~~l~~~~~n~~~n---~~~~~----------  186 (309)
                      +...+.......++.+|||+|||+|..++.+++.  .++.+|+++|+++.+++.+++|+..+   ++...          
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~  118 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER  118 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence            3334443332335679999999999999998887  55679999999999999999998776   43100          


Q ss_pred             ------------CCceE-------------EEEeeCCCCCCC---CCCCCccEEEEcCCCCCc---------ccHHHHHH
Q 021691          187 ------------GTTVK-------------SMTLHWNQDDFP---YIVDTFDVIVASDCTFFK---------EFHKDLAR  229 (309)
Q Consensus       187 ------------~~~v~-------------~~~l~w~~~~~~---~~~~~fDvIi~~d~ly~~---------~~~~~ll~  229 (309)
                                  ...+.             +...|+......   ....+||+|+++.++...         .....+++
T Consensus       119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~  198 (250)
T 1o9g_A          119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR  198 (250)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHH
Confidence                        00033             555554331100   023479999997654432         34568999


Q ss_pred             HHHHHHhcCCCeEEEEE
Q 021691          230 IIKFLLKKVGPSEALFF  246 (309)
Q Consensus       230 ~l~~lLk~~G~~~~ii~  246 (309)
                      .+.++|+|||  .+++.
T Consensus       199 ~~~~~LkpgG--~l~~~  213 (250)
T 1o9g_A          199 SLASALPAHA--VIAVT  213 (250)
T ss_dssp             HHHHHSCTTC--EEEEE
T ss_pred             HHHHhcCCCc--EEEEe
Confidence            9999999999  55553

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.32  E-value=3.3e-11  Score=120.51  Aligned_cols=121  Identities=11%  Similarity=0.094  Sum_probs=88.5

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccC--CCCCCceEEEEeeCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSG--AFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~--~~~~~~v~~~~l~w~~  199 (309)
                      .+++.......++++|||||||+|.+++.+++.. +..+|+++|+++.|++.+++++.....  ..+..++.+...|...
T Consensus       710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d  789 (950)
T 3htx_A          710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE  789 (950)
T ss_dssp             HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred             HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence            3444443334478999999999999999988874 236999999999999999987764311  1122467776666543


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcccHH--HHHHHHHHHHhcCCCeEEEEEee
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKEFHK--DLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~~~~--~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                        .+...++||+|++..++++..+..  .+++.+.++|+||   .+++.++
T Consensus       790 --Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG---~LIISTP  835 (950)
T 3htx_A          790 --FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK---LLIVSTP  835 (950)
T ss_dssp             --CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS---EEEEEEC
T ss_pred             --CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC---EEEEEec
Confidence              334457899999999999876544  5899999999997   3555543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.32  E-value=6.4e-13  Score=116.75  Aligned_cols=131  Identities=16%  Similarity=0.112  Sum_probs=94.7

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC-----
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI-----  205 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~-----  205 (309)
                      ..++++|||+|||+|..++.+|+.++ +.+|+++|+++++++.+++|+..+++.   .++++...+..+.. +..     
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---~~i~~~~gda~~~l-~~~~~~~~  133 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE---HKIKLRLGPALDTL-HSLLNEGG  133 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT---TTEEEEESCHHHHH-HHHHHHHC
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHHHH-HHHhhccC
Confidence            44678999999999999999999775 679999999999999999999998873   46776665432211 111     


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCC-------------chHHHHHHHHHhC-CCeEEEE
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRG-------------DSLDKFLEEIEGN-HLHFSII  271 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~-------------~~~~~f~~~~~~~-G~~~~~~  271 (309)
                      .++||+|++...   ......+++.+.++|+|||  .+++-.....             ....+|.+.+.+. .+....+
T Consensus       134 ~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG--~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  208 (242)
T 3r3h_A          134 EHQFDFIFIDAD---KTNYLNYYELALKLVTPKG--LIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL  208 (242)
T ss_dssp             SSCEEEEEEESC---GGGHHHHHHHHHHHEEEEE--EEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             CCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCe--EEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE
Confidence            368999998432   5667889999999999999  4444332211             1256677777665 3444444

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.32  E-value=1.1e-11  Score=106.12  Aligned_cols=118  Identities=16%  Similarity=0.114  Sum_probs=86.6

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      .|......+ .+.......++.+|||+|||+|..+..+++..+ ..+|+++|.++.+++.+++++..++..    ++.+.
T Consensus        59 ~~~~~~~~~-~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~v~~~  133 (215)
T 2yxe_A           59 TISAIHMVG-MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD----NVIVI  133 (215)
T ss_dssp             EECCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT----TEEEE
T ss_pred             EeCcHHHHH-HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CeEEE
Confidence            454444444 344444566889999999999999999998863 379999999999999999999887762    46666


Q ss_pred             EeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          194 TLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       194 ~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..+.....  ...++||+|++..++++..      +.+.++|+++|  .+++..
T Consensus       134 ~~d~~~~~--~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG--~lv~~~  177 (215)
T 2yxe_A          134 VGDGTLGY--EPLAPYDRIYTTAAGPKIP------EPLIRQLKDGG--KLLMPV  177 (215)
T ss_dssp             ESCGGGCC--GGGCCEEEEEESSBBSSCC------HHHHHTEEEEE--EEEEEE
T ss_pred             ECCcccCC--CCCCCeeEEEECCchHHHH------HHHHHHcCCCc--EEEEEE
Confidence            55542211  1246799999998887654      47899999999  555544

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.31  E-value=6.7e-12  Score=115.51  Aligned_cols=117  Identities=13%  Similarity=0.206  Sum_probs=88.8

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|++|||+|||+|.+++. |+  ++.+|+++|.++.+++.+++|++.|++.   .++.+...|.....     .+||+|
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~---~~v~~~~~D~~~~~-----~~fD~V  262 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLE---HKIIPILSDVREVD-----VKGNRV  262 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEESCGGGCC-----CCEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECChHHhc-----CCCcEE
Confidence            3788999999999999999 76  5789999999999999999999999873   35666666544322     689999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC-CCeE
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN-HLHF  268 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~-G~~~  268 (309)
                      ++ |+.+..   ..++..+.++|+++|  .+++.+....  .+.+.+.+.+. |+.+
T Consensus       263 i~-dpP~~~---~~~l~~~~~~L~~gG--~l~~~~~~~~--~~~~~~~l~~~~~~~i  311 (336)
T 2yx1_A          263 IM-NLPKFA---HKFIDKALDIVEEGG--VIHYYTIGKD--FDKAIKLFEKKCDCEV  311 (336)
T ss_dssp             EE-CCTTTG---GGGHHHHHHHEEEEE--EEEEEEEESS--SHHHHHHHHHHSEEEE
T ss_pred             EE-CCcHhH---HHHHHHHHHHcCCCC--EEEEEEeecC--chHHHHHHHHhcCCcE
Confidence            99 444443   267888999999999  5555544443  46666777666 5543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.31  E-value=2.9e-12  Score=120.49  Aligned_cols=133  Identities=17%  Similarity=0.105  Sum_probs=95.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--CCCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP--YIVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~--~~~~~fDv  211 (309)
                      ++++|||+|||+|..++.+|+. ++.+|+++|+++.+++.+++|+..|++.   .++.+...|.......  ....+||+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~  292 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVE---DRMKFIVGSAFEEMEKLQKKGEKFDI  292 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEECCHHHHHHHHHhhCCCCCE
Confidence            7899999999999999998875 6679999999999999999999999873   2566666554321100  01458999


Q ss_pred             EEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHH----HHHHhCCCeEEEEe
Q 021691          212 IVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFL----EEIEGNHLHFSIIE  272 (309)
Q Consensus       212 Ii~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~----~~~~~~G~~~~~~~  272 (309)
                      |++..+.+..         .....++..+.++|+|+|  .++++++......+.|.    +.+.+.|..++.++
T Consensus       293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~  364 (396)
T 2as0_A          293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGG--ILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE  364 (396)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEE--EEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESS
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            9995444332         456778899999999999  66666655544444443    34556676665554

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.31  E-value=4e-12  Score=118.70  Aligned_cols=122  Identities=15%  Similarity=0.093  Sum_probs=87.4

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHH-------hccCCCCCCceEEEE
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVD-------ANSGAFGGTTVKSMT  194 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~-------~n~~~~~~~~v~~~~  194 (309)
                      +...+.....+.+|.+|||||||+|.+.+.+|+..++.+|+|+|+++.+++.++++++       .+++.  ..++.+..
T Consensus       161 ~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~--~~rVefi~  238 (438)
T 3uwp_A          161 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK--HAEYTLER  238 (438)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC--CCEEEEEE
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC--CCCeEEEE
Confidence            3334444445678899999999999999999988777789999999999999988763       34441  24677766


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      .|..+......-..||+|+++.++| ..+....+..+.+.|+|||  .+++...
T Consensus       239 GD~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGG--rIVssE~  289 (438)
T 3uwp_A          239 GDFLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGG--RIVSSKP  289 (438)
T ss_dssp             CCTTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTC--EEEESSC
T ss_pred             CcccCCccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCc--EEEEeec
Confidence            6554322111014699999976654 5666777788999999999  5555443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.31  E-value=3e-12  Score=111.23  Aligned_cols=106  Identities=14%  Similarity=0.161  Sum_probs=83.2

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC--CCCc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI--VDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~--~~~f  209 (309)
                      ..++++|||+|||+|..++.+++..++.+|+++|.++.+++.+++++..++..   .++.+...+..... +..  .++|
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~-~~~~~~~~f  127 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE---SRIELLFGDALQLG-EKLELYPLF  127 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCGGGSH-HHHTTSCCE
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEECCHHHHH-HhcccCCCc
Confidence            34678999999999999999999887789999999999999999999988763   35666665543211 111  4689


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      |+|++..+.   .....+++.+.++|+|||  .+++.
T Consensus       128 D~I~~~~~~---~~~~~~l~~~~~~L~pgG--~lv~~  159 (233)
T 2gpy_A          128 DVLFIDAAK---GQYRRFFDMYSPMVRPGG--LILSD  159 (233)
T ss_dssp             EEEEEEGGG---SCHHHHHHHHGGGEEEEE--EEEEE
T ss_pred             cEEEECCCH---HHHHHHHHHHHHHcCCCe--EEEEE
Confidence            999996543   367889999999999999  55554

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.31  E-value=1.3e-11  Score=112.65  Aligned_cols=113  Identities=18%  Similarity=0.112  Sum_probs=86.4

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ..+...+.......+|.+|||+|||+|..++.+++..+ ..+|+++|.++++++.+++++..+++.    ++.+...|..
T Consensus        61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~----~v~~~~~d~~  136 (317)
T 1dl5_A           61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE----NVIFVCGDGY  136 (317)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEESCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CeEEEECChh
Confidence            34444555545566889999999999999999998765 367999999999999999999988773    4666666654


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          199 QDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       199 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ...  ...++||+|++..++++..      +.+.++|+|||  .+++.
T Consensus       137 ~~~--~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG--~lvi~  174 (317)
T 1dl5_A          137 YGV--PEFSPYDVIFVTVGVDEVP------ETWFTQLKEGG--RVIVP  174 (317)
T ss_dssp             GCC--GGGCCEEEEEECSBBSCCC------HHHHHHEEEEE--EEEEE
T ss_pred             hcc--ccCCCeEEEEEcCCHHHHH------HHHHHhcCCCc--EEEEE
Confidence            322  1246899999988887654      57888999999  44443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.31  E-value=4.2e-13  Score=117.10  Aligned_cols=99  Identities=16%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.+++|+..+++.   .++.+...|+....   ..++||+|
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~---~~~~~D~v  148 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIA---DKIEFICGDFLLLA---SFLKADVV  148 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHHG---GGCCCSEE
T ss_pred             cCCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC---cCeEEEECChHHhc---ccCCCCEE
Confidence            36889999999999999999886  479999999999999999999998762   35777766654322   34689999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +++.++++.......+..+.++|+|+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~L~pgG  175 (241)
T 3gdh_A          149 FLSPPWGGPDYATAETFDIRTMMSPDG  175 (241)
T ss_dssp             EECCCCSSGGGGGSSSBCTTTSCSSCH
T ss_pred             EECCCcCCcchhhhHHHHHHhhcCCcc
Confidence            998888877766666777888899988

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.30  E-value=1.2e-11  Score=105.80  Aligned_cols=112  Identities=16%  Similarity=0.038  Sum_probs=84.9

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+     +.+|+++|.++.            .       +.+...+...  .+...++||+|
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~------------~-------~~~~~~d~~~--~~~~~~~fD~v  119 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI-----RNPVHCFDLASL------------D-------PRVTVCDMAQ--VPLEDESVDVA  119 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC-----CSCEEEEESSCS------------S-------TTEEESCTTS--CSCCTTCEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHh-----hccEEEEeCCCC------------C-------ceEEEecccc--CCCCCCCEeEE
Confidence            46789999999999987765     368999999886            1       1233333332  23345789999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-CchHHHHHHHHHhCCCeEEEEec
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      +++.++++ .+...+++.+.++|+|||  .+++..... ..+.+.+.+.++++||.+.....
T Consensus       120 ~~~~~l~~-~~~~~~l~~~~~~L~~gG--~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  178 (215)
T 2zfu_A          120 VFCLSLMG-TNIRDFLEEANRVLKPGG--LLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL  178 (215)
T ss_dssp             EEESCCCS-SCHHHHHHHHHHHEEEEE--EEEEEECGGGCSCHHHHHHHHHHTTEEEEEEEC
T ss_pred             EEehhccc-cCHHHHHHHHHHhCCCCe--EEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEec
Confidence            99999975 788999999999999999  566655433 34778899999999999876544

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.30  E-value=2.4e-11  Score=102.94  Aligned_cols=119  Identities=14%  Similarity=0.048  Sum_probs=81.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++++|||+|||+|.+++.+++. +..+|+++|+++.+++.+++|+.         ++.+...|....     .++||+
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---------~~~~~~~d~~~~-----~~~~D~  113 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSEI-----SGKYDT  113 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGGC-----CCCEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC---------CCEEEECcHHHC-----CCCeeE
Confidence            457889999999999999998876 56689999999999999998865         234444443321     268999


Q ss_pred             EEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691          212 IVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       212 Ii~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      |+++.++++...  ...+++.+.+++   |  .+++..  .+.+...+.+.+.+.| .++.+..
T Consensus       114 v~~~~p~~~~~~~~~~~~l~~~~~~~---g--~~~~~~--~~~~~~~~~~~~~~~g-~~~~~~~  169 (200)
T 1ne2_A          114 WIMNPPFGSVVKHSDRAFIDKAFETS---M--WIYSIG--NAKARDFLRREFSARG-DVFREEK  169 (200)
T ss_dssp             EEECCCC-------CHHHHHHHHHHE---E--EEEEEE--EGGGHHHHHHHHHHHE-EEEEEEE
T ss_pred             EEECCCchhccCchhHHHHHHHHHhc---C--cEEEEE--cCchHHHHHHHHHHCC-CEEEEEE
Confidence            999877766532  235666666665   4  333333  2345666777788888 7766554

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.30  E-value=6.1e-12  Score=109.81  Aligned_cols=109  Identities=17%  Similarity=0.108  Sum_probs=82.3

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-------
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-------  202 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-------  202 (309)
                      ...++++|||+|||+|..++.+++..+ +.+|+++|.++.+++.+++++..++..   .++.+...+......       
T Consensus        57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~v~~~~~d~~~~~~~~~~~~~  133 (239)
T 2hnk_A           57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE---NKIFLKLGSALETLQVLIDSKS  133 (239)
T ss_dssp             HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHHHHHHHHCSS
T ss_pred             HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCEEEEECCHHHHHHHHHhhcc
Confidence            344688999999999999999999876 679999999999999999999988763   346665554321100       


Q ss_pred             ------CCCC--CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          203 ------PYIV--DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       203 ------~~~~--~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                            ....  ++||+|++.   +.......+++.+.++|++||  .+++..
T Consensus       134 ~~~~~~~f~~~~~~fD~I~~~---~~~~~~~~~l~~~~~~L~pgG--~lv~~~  181 (239)
T 2hnk_A          134 APSWASDFAFGPSSIDLFFLD---ADKENYPNYYPLILKLLKPGG--LLIADN  181 (239)
T ss_dssp             CCGGGTTTCCSTTCEEEEEEC---SCGGGHHHHHHHHHHHEEEEE--EEEEEC
T ss_pred             cccccccccCCCCCcCEEEEe---CCHHHHHHHHHHHHHHcCCCe--EEEEEc
Confidence                  0111  689999986   335667889999999999999  455443

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.29  E-value=6.1e-12  Score=121.05  Aligned_cols=112  Identities=16%  Similarity=0.204  Sum_probs=87.0

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+.+.+.......++++|||+|||+|.+++.+++ .++.+|+++|.++ +++.+++++..|++.   .++++...++.+
T Consensus       144 ~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl~---~~v~~~~~d~~~  218 (480)
T 3b3j_A          144 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLT---DRIVVIPGKVEE  218 (480)
T ss_dssp             HHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTCT---TTEEEEESCTTT
T ss_pred             HHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCCC---CcEEEEECchhh
Confidence            33445555555566889999999999999999877 4677999999998 999999999999873   468888887764


Q ss_pred             CCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCC
Q 021691          200 DDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G  239 (309)
                      ..   ..++||+|++..+.|+.  +.....+..++++|+|||
T Consensus       219 ~~---~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG  257 (480)
T 3b3j_A          219 VS---LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSG  257 (480)
T ss_dssp             CC---CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEE
T ss_pred             Cc---cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCC
Confidence            32   23589999997766653  344556667789999999

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.29  E-value=8.8e-12  Score=102.30  Aligned_cols=131  Identities=13%  Similarity=0.068  Sum_probs=90.6

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      +.+...+.+.+.......++.+|||+|||+|..+..+++..+ ..+|+++|.++ +++.              .++.+..
T Consensus         4 ~r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------~~~~~~~   68 (180)
T 1ej0_A            4 SRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------VGVDFLQ   68 (180)
T ss_dssp             CHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------------TTEEEEE
T ss_pred             hhHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------------CcEEEEE
Confidence            344455666555544456788999999999999999988754 47999999998 6432              2455655


Q ss_pred             eeCCCCC----CC--CCCCCccEEEEcCCCCCcccH-----------HHHHHHHHHHHhcCCCeEEEEEeecCCchHHHH
Q 021691          195 LHWNQDD----FP--YIVDTFDVIVASDCTFFKEFH-----------KDLARIIKFLLKKVGPSEALFFSPKRGDSLDKF  257 (309)
Q Consensus       195 l~w~~~~----~~--~~~~~fDvIi~~d~ly~~~~~-----------~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f  257 (309)
                      .++....    .+  ...++||+|+++.+++.....           ..+++.+.++|+++|  .+++... .......+
T Consensus        69 ~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG--~l~~~~~-~~~~~~~~  145 (180)
T 1ej0_A           69 GDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGG--SFVVKVF-QGEGFDEY  145 (180)
T ss_dssp             SCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEE--EEEEEEE-SSTTHHHH
T ss_pred             cccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCc--EEEEEEe-cCCcHHHH
Confidence            5554321    00  234689999998887765444           688999999999999  5554444 33455667


Q ss_pred             HHHHHhC
Q 021691          258 LEEIEGN  264 (309)
Q Consensus       258 ~~~~~~~  264 (309)
                      .+.+++.
T Consensus       146 ~~~~~~~  152 (180)
T 1ej0_A          146 LREIRSL  152 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777664

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.29  E-value=1.2e-11  Score=107.62  Aligned_cols=112  Identities=19%  Similarity=0.272  Sum_probs=82.9

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +...+.......++.+|||+|||+|..+..+++..+ .+|+++|.++.+++.+++++..++..    ++.+...+.. ..
T Consensus        79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~----~v~~~~~d~~-~~  152 (235)
T 1jg1_A           79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVK----NVHVILGDGS-KG  152 (235)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCC----SEEEEESCGG-GC
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEECCcc-cC
Confidence            334444444566788999999999999999998866 79999999999999999999988762    3666665541 11


Q ss_pred             CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      .+ ...+||+|++..++.+..      +.+.++|++||  .+++...
T Consensus       153 ~~-~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG--~lvi~~~  190 (235)
T 1jg1_A          153 FP-PKAPYDVIIVTAGAPKIP------EPLIEQLKIGG--KLIIPVG  190 (235)
T ss_dssp             CG-GGCCEEEEEECSBBSSCC------HHHHHTEEEEE--EEEEEEC
T ss_pred             CC-CCCCccEEEECCcHHHHH------HHHHHhcCCCc--EEEEEEe
Confidence            11 124599999988776543      36889999999  5555444

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.29  E-value=3.6e-12  Score=112.22  Aligned_cols=101  Identities=14%  Similarity=0.073  Sum_probs=79.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC-----
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI-----  205 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~-----  205 (309)
                      ..++++|||+|||+|..++.+|+.++ +.+|+++|.++.+++.+++++..+++.   .++++...+..+. .+..     
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~i~~~~gda~~~-l~~l~~~~~  152 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD---HKIDFREGPALPV-LDEMIKDEK  152 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG---GGEEEEESCHHHH-HHHHHHSGG
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCeEEEECCHHHH-HHHHHhccC
Confidence            34678999999999999999999876 679999999999999999999988762   4566665543221 0111     


Q ss_pred             -CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          206 -VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       206 -~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                       .++||+|++...   ......+++.+.++|+|||
T Consensus       153 ~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG  184 (247)
T 1sui_A          153 NHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGG  184 (247)
T ss_dssp             GTTCBSEEEECSC---STTHHHHHHHHHHHBCTTC
T ss_pred             CCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCe
Confidence             468999998422   4567889999999999999

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.28  E-value=9.2e-12  Score=110.00  Aligned_cols=110  Identities=17%  Similarity=0.228  Sum_probs=80.6

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +.+++.....  ++++|||+|||+|..+..+++.  +.+|+++|.++.+++.++++...        .  +...+...  
T Consensus        44 ~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~--------~--~~~~d~~~--  107 (260)
T 2avn_A           44 IGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK--------N--VVEAKAED--  107 (260)
T ss_dssp             HHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS--------C--EEECCTTS--
T ss_pred             HHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC--------C--EEECcHHH--
Confidence            3444444322  6789999999999999998876  56999999999999999887431        1  23333322  


Q ss_pred             CCCCCCCccEEEEcCCCCC-cccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          202 FPYIVDTFDVIVASDCTFF-KEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~-~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      .+...++||+|++..++++ ..+...+++.+.++|+|||  .+++..+.
T Consensus       108 ~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~  154 (260)
T 2avn_A          108 LPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDG--LLIATVDN  154 (260)
T ss_dssp             CCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEE--EEEEEEEB
T ss_pred             CCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCe--EEEEEeCC
Confidence            2334578999999876554 3668999999999999999  55555443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.28  E-value=3.5e-11  Score=112.19  Aligned_cols=139  Identities=14%  Similarity=0.053  Sum_probs=98.1

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..++..+.... ..++.+|||+|||+|.+++.+|......+|+++|+++.+++.+++|+..+++.   .++.+...|...
T Consensus       204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~---~~i~~~~~D~~~  279 (373)
T 3tm4_A          204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL---DKIKFIQGDATQ  279 (373)
T ss_dssp             HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG---GGCEEEECCGGG
T ss_pred             HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC---CceEEEECChhh
Confidence            45665555544 56789999999999999999888744348999999999999999999999873   356776665543


Q ss_pred             CCCCCCCCCccEEEEcCCCCCc--------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEE
Q 021691          200 DDFPYIVDTFDVIVASDCTFFK--------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~--------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      .  +...++||+|+++.++...        ..+..+++.++++|  +|  .++++.+    ....+.+.+.+.||+....
T Consensus       280 ~--~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g--~~~~i~~----~~~~~~~~~~~~G~~~~~~  349 (373)
T 3tm4_A          280 L--SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EK--RGVFITT----EKKAIEEAIAENGFEIIHH  349 (373)
T ss_dssp             G--GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EE--EEEEEES----CHHHHHHHHHHTTEEEEEE
T ss_pred             C--CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CC--eEEEEEC----CHHHHHHHHHHcCCEEEEE
Confidence            2  2334689999995553321        12366778888877  34  3444443    2355667788899987654


Q ss_pred             e
Q 021691          272 E  272 (309)
Q Consensus       272 ~  272 (309)
                      .
T Consensus       350 ~  350 (373)
T 3tm4_A          350 R  350 (373)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.28  E-value=4.5e-12  Score=109.56  Aligned_cols=107  Identities=18%  Similarity=0.104  Sum_probs=80.9

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC----CC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY----IV  206 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~----~~  206 (309)
                      ..++++|||+|||+|..++.+++..+ +.+|+++|.++.+++.+++++..++..   .++.+...+..+.....    ..
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~i~~~~~d~~~~~~~~~~~~~~  143 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE---HKIDLRLKPALETLDELLAAGEA  143 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT---TTEEEEESCHHHHHHHHHHTTCT
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC---CeEEEEEcCHHHHHHHHHhcCCC
Confidence            34678999999999999999988765 679999999999999999999988763   35666555432110000    01


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ++||+|++...   ......+++.+.++|++||  .+++.
T Consensus       144 ~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG--~lv~~  178 (229)
T 2avd_A          144 GTFDVAVVDAD---KENCSAYYERCLQLLRPGG--ILAVL  178 (229)
T ss_dssp             TCEEEEEECSC---STTHHHHHHHHHHHEEEEE--EEEEE
T ss_pred             CCccEEEECCC---HHHHHHHHHHHHHHcCCCe--EEEEE
Confidence            68999999433   4556789999999999999  45443

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.28  E-value=9.3e-11  Score=108.52  Aligned_cols=133  Identities=12%  Similarity=0.055  Sum_probs=103.1

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ......++|+|+|||+|..++.+++.+|..+++..|. |.+++.+++++...+    ..+|++...|.-.+    +...+
T Consensus       175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~----~~rv~~~~gD~~~~----~~~~~  245 (353)
T 4a6d_A          175 FDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE----EEQIDFQEGDFFKD----PLPEA  245 (353)
T ss_dssp             SCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------CCSEEEEESCTTTS----CCCCC
T ss_pred             cCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc----cCceeeecCccccC----CCCCc
Confidence            3445668999999999999999999999999999995 899999998775443    25788887776432    22458


Q ss_pred             cEEEEcCCCCCcccH--HHHHHHHHHHHhcCCCeEEEEEeec------------------------CCchHHHHHHHHHh
Q 021691          210 DVIVASDCTFFKEFH--KDLARIIKFLLKKVGPSEALFFSPK------------------------RGDSLDKFLEEIEG  263 (309)
Q Consensus       210 DvIi~~d~ly~~~~~--~~ll~~l~~lLk~~G~~~~ii~~~~------------------------r~~~~~~f~~~~~~  263 (309)
                      |+|++..++|+..+.  ..+++.+++.|+|||  .+++....                        +..+.++|.+.+++
T Consensus       246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg--~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~  323 (353)
T 4a6d_A          246 DLYILARVLHDWADGKCSHLLERIYHTCKPGG--GILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSS  323 (353)
T ss_dssp             SEEEEESSGGGSCHHHHHHHHHHHHHHCCTTC--EEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHH
T ss_pred             eEEEeeeecccCCHHHHHHHHHHHHhhCCCCC--EEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence            999999999986554  578999999999999  67666521                        12356788899999


Q ss_pred             CCCeEEEEec
Q 021691          264 NHLHFSIIEN  273 (309)
Q Consensus       264 ~G~~~~~~~~  273 (309)
                      +||+...+..
T Consensus       324 AGf~~v~v~~  333 (353)
T 4a6d_A          324 AGFRDFQFKK  333 (353)
T ss_dssp             HTCEEEEEEC
T ss_pred             CCCceEEEEE
Confidence            9999766654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.27  E-value=8.8e-12  Score=116.14  Aligned_cols=147  Identities=16%  Similarity=0.124  Sum_probs=97.1

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..|..++...... .+++|||+|||+|.+++.+|+.  +.+|+++|+++.+++.+++|++.|++.    ++++...|..+
T Consensus       200 ~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~----~v~~~~~d~~~  272 (369)
T 3bt7_A          200 IQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHID----NVQIIRMAAEE  272 (369)
T ss_dssp             HHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCC----SEEEECCCSHH
T ss_pred             HHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEECCHHH
Confidence            5666666654433 3678999999999999988774  679999999999999999999999872    56665544321


Q ss_pred             CC--CCCC------------CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCC
Q 021691          200 DD--FPYI------------VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNH  265 (309)
Q Consensus       200 ~~--~~~~------------~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G  265 (309)
                      ..  ....            ..+||+|+. |+.+..     +...+.++|+++|  .+++.++ .+.++.+-+..+.+ |
T Consensus       273 ~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~-dPPr~g-----~~~~~~~~l~~~g--~ivyvsc-~p~t~ard~~~l~~-~  342 (369)
T 3bt7_A          273 FTQAMNGVREFNRLQGIDLKSYQCETIFV-DPPRSG-----LDSETEKMVQAYP--RILYISC-NPETLCKNLETLSQ-T  342 (369)
T ss_dssp             HHHHHSSCCCCTTGGGSCGGGCCEEEEEE-CCCTTC-----CCHHHHHHHTTSS--EEEEEES-CHHHHHHHHHHHHH-H
T ss_pred             HHHHHhhccccccccccccccCCCCEEEE-CcCccc-----cHHHHHHHHhCCC--EEEEEEC-CHHHHHHHHHHHhh-C
Confidence            10  0000            137999998 554431     2344556666777  5555544 44555544444543 6


Q ss_pred             CeEEEEeccCchhhhhhh
Q 021691          266 LHFSIIENYNAEIWKRHQ  283 (309)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~  283 (309)
                      +.++.+..+|.-++..|-
T Consensus       343 y~~~~~~~~D~FP~T~Hv  360 (369)
T 3bt7_A          343 HKVERLALFDQFPYTHHM  360 (369)
T ss_dssp             EEEEEEEEECCSTTSSCC
T ss_pred             cEEEEEEeeccCCCCCcE
Confidence            888878777765555443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.27  E-value=2e-11  Score=105.56  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=83.6

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      |.....+ ..+.......++.+|||+|||+|..+..+++..  .+|+++|.++.+++.+++++..++      ++.+...
T Consensus        53 ~~~~~~~-~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~------~v~~~~~  123 (231)
T 1vbf_A           53 TTALNLG-IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN------NIKLILG  123 (231)
T ss_dssp             ECCHHHH-HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS------SEEEEES
T ss_pred             cCCHHHH-HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC------CeEEEEC
Confidence            4443333 344444456678899999999999999998873  799999999999999999887654      4566665


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      +.....  ...++||+|++..++++..      ..+.++|+|||  .+++..+
T Consensus       124 d~~~~~--~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG--~l~~~~~  166 (231)
T 1vbf_A          124 DGTLGY--EEEKPYDRVVVWATAPTLL------CKPYEQLKEGG--IMILPIG  166 (231)
T ss_dssp             CGGGCC--GGGCCEEEEEESSBBSSCC------HHHHHTEEEEE--EEEEEEC
T ss_pred             Cccccc--ccCCCccEEEECCcHHHHH------HHHHHHcCCCc--EEEEEEc
Confidence            554311  1246899999998887654      46889999999  5555543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.27  E-value=1.2e-11  Score=110.46  Aligned_cols=142  Identities=12%  Similarity=0.012  Sum_probs=94.2

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      +++..++..+    ...+|.+|||+|||+|..+..+++..++ .+|+++|.++.+++.+++|+..++..    ++.+...
T Consensus        70 ~~s~l~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~----~v~~~~~  141 (274)
T 3ajd_A           70 ISSMIPPIVL----NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL----NTIIINA  141 (274)
T ss_dssp             SGGGHHHHHH----CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEES
T ss_pred             HHHHHHHHHh----CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC----cEEEEeC
Confidence            3444455544    2347889999999999999999887655 79999999999999999999998862    4666555


Q ss_pred             eCCCCCCC--CCCCCccEEEEcCCCCCc------------------ccHHHHHHHHHHHHhcCCCeEEEEEeec--CCch
Q 021691          196 HWNQDDFP--YIVDTFDVIVASDCTFFK------------------EFHKDLARIIKFLLKKVGPSEALFFSPK--RGDS  253 (309)
Q Consensus       196 ~w~~~~~~--~~~~~fDvIi~~d~ly~~------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~--r~~~  253 (309)
                      |.......  ...++||+|++..+....                  .....+++.+.++|+|||  .+++.++.  ..+.
T Consensus       142 D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~lv~stcs~~~~en  219 (274)
T 3ajd_A          142 DMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDG--ELVYSTCSMEVEEN  219 (274)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEE--EEEEEESCCCTTSS
T ss_pred             ChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCC--EEEEEECCCChHHh
Confidence            43221110  014579999984332211                  345789999999999999  56655432  2233


Q ss_pred             HHHHHHHHHhC-CCeE
Q 021691          254 LDKFLEEIEGN-HLHF  268 (309)
Q Consensus       254 ~~~f~~~~~~~-G~~~  268 (309)
                      .+.....++++ +|..
T Consensus       220 e~~v~~~l~~~~~~~~  235 (274)
T 3ajd_A          220 EEVIKYILQKRNDVEL  235 (274)
T ss_dssp             HHHHHHHHHHCSSEEE
T ss_pred             HHHHHHHHHhCCCcEE
Confidence            33333344443 4544

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.27  E-value=1.4e-11  Score=110.68  Aligned_cols=143  Identities=13%  Similarity=0.072  Sum_probs=95.3

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      +-.++..|...+....-..+|++|||+|||||.++..+++. ++.+|+++|.++.|++.+.++   +      .++....
T Consensus        66 vsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~---~------~rv~~~~  135 (291)
T 3hp7_A           66 VSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ---D------DRVRSME  135 (291)
T ss_dssp             SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT---C------TTEEEEC
T ss_pred             ccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh---C------cccceec
Confidence            56677888887776655567899999999999999987775 677999999999999874332   1      1111110


Q ss_pred             -eeCCCCCC-CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE-ee----cC---------------Cc
Q 021691          195 -LHWNQDDF-PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF-SP----KR---------------GD  252 (309)
Q Consensus       195 -l~w~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~-~~----~r---------------~~  252 (309)
                       .+...... ..+..+||+|++ |..++  ....++..+.++|+|||  .+++. .|    .+               ..
T Consensus       136 ~~ni~~l~~~~l~~~~fD~v~~-d~sf~--sl~~vL~e~~rvLkpGG--~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~  210 (291)
T 3hp7_A          136 QYNFRYAEPVDFTEGLPSFASI-DVSFI--SLNLILPALAKILVDGG--QVVALVKPQFEAGREQIGKNGIVRESSIHEK  210 (291)
T ss_dssp             SCCGGGCCGGGCTTCCCSEEEE-CCSSS--CGGGTHHHHHHHSCTTC--EEEEEECGGGTSCGGGCC-CCCCCCHHHHHH
T ss_pred             ccCceecchhhCCCCCCCEEEE-EeeHh--hHHHHHHHHHHHcCcCC--EEEEEECcccccChhhcCCCCccCCHHHHHH
Confidence             00000010 112235999998 44443  34789999999999999  45444 11    00               01


Q ss_pred             hHHHHHHHHHhCCCeEEEEe
Q 021691          253 SLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       253 ~~~~f~~~~~~~G~~~~~~~  272 (309)
                      ..+++.+.+.++||.+..+.
T Consensus       211 ~~~~v~~~~~~~Gf~v~~~~  230 (291)
T 3hp7_A          211 VLETVTAFAVDYGFSVKGLD  230 (291)
T ss_dssp             HHHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEE
Confidence            44567788899999987654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.27  E-value=1.6e-11  Score=107.63  Aligned_cols=131  Identities=11%  Similarity=0.044  Sum_probs=96.6

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ...+|||||||+|.+++.++...+..+|+++|+++.+++.++.|+..|+..     .++...|.   ....+.++||+|+
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-----~~~~v~D~---~~~~p~~~~DvaL  203 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-----HRTNVADL---LEDRLDEPADVTL  203 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-----EEEEECCT---TTSCCCSCCSEEE
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----ceEEEeee---cccCCCCCcchHH
Confidence            367999999999999999888778899999999999999999999999872     34444433   3334567899999


Q ss_pred             EcCCCCCcccH--HHHHHHHHHHHhcCCCeEEEEEeec-----CCc-----hHHHHHHHHHhCCCeEEEEeccCc
Q 021691          214 ASDCTFFKEFH--KDLARIIKFLLKKVGPSEALFFSPK-----RGD-----SLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       214 ~~d~ly~~~~~--~~ll~~l~~lLk~~G~~~~ii~~~~-----r~~-----~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                      ++..+++.++.  ..++ .+...|+++|   +++..+.     |..     -.+.|.+.+.+.|..++..+.-++
T Consensus       204 ~lkti~~Le~q~kg~g~-~ll~aL~~~~---vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~nE  274 (281)
T 3lcv_B          204 LLKTLPCLETQQRGSGW-EVIDIVNSPN---IVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGNE  274 (281)
T ss_dssp             ETTCHHHHHHHSTTHHH-HHHHHSSCSE---EEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             HHHHHHHhhhhhhHHHH-HHHHHhCCCC---EEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeecCe
Confidence            99988875432  3455 7888888888   5555544     211     123566667788998887765444

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.27  E-value=9.2e-12  Score=125.01  Aligned_cols=133  Identities=22%  Similarity=0.195  Sum_probs=95.6

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|++|||+|||+|.+++.+|+ .++.+|+++|.|+.+++.+++|++.|++..  .++.+...|.... .+...++||+|
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~-~ga~~V~aVD~s~~al~~a~~N~~~ngl~~--~~v~~i~~D~~~~-l~~~~~~fD~I  613 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGL-GGARSTTTVDMSRTYLEWAERNLRLNGLTG--RAHRLIQADCLAW-LREANEQFDLI  613 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCS--TTEEEEESCHHHH-HHHCCCCEEEE
T ss_pred             cCCCcEEEeeechhHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCc--cceEEEecCHHHH-HHhcCCCccEE
Confidence            3689999999999999999777 467789999999999999999999998841  3566665543321 11124689999


Q ss_pred             EEcCCCCC-----------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691          213 VASDCTFF-----------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       213 i~~d~ly~-----------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      ++..+.|.           ...+..++..+.++|+|||  .+++.+..+.....  .+.+.+.|+.++.+..
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG--~L~~s~~~~~~~~~--~~~l~~~g~~~~~i~~  681 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGG--TIMFSNNKRGFRMD--LDGLAKLGLKAQEITQ  681 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEE--EEEEEECCTTCCCC--HHHHHHTTEEEEECTT
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCc--EEEEEECCcccccC--HHHHHHcCCceeeeee
Confidence            99554432           2456778999999999999  56655544322111  4566778887665543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.26  E-value=4.1e-12  Score=108.59  Aligned_cols=103  Identities=17%  Similarity=0.053  Sum_probs=80.4

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .++++|||+|||+|..++.+++..+ +.+|+++|.++.+++.+++++..++..   .++++...+..+. .+...+ ||+
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~-~~~~~~-fD~  129 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI---DRVELQVGDPLGI-AAGQRD-IDI  129 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG---GGEEEEESCHHHH-HTTCCS-EEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC---ceEEEEEecHHHH-hccCCC-CCE
Confidence            3578999999999999999998776 679999999999999999999988762   3566665554321 122235 999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      |++..   .......+++.+.++|+|||  .+++
T Consensus       130 v~~~~---~~~~~~~~l~~~~~~LkpgG--~lv~  158 (210)
T 3c3p_A          130 LFMDC---DVFNGADVLERMNRCLAKNA--LLIA  158 (210)
T ss_dssp             EEEET---TTSCHHHHHHHHGGGEEEEE--EEEE
T ss_pred             EEEcC---ChhhhHHHHHHHHHhcCCCe--EEEE
Confidence            99852   34567889999999999999  4444

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.26  E-value=4.4e-11  Score=106.89  Aligned_cols=107  Identities=13%  Similarity=0.071  Sum_probs=82.2

Q ss_pred             CCeEEEeCCCC---ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC---------
Q 021691          135 SKRVIELGSGY---GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF---------  202 (309)
Q Consensus       135 g~~VLELG~Gt---G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~---------  202 (309)
                      ..+|||||||+   |.+...+++..+..+|+++|.++.|++.+++++..+      .++.+...|..+...         
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~------~~v~~~~~D~~~~~~~~~~~~~~~  151 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD------PNTAVFTADVRDPEYILNHPDVRR  151 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC------TTEEEEECCTTCHHHHHHSHHHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC------CCeEEEEeeCCCchhhhccchhhc
Confidence            47999999999   988777667667789999999999999999987432      356666666543210         


Q ss_pred             CCCCCCccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          203 PYIVDTFDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      .....+||+|+++.++|+..+  ...+++.+.++|+|||  .+++....
T Consensus       152 ~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG--~l~i~~~~  198 (274)
T 2qe6_A          152 MIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGS--YLFMTSLV  198 (274)
T ss_dssp             HCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTC--EEEEEEEB
T ss_pred             cCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCc--EEEEEEec
Confidence            011247999999999998665  8999999999999999  55555543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.26  E-value=8.2e-12  Score=109.17  Aligned_cols=101  Identities=13%  Similarity=-0.003  Sum_probs=79.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-----CC
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY-----IV  206 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~-----~~  206 (309)
                      .++++|||+|||+|..++.+|+..+ ..+|+++|.++.+++.+++|++.+++.   .++.+...+..+.....     ..
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---~~i~~~~gda~~~l~~l~~~~~~~  145 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE---HKINFIESDAMLALDNLLQGQESE  145 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEESCHHHHHHHHHHSTTCT
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHHHHHHHHhccCCC
Confidence            4678999999999999999999876 679999999999999999999988762   35666655443210000     14


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ++||+|++.   ........+++.+.++|+|||
T Consensus       146 ~~fD~I~~d---~~~~~~~~~l~~~~~~L~pGG  175 (237)
T 3c3y_A          146 GSYDFGFVD---ADKPNYIKYHERLMKLVKVGG  175 (237)
T ss_dssp             TCEEEEEEC---SCGGGHHHHHHHHHHHEEEEE
T ss_pred             CCcCEEEEC---CchHHHHHHHHHHHHhcCCCe
Confidence            689999984   235677899999999999999

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.25  E-value=2.7e-11  Score=101.90  Aligned_cols=128  Identities=15%  Similarity=0.004  Sum_probs=81.8

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC---------cEEEEEcCCHHHHHHHHHHHHhccCCCCCCc
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA---------LEVVISDGNPQVVDYIQRNVDANSGAFGGTT  189 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~---------~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~  189 (309)
                      +..|.+.......+.++.+|||+|||+|..++.+++..++         .+|+++|.++.+           ..    ..
T Consensus         7 ~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~----~~   71 (196)
T 2nyu_A            7 AFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL----EG   71 (196)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC----TT
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC----CC
Confidence            4445555444444567899999999999999999998765         799999999831           11    23


Q ss_pred             eEEE-EeeCCCCCC------CCCCCCccEEEEcCCCCCc----ccH-------HHHHHHHHHHHhcCCCeEEEEEeecCC
Q 021691          190 VKSM-TLHWNQDDF------PYIVDTFDVIVASDCTFFK----EFH-------KDLARIIKFLLKKVGPSEALFFSPKRG  251 (309)
Q Consensus       190 v~~~-~l~w~~~~~------~~~~~~fDvIi~~d~ly~~----~~~-------~~ll~~l~~lLk~~G~~~~ii~~~~r~  251 (309)
                      +... ..|+.....      .....+||+|++..+++..    .+.       ..+++.+.++|+|||  .+++.. ...
T Consensus        72 ~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~lv~~~-~~~  148 (196)
T 2nyu_A           72 ATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGG--TFLCKT-WAG  148 (196)
T ss_dssp             CEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEE--EEEEEE-CCS
T ss_pred             CeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCC--EEEEEe-cCC
Confidence            3444 333322110      0113579999996544331    222       478899999999999  444443 333


Q ss_pred             chHHHHHHHHHhC
Q 021691          252 DSLDKFLEEIEGN  264 (309)
Q Consensus       252 ~~~~~f~~~~~~~  264 (309)
                      .....+.+.+++.
T Consensus       149 ~~~~~~~~~l~~~  161 (196)
T 2nyu_A          149 SQSRRLQRRLTEE  161 (196)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH
Confidence            4456677666664

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.24  E-value=6.5e-11  Score=113.10  Aligned_cols=149  Identities=11%  Similarity=0.015  Sum_probs=99.6

Q ss_pred             Cceeec-ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691          111 GLVCHW-PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGT  188 (309)
Q Consensus       111 G~~~~W-~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~  188 (309)
                      |...+- +++..++..+    ...+|.+|||+|||+|..+..++...++ .+|+++|+++.+++.+++|+..+++.    
T Consensus       239 G~~~~qd~~s~l~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~----  310 (450)
T 2yxl_A          239 GKIIVQEEASAVASIVL----DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK----  310 (450)
T ss_dssp             TSEEECCHHHHHHHHHH----CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC----
T ss_pred             ceEEecCchhHHHHHhc----CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC----
Confidence            443233 3445555544    3456889999999999999999988765 79999999999999999999998872    


Q ss_pred             ceEEEEeeCCCCCCCCCCCCccEEEEcCCC------CCcccH----------------HHHHHHHHHHHhcCCCeEEEEE
Q 021691          189 TVKSMTLHWNQDDFPYIVDTFDVIVASDCT------FFKEFH----------------KDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       189 ~v~~~~l~w~~~~~~~~~~~fDvIi~~d~l------y~~~~~----------------~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ++.+...|..........++||+|++..+.      ....+.                ..+++.+.++|+|||  .+++.
T Consensus       311 ~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG--~lvy~  388 (450)
T 2yxl_A          311 IVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGG--RLLYT  388 (450)
T ss_dssp             SEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEE--EEEEE
T ss_pred             cEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEE
Confidence            466666555433211223679999973222      111111                578999999999999  56655


Q ss_pred             eecC--CchHHHHHHHHHhC-CCeEE
Q 021691          247 SPKR--GDSLDKFLEEIEGN-HLHFS  269 (309)
Q Consensus       247 ~~~r--~~~~~~f~~~~~~~-G~~~~  269 (309)
                      ++.-  .+..+.+...++++ +|..+
T Consensus       389 tcs~~~~ene~~v~~~l~~~~~~~~~  414 (450)
T 2yxl_A          389 TCSIFKEENEKNIRWFLNVHPEFKLV  414 (450)
T ss_dssp             ESCCCGGGTHHHHHHHHHHCSSCEEC
T ss_pred             eCCCChhhHHHHHHHHHHhCCCCEEe
Confidence            5432  23333444555665 66654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.24  E-value=1.1e-10  Score=110.71  Aligned_cols=143  Identities=16%  Similarity=0.179  Sum_probs=98.9

Q ss_pred             cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      .+..|.+++..   ..++.+|||+|||+|.+++.+|+.  +.+|+++|+++.+++.+++|+..|++    . +.+...|.
T Consensus       277 ~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl----~-v~~~~~d~  346 (425)
T 2jjq_A          277 QAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNV----D-AEFEVASD  346 (425)
T ss_dssp             HHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTC----C-EEEEECCT
T ss_pred             HHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC----c-EEEEECCh
Confidence            45566666665   457889999999999999998886  67999999999999999999999987    2 66666655


Q ss_pred             CCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCch
Q 021691          198 NQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAE  277 (309)
Q Consensus       198 ~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~  277 (309)
                      .+..    ..+||+|++ |+.+. ...+.+++.+.. |+|+|   +++.++ .+.++.+-+..+.   +.++.+..+|.-
T Consensus       347 ~~~~----~~~fD~Vv~-dPPr~-g~~~~~~~~l~~-l~p~g---ivyvsc-~p~tlarDl~~l~---y~l~~~~~~DmF  412 (425)
T 2jjq_A          347 REVS----VKGFDTVIV-DPPRA-GLHPRLVKRLNR-EKPGV---IVYVSC-NPETFARDVKMLD---YRIDEIVALDMF  412 (425)
T ss_dssp             TTCC----CTTCSEEEE-CCCTT-CSCHHHHHHHHH-HCCSE---EEEEES-CHHHHHHHHHHSS---CCEEEEEEECCS
T ss_pred             HHcC----ccCCCEEEE-cCCcc-chHHHHHHHHHh-cCCCc---EEEEEC-ChHHHHhHHhhCe---EEEEEEEEECcC
Confidence            4322    127999999 44443 223456666654 78888   444333 3445444444443   777777777766


Q ss_pred             hhhhhhc
Q 021691          278 IWKRHQM  284 (309)
Q Consensus       278 ~~~~~~~  284 (309)
                      ++..|-+
T Consensus       413 P~T~HvE  419 (425)
T 2jjq_A          413 PHTPHVE  419 (425)
T ss_dssp             TTSSCCE
T ss_pred             CCCceEE
Confidence            6655533

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.24  E-value=1.2e-10  Score=98.44  Aligned_cols=129  Identities=12%  Similarity=0.085  Sum_probs=85.3

Q ss_pred             cHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC--CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          118 SEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE--ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       118 sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~--~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      ++..|.+.......+.++.+|||||||+|..+..+++..+  ..+|+++|.++..           ..    .++.+...
T Consensus         6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~----~~v~~~~~   70 (201)
T 2plw_A            6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI----PNVYFIQG   70 (201)
T ss_dssp             THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC----TTCEEEEC
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC----CCceEEEc
Confidence            4556666555443345788999999999999999998877  5799999999831           11    23555555


Q ss_pred             eCCCCCC-----------------------CCCCCCccEEEEcCCCCCc----ccH-------HHHHHHHHHHHhcCCCe
Q 021691          196 HWNQDDF-----------------------PYIVDTFDVIVASDCTFFK----EFH-------KDLARIIKFLLKKVGPS  241 (309)
Q Consensus       196 ~w~~~~~-----------------------~~~~~~fDvIi~~d~ly~~----~~~-------~~ll~~l~~lLk~~G~~  241 (309)
                      |+.....                       .....+||+|++..++++.    .+.       ..+++.+.++|+|||  
T Consensus        71 d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG--  148 (201)
T 2plw_A           71 EIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGG--  148 (201)
T ss_dssp             CTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEE--
T ss_pred             cccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCC--
Confidence            5543320                       0124689999997665542    122       237888999999999  


Q ss_pred             EEEEEeecCCchHHHHHHHHHhC
Q 021691          242 EALFFSPKRGDSLDKFLEEIEGN  264 (309)
Q Consensus       242 ~~ii~~~~r~~~~~~f~~~~~~~  264 (309)
                      .+++ ..........+...++..
T Consensus       149 ~lv~-~~~~~~~~~~l~~~l~~~  170 (201)
T 2plw_A          149 TYIV-KMYLGSQTNNLKTYLKGM  170 (201)
T ss_dssp             EEEE-EEECSTTHHHHHHHHHTT
T ss_pred             EEEE-EEeCCCCHHHHHHHHHHH
Confidence            4444 333444556677777664

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.23  E-value=1e-10  Score=108.81  Aligned_cols=124  Identities=12%  Similarity=0.030  Sum_probs=93.4

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..+++.++..+++++|. +.+++.++++          .++++...|..+   +.+. . |+
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~---~~p~-~-D~  264 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----------SGVEHLGGDMFD---GVPK-G-DA  264 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTT---CCCC-C-SE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----------CCCEEEecCCCC---CCCC-C-CE
Confidence            44568999999999999999999988889999999 8888766531          357777777653   2222 2 99


Q ss_pred             EEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecC----------------------------CchHHHHHHHH
Q 021691          212 IVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKR----------------------------GDSLDKFLEEI  261 (309)
Q Consensus       212 Ii~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------------~~~~~~f~~~~  261 (309)
                      |++..++|+..+  ...+++.++++|+|||  .+++.....                            ..+.+++.+.+
T Consensus       265 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll  342 (368)
T 3reo_A          265 IFIKWICHDWSDEHCLKLLKNCYAALPDHG--KVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALA  342 (368)
T ss_dssp             EEEESCGGGBCHHHHHHHHHHHHHHSCTTC--EEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHH
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCC--EEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHH
Confidence            999999986544  4578999999999999  666654221                            12355677888


Q ss_pred             HhCCCeEEEEec
Q 021691          262 EGNHLHFSIIEN  273 (309)
Q Consensus       262 ~~~G~~~~~~~~  273 (309)
                      +++||+...+..
T Consensus       343 ~~AGF~~v~~~~  354 (368)
T 3reo_A          343 MASGFRGFKVAS  354 (368)
T ss_dssp             HHTTCCEEEEEE
T ss_pred             HHCCCeeeEEEE
Confidence            899998766544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.22  E-value=7.5e-12  Score=108.97  Aligned_cols=107  Identities=17%  Similarity=0.130  Sum_probs=81.0

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC--CCCCCC--
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD--DFPYIV--  206 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~--~~~~~~--  206 (309)
                      ..++++|||+|||+|..++.+++.++ +.+|+++|.++.+++.+++++..++..   .++.+...+..+.  ..+...  
T Consensus        70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---~~i~~~~~d~~~~l~~l~~~~~~  146 (232)
T 3cbg_A           70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA---EKISLRLGPALATLEQLTQGKPL  146 (232)
T ss_dssp             HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHHHHHHHHHTSSSC
T ss_pred             hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcEEEEEcCHHHHHHHHHhcCCC
Confidence            34678999999999999999998776 579999999999999999999988763   3566655543211  011112  


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ++||+|++...   ......+++.+.++|+|||  .+++.
T Consensus       147 ~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG--~lv~~  181 (232)
T 3cbg_A          147 PEFDLIFIDAD---KRNYPRYYEIGLNLLRRGG--LMVID  181 (232)
T ss_dssp             CCEEEEEECSC---GGGHHHHHHHHHHTEEEEE--EEEEE
T ss_pred             CCcCEEEECCC---HHHHHHHHHHHHHHcCCCe--EEEEe
Confidence            68999998432   5677889999999999999  44443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.22  E-value=8e-11  Score=108.70  Aligned_cols=121  Identities=12%  Similarity=0.124  Sum_probs=91.4

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+++..+..+|+++|. +.+++.+++      .    .++++...|... .  .+  .||+|
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~----~~v~~~~~d~~~-~--~p--~~D~v  250 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S----NNLTYVGGDMFT-S--IP--NADAV  250 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B----TTEEEEECCTTT-C--CC--CCSEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C----CCcEEEeccccC-C--CC--CccEE
Confidence            3568999999999999999999888889999999 999887653      1    236776666543 2  22  39999


Q ss_pred             EEcCCCCCcccHH--HHHHHHHHHHhc---CCCeEEEEEeecC--------------------------CchHHHHHHHH
Q 021691          213 VASDCTFFKEFHK--DLARIIKFLLKK---VGPSEALFFSPKR--------------------------GDSLDKFLEEI  261 (309)
Q Consensus       213 i~~d~ly~~~~~~--~ll~~l~~lLk~---~G~~~~ii~~~~r--------------------------~~~~~~f~~~~  261 (309)
                      ++..++|+..+..  .+++.++++|+|   ||  .+++.....                          ..+.+++.+.+
T Consensus       251 ~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG--~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll  328 (352)
T 1fp2_A          251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRG--KVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLF  328 (352)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCC--EEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHH
T ss_pred             EeehhhccCCHHHHHHHHHHHHHhCCCCCCCc--EEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHH
Confidence            9999999877766  999999999999   88  566554221                          12345667777


Q ss_pred             HhCCCeEEEE
Q 021691          262 EGNHLHFSII  271 (309)
Q Consensus       262 ~~~G~~~~~~  271 (309)
                      +++||....+
T Consensus       329 ~~aGf~~~~~  338 (352)
T 1fp2_A          329 IEAGFQHYKI  338 (352)
T ss_dssp             HHTTCCEEEE
T ss_pred             HHCCCCeeEE
Confidence            7888876544

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.20  E-value=5.6e-11  Score=106.31  Aligned_cols=132  Identities=16%  Similarity=0.143  Sum_probs=89.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      .+++|||||||+|.++..+++..+..+|+++|+++.+++.+++++...+......++++...|.... .....++||+|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-l~~~~~~fD~Ii  153 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-IAKSENQYDVIM  153 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-HHTCCSCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-HhhCCCCeeEEE
Confidence            5789999999999999998876567899999999999999999876521111234566665543211 111246899999


Q ss_pred             EcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeEE
Q 021691          214 ASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       214 ~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~~  269 (309)
                      + |+.+...     ....+++.++++|+++|  .+++....   .........+.+++..-.+.
T Consensus       154 ~-d~~~~~~~~~~l~~~~~~~~~~~~L~pgG--~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~  214 (275)
T 1iy9_A          154 V-DSTEPVGPAVNLFTKGFYAGIAKALKEDG--IFVAQTDNPWFTPELITNVQRDVKEIFPITK  214 (275)
T ss_dssp             E-SCSSCCSCCCCCSTTHHHHHHHHHEEEEE--EEEEECCCTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred             E-CCCCCCCcchhhhHHHHHHHHHHhcCCCc--EEEEEcCCccccHHHHHHHHHHHHHhCCCeE
Confidence            9 5544221     12578999999999999  44443321   12345566677777743443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.19  E-value=1.2e-10  Score=108.48  Aligned_cols=98  Identities=12%  Similarity=0.083  Sum_probs=78.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..+++..+..+++++|. +.+++.+++      .    .++++...|...   +.+  .||+
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~----~~v~~~~~d~~~---~~~--~~D~  270 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L----SGIEHVGGDMFA---SVP--QGDA  270 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C----TTEEEEECCTTT---CCC--CEEE
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c----CCCEEEeCCccc---CCC--CCCE
Confidence            44678999999999999999999888889999999 988876653      1    246777666543   222  2999


Q ss_pred             EEEcCCCCCcccHH--HHHHHHHHHHhcCCCeEEEEEe
Q 021691          212 IVASDCTFFKEFHK--DLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       212 Ii~~d~ly~~~~~~--~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |++..++|+..+..  .+++.++++|+|||  .+++..
T Consensus       271 v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG--~l~i~e  306 (372)
T 1fp1_D          271 MILKAVCHNWSDEKCIEFLSNCHKALSPNG--KVIIVE  306 (372)
T ss_dssp             EEEESSGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEE
T ss_pred             EEEecccccCCHHHHHHHHHHHHHhcCCCC--EEEEEE
Confidence            99999999877766  99999999999999  555553

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.19  E-value=5.5e-11  Score=102.58  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=80.0

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-----CcEEEEEcCCHHHHHHHHHHHHhccCC-CCCCceEEEEeeCCCCCCC-
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-----ALEVVISDGNPQVVDYIQRNVDANSGA-FGGTTVKSMTLHWNQDDFP-  203 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-----~~~V~~tD~~~~~l~~~~~n~~~n~~~-~~~~~v~~~~l~w~~~~~~-  203 (309)
                      .+.++.+|||+|||+|..+..+++..+     ..+|+++|.++.+++.+++++..++.. ....++.+...|....... 
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence            355789999999999999999988753     359999999999999999999887620 0013566666655432100 


Q ss_pred             -CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          204 -YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       204 -~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                       ...++||+|++..++++      +++.+.++|+++|  .+++...
T Consensus       157 ~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG--~lv~~~~  194 (227)
T 2pbf_A          157 KKELGLFDAIHVGASASE------LPEILVDLLAENG--KLIIPIE  194 (227)
T ss_dssp             HHHHCCEEEEEECSBBSS------CCHHHHHHEEEEE--EEEEEEE
T ss_pred             CccCCCcCEEEECCchHH------HHHHHHHhcCCCc--EEEEEEc
Confidence             12367999999877654      3578899999999  5555443

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.18  E-value=4e-11  Score=110.15  Aligned_cols=108  Identities=13%  Similarity=0.036  Sum_probs=78.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc--cCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN--SGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n--~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .+++|||||||+|..+..+++..+..+|+++|+++.+++.+++++...  ++.  ..++++...|+.........++||+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~--~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE--DPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG--STTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC--CCcEEEEECCHHHHHHhccCCCccE
Confidence            568999999999999999988766789999999999999999998753  331  2457776665432111112468999


Q ss_pred             EEEcCC--CCCccc--HHHHHHHHHHHHhcCCCeEEEE
Q 021691          212 IVASDC--TFFKEF--HKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       212 Ii~~d~--ly~~~~--~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      |++...  .+....  ...+++.+.++|++||  .+++
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG--~lv~  233 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGG--VVCT  233 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEE--EEEE
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCc--EEEE
Confidence            998322  222221  4789999999999999  4444

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.18  E-value=4.6e-11  Score=107.26  Aligned_cols=132  Identities=14%  Similarity=0.087  Sum_probs=88.6

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++++|||||||+|..+..+++..+..+|+++|+++.+++.+++++..++......++++...|..... ....++||+|+
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l-~~~~~~fD~Ii  156 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL-ENVTNTYDVII  156 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH-HHCCSCEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHH-HhCCCCceEEE
Confidence            56899999999999999988876678999999999999999998765421111245666655432211 11246899999


Q ss_pred             EcC--CCCCcccH--HHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeE
Q 021691          214 ASD--CTFFKEFH--KDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       214 ~~d--~ly~~~~~--~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~  268 (309)
                      +..  +.......  ..+++.++++|+|+|  .+++....   .......+.+.+++..-.+
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG--~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v  216 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNG--YCVAQCESLWIHVGTIKNMIGYAKKLFKKV  216 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEE--EEEEECCCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCc--EEEEECCCcccCHHHHHHHHHHHHHHCCce
Confidence            932  22112222  689999999999999  45444322   2234556677777763333

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.18  E-value=2.5e-10  Score=106.10  Aligned_cols=124  Identities=15%  Similarity=0.031  Sum_probs=93.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||+|||+|..+..+++.++..+++++|. +.+++.+++          ..++++...|... .  .+..  |+
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~-~--~p~~--D~  262 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----------FPGVTHVGGDMFK-E--VPSG--DT  262 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTT-C--CCCC--SE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----------cCCeEEEeCCcCC-C--CCCC--CE
Confidence            44578999999999999999999988889999998 888776653          1357777777654 2  2222  99


Q ss_pred             EEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------------CchHHHHHHHH
Q 021691          212 IVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR----------------------------GDSLDKFLEEI  261 (309)
Q Consensus       212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------------~~~~~~f~~~~  261 (309)
                      |++..++|+.  +....+++.+++.|+|||  .+++.....                            ..+.+++.+.+
T Consensus       263 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG--~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll  340 (364)
T 3p9c_A          263 ILMKWILHDWSDQHCATLLKNCYDALPAHG--KVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALA  340 (364)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTTC--EEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHH
T ss_pred             EEehHHhccCCHHHHHHHHHHHHHHcCCCC--EEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHH
Confidence            9999999865  445689999999999999  666654221                            12345677788


Q ss_pred             HhCCCeEEEEec
Q 021691          262 EGNHLHFSIIEN  273 (309)
Q Consensus       262 ~~~G~~~~~~~~  273 (309)
                      +++||+...+..
T Consensus       341 ~~AGF~~v~~~~  352 (364)
T 3p9c_A          341 RGAGFTGVKSTY  352 (364)
T ss_dssp             HHTTCCEEEEEE
T ss_pred             HHCCCceEEEEE
Confidence            888888765543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.18  E-value=5.5e-11  Score=108.06  Aligned_cols=128  Identities=13%  Similarity=0.004  Sum_probs=86.3

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      .+|||||||+|.++..+++..+..+|+++|+++.+++.+++++..+.    ..++++...|..........++||+|++ 
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~----~~rv~v~~~Da~~~l~~~~~~~fDvIi~-  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR----APRVKIRVDDARMVAESFTPASRDVIIR-  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC----TTTEEEEESCHHHHHHTCCTTCEEEEEE-
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC----CCceEEEECcHHHHHhhccCCCCCEEEE-
Confidence            39999999999999999997777899999999999999999875432    2456666554322111122468999998 


Q ss_pred             CCCCC---ccc--HHHHHHHHHHHHhcCCCeEEEEEeecC--CchHHHHHHHHHhCCCeEEE
Q 021691          216 DCTFF---KEF--HKDLARIIKFLLKKVGPSEALFFSPKR--GDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       216 d~ly~---~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r--~~~~~~f~~~~~~~G~~~~~  270 (309)
                      |+...   ...  ...+++.++++|+++|  .+++.....  ......+.+.+++..-.+..
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgG--vlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~  225 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGG--LYVANCGDHSDLRGAKSELAGMMEVFEHVAV  225 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEE--EEEEEEEECTTCHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCc--EEEEEecCCcchHHHHHHHHHHHHHCCceEE
Confidence            43222   111  2688999999999999  444433222  12344566666665434433

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.17  E-value=1.9e-11  Score=120.15  Aligned_cols=102  Identities=14%  Similarity=0.102  Sum_probs=76.1

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|+++..+|+.  +++|+|+|.++.+|+.++..+..++.    .++.+...+..+.......++||+|
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~fD~v  138 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPD----FAAEFRVGRIEEVIAALEEGEFDLA  138 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTT----SEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCC----CceEEEECCHHHHhhhccCCCccEE
Confidence            35679999999999999999986  67999999999999999999887764    2455555543221112235689999


Q ss_pred             EEcCCCCCcccHHHH--HHHHHHHHhcCCC
Q 021691          213 VASDCTFFKEFHKDL--ARIIKFLLKKVGP  240 (309)
Q Consensus       213 i~~d~ly~~~~~~~l--l~~l~~lLk~~G~  240 (309)
                      +|..+++|..+...+  +..+.+.|++++.
T Consensus       139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~  168 (569)
T 4azs_A          139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQ  168 (569)
T ss_dssp             EEESCHHHHHHHHCHHHHHHHHHHHHHHSS
T ss_pred             EECcchhcCCCHHHHHHHHHHHHHhccccc
Confidence            999999997665433  2345556778774

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.17  E-value=1.2e-10  Score=100.69  Aligned_cols=106  Identities=11%  Similarity=0.127  Sum_probs=77.2

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCC------cEEEEEcCCHHHHHHHHHHHHhccCC-CCCCceEEEEeeCCCCCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEA------LEVVISDGNPQVVDYIQRNVDANSGA-FGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~------~~V~~tD~~~~~l~~~~~n~~~n~~~-~~~~~v~~~~l~w~~~~~~  203 (309)
                      ...++.+|||+|||+|..+..+++..+.      .+|+++|.++.+++.+++++..++.. ....++.+...|.... . 
T Consensus        81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~-  158 (227)
T 1r18_A           81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG-Y-  158 (227)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-C-
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC-C-
Confidence            3457889999999999999998886553      59999999999999999999876510 0002456666555431 1 


Q ss_pred             CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ....+||+|++..++++.      .+.+.++|++||  .+++.
T Consensus       159 ~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG--~lvi~  193 (227)
T 1r18_A          159 PPNAPYNAIHVGAAAPDT------PTELINQLASGG--RLIVP  193 (227)
T ss_dssp             GGGCSEEEEEECSCBSSC------CHHHHHTEEEEE--EEEEE
T ss_pred             CcCCCccEEEECCchHHH------HHHHHHHhcCCC--EEEEE
Confidence            112689999998777653      378899999999  44443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.16  E-value=6.1e-11  Score=108.41  Aligned_cols=131  Identities=13%  Similarity=0.077  Sum_probs=89.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh--ccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA--NSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~--n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .+++|||+|||+|..+..+++..+..+|+++|+++.+++.+++|+..  ++..  ..++++...|+.... ....++||+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~--~~~v~~~~~D~~~~l-~~~~~~fDv  192 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE--DKRVNVFIEDASKFL-ENVTNTYDV  192 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG--STTEEEEESCHHHHH-HHCCSCEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC--CCcEEEEEccHHHHH-hhcCCCceE
Confidence            56899999999999999988876678999999999999999999765  3331  245666665543211 112468999


Q ss_pred             EEEcCC--CCCcccH--HHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeEE
Q 021691          212 IVASDC--TFFKEFH--KDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       212 Ii~~d~--ly~~~~~--~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~~  269 (309)
                      |++...  .......  ..+++.++++|+|||  .+++....   .......+.+.+++..-.+.
T Consensus       193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG--~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~  255 (321)
T 2pt6_A          193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNG--YCVAQCESLWIHVGTIKNMIGYAKKLFKKVE  255 (321)
T ss_dssp             EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEE--EEEEEECCTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred             EEECCcCCCCcchhhhHHHHHHHHHHhcCCCc--EEEEEcCCcccCHHHHHHHHHHHHHHCCCeE
Confidence            998432  1111111  788999999999999  44443322   22345667777877754443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.16  E-value=1.1e-10  Score=111.39  Aligned_cols=144  Identities=14%  Similarity=0.100  Sum_probs=97.6

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      +++..++..+.    ..+|.+|||+|||+|..++.+|+..+ ..+|+++|+++.+++.+++|++.+++.    ++.+...
T Consensus        92 ~ss~l~~~~L~----~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~----nv~v~~~  163 (456)
T 3m4x_A           92 PSAMIVGTAAA----AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS----NAIVTNH  163 (456)
T ss_dssp             TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS----SEEEECC
T ss_pred             HHHHHHHHHcC----CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEeC
Confidence            45566666553    34689999999999999999988765 469999999999999999999999873    4555443


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCc----------------------ccHHHHHHHHHHHHhcCCCeEEEEEeec--CC
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFK----------------------EFHKDLARIIKFLLKKVGPSEALFFSPK--RG  251 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~----------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~--r~  251 (309)
                      |..... ....++||+|++..+....                      .....++..+.++|+|||  .++++++.  ..
T Consensus       164 Da~~l~-~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG--~LvYsTCs~~~e  240 (456)
T 3m4x_A          164 APAELV-PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKG--QLIYSTCTFAPE  240 (456)
T ss_dssp             CHHHHH-HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEE--EEEEEESCCCGG
T ss_pred             CHHHhh-hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEEEeecccc
Confidence            321110 0124689999984332111                      112367889999999999  56665543  23


Q ss_pred             chHHHHHHHHHhCCCeEEEE
Q 021691          252 DSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       252 ~~~~~f~~~~~~~G~~~~~~  271 (309)
                      +..+.....+++++|.+..+
T Consensus       241 Ene~vv~~~l~~~~~~l~~~  260 (456)
T 3m4x_A          241 ENEEIISWLVENYPVTIEEI  260 (456)
T ss_dssp             GTHHHHHHHHHHSSEEEECC
T ss_pred             cCHHHHHHHHHhCCCEEEec
Confidence            44445556667777655443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.16  E-value=6e-11  Score=107.23  Aligned_cols=130  Identities=13%  Similarity=0.073  Sum_probs=87.1

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh--ccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA--NSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~--n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .+++|||||||+|..+..+++..+..+|+++|+++.+++.+++++..  ++..  ..++++...|.... .....++||+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~--~~~v~~~~~D~~~~-l~~~~~~fD~  166 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD--DPRAEIVIANGAEY-VRKFKNEFDV  166 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG--CTTEEEEESCHHHH-GGGCSSCEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC--CCceEEEECcHHHH-HhhCCCCceE
Confidence            46899999999999999988876678999999999999999999865  3321  24566665543211 1112467999


Q ss_pred             EEEcCCCCC-cc-----cHHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeEE
Q 021691          212 IVASDCTFF-KE-----FHKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       212 Ii~~d~ly~-~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~~  269 (309)
                      |++ |+... ..     ....+++.++++|+|||  .+++....   .........+.+++..-.+.
T Consensus       167 Ii~-d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG--~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~  230 (296)
T 1inl_A          167 III-DSTDPTAGQGGHLFTEEFYQACYDALKEDG--VFSAETEDPFYDIGWFKLAYRRISKVFPITR  230 (296)
T ss_dssp             EEE-EC----------CCSHHHHHHHHHHEEEEE--EEEEECCCTTTTHHHHHHHHHHHHHHCSEEE
T ss_pred             EEE-cCCCcccCchhhhhHHHHHHHHHHhcCCCc--EEEEEccCcccCHHHHHHHHHHHHHHCCceE
Confidence            998 33321 11     22678999999999999  44444322   12344566666776643343

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.15  E-value=7.7e-11  Score=112.53  Aligned_cols=142  Identities=13%  Similarity=0.073  Sum_probs=95.0

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      +++..++..+.    ..+|.+|||+|||+|..++.+|+..+. .+|+++|+++.+++.+++|++.+++.     +.+...
T Consensus        88 ~ss~l~a~~L~----~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-----v~~~~~  158 (464)
T 3m6w_A           88 PSAQAVGVLLD----PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-----LAVTQA  158 (464)
T ss_dssp             TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-----CEEECS
T ss_pred             HHHHHHHHhcC----cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-----EEEEEC
Confidence            44555666552    347899999999999999999987654 69999999999999999999999872     444443


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCC-------cc----------------cHHHHHHHHHHHHhcCCCeEEEEEeec--C
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFF-------KE----------------FHKDLARIIKFLLKKVGPSEALFFSPK--R  250 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~-------~~----------------~~~~ll~~l~~lLk~~G~~~~ii~~~~--r  250 (309)
                      |..... ....++||+|++ |+.+.       ..                ....+++.+.++|+|||  .++++++.  .
T Consensus       159 Da~~l~-~~~~~~FD~Il~-D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG--~LvysTCs~~~  234 (464)
T 3m6w_A          159 PPRALA-EAFGTYFHRVLL-DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGG--VLVYSTCTFAP  234 (464)
T ss_dssp             CHHHHH-HHHCSCEEEEEE-ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEE--EEEEEESCCCG
T ss_pred             CHHHhh-hhccccCCEEEE-CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEEeccCch
Confidence            321110 012468999997 32221       11                12678899999999999  56665443  2


Q ss_pred             CchHHHHHHHHHhC-CCeEEEE
Q 021691          251 GDSLDKFLEEIEGN-HLHFSII  271 (309)
Q Consensus       251 ~~~~~~f~~~~~~~-G~~~~~~  271 (309)
                      .+..+.....++++ +|.+..+
T Consensus       235 eEne~vv~~~l~~~~~~~l~~~  256 (464)
T 3m6w_A          235 EENEGVVAHFLKAHPEFRLEDA  256 (464)
T ss_dssp             GGTHHHHHHHHHHCTTEEEECC
T ss_pred             hcCHHHHHHHHHHCCCcEEEec
Confidence            33334444445555 5655443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.14  E-value=2.5e-10  Score=98.38  Aligned_cols=106  Identities=16%  Similarity=0.155  Sum_probs=78.2

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCC-CCCceEEEEeeCCCCCCCCCCCCc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAF-GGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ..++.+|||+|||+|..+..+++..+. .+|+++|+++.+++.+++++..++... ...++.+...|....  ....++|
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~f  152 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG--YAEEAPY  152 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC--CGGGCCE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC--cccCCCc
Confidence            457889999999999999999887643 599999999999999999998865310 013466666655422  1224679


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |+|++..++.+      +++.+.++|+|||  .+++..
T Consensus       153 D~i~~~~~~~~------~~~~~~~~LkpgG--~lv~~~  182 (226)
T 1i1n_A          153 DAIHVGAAAPV------VPQALIDQLKPGG--RLILPV  182 (226)
T ss_dssp             EEEEECSBBSS------CCHHHHHTEEEEE--EEEEEE
T ss_pred             CEEEECCchHH------HHHHHHHhcCCCc--EEEEEE
Confidence            99999776643      3468889999999  455443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.14  E-value=9.1e-11  Score=104.81  Aligned_cols=105  Identities=19%  Similarity=0.254  Sum_probs=75.9

Q ss_pred             CCCeEEEeCCCCCh----hhHHHHHhcC----CcEEEEEcCCHHHHHHHHHHHHhc----cC-------------C--CC
Q 021691          134 RSKRVIELGSGYGL----AGLVIAATTE----ALEVVISDGNPQVVDYIQRNVDAN----SG-------------A--FG  186 (309)
Q Consensus       134 ~g~~VLELG~GtG~----~~l~la~~~~----~~~V~~tD~~~~~l~~~~~n~~~n----~~-------------~--~~  186 (309)
                      ++.+|+|+|||||.    +++.+++..+    ..+|+|+|+|+.||+.|++++-..    ++             .  .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999997    6666776644    358999999999999999875110    00             0  00


Q ss_pred             --------CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC--cccHHHHHHHHHHHHhcCC
Q 021691          187 --------GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF--KEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       187 --------~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G  239 (309)
                              ...|.+...++.+...+ ..++||+|+|.+++.+  .+....+++.+.+.|+|||
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG  246 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDG  246 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCc
Confidence                    12577778877653222 1468999999987644  3445889999999999999

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.14  E-value=4e-10  Score=99.66  Aligned_cols=113  Identities=14%  Similarity=0.142  Sum_probs=81.5

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      +-...+.+++.... ..++.+|||+|||+|..+..+++..++.+|+++|.++.+++.++++.         .++.+...+
T Consensus        69 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d  138 (269)
T 1p91_A           69 PLRDAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVAS  138 (269)
T ss_dssp             HHHHHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECC
T ss_pred             HHHHHHHHHHHHhc-CCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcc
Confidence            44445555554421 13678999999999999999998776779999999999999998763         123455555


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      +..  .+...++||+|++..+.       ..++.+.++|+|||  .+++..+..
T Consensus       139 ~~~--~~~~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG--~l~~~~~~~  181 (269)
T 1p91_A          139 SHR--LPFSDTSMDAIIRIYAP-------CKAEELARVVKPGG--WVITATPGP  181 (269)
T ss_dssp             TTS--CSBCTTCEEEEEEESCC-------CCHHHHHHHEEEEE--EEEEEEECT
T ss_pred             hhh--CCCCCCceeEEEEeCCh-------hhHHHHHHhcCCCc--EEEEEEcCH
Confidence            432  23345789999997653       24789999999999  666666544

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.14  E-value=3e-10  Score=105.08  Aligned_cols=122  Identities=12%  Similarity=0.091  Sum_probs=91.3

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+++..+..+++++|. +.+++.+++      .    .++++...|...   +.  ..||+|
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~----~~v~~~~~d~~~---~~--~~~D~v  255 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N----ENLNFVGGDMFK---SI--PSADAV  255 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C----SSEEEEECCTTT---CC--CCCSEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C----CCcEEEeCccCC---CC--CCceEE
Confidence            3568999999999999999999988889999998 788866543      1    236777766543   22  249999


Q ss_pred             EEcCCCCCcccHH--HHHHHHHHHHhc---CCCeEEEEEeecC---------------------------CchHHHHHHH
Q 021691          213 VASDCTFFKEFHK--DLARIIKFLLKK---VGPSEALFFSPKR---------------------------GDSLDKFLEE  260 (309)
Q Consensus       213 i~~d~ly~~~~~~--~ll~~l~~lLk~---~G~~~~ii~~~~r---------------------------~~~~~~f~~~  260 (309)
                      ++..++|+..+..  .+++.++++|+|   ||  .+++.....                           ..+.+++.+.
T Consensus       256 ~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG--~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l  333 (358)
T 1zg3_A          256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDG--KVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKL  333 (358)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHTGGGGGGC--EEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHH
T ss_pred             EEcccccCCCHHHHHHHHHHHHHhCCCCCCCc--EEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHH
Confidence            9999999877755  999999999999   98  566554221                           1144566777


Q ss_pred             HHhCCCeEEEEe
Q 021691          261 IEGNHLHFSIIE  272 (309)
Q Consensus       261 ~~~~G~~~~~~~  272 (309)
                      ++++||....+.
T Consensus       334 l~~aGf~~~~~~  345 (358)
T 1zg3_A          334 IYDAGFSSYKIT  345 (358)
T ss_dssp             HHHTTCCEEEEE
T ss_pred             HHHcCCCeeEEE
Confidence            788888765543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.14  E-value=4.4e-10  Score=97.67  Aligned_cols=111  Identities=14%  Similarity=-0.013  Sum_probs=79.9

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+...+...   .+..+|||||||+|.+++.++   ++.+|+++|+++.+++.+++++..++.     ...+...|...
T Consensus        94 d~fY~~i~~~---~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~-----~~~~~v~D~~~  162 (253)
T 3frh_A           94 DTLYDFIFSA---ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDW-----DFTFALQDVLC  162 (253)
T ss_dssp             HHHHHHHTSS---CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTC-----EEEEEECCTTT
T ss_pred             HHHHHHHhcC---CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCC-----CceEEEeeccc
Confidence            3344445544   457799999999999998865   688999999999999999999998875     34555454332


Q ss_pred             CCCCCCCCCccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                         ..+.++||+|++..++++.+.  ...++ .+...|++++   +++..+
T Consensus       163 ---~~~~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~---vvVsfP  206 (253)
T 3frh_A          163 ---APPAEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPR---MAVSFP  206 (253)
T ss_dssp             ---SCCCCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSE---EEEEEE
T ss_pred             ---CCCCCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCC---EEEEcC
Confidence               234568999999988877432  23344 5666777776   555555

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.13  E-value=1.1e-10  Score=106.42  Aligned_cols=132  Identities=14%  Similarity=0.144  Sum_probs=88.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh-ccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA-NSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+++|||||||+|..+..+++..+..+|+++|+++.+++.+++++.. |+-.....++++...|.... .....++||+|
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~-l~~~~~~fD~I  155 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-LERTEERYDVV  155 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-HHHCCCCEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH-HHhcCCCccEE
Confidence            56899999999999999988876678999999999999999998764 22101124566665543221 11124689999


Q ss_pred             EEcCCCCC-c-cc-----HHHHHHHHHHHHhcCCCeEEEEEe--e--cCCchHHHHHHHHHhCCCeE
Q 021691          213 VASDCTFF-K-EF-----HKDLARIIKFLLKKVGPSEALFFS--P--KRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       213 i~~d~ly~-~-~~-----~~~ll~~l~~lLk~~G~~~~ii~~--~--~r~~~~~~f~~~~~~~G~~~  268 (309)
                      ++....+. . ..     ...+++.++++|+|||  .+++..  +  ..........+.+++..-.+
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG--~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v  220 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGG--VMGMQTGMILLTHHRVHPVVHRTVREAFRYV  220 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEE--EEEEEEEEECC---CHHHHHHHHHHTTCSEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCc--EEEEEccCccccCHHHHHHHHHHHHHHCCce
Confidence            99533322 0 11     3788999999999999  444432  2  12345566777777764444

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.10  E-value=1.7e-10  Score=103.37  Aligned_cols=124  Identities=19%  Similarity=0.136  Sum_probs=82.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC-------CCCceEEEEeeCCCCCCCCCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF-------GGTTVKSMTLHWNQDDFPYIV  206 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~-------~~~~v~~~~l~w~~~~~~~~~  206 (309)
                      .+++|||||||+|..+..+++. +..+|+++|+++.+++.+++++ ......       ...++++...|.... ... .
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~-l~~-~  150 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF-IKN-N  150 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH-HHH-C
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH-hcc-c
Confidence            5689999999999999998887 7789999999999999999987 321011       124566655442211 011 4


Q ss_pred             CCccEEEEcCCCCCc---cc--HHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhC
Q 021691          207 DTFDVIVASDCTFFK---EF--HKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGN  264 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~---~~--~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~  264 (309)
                      ++||+|++ |.....   ..  ...+++.++++|+|||  .+++....   .......+.+.+++.
T Consensus       151 ~~fD~Ii~-d~~~~~~~~~~l~~~~~l~~~~~~L~pgG--~lv~~~~~~~~~~~~~~~~~~~l~~~  213 (281)
T 1mjf_A          151 RGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPG--IYVTQAGSVYLFTDELISAYKEMKKV  213 (281)
T ss_dssp             CCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEE--EEEEEEEETTTSHHHHHHHHHHHHHH
T ss_pred             CCeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhcCCCc--EEEEEcCCcccCHHHHHHHHHHHHHH
Confidence            67999998 443321   11  3678999999999999  44443322   223344555556555

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.10  E-value=3.3e-10  Score=95.75  Aligned_cols=128  Identities=17%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      .|+..|.+......-+.+|.+|||||||+|..+..+++.  +.+|+++|+++..           ..    ..+.+...|
T Consensus         8 Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~----~~v~~~~~D   70 (191)
T 3dou_A            8 RAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EI----AGVRFIRCD   70 (191)
T ss_dssp             HHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CC----TTCEEEECC
T ss_pred             cHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cC----CCeEEEEcc
Confidence            356667766655544557899999999999999998886  6799999998741           11    246666666


Q ss_pred             CCCCCCCC-----CC----CCccEEEEcCCCCCc-----------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHH
Q 021691          197 WNQDDFPY-----IV----DTFDVIVASDCTFFK-----------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDK  256 (309)
Q Consensus       197 w~~~~~~~-----~~----~~fDvIi~~d~ly~~-----------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~  256 (309)
                      ..+.....     ..    ++||+|++.......           .....+++.+.++|+|||  .++ +...+......
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG--~lv-~k~~~~~~~~~  147 (191)
T 3dou_A           71 IFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGG--NVL-LKQFQGDMTND  147 (191)
T ss_dssp             TTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEE--EEE-EEEECSTHHHH
T ss_pred             ccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCC--EEE-EEEcCCCCHHH
Confidence            55432100     01    489999995432211           123567888899999999  333 33344455667


Q ss_pred             HHHHHHhC
Q 021691          257 FLEEIEGN  264 (309)
Q Consensus       257 f~~~~~~~  264 (309)
                      +...++..
T Consensus       148 ~~~~l~~~  155 (191)
T 3dou_A          148 FIAIWRKN  155 (191)
T ss_dssp             HHHHHGGG
T ss_pred             HHHHHHHh
Confidence            87777664

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.10  E-value=2.8e-10  Score=108.03  Aligned_cols=141  Identities=11%  Similarity=-0.002  Sum_probs=94.3

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      +++..++..+    ...+|.+|||+|||+|..+..+++..+..+|+++|+++.+++.+++|+..++..     +.+...|
T Consensus       233 ~~s~~~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~-----~~~~~~D  303 (429)
T 1sqg_A          233 ASAQGCMTWL----APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-----ATVKQGD  303 (429)
T ss_dssp             HHHHTHHHHH----CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-----CEEEECC
T ss_pred             HHHHHHHHHc----CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC-----eEEEeCc
Confidence            3455555554    235788999999999999999999876679999999999999999999998762     4555554


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCC------ccc----------------HHHHHHHHHHHHhcCCCeEEEEEeec--CCc
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFF------KEF----------------HKDLARIIKFLLKKVGPSEALFFSPK--RGD  252 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~------~~~----------------~~~ll~~l~~lLk~~G~~~~ii~~~~--r~~  252 (309)
                      ..........++||+|++..+...      ..+                ...+++.+.++|+|||  .+++.++.  ..+
T Consensus       304 ~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG--~lvystcs~~~~e  381 (429)
T 1sqg_A          304 GRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGG--TLVYATCSVLPEE  381 (429)
T ss_dssp             TTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEE--EEEEEESCCCGGG
T ss_pred             hhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCC--EEEEEECCCChhh
Confidence            432211012368999998332211      111                1478899999999999  56665533  223


Q ss_pred             hHHHHHHHHHhC-CCeE
Q 021691          253 SLDKFLEEIEGN-HLHF  268 (309)
Q Consensus       253 ~~~~f~~~~~~~-G~~~  268 (309)
                      ........++++ +|..
T Consensus       382 ne~~v~~~l~~~~~~~~  398 (429)
T 1sqg_A          382 NSLQIKAFLQRTADAEL  398 (429)
T ss_dssp             THHHHHHHHHHCTTCEE
T ss_pred             HHHHHHHHHHhCCCCEE
Confidence            333444445554 4554

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.09  E-value=7.6e-10  Score=106.35  Aligned_cols=147  Identities=13%  Similarity=0.073  Sum_probs=95.7

Q ss_pred             CCceeeccc-HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCC
Q 021691          110 TGLVCHWPS-EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGG  187 (309)
Q Consensus       110 tG~~~~W~s-a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~  187 (309)
                      .|...+=+. +..++..+..  ...+|.+|||+|||+|..++.+|+..+ ..+|+++|+++.+++.+++|++.+++.   
T Consensus        94 ~G~~~~Qd~~s~l~~~~L~~--~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~---  168 (479)
T 2frx_A           94 SGLFYIQEASSMLPVAALFA--DGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS---  168 (479)
T ss_dssp             TTSEEECCHHHHHHHHHHTT--TTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC---
T ss_pred             CcEEEEECHHHHHHHHHhCc--ccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---
Confidence            466534443 4444554432  122688999999999999999998765 479999999999999999999998873   


Q ss_pred             CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC-------c---------------ccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF-------K---------------EFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~-------~---------------~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                       ++.+...|..... ....++||+|++..+...       +               .....+++.+.++|+|||  .+++
T Consensus       169 -nv~~~~~D~~~~~-~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG--~Lvy  244 (479)
T 2frx_A          169 -NVALTHFDGRVFG-AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGG--TLVY  244 (479)
T ss_dssp             -SEEEECCCSTTHH-HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEE--EEEE
T ss_pred             -cEEEEeCCHHHhh-hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCC--EEEE
Confidence             4665555433211 012468999998322211       0               012468889999999999  5666


Q ss_pred             Eeec--CCchHHHHHHHHHhCC
Q 021691          246 FSPK--RGDSLDKFLEEIEGNH  265 (309)
Q Consensus       246 ~~~~--r~~~~~~f~~~~~~~G  265 (309)
                      .++.  ..+..+.....+++.+
T Consensus       245 sTcs~~~~Ene~vv~~~l~~~~  266 (479)
T 2frx_A          245 STCTLNQEENEAVCLWLKETYP  266 (479)
T ss_dssp             EESCCSSTTTHHHHHHHHHHST
T ss_pred             ecccCCcccCHHHHHHHHHHCC
Confidence            5542  2333333344455554

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.08  E-value=9e-10  Score=101.42  Aligned_cols=125  Identities=13%  Similarity=0.050  Sum_probs=89.6

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCC-----cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEA-----LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~-----~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~  208 (309)
                      ++.+|||+|||+|.+.+.+++..+.     .+|+|+|+++.+++.++.|+..++.     .+.+...|.-.   .....+
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-----~~~i~~~D~l~---~~~~~~  201 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-----KMTLLHQDGLA---NLLVDP  201 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-----CCEEEESCTTS---CCCCCC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-----CceEEECCCCC---ccccCC
Confidence            5679999999999999988877543     6899999999999999999998876     23444444322   223468


Q ss_pred             ccEEEEcCCCCCccc------------------HHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCe
Q 021691          209 FDVIVASDCTFFKEF------------------HKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       209 fDvIi~~d~ly~~~~------------------~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~  267 (309)
                      ||+|+++.++.....                  ...++..+.++|+++|  .+++..+.   +......+.+.+.+.|+.
T Consensus       202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG--~~~~v~p~~~~~~~~~~~ir~~l~~~~~~  279 (344)
T 2f8l_A          202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGG--YLFFLVPDAMFGTSDFAKVDKFIKKNGHI  279 (344)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEE--EEEEEEEGGGGGSTTHHHHHHHHHHHEEE
T ss_pred             ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCC--EEEEEECchhcCCchHHHHHHHHHhCCeE
Confidence            999999877532211                  1257889999999999  55555543   234456777777777654


Q ss_pred             E
Q 021691          268 F  268 (309)
Q Consensus       268 ~  268 (309)
                      .
T Consensus       280 ~  280 (344)
T 2f8l_A          280 E  280 (344)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.07  E-value=2.3e-10  Score=106.75  Aligned_cols=97  Identities=23%  Similarity=0.116  Sum_probs=75.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc---------------cCCCCCCceEEEEeeCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN---------------SGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n---------------~~~~~~~~v~~~~l~w~  198 (309)
                      ++.+|||+|||+|..++.+|+..++.+|+++|+++++++.+++|++.|               ++.    ++.+...|..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~----~i~v~~~Da~  122 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK----TIVINHDDAN  122 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS----EEEEEESCHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC----ceEEEcCcHH
Confidence            688999999999999999999877788999999999999999999999               552    2555544332


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          199 QDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       199 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ... .....+||+|+. |+.+.   ...+++.+.++|+++|
T Consensus       123 ~~~-~~~~~~fD~I~l-DP~~~---~~~~l~~a~~~lk~gG  158 (378)
T 2dul_A          123 RLM-AERHRYFHFIDL-DPFGS---PMEFLDTALRSAKRRG  158 (378)
T ss_dssp             HHH-HHSTTCEEEEEE-CCSSC---CHHHHHHHHHHEEEEE
T ss_pred             HHH-HhccCCCCEEEe-CCCCC---HHHHHHHHHHhcCCCC
Confidence            111 011357999996 77543   3577888889999999

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.07  E-value=6.1e-10  Score=100.03  Aligned_cols=92  Identities=20%  Similarity=0.246  Sum_probs=68.5

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+++.+.......++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++..++..   .++++...|...
T Consensus        14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~D~~~   88 (285)
T 1zq9_A           14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVA---SKLQVLVGDVLK   88 (285)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTG---GGEEEEESCTTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCC---CceEEEEcceec
Confidence            334455555555667889999999999999999887  569999999999999999998765541   356676666543


Q ss_pred             CCCCCCCCCccEEEEcCCCCC
Q 021691          200 DDFPYIVDTFDVIVASDCTFF  220 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~  220 (309)
                      ...    ..||+|+++.+++.
T Consensus        89 ~~~----~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           89 TDL----PFFDTCVANLPYQI  105 (285)
T ss_dssp             SCC----CCCSEEEEECCGGG
T ss_pred             ccc----hhhcEEEEecCccc
Confidence            322    37999999655444

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.06  E-value=1.3e-10  Score=105.82  Aligned_cols=125  Identities=14%  Similarity=0.071  Sum_probs=80.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc--cCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN--SGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n--~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .+++|||||||+|..+..+++..+..+|+++|+++.+++.+++++...  ++  ...++++...|.... .....++||+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~--~~~rv~~~~~D~~~~-l~~~~~~fD~  184 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF--SHPKLDLFCGDGFEF-LKNHKNEFDV  184 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG--GCTTEEEECSCHHHH-HHHCTTCEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc--CCCCEEEEEChHHHH-HHhcCCCceE
Confidence            468999999999999999888766789999999999999999987653  22  124566655443211 0113468999


Q ss_pred             EEEcCCCCCc---cc-H-HHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhC
Q 021691          212 IVASDCTFFK---EF-H-KDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGN  264 (309)
Q Consensus       212 Ii~~d~ly~~---~~-~-~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~  264 (309)
                      |++ |.....   .. . ..+++.++++|+|+|  .+++....   .........+.+++.
T Consensus       185 Ii~-d~~~~~~~~~~l~t~~~l~~~~~~LkpgG--~lv~~~~~~~~~~~~~~~~~~~l~~v  242 (314)
T 2b2c_A          185 IIT-DSSDPVGPAESLFGQSYYELLRDALKEDG--ILSSQGESVWLHLPLIAHLVAFNRKI  242 (314)
T ss_dssp             EEE-CCC-------------HHHHHHHHEEEEE--EEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             EEE-cCCCCCCcchhhhHHHHHHHHHhhcCCCe--EEEEECCCcccCHHHHHHHHHHHHHH
Confidence            998 443221   11 1 678999999999999  44443311   122334445555554

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.05  E-value=1.6e-10  Score=101.04  Aligned_cols=99  Identities=12%  Similarity=0.024  Sum_probs=72.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHh----cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCCC-C
Q 021691          134 RSKRVIELGSGYGLAGLVIAAT----TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYIV-D  207 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~----~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~~-~  207 (309)
                      ++++|||||||+|..++.+|+.    .++.+|+++|+++.+++.++      +.   ..++++...|+.... .+... .
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~---~~~v~~~~gD~~~~~~l~~~~~~  151 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SD---MENITLHQGDCSDLTTFEHLREM  151 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GG---CTTEEEEECCSSCSGGGGGGSSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------cc---CCceEEEECcchhHHHHHhhccC
Confidence            5689999999999999999886    45689999999999988776      11   135777776665321 12222 3


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHH-HHhcCCCeEEEEE
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKF-LLKKVGPSEALFF  246 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~-lLk~~G~~~~ii~  246 (309)
                      +||+|++... +  .....++..+.+ +|++||  .+++.
T Consensus       152 ~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG--~lv~~  186 (236)
T 2bm8_A          152 AHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGD--YFIIE  186 (236)
T ss_dssp             CSSEEEEESS-C--SSHHHHHHHHHHHTCCTTC--EEEEC
T ss_pred             CCCEEEECCc-h--HhHHHHHHHHHHhhCCCCC--EEEEE
Confidence            7999998443 3  367888999997 999999  44443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.05  E-value=2.6e-10  Score=106.67  Aligned_cols=99  Identities=15%  Similarity=0.070  Sum_probs=74.8

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCc-eEEEEeeCCCCCCCCCCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTT-VKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~-v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      +|.+|||++||+|..|+.+|+.. ++.+|+++|+++.+++.+++|++.|++.   .+ +.+...|...........+||+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~---~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP---EDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC---GGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC---CceEEEEeCCHHHHHHHhhCCCCcE
Confidence            57899999999999999988875 3479999999999999999999999983   23 5555443211100012357999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      |++ |+ |.  ....++..+.++|+++|
T Consensus       129 V~l-DP-~g--~~~~~l~~a~~~Lk~gG  152 (392)
T 3axs_A          129 VDL-DP-FG--TPVPFIESVALSMKRGG  152 (392)
T ss_dssp             EEE-CC-SS--CCHHHHHHHHHHEEEEE
T ss_pred             EEE-CC-Cc--CHHHHHHHHHHHhCCCC
Confidence            998 66 43  23568888999999998

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.05  E-value=8.7e-10  Score=99.70  Aligned_cols=88  Identities=16%  Similarity=0.104  Sum_probs=63.1

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +.+.+.......++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.+++++..++.    .++.+...|.....
T Consensus        30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~----~~v~~~~~D~~~~~  103 (299)
T 2h1r_A           30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGY----NNLEVYEGDAIKTV  103 (299)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTC----CCEEC----CCSSC
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEECchhhCC
Confidence            3444444445567889999999999999998876  56999999999999999999987765    24555555443322


Q ss_pred             CCCCCCCccEEEEcCCCC
Q 021691          202 FPYIVDTFDVIVASDCTF  219 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly  219 (309)
                          ..+||+|+++.+.+
T Consensus       104 ----~~~~D~Vv~n~py~  117 (299)
T 2h1r_A          104 ----FPKFDVCTANIPYK  117 (299)
T ss_dssp             ----CCCCSEEEEECCGG
T ss_pred             ----cccCCEEEEcCCcc
Confidence                24799999954443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.02  E-value=2.5e-10  Score=103.55  Aligned_cols=109  Identities=17%  Similarity=0.139  Sum_probs=76.0

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh--ccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA--NSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~--n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..+++|||||||+|..+..+++..+..+|+++|+++.+++.+++++..  +++.  ..++++...|.... .+...++||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~--~~rv~v~~~Da~~~-l~~~~~~fD  170 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS--SSKLTLHVGDGFEF-MKQNQDAFD  170 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG--CTTEEEEESCHHHH-HHTCSSCEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC--CCcEEEEECcHHHH-HhhCCCCce
Confidence            356899999999999999988876668999999999999999999875  3331  23566655443211 112346899


Q ss_pred             EEEEcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          211 VIVASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       211 vIi~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +|++ |+.....     ....+++.++++|+|+|  .+++..
T Consensus       171 ~Ii~-d~~~~~~~~~~l~~~~~l~~~~~~LkpgG--~lv~~~  209 (304)
T 2o07_A          171 VIIT-DSSDPMGPAESLFKESYYQLMKTALKEDG--VLCCQG  209 (304)
T ss_dssp             EEEE-ECC-----------CHHHHHHHHHEEEEE--EEEEEE
T ss_pred             EEEE-CCCCCCCcchhhhHHHHHHHHHhccCCCe--EEEEec
Confidence            9998 4433211     23568999999999999  444433

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.02  E-value=3.4e-09  Score=99.10  Aligned_cols=123  Identities=13%  Similarity=0.090  Sum_probs=90.9

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC--------------------------------------cE
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA--------------------------------------LE  160 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~--------------------------------------~~  160 (309)
                      .+.|+..+.......++.+|||.|||+|.+.+.+|.....                                      .+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            4668888887777778899999999999999987765311                                      47


Q ss_pred             EEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC-----cccHHHHHHHHHHHH
Q 021691          161 VVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF-----KEFHKDLARIIKFLL  235 (309)
Q Consensus       161 V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~-----~~~~~~ll~~l~~lL  235 (309)
                      |+++|+++.+++.++.|+..+++.   ..+++...|..+..   ...+||+|+++.+ |.     ......+.+.+.+.|
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~---~~i~~~~~D~~~l~---~~~~~D~Iv~NPP-yg~rl~~~~~l~~ly~~lg~~l  332 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVD---EYIEFNVGDATQFK---SEDEFGFIITNPP-YGERLEDKDSVKQLYKELGYAF  332 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCG---GGEEEEECCGGGCC---CSCBSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCC---CceEEEECChhhcC---cCCCCcEEEECCC-CcCccCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999873   35777776655432   2357999999655 54     234566777788888


Q ss_pred             hcCCCeEEEEEee
Q 021691          236 KKVGPSEALFFSP  248 (309)
Q Consensus       236 k~~G~~~~ii~~~  248 (309)
                      ++-+...+.+++.
T Consensus       333 k~~~g~~~~iit~  345 (385)
T 3ldu_A          333 RKLKNWSYYLITS  345 (385)
T ss_dssp             HTSBSCEEEEEES
T ss_pred             hhCCCCEEEEEEC
Confidence            8722225555554

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.00  E-value=1.3e-09  Score=102.76  Aligned_cols=129  Identities=17%  Similarity=0.087  Sum_probs=88.9

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ..+++++.......++.+|||+|||+|.+++.+++.. +..+|+|+|+++.+++.+             .++.+...|..
T Consensus        25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------------~~~~~~~~D~~   91 (421)
T 2ih2_A           25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------------PWAEGILADFL   91 (421)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------------TTEEEEESCGG
T ss_pred             HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------------CCCcEEeCChh
Confidence            4566666665444456799999999999999988865 467999999999988766             13444444433


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCccc-----------------------------HHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          199 QDDFPYIVDTFDVIVASDCTFFKEF-----------------------------HKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       199 ~~~~~~~~~~fDvIi~~d~ly~~~~-----------------------------~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      ..   ...++||+|+++.+......                             ...+++.+.++|+++|  .+.+..+.
T Consensus        92 ~~---~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G--~~~~i~p~  166 (421)
T 2ih2_A           92 LW---EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGG--VLVFVVPA  166 (421)
T ss_dssp             GC---CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEE--EEEEEEEG
T ss_pred             hc---CccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCC--EEEEEECh
Confidence            22   12368999999766543221                             1256888999999999  55555544


Q ss_pred             C---CchHHHHHHHHHhCCC
Q 021691          250 R---GDSLDKFLEEIEGNHL  266 (309)
Q Consensus       250 r---~~~~~~f~~~~~~~G~  266 (309)
                      .   ....+.+.+.+.+.|+
T Consensus       167 ~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          167 TWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             GGGTCGGGHHHHHHHHHHSE
T ss_pred             HHhcCccHHHHHHHHHhcCC
Confidence            2   3345677777777776

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.00  E-value=7e-10  Score=91.85  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=84.4

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCCc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~f  209 (309)
                      .+.+|.+|||+|||.                +.+|.++.|++.++++...+        +.+...+...... ...+++|
T Consensus         9 g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~--------~~~~~~d~~~~~~~~~~~~~f   64 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNE--------GRVSVENIKQLLQSAHKESSF   64 (176)
T ss_dssp             TCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTT--------SEEEEEEGGGGGGGCCCSSCE
T ss_pred             CCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccC--------cEEEEechhcCccccCCCCCE
Confidence            455789999999996                23899999999999875321        4555555543221 1145789


Q ss_pred             cEEEEcCCCCCc-ccHHHHHHHHHHHHhcCCCeEEEEEeec--------CCchHHHHHHHHHhCCCeEEE
Q 021691          210 DVIVASDCTFFK-EFHKDLARIIKFLLKKVGPSEALFFSPK--------RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       210 DvIi~~d~ly~~-~~~~~ll~~l~~lLk~~G~~~~ii~~~~--------r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      |+|+++.++++. .+...+++.++++|||||  .+++..+.        ...+.+++.+.++++|| ++.
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~  131 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARILRPGG--CLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEV  131 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHHEEEEE--EEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEE
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHHCCCCE--EEEEEcccccccccccccCCHHHHHHHHHHCCC-cEe
Confidence            999999999987 888999999999999999  56554432        12346889999999999 663

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.00  E-value=4.8e-09  Score=98.35  Aligned_cols=121  Identities=13%  Similarity=0.152  Sum_probs=88.6

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC--------------------------------------cE
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA--------------------------------------LE  160 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~--------------------------------------~~  160 (309)
                      .+.||..+.......++..|||.+||+|.+.+.+|.....                                      .+
T Consensus       186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  265 (393)
T 3k0b_A          186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN  265 (393)
T ss_dssp             CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence            3667777776666667889999999999999887765322                                      35


Q ss_pred             EEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc-----ccHHHHHHHHHHHH
Q 021691          161 VVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK-----EFHKDLARIIKFLL  235 (309)
Q Consensus       161 V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~-----~~~~~ll~~l~~lL  235 (309)
                      |+++|+++.|++.++.|+..+++.   ..+.+...|..+...   ..+||+|+++.+ |..     .....+.+.+.+.|
T Consensus       266 V~GvDid~~al~~Ar~Na~~~gl~---~~I~~~~~D~~~~~~---~~~fD~Iv~NPP-Yg~rl~~~~~l~~ly~~lg~~l  338 (393)
T 3k0b_A          266 IIGGDIDARLIEIAKQNAVEAGLG---DLITFRQLQVADFQT---EDEYGVVVANPP-YGERLEDEEAVRQLYREMGIVY  338 (393)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCT---TCSEEEECCGGGCCC---CCCSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCC---CceEEEECChHhCCC---CCCCCEEEECCC-CccccCCchhHHHHHHHHHHHH
Confidence            999999999999999999999874   346676666543322   358999999555 542     34556777777888


Q ss_pred             hc--CCCeEEEEEee
Q 021691          236 KK--VGPSEALFFSP  248 (309)
Q Consensus       236 k~--~G~~~~ii~~~  248 (309)
                      ++  ++  .+.+++.
T Consensus       339 k~~~g~--~~~iit~  351 (393)
T 3k0b_A          339 KRMPTW--SVYVLTS  351 (393)
T ss_dssp             HTCTTC--EEEEEEC
T ss_pred             hcCCCC--EEEEEEC
Confidence            77  45  5655554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.96  E-value=8.8e-09  Score=96.24  Aligned_cols=122  Identities=11%  Similarity=0.036  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC--------------------------------------cE
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA--------------------------------------LE  160 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~--------------------------------------~~  160 (309)
                      .+.||.-+.......++..|||.+||+|.+.+.+|.....                                      .+
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            3678777776666667889999999999999987765322                                      35


Q ss_pred             EEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC----cccHHHHHHHHHHHHh
Q 021691          161 VVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF----KEFHKDLARIIKFLLK  236 (309)
Q Consensus       161 V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~----~~~~~~ll~~l~~lLk  236 (309)
                      |+++|+++.|++.+++|+..+++.   ..+.+...|..+...   ..+||+|+++.++..    ......+.+.+.+.|+
T Consensus       259 v~GvDid~~al~~Ar~Na~~~gl~---~~I~~~~~D~~~l~~---~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk  332 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREVGLE---DVVKLKQMRLQDFKT---NKINGVLISNPPYGERLLDDKAVDILYNEMGETFA  332 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCGGGCCC---CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCC---CceEEEECChHHCCc---cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999884   357776666543322   248999999554332    2456677788888888


Q ss_pred             c--CCCeEEEEEee
Q 021691          237 K--VGPSEALFFSP  248 (309)
Q Consensus       237 ~--~G~~~~ii~~~  248 (309)
                      +  ++  .+.+++.
T Consensus       333 ~~~g~--~~~iit~  344 (384)
T 3ldg_A          333 PLKTW--SQFILTN  344 (384)
T ss_dssp             TCTTS--EEEEEES
T ss_pred             hCCCc--EEEEEEC
Confidence            7  45  5666555

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.95  E-value=5.7e-09  Score=92.74  Aligned_cols=126  Identities=13%  Similarity=0.127  Sum_probs=85.6

Q ss_pred             CeEEEeCCCC---ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC----CCCCCC
Q 021691          136 KRVIELGSGY---GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF----PYIVDT  208 (309)
Q Consensus       136 ~~VLELG~Gt---G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~----~~~~~~  208 (309)
                      .+|||||||+   |.+...+.+..+..+|+++|.|+.|++.++.++..+.    ..++.+...|..+...    +.....
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~----~~~~~~v~aD~~~~~~~l~~~~~~~~  155 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP----EGRTAYVEADMLDPASILDAPELRDT  155 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS----SSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC----CCcEEEEEecccChhhhhcccccccc
Confidence            6899999997   3444444445678899999999999999998876442    1356777776654210    000123


Q ss_pred             cc-----EEEEcCCCCCccc---HHHHHHHHHHHHhcCCCeEEEEEeecCC---chHHHHHHHHHhCCCe
Q 021691          209 FD-----VIVASDCTFFKEF---HKDLARIIKFLLKKVGPSEALFFSPKRG---DSLDKFLEEIEGNHLH  267 (309)
Q Consensus       209 fD-----vIi~~d~ly~~~~---~~~ll~~l~~lLk~~G~~~~ii~~~~r~---~~~~~f~~~~~~~G~~  267 (309)
                      ||     .|+++.++|+..+   ...+++.+.+.|+|||  .+++......   ...+.+.+..+..|..
T Consensus       156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG--~Lvls~~~~d~~p~~~~~~~~~~~~~g~p  223 (277)
T 3giw_A          156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGS--YLAMSIGTAEFAPQEVGRVAREYAARNMP  223 (277)
T ss_dssp             CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTC--EEEEEEECCTTSHHHHHHHHHHHHHTTCC
T ss_pred             cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCc--EEEEEeccCCCCHHHHHHHHHHHHhcCCC
Confidence            43     5778889998766   4689999999999999  5555543332   3445566666666654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.94  E-value=4.4e-10  Score=99.74  Aligned_cols=115  Identities=12%  Similarity=0.063  Sum_probs=77.8

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh--ccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA--NSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~--n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .+++|||||||+|.++..+++. + .+|+++|+++.+++.+++++..  ++..  ..++++..-|...    .. ++||+
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~--~~rv~~~~~D~~~----~~-~~fD~  142 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKN--NKNFTHAKQLLDL----DI-KKYDL  142 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHT--CTTEEEESSGGGS----CC-CCEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccC--CCeEEEEechHHH----HH-hhCCE
Confidence            5689999999999999988887 6 8999999999999999887643  1221  2355554433221    12 68999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC---CchHHHHHHHHHhC
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR---GDSLDKFLEEIEGN  264 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---~~~~~~f~~~~~~~  264 (309)
                      |++. .    .+...+++.++++|+|||  .+++.....   ........+.+++.
T Consensus       143 Ii~d-~----~dp~~~~~~~~~~L~pgG--~lv~~~~~~~~~~~~~~~~~~~l~~~  191 (262)
T 2cmg_A          143 IFCL-Q----EPDIHRIDGLKRMLKEDG--VFISVAKHPLLEHVSMQNALKNMGGV  191 (262)
T ss_dssp             EEES-S----CCCHHHHHHHHTTEEEEE--EEEEEEECTTTCHHHHHHHHHHHHTT
T ss_pred             EEEC-C----CChHHHHHHHHHhcCCCc--EEEEEcCCcccCHHHHHHHHHHHHHh
Confidence            9984 2    123358999999999999  444433221   12234445555554

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.93  E-value=1.5e-08  Score=91.87  Aligned_cols=97  Identities=10%  Similarity=-0.022  Sum_probs=70.4

Q ss_pred             CCceeeccc-HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCC
Q 021691          110 TGLVCHWPS-EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGG  187 (309)
Q Consensus       110 tG~~~~W~s-a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~  187 (309)
                      .|+..+-+. +..++..+    ...+|.+|||+|||+|..++.+|... +..+|+++|+++.+++.+++|++.+++.   
T Consensus        81 ~G~~~~Qd~~s~l~~~~l----~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~---  153 (309)
T 2b9e_A           81 AGHLILQDRASCLPAMLL----DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS---  153 (309)
T ss_dssp             TTSEEECCTGGGHHHHHH----CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC---
T ss_pred             CCeEEEECHHHHHHHHHh----CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---
Confidence            466544444 44445544    24578999999999999999998875 3579999999999999999999998873   


Q ss_pred             CceEEEEeeCCCCCCCCC-CCCccEEEE
Q 021691          188 TTVKSMTLHWNQDDFPYI-VDTFDVIVA  214 (309)
Q Consensus       188 ~~v~~~~l~w~~~~~~~~-~~~fDvIi~  214 (309)
                       ++.+...|......... ..+||.|++
T Consensus       154 -~v~~~~~D~~~~~~~~~~~~~fD~Vl~  180 (309)
T 2b9e_A          154 -CCELAEEDFLAVSPSDPRYHEVHYILL  180 (309)
T ss_dssp             -SEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             -eEEEEeCChHhcCccccccCCCCEEEE
Confidence             56666665543221111 147999998

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.92  E-value=4.7e-10  Score=100.33  Aligned_cols=111  Identities=12%  Similarity=0.011  Sum_probs=69.6

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC--CCCceEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF--GGTTVKS  192 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~--~~~~v~~  192 (309)
                      .-.++..|.+.+.. ..+.+|++|||||||+|..+..+++.   .+|+++|+++ |+..+++    +....  ...++.+
T Consensus        64 ~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~----~~~~~~~~~~~v~~  134 (276)
T 2wa2_A           64 VSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHE----KPRLVETFGWNLIT  134 (276)
T ss_dssp             -CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSC----CCCCCCCTTGGGEE
T ss_pred             CchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhh----chhhhhhcCCCeEE
Confidence            34455666665544 44557899999999999999998775   5899999998 5332221    11100  0014454


Q ss_pred             E--EeeCCCCCCCCCCCCccEEEEcCCCCCccc----HH---HHHHHHHHHHhcCC
Q 021691          193 M--TLHWNQDDFPYIVDTFDVIVASDCTFFKEF----HK---DLARIIKFLLKKVG  239 (309)
Q Consensus       193 ~--~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~----~~---~ll~~l~~lLk~~G  239 (309)
                      .  ..|...    ...++||+|++... +....    ..   .+++.+.++|+|||
T Consensus       135 ~~~~~D~~~----l~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG  185 (276)
T 2wa2_A          135 FKSKVDVTK----MEPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQ  185 (276)
T ss_dssp             EECSCCGGG----CCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             EeccCcHhh----CCCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCC
Confidence            4  333322    12468999999544 33211    11   36888999999999

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.89  E-value=7e-10  Score=98.60  Aligned_cols=111  Identities=14%  Similarity=0.035  Sum_probs=70.4

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC--CCCceEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF--GGTTVKS  192 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~--~~~~v~~  192 (309)
                      +=.++..|.+.+.. ..+.+|++|||||||+|..+..+++.   .+|+++|+++ |+..++.    +....  ...++.+
T Consensus        56 ~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~----~~~~~~~~~~~v~~  126 (265)
T 2oxt_A           56 VSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHE----VPRITESYGWNIVK  126 (265)
T ss_dssp             SSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCC----CCCCCCBTTGGGEE
T ss_pred             cchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhh----hhhhhhccCCCeEE
Confidence            44566677766655 44557899999999999999988775   5899999988 4322211    11100  0013444


Q ss_pred             E--EeeCCCCCCCCCCCCccEEEEcCCCCCccc----HH---HHHHHHHHHHhcCC
Q 021691          193 M--TLHWNQDDFPYIVDTFDVIVASDCTFFKEF----HK---DLARIIKFLLKKVG  239 (309)
Q Consensus       193 ~--~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~----~~---~ll~~l~~lLk~~G  239 (309)
                      .  ..|...    ....+||+|++... +....    ..   .+++.+.++|+|||
T Consensus       127 ~~~~~D~~~----l~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG  177 (265)
T 2oxt_A          127 FKSRVDIHT----LPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNP  177 (265)
T ss_dssp             EECSCCTTT----SCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             EecccCHhH----CCCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCC
Confidence            4  333322    22468999999544 33211    11   27888999999999

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.89  E-value=5.9e-09  Score=93.66  Aligned_cols=122  Identities=18%  Similarity=0.095  Sum_probs=80.1

Q ss_pred             HHHHHh-hCcCcCCCCeEEEeCCCC------ChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE-
Q 021691          122 LAFFSL-SHADMFRSKRVIELGSGY------GLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS-  192 (309)
Q Consensus       122 La~~l~-~~~~~~~g~~VLELG~Gt------G~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~-  192 (309)
                      ++.|+. ....+.+|.+|||||||+      |.  ..+++..+ ..+|+++|+++. +         .       ++.+ 
T Consensus        50 l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------~-------~v~~~  110 (290)
T 2xyq_A           50 LCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------S-------DADST  110 (290)
T ss_dssp             HHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------C-------SSSEE
T ss_pred             HHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------C-------CCEEE
Confidence            566663 334566789999999955      44  44566666 579999999987 1         1       2444 


Q ss_pred             EEeeCCCCCCCCCCCCccEEEEcCCCCC-----------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHH
Q 021691          193 MTLHWNQDDFPYIVDTFDVIVASDCTFF-----------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEI  261 (309)
Q Consensus       193 ~~l~w~~~~~~~~~~~fDvIi~~d~ly~-----------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~  261 (309)
                      ...|+....   ..++||+|+++.....           ......+++.+.++|+|||  .+++... +....+.+.+.+
T Consensus       111 i~gD~~~~~---~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG--~~v~~~~-~~~~~~~l~~~l  184 (290)
T 2xyq_A          111 LIGDCATVH---TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGG--SIAVKIT-EHSWNADLYKLM  184 (290)
T ss_dssp             EESCGGGCC---CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEE--EEEEEEC-SSSCCHHHHHHH
T ss_pred             EECccccCC---ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCc--EEEEEEe-ccCCHHHHHHHH
Confidence            555554322   2367999998532211           2235688999999999999  4444333 323335788888


Q ss_pred             HhCCCeE
Q 021691          262 EGNHLHF  268 (309)
Q Consensus       262 ~~~G~~~  268 (309)
                      ++.||..
T Consensus       185 ~~~GF~~  191 (290)
T 2xyq_A          185 GHFSWWT  191 (290)
T ss_dssp             TTEEEEE
T ss_pred             HHcCCcE
Confidence            8888764

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.86  E-value=4.4e-10  Score=99.52  Aligned_cols=84  Identities=14%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCH-------HHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNP-------QVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY  204 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~-------~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~  204 (309)
                      ..++.+|||+|||+|..++.+|+.  +.+|+++|+++       ++++.+++|++.|++.   .++++...|..+.....
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~---~ri~~~~~d~~~~l~~~  155 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA---ARINLHFGNAAEQMPAL  155 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH---TTEEEEESCHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc---cCeEEEECCHHHHHHhh
Confidence            345789999999999999999886  46899999999       9999999999988763   24666655443211001


Q ss_pred             CC--CCccEEEEcCCCCCc
Q 021691          205 IV--DTFDVIVASDCTFFK  221 (309)
Q Consensus       205 ~~--~~fDvIi~~d~ly~~  221 (309)
                      .+  .+||+|++ |+.|..
T Consensus       156 ~~~~~~fD~V~~-dP~~~~  173 (258)
T 2r6z_A          156 VKTQGKPDIVYL-DPMYPE  173 (258)
T ss_dssp             HHHHCCCSEEEE-CCCC--
T ss_pred             hccCCCccEEEE-CCCCCC
Confidence            11  57999999 555543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.86  E-value=2.4e-09  Score=100.54  Aligned_cols=96  Identities=16%  Similarity=0.105  Sum_probs=69.2

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc--cCCCCCCceEEE
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN--SGAFGGTTVKSM  193 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n--~~~~~~~~v~~~  193 (309)
                      +.+.+.++.|-....  .+|++|||||||+|..++.+|+.  +.+|+++|.++.+++.+++|++.+  ++    .++.+.
T Consensus        77 Qat~e~vA~~~a~~l--~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl----~~i~~i  148 (410)
T 3ll7_A           77 QSSGAVTSSYKSRFI--REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEG----KDVNIL  148 (410)
T ss_dssp             HSCCHHHHHHGGGGS--CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTT----CEEEEE
T ss_pred             hcCHHHHHHHHHHhc--CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCC----CcEEEE
Confidence            455667777754322  13899999999999999988775  579999999999999999999988  65    356666


Q ss_pred             EeeCCCCCCCCCCCCccEEEEcCCCCC
Q 021691          194 TLHWNQDDFPYIVDTFDVIVASDCTFF  220 (309)
Q Consensus       194 ~l~w~~~~~~~~~~~fDvIi~~d~ly~  220 (309)
                      ..|...........+||+|++ |+.|.
T Consensus       149 ~~Da~~~L~~~~~~~fDvV~l-DPPrr  174 (410)
T 3ll7_A          149 TGDFKEYLPLIKTFHPDYIYV-DPARR  174 (410)
T ss_dssp             ESCGGGSHHHHHHHCCSEEEE-CCEEC
T ss_pred             ECcHHHhhhhccCCCceEEEE-CCCCc
Confidence            665443210001247999999 44443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.86  E-value=9.4e-09  Score=92.63  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+.+.+.......++.+|||+|||+|.++..+++.  +.+|+++|+++++++.+++++..  .    .++++...|...
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~--~----~~v~vi~gD~l~  107 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL--Y----NNIEIIWGDALK  107 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH--C----SSEEEEESCTTT
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc--C----CCeEEEECchhh
Confidence            344455555556678899999999999999999987  67999999999999999999872  2    356776666554


Q ss_pred             CCCCCCCCCccEEEEcCCCC
Q 021691          200 DDFPYIVDTFDVIVASDCTF  219 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly  219 (309)
                      ...  ...+||+|+++.+++
T Consensus       108 ~~~--~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A          108 VDL--NKLDFNKVVANLPYQ  125 (295)
T ss_dssp             SCG--GGSCCSEEEEECCGG
T ss_pred             CCc--ccCCccEEEEeCccc
Confidence            322  234699999865543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.84  E-value=7.9e-09  Score=98.47  Aligned_cols=134  Identities=14%  Similarity=0.042  Sum_probs=88.5

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-------------CCcEEEEEcCCHHHHHHHHHHHHhccCCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-------------EALEVVISDGNPQVVDYIQRNVDANSGAFGG  187 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-------------~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~  187 (309)
                      .+++++........+.+|||.|||+|.+.+.+++..             ...+++|+|+++.+++.++.|+..++.... 
T Consensus       158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~-  236 (445)
T 2okc_A          158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD-  236 (445)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS-
T ss_pred             HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcC-
Confidence            345555544445567899999999999988877653             235799999999999999999998876311 


Q ss_pred             CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCccc-----------------HHHHHHHHHHHHhcCCCeEEEEEeec-
Q 021691          188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEF-----------------HKDLARIIKFLLKKVGPSEALFFSPK-  249 (309)
Q Consensus       188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~-----------------~~~ll~~l~~lLk~~G~~~~ii~~~~-  249 (309)
                       .+.+...|.-..   ....+||+|+++.++.....                 ...++..+.++|+++|  .+.+..+. 
T Consensus       237 -~~~i~~gD~l~~---~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG--~~a~V~p~~  310 (445)
T 2okc_A          237 -RSPIVCEDSLEK---EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGG--RAAVVLPDN  310 (445)
T ss_dssp             -CCSEEECCTTTS---CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEE--EEEEEEEHH
T ss_pred             -CCCEeeCCCCCC---cccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCC--EEEEEECCc
Confidence             233333332211   12248999999876654221                 1367899999999999  44444432 


Q ss_pred             ---CCchHHHHHHHH
Q 021691          250 ---RGDSLDKFLEEI  261 (309)
Q Consensus       250 ---r~~~~~~f~~~~  261 (309)
                         +......+.+.+
T Consensus       311 ~L~~~~~~~~iR~~L  325 (445)
T 2okc_A          311 VLFEAGAGETIRKRL  325 (445)
T ss_dssp             HHHCSTHHHHHHHHH
T ss_pred             ccccCcHHHHHHHHH
Confidence               233334555543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.84  E-value=2.4e-09  Score=99.74  Aligned_cols=96  Identities=13%  Similarity=0.177  Sum_probs=71.0

Q ss_pred             CCCeEEEeCCC------CChhhHHHHHh-cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC-
Q 021691          134 RSKRVIELGSG------YGLAGLVIAAT-TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI-  205 (309)
Q Consensus       134 ~g~~VLELG~G------tG~~~l~la~~-~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~-  205 (309)
                      ++.+|||||||      +|..++.+++. ++..+|+++|+++.|.        ..     ..++++...|..+.  +.. 
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~-----~~rI~fv~GDa~dl--pf~~  280 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD-----ELRIRTIQGDQNDA--EFLD  280 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC-----BTTEEEEECCTTCH--HHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc-----CCCcEEEEeccccc--chhh
Confidence            56899999999      77777777765 4678999999999872        11     23567766654432  122 


Q ss_pred             -----CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          206 -----VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       206 -----~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                           .++||+|++. ..++..+....++.+.++|||||  .+++.+
T Consensus       281 ~l~~~d~sFDlVisd-gsH~~~d~~~aL~el~rvLKPGG--vlVi~D  324 (419)
T 3sso_A          281 RIARRYGPFDIVIDD-GSHINAHVRTSFAALFPHVRPGG--LYVIED  324 (419)
T ss_dssp             HHHHHHCCEEEEEEC-SCCCHHHHHHHHHHHGGGEEEEE--EEEEEC
T ss_pred             hhhcccCCccEEEEC-CcccchhHHHHHHHHHHhcCCCe--EEEEEe
Confidence                 4789999984 55667788899999999999999  555544

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.81  E-value=8.2e-09  Score=91.17  Aligned_cols=90  Identities=12%  Similarity=0.190  Sum_probs=64.8

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+++.+.......++.+|||+|||+|.++..+++.  +.+|+++|+++++++.+++++..  .    .++++...|....
T Consensus        16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~--~----~~v~~i~~D~~~~   87 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ--Q----KNITIYQNDALQF   87 (255)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT--C----TTEEEEESCTTTC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh--C----CCcEEEEcchHhC
Confidence            34445555556667899999999999999998886  47999999999999999998764  1    3567766666544


Q ss_pred             CCCCC--CCCccEEEEcCCCCC
Q 021691          201 DFPYI--VDTFDVIVASDCTFF  220 (309)
Q Consensus       201 ~~~~~--~~~fDvIi~~d~ly~  220 (309)
                      +.+..  ..+|| |+++ ..|+
T Consensus        88 ~~~~~~~~~~~~-vv~N-lPY~  107 (255)
T 3tqs_A           88 DFSSVKTDKPLR-VVGN-LPYN  107 (255)
T ss_dssp             CGGGSCCSSCEE-EEEE-CCHH
T ss_pred             CHHHhccCCCeE-EEec-CCcc
Confidence            33221  35688 6675 4444

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.79  E-value=4.4e-08  Score=85.78  Aligned_cols=91  Identities=12%  Similarity=0.134  Sum_probs=64.2

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+.+.+.......++.+|||+|||+|.++..++..  +.+|+++|+++.+++.+++++...      .++++...|...
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~------~~v~~~~~D~~~   87 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH------DNFQVLNKDILQ   87 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC------CSEEEECCCGGG
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhccC------CCeEEEEChHHh
Confidence            455666766666678899999999999999999887  479999999999999999887531      246666555543


Q ss_pred             CCCCCCCCCccEEEEcCCCCCc
Q 021691          200 DDFPYIVDTFDVIVASDCTFFK  221 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~  221 (309)
                      ...+. ...| .|++ ++.|+.
T Consensus        88 ~~~~~-~~~~-~vv~-nlPy~~  106 (244)
T 1qam_A           88 FKFPK-NQSY-KIFG-NIPYNI  106 (244)
T ss_dssp             CCCCS-SCCC-EEEE-ECCGGG
T ss_pred             CCccc-CCCe-EEEE-eCCccc
Confidence            32211 1234 4555 455553

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.79  E-value=1.5e-08  Score=91.81  Aligned_cols=131  Identities=13%  Similarity=0.046  Sum_probs=76.6

Q ss_pred             cccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcC----CHHHHHHHHHHHHhccCCCCCCceE
Q 021691          116 WPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDG----NPQVVDYIQRNVDANSGAFGGTTVK  191 (309)
Q Consensus       116 W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~----~~~~l~~~~~n~~~n~~~~~~~~v~  191 (309)
                      =-++..|.+.+.. ..+.+|++|||||||+|..+..+|+.   ++|+++|+    ++.+++.++    .+..  +...+.
T Consensus        65 sR~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~----~~~~--~~~~v~  134 (305)
T 2p41_A           65 SRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP----MSTY--GWNLVR  134 (305)
T ss_dssp             STHHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC----CCST--TGGGEE
T ss_pred             ccHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH----hhhc--CCCCeE
Confidence            3455667665554 44456899999999999999998875   47999998    454332110    0111  012355


Q ss_pred             EEEe-eCCCCCCCCCCCCccEEEEcCCCC---CcccHH---HHHHHHHHHHhcCCCeEEEEEeecCC--chHHHHHHHHH
Q 021691          192 SMTL-HWNQDDFPYIVDTFDVIVASDCTF---FKEFHK---DLARIIKFLLKKVGPSEALFFSPKRG--DSLDKFLEEIE  262 (309)
Q Consensus       192 ~~~l-~w~~~~~~~~~~~fDvIi~~d~ly---~~~~~~---~ll~~l~~lLk~~G~~~~ii~~~~r~--~~~~~f~~~~~  262 (309)
                      +... |...    ....+||+|++...+.   ...+..   .++..+.++|+|||  .+++ ....+  .....++..++
T Consensus       135 ~~~~~D~~~----l~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG--~~v~-kv~~~~~~~~~~~l~~l~  207 (305)
T 2p41_A          135 LQSGVDVFF----IPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNT--QFCV-KVLNPYMSSVIEKMEALQ  207 (305)
T ss_dssp             EECSCCTTT----SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTC--EEEE-EESCCCSHHHHHHHHHHH
T ss_pred             EEecccccc----CCcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCC--EEEE-EeCCCCCchHHHHHHHHH
Confidence            4433 2221    1246899999943332   111222   46788889999999  4443 33333  23345555554


Q ss_pred             h
Q 021691          263 G  263 (309)
Q Consensus       263 ~  263 (309)
                      .
T Consensus       208 ~  208 (305)
T 2p41_A          208 R  208 (305)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.78  E-value=6.8e-08  Score=96.97  Aligned_cols=124  Identities=12%  Similarity=0.034  Sum_probs=88.3

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc------------------------------------------
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT------------------------------------------  156 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~------------------------------------------  156 (309)
                      -+.||..+.......++..|||.+||+|.+.+.+|...                                          
T Consensus       175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~  254 (703)
T 3v97_A          175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE  254 (703)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence            36787777776666678899999999999999877642                                          


Q ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC----cccHHHHHHHHH
Q 021691          157 EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF----KEFHKDLARIIK  232 (309)
Q Consensus       157 ~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~----~~~~~~ll~~l~  232 (309)
                      ...+|+|+|+++.|++.++.|+..+++.   ..+.+...|..+...+...++||+|+++.++..    ......+.+.+.
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~agv~---~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~  331 (703)
T 3v97_A          255 YSSHFYGSDSDARVIQRARTNARLAGIG---ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLG  331 (703)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTCG---GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHH
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHcCCC---CceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHH
Confidence            1247999999999999999999999984   357777776654332322348999999655432    234566677676


Q ss_pred             HHHh---cCCCeEEEEEe
Q 021691          233 FLLK---KVGPSEALFFS  247 (309)
Q Consensus       233 ~lLk---~~G~~~~ii~~  247 (309)
                      +.++   +||  .+.+++
T Consensus       332 ~~lk~~~~g~--~~~ilt  347 (703)
T 3v97_A          332 RIMKNQFGGW--NLSLFS  347 (703)
T ss_dssp             HHHHHHCTTC--EEEEEE
T ss_pred             HHHHhhCCCC--eEEEEe
Confidence            6666   466  444444

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.70  E-value=2.9e-09  Score=93.34  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      +.+.......++.+|||+|||+|.++..++..  +.+|+++|+++.+++.+++++..      ..++++...|......+
T Consensus        19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~~------~~~v~~~~~D~~~~~~~   90 (245)
T 1yub_A           19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTTTTCC
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhcc------CCceEEEECChhhcCcc
Confidence            34444445567889999999999999999887  37999999999999988877541      13455555554432211


Q ss_pred             CCCCCccEEEEcCCCCCcc-cHHHHH--------------HHHHHHHhcCC
Q 021691          204 YIVDTFDVIVASDCTFFKE-FHKDLA--------------RIIKFLLKKVG  239 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~-~~~~ll--------------~~l~~lLk~~G  239 (309)
                      . .++| .|+++.+.+... ....++              +.+.++|+++|
T Consensus        91 ~-~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G  139 (245)
T 1yub_A           91 N-KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHR  139 (245)
T ss_dssp             C-SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGG
T ss_pred             c-CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCC
Confidence            1 2568 677754443321 112222              44677777777

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.68  E-value=3.2e-08  Score=88.11  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=64.2

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+++.+.......++ +|||+|||+|.++..+++.  +.+|+++|+++++++.+++++..       .++++...|...
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~-------~~v~vi~~D~l~  102 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG-------LPVRLVFQDALL  102 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT-------SSEEEEESCGGG
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC-------CCEEEEECChhh
Confidence            3344455555556678 9999999999999999887  46899999999999999988652       245666655443


Q ss_pred             CCCCCCCCCccEEEEcCCCCC
Q 021691          200 DDFPYIVDTFDVIVASDCTFF  220 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~  220 (309)
                      .+.+.. ..+|.|+++-+.+.
T Consensus       103 ~~~~~~-~~~~~iv~NlPy~i  122 (271)
T 3fut_A          103 YPWEEV-PQGSLLVANLPYHI  122 (271)
T ss_dssp             SCGGGS-CTTEEEEEEECSSC
T ss_pred             CChhhc-cCccEEEecCcccc
Confidence            332211 25899998655444

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.66  E-value=1.1e-08  Score=92.48  Aligned_cols=80  Identities=14%  Similarity=0.172  Sum_probs=61.6

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCC-CCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPY-IVD  207 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~-~~~  207 (309)
                      ...+|.+|||+|||+|..++.+++.+++.+|+++|.++.|++.+++|+..++     .++.+...++....  ... ...
T Consensus        23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-----~~v~~v~~d~~~l~~~l~~~g~~   97 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-----DRVSLFKVSYREADFLLKTLGIE   97 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-----TTEEEEECCGGGHHHHHHHTTCS
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEECCHHHHHHHHHhcCCC
Confidence            3457889999999999999999998777899999999999999999988775     25666666654321  000 115


Q ss_pred             CccEEEEc
Q 021691          208 TFDVIVAS  215 (309)
Q Consensus       208 ~fDvIi~~  215 (309)
                      +||.|++.
T Consensus        98 ~~D~Vl~D  105 (301)
T 1m6y_A           98 KVDGILMD  105 (301)
T ss_dssp             CEEEEEEE
T ss_pred             CCCEEEEc
Confidence            79999983

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.62  E-value=4.7e-08  Score=86.35  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=65.0

Q ss_pred             CCC--CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC--CCC---CCceEEEEeeCCCCCCCCC
Q 021691          133 FRS--KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG--AFG---GTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       133 ~~g--~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~--~~~---~~~v~~~~l~w~~~~~~~~  205 (309)
                      .+|  .+|||+|||+|..++.+|..  +.+|+++|.++.+.+.++.|++....  ...   ..++++...|..+. ....
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~-L~~~  161 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-LTDI  161 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH-STTC
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH-HHhC
Confidence            356  89999999999999999887  44899999999988888877654321  000   02455554433211 1122


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ..+||+|++ |+.|....-..+++...++|++.+
T Consensus       162 ~~~fDvV~l-DP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          162 TPRPQVVYL-DPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             SSCCSEEEE-CCCCCCCCC-----HHHHHHHHHS
T ss_pred             cccCCEEEE-cCCCCCcccchHHHHHHHHHHHhh
Confidence            246999999 677765443456666666776544

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.58  E-value=1.5e-07  Score=82.63  Aligned_cols=94  Identities=10%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .++  ..+.+.+.......++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.++++   .     ..++++..
T Consensus        14 l~d--~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~---~-----~~~v~~i~   82 (249)
T 3ftd_A           14 LVS--EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI---G-----DERLEVIN   82 (249)
T ss_dssp             EEC--HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS---C-----CTTEEEEC
T ss_pred             cCC--HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc---c-----CCCeEEEE
Confidence            444  344455555556667899999999999999998875 557999999999999999876   1     13466665


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCc
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFK  221 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~  221 (309)
                      .|....+.+.....| .|++ +..|+.
T Consensus        83 ~D~~~~~~~~~~~~~-~vv~-NlPy~i  107 (249)
T 3ftd_A           83 EDASKFPFCSLGKEL-KVVG-NLPYNV  107 (249)
T ss_dssp             SCTTTCCGGGSCSSE-EEEE-ECCTTT
T ss_pred             cchhhCChhHccCCc-EEEE-ECchhc
Confidence            554433322222223 4555 566654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.57  E-value=5.6e-07  Score=79.31  Aligned_cols=151  Identities=16%  Similarity=0.010  Sum_probs=93.5

Q ss_pred             cCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691          107 IDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG  186 (309)
Q Consensus       107 ~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~  186 (309)
                      ..++|.. .=-|+..|.+.... ..+.++.+|||||||+|..+..++...+...|+++|+..++....     ......+
T Consensus        49 ~~~~~~Y-rSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~p-----i~~~~~g  121 (277)
T 3evf_A           49 KVDTGVA-VSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKP-----MNVQSLG  121 (277)
T ss_dssp             CCSSCBC-SSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCC-----CCCCBTT
T ss_pred             CccCCCc-cccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccc-----cccCcCC
Confidence            3455775 78889999998887 456678899999999999999877766677888888764321000     0000000


Q ss_pred             CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc----ccHH---HHHHHHHHHHhcC-CCeEEEEEeecC--CchHHH
Q 021691          187 GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK----EFHK---DLARIIKFLLKKV-GPSEALFFSPKR--GDSLDK  256 (309)
Q Consensus       187 ~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~----~~~~---~ll~~l~~lLk~~-G~~~~ii~~~~r--~~~~~~  256 (309)
                       .++....-+.  +.......+||+|++ |...+.    .+..   .|++.+.++|+|| |   .+++...+  ......
T Consensus       122 -~~ii~~~~~~--dv~~l~~~~~DlVls-D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G---~FV~KVf~pyg~~~~~  194 (277)
T 3evf_A          122 -WNIITFKDKT--DIHRLEPVKCDTLLC-DIGESSSSSVTEGERTVRVLDTVEKWLACGVD---NFCVKVLAPYMPDVLE  194 (277)
T ss_dssp             -GGGEEEECSC--CTTTSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCS---EEEEEESCTTSHHHHH
T ss_pred             -CCeEEEeccc--eehhcCCCCccEEEe-cCccCcCchHHHHHHHHHHHHHHHHHhCCCCC---eEEEEecCCCCccHHH
Confidence             0222211111  122334578999999 543331    1111   3578889999999 8   33445555  556677


Q ss_pred             HHHHHHhCCCeEEEE
Q 021691          257 FLEEIEGNHLHFSII  271 (309)
Q Consensus       257 f~~~~~~~G~~~~~~  271 (309)
                      |++.+++..-.+...
T Consensus       195 l~~~lk~~F~~V~~~  209 (277)
T 3evf_A          195 KLELLQRRFGGTVIR  209 (277)
T ss_dssp             HHHHHHHHHCCEEEC
T ss_pred             HHHHHHHhcCCEEEE
Confidence            888887764344433

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.53  E-value=1.4e-07  Score=84.37  Aligned_cols=91  Identities=12%  Similarity=0.075  Sum_probs=60.4

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      .+.+.+.......++.+|||+|||+|.++..+++..+.  .+|+++|+++++++.++++. .       .++.+...|..
T Consensus        29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~-------~~v~~i~~D~~  100 (279)
T 3uzu_A           29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G-------ELLELHAGDAL  100 (279)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G-------GGEEEEESCGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C-------CCcEEEECChh
Confidence            34444555455667899999999999999999987432  33999999999999999883 1       24566665554


Q ss_pred             CCCCCCCCC----CccEEEEcCCCCC
Q 021691          199 QDDFPYIVD----TFDVIVASDCTFF  220 (309)
Q Consensus       199 ~~~~~~~~~----~fDvIi~~d~ly~  220 (309)
                      ..+.+....    ..+.|+++- .|+
T Consensus       101 ~~~~~~~~~~~~~~~~~vv~Nl-PY~  125 (279)
T 3uzu_A          101 TFDFGSIARPGDEPSLRIIGNL-PYN  125 (279)
T ss_dssp             GCCGGGGSCSSSSCCEEEEEEC-CHH
T ss_pred             cCChhHhcccccCCceEEEEcc-Ccc
Confidence            333221111    334677754 444

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.52  E-value=1.9e-07  Score=91.92  Aligned_cols=103  Identities=15%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             CcCcCCCCeEEEeCCCCChhhHHH---HHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691          129 HADMFRSKRVIELGSGYGLAGLVI---AATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY  204 (309)
Q Consensus       129 ~~~~~~g~~VLELG~GtG~~~l~l---a~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~  204 (309)
                      +....+++.|||+|||+|.++..+   ++..+. -+|+|+|.|+ +...+++.+..|+..   .+|++...+..+-.   
T Consensus       352 ~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~---dkVtVI~gd~eev~---  424 (637)
T 4gqb_A          352 EEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWG---SQVTVVSSDMREWV---  424 (637)
T ss_dssp             GGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTG---GGEEEEESCTTTCC---
T ss_pred             ccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCC---CeEEEEeCcceecc---
Confidence            344456678999999999985443   333211 1789999998 455677888999984   67888887665543   


Q ss_pred             CCCCccEEEEcC---CCCCcccHHHHHHHHHHHHhcCC
Q 021691          205 IVDTFDVIVASD---CTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       205 ~~~~fDvIi~~d---~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +.+++|+||+--   ++.+. .....+....++|||+|
T Consensus       425 LPEKVDIIVSEwMG~fLl~E-~mlevL~Ardr~LKPgG  461 (637)
T 4gqb_A          425 APEKADIIVSELLGSFADNE-LSPECLDGAQHFLKDDG  461 (637)
T ss_dssp             CSSCEEEEECCCCBTTBGGG-CHHHHHHHHGGGEEEEE
T ss_pred             CCcccCEEEEEcCccccccc-CCHHHHHHHHHhcCCCc
Confidence            346899999822   23333 34567888899999998

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.52  E-value=9.1e-07  Score=88.61  Aligned_cols=130  Identities=12%  Similarity=0.045  Sum_probs=82.9

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcC---CcEEEEEcCCHHHHHHH--HHHHHhccCCCCCCceEEEEeeCCCCCCCCCCC
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTE---ALEVVISDGNPQVVDYI--QRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVD  207 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~---~~~V~~tD~~~~~l~~~--~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~  207 (309)
                      ..+.+|||.|||+|.+.+.+++..+   ..+++|+|+++.+++.+  +.|+..|++..+.....+..-++... ......
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~-~~~~~~  398 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL-NPEDFA  398 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC-CGGGGT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc-cccccC
Confidence            4678999999999999999888764   35799999999999999  77766655432212222222221111 111246


Q ss_pred             CccEEEEcCCCCCc-----------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeecC-----Cch
Q 021691          208 TFDVIVASDCTFFK-----------------------------EFHKDLARIIKFLLKKVGPSEALFFSPKR-----GDS  253 (309)
Q Consensus       208 ~fDvIi~~d~ly~~-----------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----~~~  253 (309)
                      +||+|+++.++...                             .....++..+.++|+++|  .+.+..+..     ...
T Consensus       399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGG--rLAfIlP~s~Lf~sg~~  476 (878)
T 3s1s_A          399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGT--VISAIMPKQYLTAQGNE  476 (878)
T ss_dssp             TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTC--EEEEEEETHHHHCCSHH
T ss_pred             CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCc--EEEEEEChHHhccCChH
Confidence            89999997665221                             012346777889999999  555555432     223


Q ss_pred             HHHHHHHHHhCC
Q 021691          254 LDKFLEEIEGNH  265 (309)
Q Consensus       254 ~~~f~~~~~~~G  265 (309)
                      ...+.+.+.+.+
T Consensus       477 ~kkLRk~LLe~~  488 (878)
T 3s1s_A          477 SKAFREFLVGNF  488 (878)
T ss_dssp             HHHHHHHHTTTT
T ss_pred             HHHHHHHHHhCC
Confidence            566777665553

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.50  E-value=1.9e-07  Score=91.05  Aligned_cols=140  Identities=9%  Similarity=-0.122  Sum_probs=87.0

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC------------------CcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE------------------ALEVVISDGNPQVVDYIQRNVDANSG  183 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~------------------~~~V~~tD~~~~~l~~~~~n~~~n~~  183 (309)
                      +++++.......++.+|||.+||+|.+.+.+++...                  ..+++|+|+++.+++.++.|+..++.
T Consensus       157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi  236 (541)
T 2ar0_A          157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  236 (541)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence            334444333445688999999999998887766531                  23799999999999999999998876


Q ss_pred             CCC-CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCccc--------------HHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          184 AFG-GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEF--------------HKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       184 ~~~-~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~--------------~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ... ...+.+...|.-... .....+||+|+++.++.....              ...++..+.++|+++|  .+.+..+
T Consensus       237 ~~~~~~~~~I~~gDtL~~~-~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG--r~a~V~p  313 (541)
T 2ar0_A          237 EGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG--RAAVVVP  313 (541)
T ss_dssp             CCBGGGTBSEEESCTTSHH-HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE--EEEEEEE
T ss_pred             CccccccCCeEeCCCcccc-cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC--EEEEEec
Confidence            310 001223322211100 012357999999776543221              2367888999999999  4444443


Q ss_pred             c----CCchHHHHHHHHHhC
Q 021691          249 K----RGDSLDKFLEEIEGN  264 (309)
Q Consensus       249 ~----r~~~~~~f~~~~~~~  264 (309)
                      .    +......+.+.+.+.
T Consensus       314 ~~~L~~~~~~~~iR~~L~~~  333 (541)
T 2ar0_A          314 DNVLFEGGKGTDIRRDLMDK  333 (541)
T ss_dssp             HHHHHCCTHHHHHHHHHHHH
T ss_pred             CcceecCcHHHHHHHHHhhc
Confidence            2    333345565555544

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.48  E-value=5e-06  Score=80.86  Aligned_cols=155  Identities=12%  Similarity=0.040  Sum_probs=98.5

Q ss_pred             CCCceeeccc--HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc---CCcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691          109 NTGLVCHWPS--EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT---EALEVVISDGNPQVVDYIQRNVDANSG  183 (309)
Q Consensus       109 ~tG~~~~W~s--a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~---~~~~V~~tD~~~~~l~~~~~n~~~n~~  183 (309)
                      ..|.++| |.  +..|++.+........+.+|+|.+||+|.+.+.+++..   +...++|+|+++.++..++.|+..+++
T Consensus       195 ~~G~fyT-P~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi  273 (542)
T 3lkd_A          195 KAGEFYT-PQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV  273 (542)
T ss_dssp             CCSSCCC-CHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             cCCeecc-cHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC
Confidence            3455532 33  33455555433223567899999999998888877764   356899999999999999999998887


Q ss_pred             CCCCCceEEEEeeCCCCCCC-CCCCCccEEEEcCCCCCcc--------c---------------HHHHHHHHHHHHh-cC
Q 021691          184 AFGGTTVKSMTLHWNQDDFP-YIVDTFDVIVASDCTFFKE--------F---------------HKDLARIIKFLLK-KV  238 (309)
Q Consensus       184 ~~~~~~v~~~~l~w~~~~~~-~~~~~fDvIi~~d~ly~~~--------~---------------~~~ll~~l~~lLk-~~  238 (309)
                      ..  ..+.+...|.-..+.+ ....+||+|+++.++-...        +               --.++..+.++|+ ++
T Consensus       274 ~~--~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~g  351 (542)
T 3lkd_A          274 PI--ENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDN  351 (542)
T ss_dssp             CG--GGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTT
T ss_pred             Cc--CccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCc
Confidence            31  2344444433222111 2346899999976653210        0               0137888889999 99


Q ss_pred             CCeEEEEEeec----CCchHHHHHHHHHhCCCeE
Q 021691          239 GPSEALFFSPK----RGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       239 G~~~~ii~~~~----r~~~~~~f~~~~~~~G~~~  268 (309)
                      |  .+.+..+.    +......+.+.+-+.+.-.
T Consensus       352 G--r~a~VlP~g~Lf~~~~~~~iRk~Lle~~~l~  383 (542)
T 3lkd_A          352 G--VMAIVLPHGVLFRGNAEGTIRKALLEEGAID  383 (542)
T ss_dssp             C--EEEEEEETHHHHCCTHHHHHHHHHHHTTCEE
T ss_pred             e--eEEEEecchHhhCCchhHHHHHHHHhCCcee
Confidence            9  44444433    3334566777776665433

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.46  E-value=1.8e-07  Score=82.65  Aligned_cols=133  Identities=14%  Similarity=0.083  Sum_probs=80.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHh-------cCC-----cEEEEEcCCH---HHHH-----------HHHHHHHhcc-----
Q 021691          134 RSKRVIELGSGYGLAGLVIAAT-------TEA-----LEVVISDGNP---QVVD-----------YIQRNVDANS-----  182 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~-------~~~-----~~V~~tD~~~---~~l~-----------~~~~n~~~n~-----  182 (309)
                      ++.+|||+|+|+|+..+.+++.       .+.     .+|+++|..|   +.+.           .++.++....     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4569999999999998886654       332     4899999876   4444           4555554421     


Q ss_pred             -----CCCCCCceEEEEeeCCCCCCCCCC----CCccEEEEcCCCC---Ccc-cHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          183 -----GAFGGTTVKSMTLHWNQDDFPYIV----DTFDVIVASDCTF---FKE-FHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       183 -----~~~~~~~v~~~~l~w~~~~~~~~~----~~fDvIi~~d~ly---~~~-~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                           ...+..++++...|..+. .+...    ..||+|+. |.+-   +++ -.+.+++.+.++|+|||  .++.++. 
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~-l~~~~~~~~~~~D~ifl-D~fsp~~~p~lw~~~~l~~l~~~L~pGG--~l~tysa-  214 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINEL-ISQLDDSLNQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPGG--TLATFTS-  214 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHH-GGGSCGGGTTCEEEEEE-CSSCTTTCGGGCCHHHHHHHHHHEEEEE--EEEESCC-
T ss_pred             hhheeccCCceEEEEEECcHHHH-HhhcccccCCeEEEEEE-CCCCcccChhhcCHHHHHHHHHHcCCCc--EEEEEeC-
Confidence                 111112233333322211 11222    37999999 6532   222 14679999999999999  3332221 


Q ss_pred             CCchHHHHHHHHHhCCCeEEEEeccC
Q 021691          250 RGDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       250 r~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                       .   ..+...+.++||.++....+.
T Consensus       215 -a---~~vrr~L~~aGF~v~~~~g~~  236 (257)
T 2qy6_A          215 -A---GFVRRGLQEAGFTMQKRKGFG  236 (257)
T ss_dssp             -B---HHHHHHHHHHTEEEEEECCST
T ss_pred             -C---HHHHHHHHHCCCEEEeCCCCC
Confidence             1   256778888999998776654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.45  E-value=1.4e-06  Score=73.89  Aligned_cols=120  Identities=21%  Similarity=0.243  Sum_probs=77.1

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC------C------
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD------D------  201 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~------~------  201 (309)
                      +.++|||+|||  .-++.+|+. .+++|+.+|.+++..+.++++++.++.. ...++.+...+..+.      .      
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~-~~~~I~~~~gda~~~~~wg~p~~~~~~~  105 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPA-EGTEVNIVWTDIGPTGDWGHPVSDAKWR  105 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCC-TTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred             CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCCceEEEEeCchhhhcccccccchhhh
Confidence            46899999985  667776663 3679999999999999999999998861 013566665543211      0      


Q ss_pred             -CC--------C-CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee--cCC--chHHHHHHHHHhCC
Q 021691          202 -FP--------Y-IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP--KRG--DSLDKFLEEIEGNH  265 (309)
Q Consensus       202 -~~--------~-~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~--~r~--~~~~~f~~~~~~~G  265 (309)
                       .+        . ..++||+|+. |.-+    ....+..+.++|++||   +++++.  .|+  ....+|++..+..|
T Consensus       106 ~l~~~~~~i~~~~~~~~fDlIfI-Dg~k----~~~~~~~~l~~l~~GG---~Iv~DNv~~r~~y~~v~~~~~~~~~~~  175 (202)
T 3cvo_A          106 SYPDYPLAVWRTEGFRHPDVVLV-DGRF----RVGCALATAFSITRPV---TLLFDDYSQRRWQHQVEEFLGAPLMIG  175 (202)
T ss_dssp             GTTHHHHGGGGCTTCCCCSEEEE-CSSS----HHHHHHHHHHHCSSCE---EEEETTGGGCSSGGGGHHHHCCCEEET
T ss_pred             hHHHHhhhhhccccCCCCCEEEE-eCCC----chhHHHHHHHhcCCCe---EEEEeCCcCCcchHHHHHHHhHHhhcC
Confidence             11        1 1368999999 4421    2244455668999998   666664  332  23345655444444

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.41  E-value=1.4e-07  Score=83.10  Aligned_cols=89  Identities=7%  Similarity=-0.031  Sum_probs=57.7

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcE--EEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALE--VVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~--V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      .+++.+.......++.+|||+|||+|.++. +++   +.+  |+++|+++.|++.+++++..+      .++++...|..
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~---~~~~~v~avEid~~~~~~a~~~~~~~------~~v~~i~~D~~   77 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG---ERLDQLTVIELDRDLAARLQTHPFLG------PKLTIYQQDAM   77 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH---TTCSCEEEECCCHHHHHHHHTCTTTG------GGEEEECSCGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh---CCCCeEEEEECCHHHHHHHHHHhccC------CceEEEECchh
Confidence            344455554456678899999999999999 654   246  999999999999999876432      24555555443


Q ss_pred             CCCCCCC---CCCccEEEEcCCCC
Q 021691          199 QDDFPYI---VDTFDVIVASDCTF  219 (309)
Q Consensus       199 ~~~~~~~---~~~fDvIi~~d~ly  219 (309)
                      ..+.+..   .+..|.|+++-+.+
T Consensus        78 ~~~~~~~~~~~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           78 TFNFGELAEKMGQPLRVFGNLPYN  101 (252)
T ss_dssp             GCCHHHHHHHHTSCEEEEEECCTT
T ss_pred             hCCHHHhhcccCCceEEEECCCCC
Confidence            3221111   02346777755544

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.41  E-value=1.9e-06  Score=76.10  Aligned_cols=149  Identities=13%  Similarity=0.009  Sum_probs=92.3

Q ss_pred             CCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691          109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGT  188 (309)
Q Consensus       109 ~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~  188 (309)
                      ++|.. .=-|+..|.+..... .+.++.+|||||||.|..+..+++..+...|+++|+...+......     .... ..
T Consensus        67 ~~g~Y-rSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-----~~~~-g~  138 (282)
T 3gcz_A           67 QNGIA-VSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-----RTTL-GW  138 (282)
T ss_dssp             CSSBC-SSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-----CCBT-TG
T ss_pred             cCCCE-ecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-----cccC-CC
Confidence            34665 778899999888775 6678889999999999999998877777889999986542111100     0000 01


Q ss_pred             ceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcc----cH---HHHHHHHHHHHhcC--CCeEEEEEeecC--CchHHHH
Q 021691          189 TVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKE----FH---KDLARIIKFLLKKV--GPSEALFFSPKR--GDSLDKF  257 (309)
Q Consensus       189 ~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~----~~---~~ll~~l~~lLk~~--G~~~~ii~~~~r--~~~~~~f  257 (309)
                      ++..  +.-+.+.......++|+|++ |...+..    +.   -.|++.+..+|++|  |   .+++-..+  ......|
T Consensus       139 ~ii~--~~~~~dv~~l~~~~~DvVLS-DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G---~Fv~KvF~pyg~~~~~l  212 (282)
T 3gcz_A          139 NLIR--FKDKTDVFNMEVIPGDTLLC-DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYT---EFCIKVLCPYTPLIMEE  212 (282)
T ss_dssp             GGEE--EECSCCGGGSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCC---EEEEEESCCCSHHHHHH
T ss_pred             ceEE--eeCCcchhhcCCCCcCEEEe-cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCC---cEEEEEecCCCccHHHH
Confidence            1111  11111111233578999999 5444421    11   13677788999999  8   34445455  4566778


Q ss_pred             HHHHHhCCCeEEEE
Q 021691          258 LEEIEGNHLHFSII  271 (309)
Q Consensus       258 ~~~~~~~G~~~~~~  271 (309)
                      ++.+++..-.+...
T Consensus       213 ~~~lk~~F~~V~~~  226 (282)
T 3gcz_A          213 LSRLQLKHGGGLVR  226 (282)
T ss_dssp             HHHHHHHHCCEEEC
T ss_pred             HHHHHHhcCCEEEE
Confidence            88887764344433

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.37  E-value=6.1e-06  Score=73.86  Aligned_cols=131  Identities=17%  Similarity=0.161  Sum_probs=89.2

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh-ccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA-NSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ..++||=||.|.|.+...+++..+..+|+.+|+++.+++.+++.+.. ++......++++..-|.-... ....++||+|
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l-~~~~~~yDvI  161 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV-NQTSQTFDVI  161 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT-SCSSCCEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH-hhccccCCEE
Confidence            46899999999999999988877778999999999999999987643 333333567777766654332 2345789999


Q ss_pred             EEcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeE
Q 021691          213 VASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       213 i~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~  268 (309)
                      |. |+.-...     .-..+++.+++.|+++|  .++..+..   .........+.+++..-.+
T Consensus       162 i~-D~~dp~~~~~~L~t~eFy~~~~~~L~p~G--v~v~q~~sp~~~~~~~~~~~~~l~~~F~~v  222 (294)
T 3o4f_A          162 IS-DCTDPIGPGESLFTSAFYEGCKRCLNPGG--IFVAQNGVCFLQQEEAIDSHRKLSHYFSDV  222 (294)
T ss_dssp             EE-SCCCCCCTTCCSSCCHHHHHHHHTEEEEE--EEEEEEEESSSCCHHHHHHHHHHHHHCSEE
T ss_pred             EE-eCCCcCCCchhhcCHHHHHHHHHHhCCCC--EEEEecCCcccChHHHHHHHHHHHhhCCce
Confidence            98 5432111     12457889999999999  44433222   2344455556666654444

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.36  E-value=2e-06  Score=83.76  Aligned_cols=150  Identities=12%  Similarity=0.057  Sum_probs=91.3

Q ss_pred             CCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC---------------CcEEEEEcCCHHHHHH
Q 021691          109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE---------------ALEVVISDGNPQVVDY  173 (309)
Q Consensus       109 ~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~---------------~~~V~~tD~~~~~l~~  173 (309)
                      ..|.. .=|  ..+++++........+ +|||.+||+|.+.+.+++...               ...++|+|+++.++..
T Consensus       223 ~~G~f-yTP--~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~l  298 (544)
T 3khk_A          223 QGGQY-YTP--KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKL  298 (544)
T ss_dssp             CSTTT-CCC--HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHH
T ss_pred             cCCeE-eCC--HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHH
Confidence            44554 223  2333344333233344 999999999988776654321               3589999999999999


Q ss_pred             HHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcc-----------------------c------H
Q 021691          174 IQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKE-----------------------F------H  224 (309)
Q Consensus       174 ~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~-----------------------~------~  224 (309)
                      ++.|+..+++..   .+.+...|.-.. ......+||+|+++.++....                       .      -
T Consensus       299 A~~Nl~l~gi~~---~i~i~~gDtL~~-~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~  374 (544)
T 3khk_A          299 AAMNMVIRGIDF---NFGKKNADSFLD-DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNAN  374 (544)
T ss_dssp             HHHHHHHTTCCC---BCCSSSCCTTTS-CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTH
T ss_pred             HHHHHHHhCCCc---ccceeccchhcC-cccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchh
Confidence            999999988742   221111111111 112246899999977654310                       0      0


Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEeec----CC-chHHHHHHHHHhCCCeE
Q 021691          225 KDLARIIKFLLKKVGPSEALFFSPK----RG-DSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       225 ~~ll~~l~~lLk~~G~~~~ii~~~~----r~-~~~~~f~~~~~~~G~~~  268 (309)
                      -.++..+.++|+++|  .+.+..+.    +. .....+.+.+-+.+.-.
T Consensus       375 ~~Fl~~~l~~Lk~gG--r~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l~  421 (544)
T 3khk_A          375 FAWMLHMLYHLAPTG--SMALLLANGSMSSNTNNEGEIRKTLVEQDLVE  421 (544)
T ss_dssp             HHHHHHHHHTEEEEE--EEEEEEETHHHHCCGGGHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHhccCc--eEEEEecchhhhcCcchHHHHHHHHHhCCcHh
Confidence            157888899999999  44444432    22 35567777777766533

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.30  E-value=4.7e-07  Score=89.40  Aligned_cols=101  Identities=17%  Similarity=0.108  Sum_probs=69.7

Q ss_pred             CCeEEEeCCCCChhhHHH---HHhc----------CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          135 SKRVIELGSGYGLAGLVI---AATT----------EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~l---a~~~----------~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      ++.|||+|||+|.++..+   ++..          .+.+|+|+|.|+.++..++.... |+..   ..|++..-+..+..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~---d~VtVI~gd~eev~  485 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK---RRVTIIESDMRSLP  485 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT---TCSEEEESCGGGHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC---CeEEEEeCchhhcc
Confidence            468999999999997532   2211          13499999999988877776654 7773   45777766554332


Q ss_pred             CC---CCCCCccEEEEcCCCCC--cccHHHHHHHHHHHHhcCC
Q 021691          202 FP---YIVDTFDVIVASDCTFF--KEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       202 ~~---~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G  239 (309)
                      .+   ...++.|+||+--.=|+  .+..+..+..+.++|+|+|
T Consensus       486 lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~G  528 (745)
T 3ua3_A          486 GIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTT  528 (745)
T ss_dssp             HHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTC
T ss_pred             cccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCc
Confidence            21   11468999999443232  3456678888899999999

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.23  E-value=1.4e-05  Score=71.02  Aligned_cols=149  Identities=11%  Similarity=0.002  Sum_probs=91.7

Q ss_pred             CCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCC
Q 021691          108 DNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGG  187 (309)
Q Consensus       108 ~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~  187 (309)
                      .++|.. .=.|+..|.+.... .-+.+|++||||||++|..+..+++..+...|+++|+...+.....      ......
T Consensus        57 ~~~g~y-rSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~------~~~~~~  128 (300)
T 3eld_A           57 TDVGIS-VSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPI------HMQTLG  128 (300)
T ss_dssp             SSSCCC-SSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC------CCCBTT
T ss_pred             ccCCCc-cchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccc------cccccC
Confidence            455765 67789999998888 5556889999999999999999887667778999998643210000      000000


Q ss_pred             CceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCccc----H---HHHHHHHHHHHhcC-CCeEEEEEeecC--CchHHHH
Q 021691          188 TTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEF----H---KDLARIIKFLLKKV-GPSEALFFSPKR--GDSLDKF  257 (309)
Q Consensus       188 ~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~----~---~~ll~~l~~lLk~~-G~~~~ii~~~~r--~~~~~~f  257 (309)
                      .++....  -+.+.......++|+|++ |..-+...    .   -.|+..+..+|++| |   .+++-..+  ......|
T Consensus       129 ~~iv~~~--~~~di~~l~~~~~DlVls-D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G---~FV~KvF~~yG~~~~~l  202 (300)
T 3eld_A          129 WNIVKFK--DKSNVFTMPTEPSDTLLC-DIGESSSNPLVERDRTMKVLENFERWKHVNTE---NFCVKVLAPYHPDVIEK  202 (300)
T ss_dssp             GGGEEEE--CSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCC---EEEEEESSTTSHHHHHH
T ss_pred             CceEEee--cCceeeecCCCCcCEEee-cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCC---cEEEEeccccCccHHHH
Confidence            1111111  111111223468999999 54444221    1   24678888999999 8   34444555  5566777


Q ss_pred             HHHHHhCCCeEEE
Q 021691          258 LEEIEGNHLHFSI  270 (309)
Q Consensus       258 ~~~~~~~G~~~~~  270 (309)
                      +..++...-.+..
T Consensus       203 l~~lk~~F~~V~~  215 (300)
T 3eld_A          203 LERLQLRFGGGIV  215 (300)
T ss_dssp             HHHHHHHHCCEEE
T ss_pred             HHHHHHhCCcEEE
Confidence            7777765333433

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.15  E-value=3.6e-07  Score=81.08  Aligned_cols=152  Identities=13%  Similarity=0.080  Sum_probs=99.2

Q ss_pred             CCceeeccc----HHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC
Q 021691          110 TGLVCHWPS----EDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF  185 (309)
Q Consensus       110 tG~~~~W~s----a~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~  185 (309)
                      .|...+|.+    ...|..|+..... +.+..+||+-+|+|.+|+.+..  ++.+++++|.++..++.+++|+...    
T Consensus        64 ~GI~rl~~~~~~~p~~l~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~----  136 (283)
T 2oo3_A           64 EGINPVWLDRENLPSLFLEYISVIKQ-INLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFN----  136 (283)
T ss_dssp             GTHHHHHHTGGGSCGGGHHHHHHHHH-HSSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTT----
T ss_pred             HHHHHHHhcccCCcHHHHHHHHHHHH-hcCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcC----
Confidence            354446762    2224444433222 4677899999999999999554  5689999999999999999987541    


Q ss_pred             CCCceEEEEeeCCCCC--CCCCCCCccEEEEcCCCCC-cccHHHHHHHHHHHHh--cCCCeEEEEEee-cCCchHHHHHH
Q 021691          186 GGTTVKSMTLHWNQDD--FPYIVDTFDVIVASDCTFF-KEFHKDLARIIKFLLK--KVGPSEALFFSP-KRGDSLDKFLE  259 (309)
Q Consensus       186 ~~~~v~~~~l~w~~~~--~~~~~~~fDvIi~~d~ly~-~~~~~~ll~~l~~lLk--~~G~~~~ii~~~-~r~~~~~~f~~  259 (309)
                        .++++...|.....  ......+||+|+. |+.|. ..+...+++.+.+..+  ++|  .+++=.| ......+.|.+
T Consensus       137 --~~~~V~~~D~~~~L~~l~~~~~~fdLVfi-DPPYe~k~~~~~vl~~L~~~~~r~~~G--i~v~WYPi~~~~~~~~~~~  211 (283)
T 2oo3_A          137 --KKVYVNHTDGVSKLNALLPPPEKRGLIFI-DPSYERKEEYKEIPYAIKNAYSKFSTG--LYCVWYPVVNKAWTEQFLR  211 (283)
T ss_dssp             --SCEEEECSCHHHHHHHHCSCTTSCEEEEE-CCCCCSTTHHHHHHHHHHHHHHHCTTS--EEEEEEEESSHHHHHHHHH
T ss_pred             --CcEEEEeCcHHHHHHHhcCCCCCccEEEE-CCCCCCCcHHHHHHHHHHHhCccCCCe--EEEEEEeccchHHHHHHHH
Confidence              34555544321110  0112346999999 99898 5688888888877544  455  4433333 34455678999


Q ss_pred             HHHhCCCeEEEEec
Q 021691          260 EIEGNHLHFSIIEN  273 (309)
Q Consensus       260 ~~~~~G~~~~~~~~  273 (309)
                      .+++.|..+-.+|.
T Consensus       212 ~l~~~~~~~l~~el  225 (283)
T 2oo3_A          212 KMREISSKSVRIEL  225 (283)
T ss_dssp             HHHHHCSSEEEEEE
T ss_pred             HHHhcCCCeEEEEE
Confidence            99877765444443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.12  E-value=1.7e-05  Score=73.20  Aligned_cols=125  Identities=14%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC--CCceEEEE
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG--GTTVKSMT  194 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~--~~~v~~~~  194 (309)
                      .|+...+..+    ...+|.+|||+.||.|.=+..+|.....+.|++.|+++.-+..+++|+...+....  ..++.+..
T Consensus       135 ~aS~l~~~~L----~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~  210 (359)
T 4fzv_A          135 AASLLPVLAL----GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTS  210 (359)
T ss_dssp             GGGHHHHHHH----CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEEC
T ss_pred             HHHHHHHHHh----CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEe
Confidence            5666666554    34578999999999998888888876667899999999999999999998776321  13455544


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCc-------------------------ccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFK-------------------------EFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~-------------------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      .|..... ....+.||.|+. |+.-..                         ..-..++....++|||||  .++++++.
T Consensus       211 ~D~~~~~-~~~~~~fD~VLl-DaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG--~LVYsTCS  286 (359)
T 4fzv_A          211 WDGRKWG-ELEGDTYDRVLV-DVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG--HVVYSTCS  286 (359)
T ss_dssp             CCGGGHH-HHSTTCEEEEEE-ECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEE--EEEEEESC
T ss_pred             Cchhhcc-hhccccCCEEEE-CCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCc--EEEEEeCC
Confidence            4322110 112468999998 322110                         012357778888999999  66666643

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.12  E-value=6.8e-06  Score=65.53  Aligned_cols=51  Identities=22%  Similarity=0.278  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCCC-hhhHHHHHhcCCcEEEEEcCCHHHHH
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGYG-LAGLVIAATTEALEVVISDGNPQVVD  172 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~GtG-~~~l~la~~~~~~~V~~tD~~~~~l~  172 (309)
                      -+.|++|+.++.  ..+.+|||+|||.| .++..|++.. +..|++||++|.+++
T Consensus        22 ~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~   73 (153)
T 2k4m_A           22 WNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG   73 (153)
T ss_dssp             HHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT
T ss_pred             HHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc
Confidence            356899987653  34579999999999 4999988743 568999999987766

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.10  E-value=7.4e-06  Score=73.03  Aligned_cols=131  Identities=15%  Similarity=0.044  Sum_probs=86.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhc-----CCcEEEEEcCCH--------------------------HHHHHHHHHHHhcc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATT-----EALEVVISDGNP--------------------------QVVDYIQRNVDANS  182 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~-----~~~~V~~tD~~~--------------------------~~l~~~~~n~~~n~  182 (309)
                      ..++|||+|+..|..++.+|..+     +..+|+++|..+                          ..++.+++|++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            34699999999999998887654     267899999531                          14677899999887


Q ss_pred             CCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--CchHHHHHHH
Q 021691          183 GAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--GDSLDKFLEE  260 (309)
Q Consensus       183 ~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--~~~~~~f~~~  260 (309)
                      +.  ..+++....+..+........+||+|.. |+=. -......++.+..+|++||   +++++...  +...+.+.+.
T Consensus       186 l~--~~~I~li~Gda~etL~~~~~~~~d~vfI-DaD~-y~~~~~~Le~~~p~L~pGG---iIv~DD~~~~~G~~~Av~Ef  258 (282)
T 2wk1_A          186 LL--DEQVRFLPGWFKDTLPTAPIDTLAVLRM-DGDL-YESTWDTLTNLYPKVSVGG---YVIVDDYMMCPPCKDAVDEY  258 (282)
T ss_dssp             CC--STTEEEEESCHHHHSTTCCCCCEEEEEE-CCCS-HHHHHHHHHHHGGGEEEEE---EEEESSCTTCHHHHHHHHHH
T ss_pred             CC--cCceEEEEeCHHHHHhhCCCCCEEEEEE-cCCc-cccHHHHHHHHHhhcCCCE---EEEEcCCCCCHHHHHHHHHH
Confidence            62  1456666554432222223468999998 5521 1234567888899999999   66666543  2233455556


Q ss_pred             HHhCCCeEEEE
Q 021691          261 IEGNHLHFSII  271 (309)
Q Consensus       261 ~~~~G~~~~~~  271 (309)
                      +++.|+.+...
T Consensus       259 ~~~~~i~~~i~  269 (282)
T 2wk1_A          259 RAKFDIADELI  269 (282)
T ss_dssp             HHHTTCCSCCE
T ss_pred             HHhcCCceEEE
Confidence            66777665433

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.88  E-value=0.0001  Score=65.30  Aligned_cols=146  Identities=13%  Similarity=0.021  Sum_probs=85.0

Q ss_pred             cccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC
Q 021691          105 CNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA  184 (309)
Q Consensus       105 ~~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~  184 (309)
                      .+..++|.. .=-++..|.+.... ..+.++.+||||||++|..+.+++...++.+|+|+|+...--+.     ...-.+
T Consensus        67 ~g~~~~g~y-~SR~~~KL~ei~~~-~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-----P~~~~q  139 (321)
T 3lkz_A           67 EGNVTGGHP-VSRGTAKLRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-----PQLVQS  139 (321)
T ss_dssp             HTCCSSCCC-SSTHHHHHHHHHHT-TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-----CCCCCB
T ss_pred             cCcCcCCCc-cchHHHHHHHHHHh-cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-----cchhhh
Confidence            345677876 77788889877766 56678889999999999999988888888899999975320000     000000


Q ss_pred             CCCCceEEEEe-eCCCCCCCCCCCCccEEEEcCCCCCccc----HHH---HHHHHHHHHhcC-CCeEEEEEeecCCchHH
Q 021691          185 FGGTTVKSMTL-HWNQDDFPYIVDTFDVIVASDCTFFKEF----HKD---LARIIKFLLKKV-GPSEALFFSPKRGDSLD  255 (309)
Q Consensus       185 ~~~~~v~~~~l-~w~~~~~~~~~~~fDvIi~~d~ly~~~~----~~~---ll~~l~~lLk~~-G~~~~ii~~~~r~~~~~  255 (309)
                      .+-.-|.+..- |.    ......++|+|+| |+--....    ...   .++.+.+.|+++ |.+.+=+++++.++ ..
T Consensus       140 l~w~lV~~~~~~Dv----~~l~~~~~D~ivc-DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~-v~  213 (321)
T 3lkz_A          140 YGWNIVTMKSGVDV----FYRPSECCDTLLC-DIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPK-VI  213 (321)
T ss_dssp             TTGGGEEEECSCCT----TSSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHH-HH
T ss_pred             cCCcceEEEeccCH----hhCCCCCCCEEEE-ECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChH-HH
Confidence            00011222211 11    1112266999999 65533222    111   556667889888 53333334444433 33


Q ss_pred             HHHHHHHh
Q 021691          256 KFLEEIEG  263 (309)
Q Consensus       256 ~f~~~~~~  263 (309)
                      ++++.++.
T Consensus       214 e~l~~lq~  221 (321)
T 3lkz_A          214 EKMELLQR  221 (321)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            56666654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.79  E-value=3.9e-05  Score=68.84  Aligned_cols=58  Identities=14%  Similarity=0.051  Sum_probs=46.5

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN  181 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n  181 (309)
                      .|.+.+..... .+|..|||+|||+|..++++++.  +.+++++|+++.+++.+++++...
T Consensus       223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            34444444322 47889999999999999997665  569999999999999999998764

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.78  E-value=9.7e-05  Score=68.40  Aligned_cols=114  Identities=11%  Similarity=0.042  Sum_probs=66.3

Q ss_pred             CCeEEEeCCCCChhhHHHHH--------hc-------CCcEEEEEcCCHHHHHHHHHHHHhccC-------C--CCCCce
Q 021691          135 SKRVIELGSGYGLAGLVIAA--------TT-------EALEVVISDGNPQVVDYIQRNVDANSG-------A--FGGTTV  190 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~--------~~-------~~~~V~~tD~~~~~l~~~~~n~~~n~~-------~--~~~~~v  190 (309)
                      +.+|+|||||+|..++.++.        .+       +.-+|...|.-...-..+=+.+....-       .  .....+
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            57899999999988887622        22       345788888655444433333322110       0  000111


Q ss_pred             EEEEeeCCCCCCCCCCCCccEEEEcCCCCCcc--------------------------------------cHHHHHHHHH
Q 021691          191 KSMTLHWNQDDFPYIVDTFDVIVASDCTFFKE--------------------------------------FHKDLARIIK  232 (309)
Q Consensus       191 ~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------------------~~~~ll~~l~  232 (309)
                      -+...--.-.....+.++||+|+++-++|+..                                      ++..+++...
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111100011224578999999999999955                                      4455688889


Q ss_pred             HHHhcCCCeEEEEEeecC
Q 021691          233 FLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       233 ~lLk~~G~~~~ii~~~~r  250 (309)
                      +.|+|||  .+++....+
T Consensus       213 ~eL~pGG--~mvl~~~gr  228 (374)
T 3b5i_A          213 AEVKRGG--AMFLVCLGR  228 (374)
T ss_dssp             HHEEEEE--EEEEEEEEC
T ss_pred             HHhCCCC--EEEEEEecC
Confidence            9999999  454444333

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.58  E-value=0.00026  Score=65.68  Aligned_cols=86  Identities=10%  Similarity=0.149  Sum_probs=48.6

Q ss_pred             CCeEEEeCCCCChhhHHHHHh-----------------cCCcEEEEEcCCH-------HHHHHHHHHHH-hccCCCCCCc
Q 021691          135 SKRVIELGSGYGLAGLVIAAT-----------------TEALEVVISDGNP-------QVVDYIQRNVD-ANSGAFGGTT  189 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~-----------------~~~~~V~~tD~~~-------~~l~~~~~n~~-~n~~~~~~~~  189 (309)
                      ..+|+|||||+|..++.+...                 .+.-+|+..|.-.       ..|...++.+. .++...  ..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~--~~  130 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKI--GS  130 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCT--TS
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCC--Cc
Confidence            468999999999998876654                 1345789999651       11122222221 122111  12


Q ss_pred             eEEEEeeCCCC-CCCCCCCCccEEEEcCCCCCccc
Q 021691          190 VKSMTLHWNQD-DFPYIVDTFDVIVASDCTFFKEF  223 (309)
Q Consensus       190 v~~~~l~w~~~-~~~~~~~~fDvIi~~d~ly~~~~  223 (309)
                      +-+... -+.- ....+.++||+|+++.++|+...
T Consensus       131 ~f~~gv-pgSFy~rlfp~~S~d~v~Ss~aLHWls~  164 (384)
T 2efj_A          131 CLIGAM-PGSFYSRLFPEESMHFLHSCYCLHWLSQ  164 (384)
T ss_dssp             EEEEEC-CSCTTSCCSCTTCEEEEEEESCTTBCSS
T ss_pred             eEEEec-chhhhhccCCCCceEEEEecceeeecCC
Confidence            222221 1111 12345789999999999999543

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.55  E-value=0.00088  Score=64.91  Aligned_cols=147  Identities=15%  Similarity=0.036  Sum_probs=87.8

Q ss_pred             CCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-------------CcEEEEEcCCHHHHHHH
Q 021691          108 DNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-------------ALEVVISDGNPQVVDYI  174 (309)
Q Consensus       108 ~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-------------~~~V~~tD~~~~~l~~~  174 (309)
                      +..|-++ =|  ..+++++........|.+|+|-.||+|.+-+.+.+...             ...++|.|.++.+...+
T Consensus       194 g~~Gqfy-TP--~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la  270 (530)
T 3ufb_A          194 GDSGEFY-TP--RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLV  270 (530)
T ss_dssp             SSCCCCC-CC--HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHH
T ss_pred             CcCceEC-Cc--HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHH
Confidence            4456653 34  34555665555556788999999999988766554321             24699999999999999


Q ss_pred             HHHHHhccCCCCCCceEEEEeeCCCCCC-----CCCCCCccEEEEcCCCCCcc----------------cHHHHHHHHHH
Q 021691          175 QRNVDANSGAFGGTTVKSMTLHWNQDDF-----PYIVDTFDVIVASDCTFFKE----------------FHKDLARIIKF  233 (309)
Q Consensus       175 ~~n~~~n~~~~~~~~v~~~~l~w~~~~~-----~~~~~~fDvIi~~d~ly~~~----------------~~~~ll~~l~~  233 (309)
                      +.|+...+...  .++     .+++...     .....+||+|+++.++-...                .--.++..+.+
T Consensus       271 ~mNl~lhg~~~--~~I-----~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~  343 (530)
T 3ufb_A          271 QMNLLLHGLEY--PRI-----DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMR  343 (530)
T ss_dssp             HHHHHHHTCSC--CEE-----ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHH
T ss_pred             HHHHHhcCCcc--ccc-----cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHH
Confidence            99999888742  122     2222211     11235799999977653211                11234566667


Q ss_pred             HHh-------cCCCeEEEEEee--cCCchHHHHHHHHHhC
Q 021691          234 LLK-------KVGPSEALFFSP--KRGDSLDKFLEEIEGN  264 (309)
Q Consensus       234 lLk-------~~G~~~~ii~~~--~r~~~~~~f~~~~~~~  264 (309)
                      .|+       ++|+..+|+-..  .+......+.+.+-+.
T Consensus       344 ~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~  383 (530)
T 3ufb_A          344 KLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKN  383 (530)
T ss_dssp             HBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred             HhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhc
Confidence            776       578443333321  1333334565555444

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.55  E-value=0.00097  Score=61.33  Aligned_cols=119  Identities=13%  Similarity=0.097  Sum_probs=70.2

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      +.+|++||||||++|..+..++++  +.+|+++|..+ |-.    .+..+      ..|....-|...  ......+||+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~-l~~----~l~~~------~~V~~~~~d~~~--~~~~~~~~D~  273 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGP-MAQ----SLMDT------GQVTWLREDGFK--FRPTRSNISW  273 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSC-CCH----HHHTT------TCEEEECSCTTT--CCCCSSCEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhh-cCh----hhccC------CCeEEEeCcccc--ccCCCCCcCE
Confidence            457999999999999999998886  56999999754 111    11111      345554443222  2223468999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee--c--CCchH----HHHHHHHHhCCCeEE
Q 021691          212 IVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP--K--RGDSL----DKFLEEIEGNHLHFS  269 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~--~--r~~~~----~~f~~~~~~~G~~~~  269 (309)
                      |+| |+...+   ......+.+++..+....+++.-.  .  +....    ..+.+.++..|+...
T Consensus       274 vvs-Dm~~~p---~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~  335 (375)
T 4auk_A          274 MVC-DMVEKP---AKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQ  335 (375)
T ss_dssp             EEE-CCSSCH---HHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             EEE-cCCCCh---HHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchh
Confidence            999 665543   455666666666653323443221  1  11222    234455677787643

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.54  E-value=0.00053  Score=59.67  Aligned_cols=139  Identities=12%  Similarity=0.006  Sum_probs=77.2

Q ss_pred             ccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC----cEEEEEcCCHHHHHHHHHHHHhc
Q 021691          106 NIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA----LEVVISDGNPQVVDYIQRNVDAN  181 (309)
Q Consensus       106 ~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~----~~V~~tD~~~~~l~~~~~n~~~n  181 (309)
                      +..++|.. .=.|+..|.+.-... -+.+|.+|+||||+.|.-+..+++..+.    +.|+++|+ +           ..
T Consensus        47 g~~~~g~y-RSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----------~~  112 (269)
T 2px2_A           47 GNKVGGHP-VSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----------EE  112 (269)
T ss_dssp             ---CCSCC-SSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----------CC
T ss_pred             CCCcCCCc-ccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----------cC
Confidence            34566764 667788888766664 5567999999999999999998776222    24555552 0           01


Q ss_pred             cCCC---CCCceEEEEe-eCCCCCCCCCCCCccEEEEcCCCCCcc----cHH---HHHHHHHHHHhcCC-CeEEEEEeec
Q 021691          182 SGAF---GGTTVKSMTL-HWNQDDFPYIVDTFDVIVASDCTFFKE----FHK---DLARIIKFLLKKVG-PSEALFFSPK  249 (309)
Q Consensus       182 ~~~~---~~~~v~~~~l-~w~~~~~~~~~~~fDvIi~~d~ly~~~----~~~---~ll~~l~~lLk~~G-~~~~ii~~~~  249 (309)
                      .+..   +-.-+.+... |..+    ....++|+|+| |.--...    +..   ..+..+.++|+++| .+.+=++.+ 
T Consensus       113 P~~~~~~Gv~~i~~~~G~Df~~----~~~~~~DvVLS-DMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg-  186 (269)
T 2px2_A          113 PMLMQSYGWNIVTMKSGVDVFY----KPSEISDTLLC-DIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP-  186 (269)
T ss_dssp             CCCCCSTTGGGEEEECSCCGGG----SCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT-
T ss_pred             CCcccCCCceEEEeeccCCccC----CCCCCCCEEEe-CCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC-
Confidence            1100   0011122212 3322    12357999999 5433321    111   14667778999999 443333331 


Q ss_pred             CCchHHHHHHHHHhC
Q 021691          250 RGDSLDKFLEEIEGN  264 (309)
Q Consensus       250 r~~~~~~f~~~~~~~  264 (309)
                      ....+.++++.+++.
T Consensus       187 ~~~~~~~~l~~lk~~  201 (269)
T 2px2_A          187 YMPKVIEKLESLQRR  201 (269)
T ss_dssp             TSHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHH
Confidence            124455666677665

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.52  E-value=0.00011  Score=67.78  Aligned_cols=131  Identities=17%  Similarity=0.152  Sum_probs=80.3

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh-ccCCCC---CCceEEEEeeCCCCC--CCCCCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA-NSGAFG---GTTVKSMTLHWNQDD--FPYIVD  207 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~-n~~~~~---~~~v~~~~l~w~~~~--~~~~~~  207 (309)
                      +.++||=||.|.|.....+.+. +..+|+.+|+++.+++.+++.+.. ++..+.   ..++++..-|.-...  ......
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            4689999999999999887775 568999999999999999986532 111111   123444333221100  001235


Q ss_pred             CccEEEEcCCCCCc-----------ccHHHHHHHHHHHHhcCCCeEEEEEe--ecCCchHHHHHHHHHhCCCeE
Q 021691          208 TFDVIVASDCTFFK-----------EFHKDLARIIKFLLKKVGPSEALFFS--PKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       208 ~fDvIi~~d~ly~~-----------~~~~~ll~~l~~lLk~~G~~~~ii~~--~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      +||+||. |+.-..           -.-..+++.+++.|+++|  .++..+  +.....+..+.+.+++....+
T Consensus       284 ~yDvIIv-Dl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~G--Vlv~Q~~s~~~~~~~~~i~~tl~~vF~~v  354 (381)
T 3c6k_A          284 EFDYVIN-DLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDG--KYFTQGNCVNLTEALSLYEEQLGRLYCPV  354 (381)
T ss_dssp             CEEEEEE-ECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEE--EEEEEEEETTCHHHHHHHHHHHTTSSSCE
T ss_pred             ceeEEEE-CCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCC--EEEEecCCCcchhHHHHHHHHHHHhCCcc
Confidence            7999998 543210           112456788999999999  333322  222344556677777764444

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.46  E-value=9e-05  Score=65.64  Aligned_cols=50  Identities=14%  Similarity=0.013  Sum_probs=41.9

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      -+.......+|..++|.+||.|..+..+++.  ..+|+++|.++.+++.+++
T Consensus        13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~   62 (285)
T 1wg8_A           13 EALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG   62 (285)
T ss_dssp             HHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence            3333334557889999999999999999987  5699999999999999987

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.45  E-value=0.00023  Score=62.48  Aligned_cols=60  Identities=13%  Similarity=0.014  Sum_probs=46.0

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG  183 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~  183 (309)
                      .|.+.+.... ..+|..|||.+||+|..++++++.  +.+++++|+++.+++.+++++..+++
T Consensus       200 ~l~~~~i~~~-~~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          200 DLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             HHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            3444444332 247889999999999999986664  57999999999999999999987764

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.31  E-value=0.00033  Score=64.43  Aligned_cols=109  Identities=12%  Similarity=0.058  Sum_probs=67.7

Q ss_pred             CCeEEEeCCCCChhhHHHHHh----------------cCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          135 SKRVIELGSGYGLAGLVIAAT----------------TEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~----------------~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ..+|+||||++|..++.+...                .+.-+|++.|.-......+-+.+.....  ....+-+... -+
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~--~~~~~f~~gv-pg  128 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND--VDGVCFINGV-PG  128 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS--CTTCEEEEEE-ES
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc--cCCCEEEEec-ch
Confidence            468999999999777653332                2335799999877666666655443110  0012222221 11


Q ss_pred             C-CCCCCCCCCccEEEEcCCCCCccc---------------------------------HHHHHHHHHHHHhcCCCeEEE
Q 021691          199 Q-DDFPYIVDTFDVIVASDCTFFKEF---------------------------------HKDLARIIKFLLKKVGPSEAL  244 (309)
Q Consensus       199 ~-~~~~~~~~~fDvIi~~d~ly~~~~---------------------------------~~~ll~~l~~lLk~~G~~~~i  244 (309)
                      . -....+.+++|+|+++.++|+...                                 +..+++...+-|+|||  .++
T Consensus       129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG--~mv  206 (359)
T 1m6e_X          129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG--RMV  206 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC--EEE
T ss_pred             hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--eEE
Confidence            1 112345789999999999998443                                 2345888899999999  444


Q ss_pred             EEee
Q 021691          245 FFSP  248 (309)
Q Consensus       245 i~~~  248 (309)
                      +...
T Consensus       207 l~~~  210 (359)
T 1m6e_X          207 LTIL  210 (359)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.30  E-value=0.001  Score=60.92  Aligned_cols=124  Identities=19%  Similarity=0.145  Sum_probs=76.1

Q ss_pred             CeEEEeCCCCChhhHHHHHhcC--CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC-CCCccEE
Q 021691          136 KRVIELGSGYGLAGLVIAATTE--ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI-VDTFDVI  212 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~--~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~-~~~fDvI  212 (309)
                      .+|+||.||+|.+++.+... |  ...|+++|.++.+++..+.|.....         +...|......... ...+|+|
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~~~~---------~~~~Di~~~~~~~~~~~~~D~l   72 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFPHTQ---------LLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTTSC---------EECSCGGGCCHHHHHHHCCSEE
T ss_pred             CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhccccc---------cccCCHHHccHhHcCcCCcCEE
Confidence            58999999999999987665 4  3479999999999999998864221         11111111100000 1268999


Q ss_pred             EEcCCCCCc----------ccHHHHHHHHHHHHhcCC--CeEEEEEe-ec---CCchHHHHHHHHHhCCCeEEE
Q 021691          213 VASDCTFFK----------EFHKDLARIIKFLLKKVG--PSEALFFS-PK---RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       213 i~~d~ly~~----------~~~~~ll~~l~~lLk~~G--~~~~ii~~-~~---r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      ++..+...-          +....|+..+.++++.-.  + .++++. ..   ...+++.+.+.+++.|+.+..
T Consensus        73 ~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P-~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~  145 (343)
T 1g55_A           73 LMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLP-KYILLENVKGFEVSSTRDLLIQTIENCGFQYQE  145 (343)
T ss_dssp             EECCC------------------CHHHHHHHHGGGCSSCC-SEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             EEcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCC-CEEEEeCCccccCHHHHHHHHHHHHHCCCeeEE
Confidence            997663221          112346666667776543  3 344442 22   346778899999999998754

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.30  E-value=0.0018  Score=58.79  Aligned_cols=125  Identities=15%  Similarity=0.139  Sum_probs=78.1

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ..+.+|+||.||+|.+++.+.. .|...|.++|.++.+++..+.|......    ..+       ...... ....+|+|
T Consensus         9 ~~~~~~~dLFaG~Gg~~~g~~~-aG~~~v~~~e~d~~a~~t~~~N~~~~~~----~Di-------~~~~~~-~~~~~D~l   75 (327)
T 2c7p_A            9 LTGLRFIDLFAGLGGFRLALES-CGAECVYSNEWDKYAQEVYEMNFGEKPE----GDI-------TQVNEK-TIPDHDIL   75 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHH-TTCEEEEEECCCHHHHHHHHHHHSCCCB----SCG-------GGSCGG-GSCCCSEE
T ss_pred             cCCCcEEEECCCcCHHHHHHHH-CCCeEEEEEeCCHHHHHHHHHHcCCCCc----CCH-------HHcCHh-hCCCCCEE
Confidence            4567999999999999998655 4677789999999999999988643210    111       111101 11358999


Q ss_pred             EEcCCCCCc----------ccHHHHHHHHHHHHhcCCCeEEEEEeec------CCchHHHHHHHHHhCCCeEEE
Q 021691          213 VASDCTFFK----------EFHKDLARIIKFLLKKVGPSEALFFSPK------RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       213 i~~d~ly~~----------~~~~~ll~~l~~lLk~~G~~~~ii~~~~------r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      ++..+...-          +....|+..+.++++.-.+..+++-...      ....++.+.+.+++.|+.+..
T Consensus        76 ~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~  149 (327)
T 2c7p_A           76 CAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA  149 (327)
T ss_dssp             EEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred             EECCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEE
Confidence            997654331          1122356666666554333233333322      134677888999999987643

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.26  E-value=0.0014  Score=60.82  Aligned_cols=122  Identities=13%  Similarity=-0.026  Sum_probs=75.4

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC------CCCCc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY------IVDTF  209 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~------~~~~f  209 (309)
                      .+|+||.||+|.+++.+... |...|.++|+++.+++..+.|....         .+...|........      ....+
T Consensus         3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~~~~---------~~~~~DI~~~~~~~~~~~~~~~~~~   72 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINFPRS---------LHVQEDVSLLNAEIIKGFFKNDMPI   72 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHCTTS---------EEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhCCCC---------ceEecChhhcCHHHHHhhcccCCCe
Confidence            48999999999999987664 5556789999999999988875321         11122221111000      13579


Q ss_pred             cEEEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeec------CCchHHHHHHHHHhCCCeE
Q 021691          210 DVIVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPK------RGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       210 DvIi~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~------r~~~~~~f~~~~~~~G~~~  268 (309)
                      |+|++..+...-         +....|+..+.++++.-.+..+++-...      ....++.+. .+.+.|+.+
T Consensus        73 D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A           73 DGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             CEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred             eEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence            999997764321         2234566666666654433333332221      123566777 889999887

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.89  E-value=0.00027  Score=79.81  Aligned_cols=102  Identities=21%  Similarity=0.195  Sum_probs=50.1

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcC-----CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTE-----ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVD  207 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~-----~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~  207 (309)
                      +..+|||+|+|+|.....+...++     ..+++.+|+++...+.++++++.-.       +..  -.|+.... .....
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d-------i~~--~~~d~~~~~~~~~~ 1310 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH-------VTQ--GQWDPANPAPGSLG 1310 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT-------EEE--ECCCSSCCCC----
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc-------ccc--ccccccccccCCCC
Confidence            467999999999876554444433     2479999999888877776654321       221  12322111 11345


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      .||+||+++++|...+....+..++++|+|+|  .+++.
T Consensus      1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G--~l~~~ 1347 (2512)
T 2vz8_A         1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGG--FLLLH 1347 (2512)
T ss_dssp             -CCEEEEECC--------------------CC--EEEEE
T ss_pred             ceeEEEEcccccccccHHHHHHHHHHhcCCCc--EEEEE
Confidence            79999999999988888899999999999999  44443

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.84  E-value=0.0016  Score=55.95  Aligned_cols=141  Identities=18%  Similarity=0.134  Sum_probs=82.0

Q ss_pred             CCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691          109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGT  188 (309)
Q Consensus       109 ~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~  188 (309)
                      ++|.. .=.++..|.+..... .+.++.+|+||||++|..+.+++...++.+|+++|..+.--+.     ...-...+-.
T Consensus        55 ~~g~y-rSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-----P~~~~s~gwn  127 (267)
T 3p8z_A           55 TTHHA-VSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-----PVPMSTYGWN  127 (267)
T ss_dssp             CSSCC-SSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-----CCCCCCTTTT
T ss_pred             cCCCc-cchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-----cchhhhcCcC
Confidence            33654 677788888877766 6778899999999999999998888888899999975421100     0000001112


Q ss_pred             ceEEEEe-eCCCCCCCCCCCCccEEEEcCCCCCccc----HHH---HHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHH
Q 021691          189 TVKSMTL-HWNQDDFPYIVDTFDVIVASDCTFFKEF----HKD---LARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEE  260 (309)
Q Consensus       189 ~v~~~~l-~w~~~~~~~~~~~fDvIi~~d~ly~~~~----~~~---ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~  260 (309)
                      .|++... |.    ......++|+|+| |+--....    ...   .++.+.+.|++ |.+.+=++++..++ ..++++.
T Consensus       128 ~v~fk~gvDv----~~~~~~~~Dtllc-DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~-v~e~l~~  200 (267)
T 3p8z_A          128 IVKLMSGKDV----FYLPPEKCDTLLC-DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPT-VIEHLER  200 (267)
T ss_dssp             SEEEECSCCG----GGCCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHH-HHHHHHH
T ss_pred             ceEEEeccce----eecCCccccEEEE-ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChh-HHHHHHH
Confidence            3333332 21    1122367999999 54333222    112   44555677777 53333334444433 3466666


Q ss_pred             HHh
Q 021691          261 IEG  263 (309)
Q Consensus       261 ~~~  263 (309)
                      ++.
T Consensus       201 lq~  203 (267)
T 3p8z_A          201 LQR  203 (267)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.77  E-value=0.0099  Score=53.89  Aligned_cols=124  Identities=11%  Similarity=-0.003  Sum_probs=79.2

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcC--CcEE-EEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-CCCCcc
Q 021691          135 SKRVIELGSGYGLAGLVIAATTE--ALEV-VISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY-IVDTFD  210 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~--~~~V-~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~-~~~~fD  210 (309)
                      ..+|+||.||.|.+++.+... |  ...| .++|+++.+.+..+.|....-.          ..|..+..... ....+|
T Consensus        10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~~~~----------~~DI~~~~~~~i~~~~~D   78 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKEEVQ----------VKNLDSISIKQIESLNCN   78 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCCCCB----------CCCTTTCCHHHHHHTCCC
T ss_pred             CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCCCcc----------cCChhhcCHHHhccCCCC
Confidence            348999999999999886554 4  2456 7999999999999988643211          01111111000 112689


Q ss_pred             EEEEcCCCCCc------------ccHHHHHHHHHH-HHhcC--CCeEEEEEeec----CCchHHHHHHHHHhCCCeEEE
Q 021691          211 VIVASDCTFFK------------EFHKDLARIIKF-LLKKV--GPSEALFFSPK----RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       211 vIi~~d~ly~~------------~~~~~ll~~l~~-lLk~~--G~~~~ii~~~~----r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      +++++.+...-            +....|+..+.+ +++.-  .+ .++++..-    ...+++.+.+.+++.|+.+..
T Consensus        79 il~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P-~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~  156 (327)
T 3qv2_A           79 TWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKP-KHIFIENVPLFKESLVFKEIYNILIKNQYYIKD  156 (327)
T ss_dssp             EEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCC-SEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCC-CEEEEEchhhhcChHHHHHHHHHHHhCCCEEEE
Confidence            99997754322            233467777777 87754  22 45554432    245678889999999998764

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.64  E-value=0.0035  Score=57.48  Aligned_cols=45  Identities=9%  Similarity=0.240  Sum_probs=40.0

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHH
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNV  178 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~  178 (309)
                      ++..|||+|.|.|.++..|+....+++|+++++++.++..+++..
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            358999999999999999988655679999999999999998865

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.58  E-value=0.0077  Score=56.33  Aligned_cols=48  Identities=13%  Similarity=0.131  Sum_probs=42.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHH-HhcCC-cEEEEEcCCHHHHHHHHHHHHh
Q 021691          133 FRSKRVIELGSGYGLAGLVIA-ATTEA-LEVVISDGNPQVVDYIQRNVDA  180 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la-~~~~~-~~V~~tD~~~~~l~~~~~n~~~  180 (309)
                      .++..|+|+||+.|..++.++ +..+. ++|++.|.+|...+.+++|++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            478899999999999999877 45543 7999999999999999999998

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.45  E-value=0.011  Score=53.64  Aligned_cols=125  Identities=12%  Similarity=0.055  Sum_probs=78.1

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-CCCCccEE
Q 021691          136 KRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY-IVDTFDVI  212 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~-~~~~fDvI  212 (309)
                      .+|+||.||.|.+++.+... |.  .-|.++|+++.+.+..+.|.....         +..-|+.+..... ....+|++
T Consensus         4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~~~~---------~~~~DI~~~~~~~~~~~~~D~l   73 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFPETN---------LLNRNIQQLTPQVIKKWNVDTI   73 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTTSC---------EECCCGGGCCHHHHHHTTCCEE
T ss_pred             CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCCCCc---------eeccccccCCHHHhccCCCCEE
Confidence            37999999999999887654 33  458899999999988888753221         1111221111100 11268999


Q ss_pred             EEcCCCCCc----------ccHHHHHHHHHHHHhcCCCeEEEEEeec-C---CchHHHHHHHHHhCCCeEEE
Q 021691          213 VASDCTFFK----------EFHKDLARIIKFLLKKVGPSEALFFSPK-R---GDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       213 i~~d~ly~~----------~~~~~ll~~l~~lLk~~G~~~~ii~~~~-r---~~~~~~f~~~~~~~G~~~~~  270 (309)
                      +++.+...-          +....|+..+.++++.-.+..++++... .   ..+++.+.+.+++.|+.+..
T Consensus        74 ~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~  145 (333)
T 4h0n_A           74 LMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFIYQE  145 (333)
T ss_dssp             EECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             EecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEE
Confidence            997765431          1233467777777765431244554432 2   34578899999999998764

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.40  E-value=0.042  Score=48.70  Aligned_cols=122  Identities=20%  Similarity=0.189  Sum_probs=68.3

Q ss_pred             HHHHHhh-CcCcCCCCeEEEeCCCC--C-hh-hHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          122 LAFFSLS-HADMFRSKRVIELGSGY--G-LA-GLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       122 La~~l~~-~~~~~~g~~VLELG~Gt--G-~~-~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      |.+|+-. ......|.+|||||||+  | .+ +..+....+. +.|+++|+++-..           .    ..+ ....
T Consensus        96 lcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------d----a~~-~IqG  159 (344)
T 3r24_A           96 LCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------D----ADS-TLIG  159 (344)
T ss_dssp             HHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------S----SSE-EEES
T ss_pred             HHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------C----CCe-EEEc
Confidence            6777743 33556799999999853  2 22 3344444443 4999999876220           1    111 1333


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCC------------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHh
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFF------------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEG  263 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~------------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~  263 (309)
                      |...   .....+||+|++ |..-.            ....+.++..+.+.|++||.   ++.-...+.. .+++..+++
T Consensus       160 D~~~---~~~~~k~DLVIS-DMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGs---FvVKVFQGsg-~~~L~~lrk  231 (344)
T 3r24_A          160 DCAT---VHTANKWDLIIS-DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGS---IAVKITEHSW-NADLYKLMG  231 (344)
T ss_dssp             CGGG---EEESSCEEEEEE-CCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEE---EEEEECSSSC-CHHHHHHHT
T ss_pred             cccc---cccCCCCCEEEe-cCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCE---EEEEEecCCC-HHHHHHHHh
Confidence            3211   112478999999 43221            12467778888999999993   3333333333 244555555


Q ss_pred             CCCeE
Q 021691          264 NHLHF  268 (309)
Q Consensus       264 ~G~~~  268 (309)
                       .|..
T Consensus       232 -~F~~  235 (344)
T 3r24_A          232 -HFSW  235 (344)
T ss_dssp             -TEEE
T ss_pred             -hCCe
Confidence             4554

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.40  E-value=0.027  Score=50.61  Aligned_cols=122  Identities=15%  Similarity=0.107  Sum_probs=77.0

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      .+||||-||.|.+++.+-. .|-.-|.++|+++.+.+..+.|...          .+...|..+-... .-...|++++.
T Consensus         1 mkvidLFsG~GG~~~G~~~-aG~~~v~a~e~d~~a~~ty~~N~~~----------~~~~~DI~~i~~~-~~~~~D~l~gg   68 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQK-AGFRIICANEYDKSIWKTYESNHSA----------KLIKGDISKISSD-EFPKCDGIIGG   68 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHH-TTCEEEEEEECCTTTHHHHHHHCCS----------EEEESCGGGCCGG-GSCCCSEEECC
T ss_pred             CeEEEeCcCccHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHHCCC----------CcccCChhhCCHh-hCCcccEEEec
Confidence            4799999999999988644 4666678999999999988887421          1112222211111 12468999997


Q ss_pred             CCCCC----------cccHHHHHHHHHHHHhcCCCeEEEEEee-------cCCchHHHHHHHHHhCCCeEEE
Q 021691          216 DCTFF----------KEFHKDLARIIKFLLKKVGPSEALFFSP-------KRGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       216 d~ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~~-------~r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      .+...          .+....|+..+.++++.-.+ .++++..       .....+..+.+.+.+.|+.+..
T Consensus        69 pPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~P-k~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~  139 (331)
T 3ubt_Y           69 PPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKP-IFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHI  139 (331)
T ss_dssp             CCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCC-SEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCC-eEEEeeeecccccccccchhhhhhhhhccCCcEEEE
Confidence            75432          12334566666666654433 3444432       2345678888999999987654

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.16  E-value=0.035  Score=49.72  Aligned_cols=132  Identities=12%  Similarity=0.094  Sum_probs=71.4

Q ss_pred             CeEEEeCCCCChhhHHHHH----hcCCc--EEEEEcCCH--------HHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          136 KRVIELGSGYGLAGLVIAA----TTEAL--EVVISDGNP--------QVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~----~~~~~--~V~~tD~~~--------~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      -+|||+|-|||+..++...    ..+..  +++.+|..+        +....+...+..........++.. .+-+++..
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L-~l~~GDa~  176 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSL-KVLLGDAR  176 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEE-EEEESCHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEE-EEEechHH
Confidence            4799999999987654332    23333  456666421        112222222222211111233433 23333321


Q ss_pred             --CCCC-CCCccEEEEcCCCCCccc----HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEecc
Q 021691          202 --FPYI-VDTFDVIVASDCTFFKEF----HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       202 --~~~~-~~~fDvIi~~d~ly~~~~----~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                        .+.. ..+||+|+. |.+--...    -+.+++.+.++++++|  .  +.+....   ..+...+.++||.|+.+..+
T Consensus       177 ~~l~~l~~~~~Da~fl-DgFsP~kNPeLWs~e~f~~l~~~~~pgg--~--laTYtaa---g~VRR~L~~aGF~V~k~~G~  248 (308)
T 3vyw_A          177 KRIKEVENFKADAVFH-DAFSPYKNPELWTLDFLSLIKERIDEKG--Y--WVSYSSS---LSVRKSLLTLGFKVGSSREI  248 (308)
T ss_dssp             HHGGGCCSCCEEEEEE-CCSCTTTSGGGGSHHHHHHHHTTEEEEE--E--EEESCCC---HHHHHHHHHTTCEEEEEECC
T ss_pred             HHHhhhcccceeEEEe-CCCCcccCcccCCHHHHHHHHHHhCCCc--E--EEEEeCc---HHHHHHHHHCCCEEEecCCC
Confidence              1222 347999988 65322222    2579999999999998  2  2232221   34567899999999988765


Q ss_pred             Cc
Q 021691          275 NA  276 (309)
Q Consensus       275 ~~  276 (309)
                      ..
T Consensus       249 g~  250 (308)
T 3vyw_A          249 GR  250 (308)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.61  E-value=0.0078  Score=55.33  Aligned_cols=103  Identities=16%  Similarity=0.195  Sum_probs=67.8

Q ss_pred             HHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-
Q 021691          125 FSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-  202 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-  202 (309)
                      .......+.+|.+||=.|+|. |..++.+|+..|+.+|+++|.+++-++.+++    .+..      .+  ++....+. 
T Consensus       173 ~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~------~v--i~~~~~~~~  240 (370)
T 4ej6_A          173 HGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT------AT--VDPSAGDVV  240 (370)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS------EE--ECTTSSCHH
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC------EE--ECCCCcCHH
Confidence            333445667899999999985 8888889998887799999999988877765    2321      01  11111110 


Q ss_pred             ----C---CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          203 ----P---YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       203 ----~---~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                          .   ...+.+|+|+-+  .    .....+....++|+++|  .++++.
T Consensus       241 ~~i~~~~~~~~gg~Dvvid~--~----G~~~~~~~~~~~l~~~G--~vv~~G  284 (370)
T 4ej6_A          241 EAIAGPVGLVPGGVDVVIEC--A----GVAETVKQSTRLAKAGG--TVVILG  284 (370)
T ss_dssp             HHHHSTTSSSTTCEEEEEEC--S----CCHHHHHHHHHHEEEEE--EEEECS
T ss_pred             HHHHhhhhccCCCCCEEEEC--C----CCHHHHHHHHHHhccCC--EEEEEe
Confidence                0   112379999863  1    12456788888999998  555543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=94.93  E-value=0.022  Score=51.64  Aligned_cols=50  Identities=16%  Similarity=0.163  Sum_probs=41.4

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHH
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQ  175 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~  175 (309)
                      +.......+|..++|..+|.|..+..+++.. +..+|+++|.++++++.++
T Consensus        49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            3333345678999999999999999988876 4579999999999999884

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.90  E-value=0.037  Score=50.59  Aligned_cols=93  Identities=14%  Similarity=0.228  Sum_probs=60.9

Q ss_pred             CCCeEEEeC-CC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC----CCCCCC
Q 021691          134 RSKRVIELG-SG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD----FPYIVD  207 (309)
Q Consensus       134 ~g~~VLELG-~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~----~~~~~~  207 (309)
                      +|.+||=.| +| .|...+.+|+..++.+|+++|.+++-++.+++    .+..    .+    ++..++.    ......
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad----~v----i~~~~~~~~~v~~~~~~  238 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH----HV----IDHSKPLAAEVAALGLG  238 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS----EE----ECTTSCHHHHHHTTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC----EE----EeCCCCHHHHHHHhcCC
Confidence            688999998 66 48888888887567799999999887777754    2321    11    1111100    011234


Q ss_pred             CccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          208 TFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      .+|+|+-+-      .-+..+....++|+++|  .++.+
T Consensus       239 g~Dvvid~~------g~~~~~~~~~~~l~~~G--~iv~~  269 (363)
T 4dvj_A          239 APAFVFSTT------HTDKHAAEIADLIAPQG--RFCLI  269 (363)
T ss_dssp             CEEEEEECS------CHHHHHHHHHHHSCTTC--EEEEC
T ss_pred             CceEEEECC------CchhhHHHHHHHhcCCC--EEEEE
Confidence            799988631      23456788889999999  45444

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.63  E-value=0.36  Score=44.32  Aligned_cols=122  Identities=16%  Similarity=0.102  Sum_probs=72.8

Q ss_pred             CCCceeecccHHHHHHHHhhCc-CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEE-EEcCCHHHHHHHHHHHHhccCCCC
Q 021691          109 NTGLVCHWPSEDVLAFFSLSHA-DMFRSKRVIELGSGYGLAGLVIAATTEALEVV-ISDGNPQVVDYIQRNVDANSGAFG  186 (309)
Q Consensus       109 ~tG~~~~W~sa~~La~~l~~~~-~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~-~tD~~~~~l~~~~~n~~~n~~~~~  186 (309)
                      +..+. -|+|+.-+   ++++. +...+.+||-+|.+.|.++..++..    .++ .+| +--....++.|+..|++.. 
T Consensus        16 ~~~l~-a~da~d~~---ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~----~~~~~~d-s~~~~~~~~~n~~~~~~~~-   85 (375)
T 4dcm_A           16 VNPLQ-AWEAADEY---LLQQLDDTEIRGPVLILNDAFGALSCALAEH----KPYSIGD-SYISELATRENLRLNGIDE-   85 (375)
T ss_dssp             SCSCC-SCCHHHHH---HHHTTTTCCCCSCEEEECCSSSHHHHHTGGG----CCEEEES-CHHHHHHHHHHHHHTTCCG-
T ss_pred             CCCCC-ccchHHHH---HHHhhhhccCCCCEEEECCCCCHHHHhhccC----CceEEEh-HHHHHHHHHHHHHHcCCCc-
Confidence            34555 89998653   33332 2225678999999999998876543    233 346 6666678899999998842 


Q ss_pred             CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          187 GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       187 ~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                       ..+..  ++..    ......||+|+.- ..-........+..+...|++++  .+++....+
T Consensus        86 -~~~~~--~~~~----~~~~~~~~~v~~~-lpk~~~~l~~~L~~l~~~l~~~~--~i~~~g~~~  139 (375)
T 4dcm_A           86 -SSVKF--LDST----ADYPQQPGVVLIK-VPKTLALLEQQLRALRKVVTSDT--RIIAGAKAR  139 (375)
T ss_dssp             -GGSEE--EETT----SCCCSSCSEEEEE-CCSCHHHHHHHHHHHHTTCCTTS--EEEEEEEGG
T ss_pred             -cceEe--cccc----cccccCCCEEEEE-cCCCHHHHHHHHHHHHhhCCCCC--EEEEEeccc
Confidence             12333  2221    1234679999882 22233334445555555566666  555555444

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=94.61  E-value=0.15  Score=48.60  Aligned_cols=129  Identities=14%  Similarity=0.104  Sum_probs=74.5

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE---EEeeCCCC-CC--------
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS---MTLHWNQD-DF--------  202 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~---~~l~w~~~-~~--------  202 (309)
                      ..+|+||-||.|.+++.+.. .|..-|.++|.++.+.+..+.|......    ..+..   ..++.... ..        
T Consensus        88 ~~~viDLFaG~GGlslG~~~-aG~~~v~avE~d~~A~~ty~~N~~~~p~----~~~~~~DI~~i~~~~~~~~~~~~~~~~  162 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFES-IGGQCVFTSEWNKHAVRTYKANHYCDPA----THHFNEDIRDITLSHQEGVSDEAAAEH  162 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHT-TTEEEEEEECCCHHHHHHHHHHSCCCTT----TCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHhcccCCC----cceeccchhhhhhccccccchhhHHhh
Confidence            45899999999999988644 4555689999999999888877521100    00100   01111000 00        


Q ss_pred             -CCCCCCccEEEEcCCCCCcc-------------------cHHHHHHHHHHHHhcCCCeEEEEEe-ec------CCchHH
Q 021691          203 -PYIVDTFDVIVASDCTFFKE-------------------FHKDLARIIKFLLKKVGPSEALFFS-PK------RGDSLD  255 (309)
Q Consensus       203 -~~~~~~fDvIi~~d~ly~~~-------------------~~~~ll~~l~~lLk~~G~~~~ii~~-~~------r~~~~~  255 (309)
                       ......+|+|++..+.-.-+                   ....|+..+.++++.-.+ .++++. ..      +..+++
T Consensus       163 i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rP-k~fvlENV~gl~s~~~g~~f~  241 (482)
T 3me5_A          163 IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP-AMFVLENVKNLKSHDKGKTFR  241 (482)
T ss_dssp             HHHHSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCC-SEEEEEEETTTTTGGGGHHHH
T ss_pred             hhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCC-cEEEEeCcHHHhcccCCcHHH
Confidence             00124689999977554311                   111356666666654333 344443 22      234678


Q ss_pred             HHHHHHHhCCCeEE
Q 021691          256 KFLEEIEGNHLHFS  269 (309)
Q Consensus       256 ~f~~~~~~~G~~~~  269 (309)
                      .+.+.+++.|+.+.
T Consensus       242 ~i~~~L~~lGY~v~  255 (482)
T 3me5_A          242 IIMQTLDELGYDVA  255 (482)
T ss_dssp             HHHHHHHHTTEEET
T ss_pred             HHHHHHhcCCcEEE
Confidence            88999999998874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.56  E-value=0.085  Score=48.86  Aligned_cols=46  Identities=24%  Similarity=0.346  Sum_probs=39.5

Q ss_pred             CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      .+.+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-++.+++
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  256 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE  256 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            567899999999985 8888888998887799999999988887764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.26  E-value=0.062  Score=49.66  Aligned_cols=104  Identities=15%  Similarity=0.039  Sum_probs=65.8

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-C--
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-P--  203 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~--  203 (309)
                      ....+.+|.+||-+|||. |...+.+|+..++.+|+++|.+++-++.+++    .+.       .  .++....+. .  
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-------~--~i~~~~~~~~~~~  245 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF-------E--TIDLRNSAPLRDQ  245 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC-------E--EEETTSSSCHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC-------c--EEcCCCcchHHHH
Confidence            334567899999999985 8888888988877799999999987777653    221       1  123322221 0  


Q ss_pred             ----CCCCCccEEEEcCCCCC--------cccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          204 ----YIVDTFDVIVASDCTFF--------KEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       204 ----~~~~~fDvIi~~d~ly~--------~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                          .....||+|+-+-.-..        .......+....++|+++|  .++++
T Consensus       246 ~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG--~iv~~  298 (398)
T 2dph_A          246 IDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGG--AIGIP  298 (398)
T ss_dssp             HHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEE--EEECC
T ss_pred             HHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCC--EEEEe
Confidence                01236999986432110        0012346778888999998  45443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.11  E-value=0.14  Score=45.97  Aligned_cols=107  Identities=12%  Similarity=0.087  Sum_probs=69.5

Q ss_pred             HHHHHHHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          119 EDVLAFFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       119 a~~La~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      +...+.+.+......+|++||=.|+|. |...+.+|+..++ +|+++|.+++-++.+++    .+..    .    .++.
T Consensus       151 ~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~----~i~~  217 (340)
T 3s2e_A          151 AGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE----V----AVNA  217 (340)
T ss_dssp             HHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS----E----EEET
T ss_pred             hhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC----E----EEeC
Confidence            333445555566777899999999985 8888889998766 99999999988877654    2321    1    1222


Q ss_pred             CCCCCC----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          198 NQDDFP----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       198 ~~~~~~----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ...+..    ...+.+|+|+-+-.      ....++...++|+++|  .++.+
T Consensus       218 ~~~~~~~~~~~~~g~~d~vid~~g------~~~~~~~~~~~l~~~G--~iv~~  262 (340)
T 3s2e_A          218 RDTDPAAWLQKEIGGAHGVLVTAV------SPKAFSQAIGMVRRGG--TIALN  262 (340)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEESSC------CHHHHHHHHHHEEEEE--EEEEC
T ss_pred             CCcCHHHHHHHhCCCCCEEEEeCC------CHHHHHHHHHHhccCC--EEEEe
Confidence            221110    01136888876311      2456788888999998  45444

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.00  E-value=0.11  Score=47.31  Aligned_cols=108  Identities=11%  Similarity=0.069  Sum_probs=69.6

Q ss_pred             HHHHHHHh-hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          120 DVLAFFSL-SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       120 ~~La~~l~-~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      ...+.... ....+.+|++||-+|+|. |...+.+|+..++.+|+++|.+++-++.+++.    +..    .  +  ++.
T Consensus       175 ~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~--v--i~~  242 (371)
T 1f8f_A          175 IQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT----H--V--INS  242 (371)
T ss_dssp             HHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS----E--E--EET
T ss_pred             HHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC----E--E--ecC
Confidence            33444434 445677899999999985 88888888888777899999999888877642    321    1  1  122


Q ss_pred             CCCCC-----CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          198 NQDDF-----PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       198 ~~~~~-----~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ...+.     ....+.+|+|+-+-.      .+..+....++|+++|  .++++.
T Consensus       243 ~~~~~~~~~~~~~~gg~D~vid~~g------~~~~~~~~~~~l~~~G--~iv~~G  289 (371)
T 1f8f_A          243 KTQDPVAAIKEITDGGVNFALESTG------SPEILKQGVDALGILG--KIAVVG  289 (371)
T ss_dssp             TTSCHHHHHHHHTTSCEEEEEECSC------CHHHHHHHHHTEEEEE--EEEECC
T ss_pred             CccCHHHHHHHhcCCCCcEEEECCC------CHHHHHHHHHHHhcCC--EEEEeC
Confidence            11110     001136999986421      2456778888999998  555544

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.98  E-value=0.11  Score=47.99  Aligned_cols=105  Identities=17%  Similarity=0.053  Sum_probs=67.4

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-C--
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-P--  203 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~--  203 (309)
                      ....+.+|.+||=+|+|. |+.++.+|+..|+.+|+++|.+++-++.+++    .+.       .  .++....+. .  
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa-------~--~i~~~~~~~~~~~  245 (398)
T 1kol_A          179 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF-------E--IADLSLDTPLHEQ  245 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC-------E--EEETTSSSCHHHH
T ss_pred             HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC-------c--EEccCCcchHHHH
Confidence            334567899999999985 8888899998887789999999988877754    222       1  122222110 0  


Q ss_pred             ----CCCCCccEEEEcCCCC---------CcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          204 ----YIVDTFDVIVASDCTF---------FKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       204 ----~~~~~fDvIi~~d~ly---------~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                          .....+|+|+-+-.-.         +.......+....++|+++|  .++++.
T Consensus       246 v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--~iv~~G  300 (398)
T 1kol_A          246 IAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAG--KIGIPG  300 (398)
T ss_dssp             HHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEE--EEEECS
T ss_pred             HHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCC--EEEEec
Confidence                0123699998642211         11123346778889999998  555543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.81  E-value=0.06  Score=48.52  Aligned_cols=59  Identities=17%  Similarity=0.122  Sum_probs=44.4

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhcc
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANS  182 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~  182 (309)
                      .|.+.+.... ..+|..|||-.||+|..++++.+.  +.+.+++|+++..++.+++++...+
T Consensus       240 ~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          240 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            3444444322 246889999999999999885554  5799999999999999988765443

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=93.71  E-value=0.34  Score=44.99  Aligned_cols=47  Identities=9%  Similarity=-0.099  Sum_probs=36.0

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcC-CcE----EEEEcCCHHHHHHHHHHHHh
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTE-ALE----VVISDGNPQVVDYIQRNVDA  180 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~-~~~----V~~tD~~~~~l~~~~~n~~~  180 (309)
                      +..+|+||-||.|..++.+-.... ..-    |.++|.++.++..-+.|...
T Consensus         9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A            9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            345999999999998888655411 123    88899999999988888653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.67  E-value=0.096  Score=47.15  Aligned_cols=60  Identities=10%  Similarity=0.114  Sum_probs=44.7

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCH---HHHHHHHHHHHhcc
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNP---QVVDYIQRNVDANS  182 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~---~~l~~~~~n~~~n~  182 (309)
                      ..|.+.+.... ..+|..|||-.||+|..++++.+.  +.+.+++|+++   ..++.+++++...+
T Consensus       229 ~~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          229 AAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            44555555432 246889999999999999986665  67999999999   99999988876554

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.41  E-value=0.12  Score=46.85  Aligned_cols=100  Identities=14%  Similarity=0.083  Sum_probs=65.1

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+.+......+.+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-++.+++.    +..      .+  ++....
T Consensus       154 ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~------~v--i~~~~~  221 (352)
T 3fpc_A          154 TGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT------DI--INYKNG  221 (352)
T ss_dssp             HHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC------EE--ECGGGS
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc------eE--EcCCCc
Confidence            344444555677899999999985 88888899988777899999999877777652    321      11  111111


Q ss_pred             CC------CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          201 DF------PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       201 ~~------~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +.      ......+|+|+-+  .-.    +..+....++|+++|
T Consensus       222 ~~~~~v~~~t~g~g~D~v~d~--~g~----~~~~~~~~~~l~~~G  260 (352)
T 3fpc_A          222 DIVEQILKATDGKGVDKVVIA--GGD----VHTFAQAVKMIKPGS  260 (352)
T ss_dssp             CHHHHHHHHTTTCCEEEEEEC--SSC----TTHHHHHHHHEEEEE
T ss_pred             CHHHHHHHHcCCCCCCEEEEC--CCC----hHHHHHHHHHHhcCC
Confidence            10      0112369999853  222    245677788899988

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.23  E-value=0.15  Score=46.34  Aligned_cols=101  Identities=13%  Similarity=0.166  Sum_probs=64.8

Q ss_pred             hhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC---CCC
Q 021691          127 LSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ---DDF  202 (309)
Q Consensus       127 ~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~---~~~  202 (309)
                      .....+.+|.+||-+|+|. |...+.+|+..++.+|+++|.+++-++.+++    .+..    .  +  ++...   .+.
T Consensus       164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~--v--i~~~~~~~~~~  231 (356)
T 1pl8_A          164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD----L--V--LQISKESPQEI  231 (356)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS----E--E--EECSSCCHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----E--E--EcCcccccchH
Confidence            3334567899999999985 8888888988877799999999987777653    2321    1  1  11110   000


Q ss_pred             -----CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          203 -----PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       203 -----~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                           ......+|+|+-+-  -    .+..+....++|+++|  .++.+.
T Consensus       232 ~~~i~~~~~~g~D~vid~~--g----~~~~~~~~~~~l~~~G--~iv~~G  273 (356)
T 1pl8_A          232 ARKVEGQLGCKPEVTIECT--G----AEASIQAGIYATRSGG--TLVLVG  273 (356)
T ss_dssp             HHHHHHHHTSCCSEEEECS--C----CHHHHHHHHHHSCTTC--EEEECS
T ss_pred             HHHHHHHhCCCCCEEEECC--C----ChHHHHHHHHHhcCCC--EEEEEe
Confidence                 00014689998642  1    2345677788999999  555543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=92.71  E-value=0.18  Score=45.44  Aligned_cols=105  Identities=10%  Similarity=0.070  Sum_probs=67.9

Q ss_pred             HHHHhhCc--CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          123 AFFSLSHA--DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       123 a~~l~~~~--~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      |.+.....  ...+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-++.+++    .+..    .  +  ++...
T Consensus       158 a~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~----~--~--i~~~~  225 (345)
T 3jv7_A          158 PYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD----A--A--VKSGA  225 (345)
T ss_dssp             HHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS----E--E--EECST
T ss_pred             HHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC----E--E--EcCCC
Confidence            44444443  567899999999985 8888888988878899999999988877754    2331    1  1  11111


Q ss_pred             CCCC-----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          200 DDFP-----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       200 ~~~~-----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ....     .....+|+|+-+  .    .-+..++...++|+++|  .++++.
T Consensus       226 ~~~~~v~~~t~g~g~d~v~d~--~----G~~~~~~~~~~~l~~~G--~iv~~G  270 (345)
T 3jv7_A          226 GAADAIRELTGGQGATAVFDF--V----GAQSTIDTAQQVVAVDG--HISVVG  270 (345)
T ss_dssp             THHHHHHHHHGGGCEEEEEES--S----CCHHHHHHHHHHEEEEE--EEEECS
T ss_pred             cHHHHHHHHhCCCCCeEEEEC--C----CCHHHHHHHHHHHhcCC--EEEEEC
Confidence            0000     012368998863  1    12446788888999998  555443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.47  E-value=0.1  Score=51.92  Aligned_cols=132  Identities=13%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             CCeEEEeCCCCChhhHHHHHhc----------CC--cEEEEEcCCHHHHHHHHHHH--------------HhccCC----
Q 021691          135 SKRVIELGSGYGLAGLVIAATT----------EA--LEVVISDGNPQVVDYIQRNV--------------DANSGA----  184 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~----------~~--~~V~~tD~~~~~l~~~~~n~--------------~~n~~~----  184 (309)
                      .-+|+|+|-|+|+..+.+.+.+          +.  -+++.++..|-..+.+++.+              ......    
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            3589999999999888765542          11  46899998553333333321              111110    


Q ss_pred             ----CCCCceEEEEeeCCCCC--CCCC----CCCccEEEEcCCCC---Cccc-HHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          185 ----FGGTTVKSMTLHWNQDD--FPYI----VDTFDVIVASDCTF---FKEF-HKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       185 ----~~~~~v~~~~l~w~~~~--~~~~----~~~fDvIi~~d~ly---~~~~-~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                          +...++.. .+-+++..  .+..    ...+|.++. |.+-   +++. -..++..+.+++++++  .  +.+...
T Consensus       139 ~r~~~~~~~~~l-~l~~gd~~~~l~~~~~~~~~~~da~fl-D~f~p~~np~~w~~~~~~~l~~~~~~g~--~--~~t~~~  212 (689)
T 3pvc_A          139 HRILLADGAITL-DLWFGDVNTLLPTLDDSLNNQVDAWFL-DGFAPAKNPDMWNEQLFNAMARMTRPGG--T--FSTFTA  212 (689)
T ss_dssp             EEEEETTTTEEE-EEEESCHHHHGGGCCGGGTTCEEEEEE-CSSCC--CCTTCSHHHHHHHHHHEEEEE--E--EEESCC
T ss_pred             eEEEecCCcEEE-EEEccCHHHHHhhcccccCCceeEEEE-CCCCCCCChhhhhHHHHHHHHHHhCCCC--E--EEeccC
Confidence                01111221 12222211  1122    367999998 5431   1111 2678899999999987  2  222211


Q ss_pred             CchHHHHHHHHHhCCCeEEEEeccC
Q 021691          251 GDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       251 ~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                      .   ....+.+.++||.+.....+.
T Consensus       213 ~---~~vr~~l~~aGf~~~~~~~~~  234 (689)
T 3pvc_A          213 A---GFVRRGLQQAGFNVTKVKGFG  234 (689)
T ss_dssp             C---HHHHHHHHHTTCEEEEEECSS
T ss_pred             c---HHHHHHHHhCCeEEEeccCCC
Confidence            1   356678889999998876544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=92.39  E-value=0.16  Score=45.79  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=64.2

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +.+.+....+.+|.+||=+|+|. |...+.+|+..++ +|+++|.+++-++.+++    .+..    .+.      .+.+
T Consensus       165 a~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~v~------~~~~  229 (348)
T 3two_A          165 TYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK----HFY------TDPK  229 (348)
T ss_dssp             HHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS----EEE------SSGG
T ss_pred             HHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC----eec------CCHH
Confidence            34444445677899999999985 8888888888766 89999999887777654    3331    111      1111


Q ss_pred             CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                        .....+|+|+-+  .-..    ..+....++|+++|  .++.+.
T Consensus       230 --~~~~~~D~vid~--~g~~----~~~~~~~~~l~~~G--~iv~~G  265 (348)
T 3two_A          230 --QCKEELDFIIST--IPTH----YDLKDYLKLLTYNG--DLALVG  265 (348)
T ss_dssp             --GCCSCEEEEEEC--CCSC----CCHHHHHTTEEEEE--EEEECC
T ss_pred             --HHhcCCCEEEEC--CCcH----HHHHHHHHHHhcCC--EEEEEC
Confidence              112279999853  2222    13556667888888  455443

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=92.24  E-value=0.28  Score=44.95  Aligned_cols=105  Identities=21%  Similarity=0.221  Sum_probs=66.1

Q ss_pred             HHHHhhCcC-cCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC--
Q 021691          123 AFFSLSHAD-MFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN--  198 (309)
Q Consensus       123 a~~l~~~~~-~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~--  198 (309)
                      +........ +.+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-++.+++    .+..    .  +  ++..  
T Consensus       183 a~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~--v--i~~~~~  250 (380)
T 1vj0_A          183 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD----L--T--LNRRET  250 (380)
T ss_dssp             HHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS----E--E--EETTTS
T ss_pred             HHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc----E--E--Eecccc
Confidence            334444456 67899999999874 8888888988775799999999988777753    2321    1  1  1111  


Q ss_pred             -CCC----C-C-CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          199 -QDD----F-P-YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       199 -~~~----~-~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                       ..+    . . .....+|+|+-+-  -.    +..+....++|+++|  .++.+.
T Consensus       251 ~~~~~~~~v~~~~~g~g~Dvvid~~--g~----~~~~~~~~~~l~~~G--~iv~~G  298 (380)
T 1vj0_A          251 SVEERRKAIMDITHGRGADFILEAT--GD----SRALLEGSELLRRGG--FYSVAG  298 (380)
T ss_dssp             CHHHHHHHHHHHTTTSCEEEEEECS--SC----TTHHHHHHHHEEEEE--EEEECC
T ss_pred             CcchHHHHHHHHhCCCCCcEEEECC--CC----HHHHHHHHHHHhcCC--EEEEEe
Confidence             000    0 0 0123699998642  11    235677778899998  555543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.20  E-value=0.15  Score=46.29  Aligned_cols=107  Identities=16%  Similarity=0.103  Sum_probs=67.8

Q ss_pred             HHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE-----eeCC
Q 021691          125 FSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT-----LHWN  198 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~-----l~w~  198 (309)
                      +......+.+|.+||=+|+|. |...+.+|+..|+..|+++|.+++-++.+++. ....       +....     -+|.
T Consensus       170 ~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~-------~~~~~~~~~~~~~~  241 (363)
T 3m6i_A          170 AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEV-------VTHKVERLSAEESA  241 (363)
T ss_dssp             HHHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTC-------EEEECCSCCHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhc-------ccccccccchHHHH
Confidence            334445667899999999985 88888999988876799999999988888764 1111       11100     0000


Q ss_pred             CCCC-CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          199 QDDF-PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       199 ~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +.-. ......+|+|+-+  .-    -+..+....++|+++|  .++++.
T Consensus       242 ~~v~~~t~g~g~Dvvid~--~g----~~~~~~~~~~~l~~~G--~iv~~G  283 (363)
T 3m6i_A          242 KKIVESFGGIEPAVALEC--TG----VESSIAAAIWAVKFGG--KVFVIG  283 (363)
T ss_dssp             HHHHHHTSSCCCSEEEEC--SC----CHHHHHHHHHHSCTTC--EEEECC
T ss_pred             HHHHHHhCCCCCCEEEEC--CC----ChHHHHHHHHHhcCCC--EEEEEc
Confidence            0000 0113469999863  21    2346777888999999  555543

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=92.06  E-value=1.2  Score=44.73  Aligned_cols=43  Identities=16%  Similarity=0.064  Sum_probs=33.8

Q ss_pred             CeEEEeCCCCChhhHHHHHhcC-----CcEEEEEcCCHHHHHHHHHHH
Q 021691          136 KRVIELGSGYGLAGLVIAATTE-----ALEVVISDGNPQVVDYIQRNV  178 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~-----~~~V~~tD~~~~~l~~~~~n~  178 (309)
                      .+||||-||.|.+++-+....+     -.-+.++|.++.+++..+.|.
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            4899999999998877654311     135789999999999998884

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=91.91  E-value=0.28  Score=44.72  Aligned_cols=100  Identities=10%  Similarity=0.007  Sum_probs=64.9

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC--CCC--
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ--DDF--  202 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~--~~~--  202 (309)
                      ....+.+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-++.+++    .+..      .+  ++..+  .+.  
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~------~v--i~~~~~~~~~~~  252 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT------EC--LNPKDYDKPIYE  252 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS------EE--ECGGGCSSCHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc------EE--EecccccchHHH
Confidence            445677899999999984 8888888988877799999999887777653    2321      11  11111  000  


Q ss_pred             ---CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcC-CCeEEEEEe
Q 021691          203 ---PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKV-GPSEALFFS  247 (309)
Q Consensus       203 ---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~-G~~~~ii~~  247 (309)
                         ....+.+|+|+-+  .-    ....+....++|+++ |  .++.+.
T Consensus       253 ~i~~~t~gg~Dvvid~--~g----~~~~~~~~~~~l~~~~G--~iv~~G  293 (373)
T 1p0f_A          253 VICEKTNGGVDYAVEC--AG----RIETMMNALQSTYCGSG--VTVVLG  293 (373)
T ss_dssp             HHHHHTTSCBSEEEEC--SC----CHHHHHHHHHTBCTTTC--EEEECC
T ss_pred             HHHHHhCCCCCEEEEC--CC----CHHHHHHHHHHHhcCCC--EEEEEc
Confidence               0011379999863  21    145677788899999 8  455443

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=91.84  E-value=0.33  Score=44.30  Aligned_cols=100  Identities=11%  Similarity=0.059  Sum_probs=64.5

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC--CCCC-
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ--DDFP-  203 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~--~~~~-  203 (309)
                      ....+.+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-++.+++    .+..      .+  ++..+  .+.. 
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~------~v--i~~~~~~~~~~~  256 (376)
T 1e3i_A          189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT------DC--LNPRELDKPVQD  256 (376)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS------EE--ECGGGCSSCHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc------EE--EccccccchHHH
Confidence            345667899999999984 8888888998877799999999887777653    2321      11  11111  0000 


Q ss_pred             ----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcC-CCeEEEEEe
Q 021691          204 ----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKV-GPSEALFFS  247 (309)
Q Consensus       204 ----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~-G~~~~ii~~  247 (309)
                          ...+.+|+|+-+  .-    ....+....++|+++ |  .++++.
T Consensus       257 ~v~~~~~~g~Dvvid~--~G----~~~~~~~~~~~l~~~~G--~iv~~G  297 (376)
T 1e3i_A          257 VITELTAGGVDYSLDC--AG----TAQTLKAAVDCTVLGWG--SCTVVG  297 (376)
T ss_dssp             HHHHHHTSCBSEEEES--SC----CHHHHHHHHHTBCTTTC--EEEECC
T ss_pred             HHHHHhCCCccEEEEC--CC----CHHHHHHHHHHhhcCCC--EEEEEC
Confidence                001369999863  21    145677888899999 8  455443

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=91.77  E-value=0.39  Score=43.62  Aligned_cols=104  Identities=20%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             HHHHHh-hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          122 LAFFSL-SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       122 La~~l~-~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      .+.+.+ ....+.+|++||=+|+|. |...+.+|+..|+ +|+++|.+++-++.+++    .+..    .  +  ++-..
T Consensus       176 ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~--v--i~~~~  242 (363)
T 3uog_A          176 TAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA----LGAD----H--G--INRLE  242 (363)
T ss_dssp             HHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS----E--E--EETTT
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH----cCCC----E--E--EcCCc
Confidence            344444 445677899999999885 8888888888765 99999999887777654    2321    1  1  12111


Q ss_pred             CCCC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          200 DDFP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       200 ~~~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+..      .....+|+|+-+-.   .    ..+....++|+++|  .++++.
T Consensus       243 ~~~~~~v~~~~~g~g~D~vid~~g---~----~~~~~~~~~l~~~G--~iv~~G  287 (363)
T 3uog_A          243 EDWVERVYALTGDRGADHILEIAG---G----AGLGQSLKAVAPDG--RISVIG  287 (363)
T ss_dssp             SCHHHHHHHHHTTCCEEEEEEETT---S----SCHHHHHHHEEEEE--EEEEEC
T ss_pred             ccHHHHHHHHhCCCCceEEEECCC---h----HHHHHHHHHhhcCC--EEEEEe
Confidence            1100      01236999986422   1    23566778899998  555554

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=91.70  E-value=0.38  Score=42.83  Aligned_cols=107  Identities=14%  Similarity=0.196  Sum_probs=63.7

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeC-CC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELG-SG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG-~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      +.+...+.+......+.+|.+||=.| +| .|...+.+|+..++ +|++++ +++-++.+++    .+..    .    .
T Consensus       135 ~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~----lGa~----~----~  200 (321)
T 3tqh_A          135 PTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA----LGAE----Q----C  200 (321)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH----HTCS----E----E
T ss_pred             hhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH----cCCC----E----E
Confidence            33333455555556778899999997 66 49999999998766 899998 4443555543    3331    1    1


Q ss_pred             eeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          195 LHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       195 l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ++....+ .......+|+|+-+--      -+.+ ....++|+++|  .++.+
T Consensus       201 i~~~~~~~~~~~~~g~D~v~d~~g------~~~~-~~~~~~l~~~G--~iv~~  244 (321)
T 3tqh_A          201 INYHEEDFLLAISTPVDAVIDLVG------GDVG-IQSIDCLKETG--CIVSV  244 (321)
T ss_dssp             EETTTSCHHHHCCSCEEEEEESSC------HHHH-HHHGGGEEEEE--EEEEC
T ss_pred             EeCCCcchhhhhccCCCEEEECCC------cHHH-HHHHHhccCCC--EEEEe
Confidence            2222221 1111246899886311      1233 67778889988  45544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=91.68  E-value=0.22  Score=45.51  Aligned_cols=108  Identities=14%  Similarity=0.028  Sum_probs=68.4

Q ss_pred             HHHHHHHHh-hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          119 EDVLAFFSL-SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       119 a~~La~~l~-~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      +...+.+.. ....+.+|.+||=+|+|. |++.+.+|+..++.+|+++|.+++-++.+++    .+..      .+  ++
T Consensus       177 ~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~------~v--i~  244 (378)
T 3uko_A          177 GVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN------EF--VN  244 (378)
T ss_dssp             HHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC------EE--EC
T ss_pred             hHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc------EE--Ec
Confidence            333444433 445677899999999984 8888889998887799999999987776653    2321      11  11


Q ss_pred             CC--CCCC-----CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcC-CCeEEEEE
Q 021691          197 WN--QDDF-----PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKV-GPSEALFF  246 (309)
Q Consensus       197 w~--~~~~-----~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~-G~~~~ii~  246 (309)
                      ..  ..+.     ....+.+|+|+-+  .-    .+..+....++++++ |  .++++
T Consensus       245 ~~~~~~~~~~~i~~~~~gg~D~vid~--~g----~~~~~~~~~~~l~~g~G--~iv~~  294 (378)
T 3uko_A          245 PKDHDKPIQEVIVDLTDGGVDYSFEC--IG----NVSVMRAALECCHKGWG--TSVIV  294 (378)
T ss_dssp             GGGCSSCHHHHHHHHTTSCBSEEEEC--SC----CHHHHHHHHHTBCTTTC--EEEEC
T ss_pred             cccCchhHHHHHHHhcCCCCCEEEEC--CC----CHHHHHHHHHHhhccCC--EEEEE
Confidence            11  0110     0012379999863  11    245677888899996 7  44443

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=91.63  E-value=2.6  Score=37.94  Aligned_cols=111  Identities=14%  Similarity=0.083  Sum_probs=69.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC-----------------CCCCceEEEEee
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA-----------------FGGTTVKSMTLH  196 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~-----------------~~~~~v~~~~l~  196 (309)
                      +.+.|+.||||.......+....+...++=+|. |++++.=++.+..++..                 ....+......|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            357899999999988887766545567777885 88888877777665210                 001345555554


Q ss_pred             CCCC--------CCCCCCCCccEEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          197 WNQD--------DFPYIVDTFDVIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       197 w~~~--------~~~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      ..+.        ... ......++++-.+++.  .+....+++.+...+ ++|  .++++...
T Consensus       176 L~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~--~~v~~e~i  234 (334)
T 1rjd_A          176 LNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHG--LWISYDPI  234 (334)
T ss_dssp             TTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSE--EEEEEEEC
T ss_pred             CCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCc--EEEEEecc
Confidence            4431        111 2245677888666655  456677788887776 555  45555543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=91.63  E-value=0.47  Score=43.75  Aligned_cols=59  Identities=27%  Similarity=0.307  Sum_probs=38.0

Q ss_pred             HHHHHHHHhhC---cCcCCCCeEEEeCCCCChhhHHHHHhc-------CCcEEEEEcCCHHHHHHHHHH
Q 021691          119 EDVLAFFSLSH---ADMFRSKRVIELGSGYGLAGLVIAATT-------EALEVVISDGNPQVVDYIQRN  177 (309)
Q Consensus       119 a~~La~~l~~~---~~~~~g~~VLELG~GtG~~~l~la~~~-------~~~~V~~tD~~~~~l~~~~~n  177 (309)
                      ++.|+.|+.+.   ......-+|+|+|+|.|.+..-+.+.+       ...+++.+|.|+...+.=++.
T Consensus        62 Ge~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~  130 (387)
T 1zkd_A           62 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTL  130 (387)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHH
Confidence            46677776652   111223479999999998766544321       234899999999776644433

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=91.60  E-value=0.36  Score=44.00  Aligned_cols=100  Identities=15%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC--CCCC-
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ--DDFP-  203 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~--~~~~-  203 (309)
                      ....+.+|++||-+|+|. |...+.+|+..++.+|+++|.+++-++.+++    .+..      .+  ++..+  .+.. 
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~------~v--i~~~~~~~~~~~  253 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT------DF--VNPNDHSEPISQ  253 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC------EE--ECGGGCSSCHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc------eE--EeccccchhHHH
Confidence            345667899999999874 8888888888877799999999988777753    2321      11  11111  0000 


Q ss_pred             ----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcC-CCeEEEEEe
Q 021691          204 ----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKV-GPSEALFFS  247 (309)
Q Consensus       204 ----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~-G~~~~ii~~  247 (309)
                          ...+.+|+|+-+-.      ....+....++|+++ |  .++.+.
T Consensus       254 ~~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G--~iv~~G  294 (374)
T 1cdo_A          254 VLSKMTNGGVDFSLECVG------NVGVMRNALESCLKGWG--VSVLVG  294 (374)
T ss_dssp             HHHHHHTSCBSEEEECSC------CHHHHHHHHHTBCTTTC--EEEECS
T ss_pred             HHHHHhCCCCCEEEECCC------CHHHHHHHHHHhhcCCc--EEEEEc
Confidence                00136999986421      145677888899999 8  555443

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=91.54  E-value=0.43  Score=42.81  Aligned_cols=61  Identities=10%  Similarity=0.167  Sum_probs=42.5

Q ss_pred             CCCccEEEEcCCCCCcc---------------cHHHHHHHHHHHHhcCCCeEEEEEeecC--C-------chHHHHHHHH
Q 021691          206 VDTFDVIVASDCTFFKE---------------FHKDLARIIKFLLKKVGPSEALFFSPKR--G-------DSLDKFLEEI  261 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~---------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r--~-------~~~~~f~~~~  261 (309)
                      .++||+|++ |+.|...               .....+..+.++|+++|  .+++....+  .       ..+....+.+
T Consensus        31 ~~svDlI~t-DPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G--~i~i~~~d~~~~g~~~~~~~~~~~i~~~~  107 (323)
T 1boo_A           31 EESISLVMT-SPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDG--SFVVDFGGAYMKGVPARSIYNFRVLIRMI  107 (323)
T ss_dssp             SSCEEEEEE-CCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEE--EEEEEECCCEETTEEEECCHHHHHHHHHH
T ss_pred             CCCeeEEEE-CCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCc--EEEEEECCEecCCCcccccchHHHHHHHH
Confidence            468999999 6666543               46778889999999999  455543322  1       1345566777


Q ss_pred             HhCCCeEE
Q 021691          262 EGNHLHFS  269 (309)
Q Consensus       262 ~~~G~~~~  269 (309)
                      ++.||.+.
T Consensus       108 ~~~Gf~~~  115 (323)
T 1boo_A          108 DEVGFFLA  115 (323)
T ss_dssp             HTTCCEEE
T ss_pred             HhCCCEEE
Confidence            88998764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=91.20  E-value=0.36  Score=43.87  Aligned_cols=100  Identities=13%  Similarity=0.039  Sum_probs=64.8

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC--CCC--
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ--DDF--  202 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~--~~~--  202 (309)
                      ....+.+|.+||=+|+|. |...+.+|+..++.+|+++|.+++-++.+++    .+..    .  +  ++..+  .+.  
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~--v--i~~~~~~~~~~~  251 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT----E--C--INPQDFSKPIQE  251 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS----E--E--ECGGGCSSCHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----e--E--eccccccccHHH
Confidence            345667899999999974 8888888888877799999999988877763    2321    1  1  11111  000  


Q ss_pred             ---CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcC-CCeEEEEEe
Q 021691          203 ---PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKV-GPSEALFFS  247 (309)
Q Consensus       203 ---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~-G~~~~ii~~  247 (309)
                         ....+.+|+|+-+-  -    ....+....++|+++ |  .++.+.
T Consensus       252 ~v~~~~~~g~D~vid~~--g----~~~~~~~~~~~l~~~~G--~iv~~G  292 (373)
T 2fzw_A          252 VLIEMTDGGVDYSFECI--G----NVKVMRAALEACHKGWG--VSVVVG  292 (373)
T ss_dssp             HHHHHTTSCBSEEEECS--C----CHHHHHHHHHTBCTTTC--EEEECS
T ss_pred             HHHHHhCCCCCEEEECC--C----cHHHHHHHHHhhccCCc--EEEEEe
Confidence               00113699998642  1    145677888899999 8  555443

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.13  E-value=0.42  Score=43.48  Aligned_cols=100  Identities=11%  Similarity=0.040  Sum_probs=64.5

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC--CCC--
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ--DDF--  202 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~--~~~--  202 (309)
                      ....+.+|++||=+|+|. |...+.+|+..++.+|+++|.+++-++.+++    .+..      .+  ++..+  .+.  
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~------~v--i~~~~~~~~~~~  252 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT------EC--VNPQDYKKPIQE  252 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS------EE--ECGGGCSSCHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc------eE--ecccccchhHHH
Confidence            345667899999999874 8888888888877699999999887777653    2321      11  12211  000  


Q ss_pred             ---CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcC-CCeEEEEEe
Q 021691          203 ---PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKV-GPSEALFFS  247 (309)
Q Consensus       203 ---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~-G~~~~ii~~  247 (309)
                         ....+.+|+|+-+-  -    ....+....++|+++ |  .++.+.
T Consensus       253 ~~~~~~~~g~D~vid~~--g----~~~~~~~~~~~l~~~~G--~iv~~G  293 (374)
T 2jhf_A          253 VLTEMSNGGVDFSFEVI--G----RLDTMVTALSCCQEAYG--VSVIVG  293 (374)
T ss_dssp             HHHHHTTSCBSEEEECS--C----CHHHHHHHHHHBCTTTC--EEEECS
T ss_pred             HHHHHhCCCCcEEEECC--C----CHHHHHHHHHHhhcCCc--EEEEec
Confidence               00113699998642  1    145677788899999 8  555443

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=90.98  E-value=0.34  Score=43.69  Aligned_cols=104  Identities=15%  Similarity=0.163  Sum_probs=66.3

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +.+......+ +|++||-+|+|. |...+.+|+..++.+|+++|.+++-++.+++    .+..    .  +  ++....+
T Consensus       157 a~~~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~----~--~--~~~~~~~  223 (348)
T 2d8a_A          157 AVDTVLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGAD----Y--V--INPFEED  223 (348)
T ss_dssp             HHHHHTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCS----E--E--ECTTTSC
T ss_pred             HHHHHHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----E--E--ECCCCcC
Confidence            4444455566 999999999974 8888888888776689999999887777753    2221    1  1  1221111


Q ss_pred             CC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          202 FP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       202 ~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..      .....+|+|+-+-.      ....++...++|+++|  .++.+.
T Consensus       224 ~~~~v~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G--~iv~~g  267 (348)
T 2d8a_A          224 VVKEVMDITDGNGVDVFLEFSG------APKALEQGLQAVTPAG--RVSLLG  267 (348)
T ss_dssp             HHHHHHHHTTTSCEEEEEECSC------CHHHHHHHHHHEEEEE--EEEECC
T ss_pred             HHHHHHHHcCCCCCCEEEECCC------CHHHHHHHHHHHhcCC--EEEEEc
Confidence            00      01236999987422      1356777888899988  555543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=90.92  E-value=0.51  Score=42.37  Aligned_cols=103  Identities=14%  Similarity=0.117  Sum_probs=64.2

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +..........+|++||-.|+| .|...+.+|+..++ +|+++|.+++-++.+++    .+..      .  .++..+.+
T Consensus       153 a~~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~------~--~~d~~~~~  219 (339)
T 1rjw_A          153 TYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD------L--VVNPLKED  219 (339)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS------E--EECTTTSC
T ss_pred             HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC------E--EecCCCcc
Confidence            3333333456789999999997 47878888887765 99999999988777653    2321      1  12222111


Q ss_pred             CCC----CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          202 FPY----IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       202 ~~~----~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ...    ....+|+|+-+-.      ....++...++|+++|  .++.+
T Consensus       220 ~~~~~~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G--~~v~~  260 (339)
T 1rjw_A          220 AAKFMKEKVGGVHAAVVTAV------SKPAFQSAYNSIRRGG--ACVLV  260 (339)
T ss_dssp             HHHHHHHHHSSEEEEEESSC------CHHHHHHHHHHEEEEE--EEEEC
T ss_pred             HHHHHHHHhCCCCEEEECCC------CHHHHHHHHHHhhcCC--EEEEe
Confidence            000    0036899987421      1346777888899988  45443

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=90.89  E-value=0.31  Score=44.47  Aligned_cols=103  Identities=20%  Similarity=0.195  Sum_probs=62.5

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-
Q 021691          124 FFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-  201 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-  201 (309)
                      ...+....+.+|.+||-+|+|. |...+.+|+..++ +|+++|.+++-++.+++    .+..    .+    ++..+.+ 
T Consensus       184 ~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~----~v----i~~~~~~~  250 (369)
T 1uuf_A          184 YSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD----EV----VNSRNADE  250 (369)
T ss_dssp             HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS----EE----EETTCHHH
T ss_pred             HHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc----EE----eccccHHH
Confidence            3333334567899999999984 8888888888765 69999999988877764    2321    11    1111110 


Q ss_pred             CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .......+|+|+-+-  -..    ..++...++|+++|  .++.+.
T Consensus       251 ~~~~~~g~Dvvid~~--g~~----~~~~~~~~~l~~~G--~iv~~G  288 (369)
T 1uuf_A          251 MAAHLKSFDFILNTV--AAP----HNLDDFTTLLKRDG--TMTLVG  288 (369)
T ss_dssp             HHTTTTCEEEEEECC--SSC----CCHHHHHTTEEEEE--EEEECC
T ss_pred             HHHhhcCCCEEEECC--CCH----HHHHHHHHHhccCC--EEEEec
Confidence            001124799998642  222    13455667888888  454443

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=90.74  E-value=0.25  Score=43.87  Aligned_cols=103  Identities=11%  Similarity=0.079  Sum_probs=64.5

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      +.....|.+.+....+.+|.+||=+|+|. |...+.+|+..++ +|+++| +++-++.+++    .+..      .+.. 
T Consensus       125 ~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~----lGa~------~v~~-  191 (315)
T 3goh_A          125 PCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAK----RGVR------HLYR-  191 (315)
T ss_dssp             HHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHH----HTEE------EEES-
T ss_pred             ccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHH----cCCC------EEEc-
Confidence            33344555556556777899999999974 8888888998876 999999 8877777754    2321      1111 


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      +     .......+|+|+-+  .-.    +. +....++|+++|  .++.+
T Consensus       192 d-----~~~v~~g~Dvv~d~--~g~----~~-~~~~~~~l~~~G--~~v~~  228 (315)
T 3goh_A          192 E-----PSQVTQKYFAIFDA--VNS----QN-AAALVPSLKANG--HIICI  228 (315)
T ss_dssp             S-----GGGCCSCEEEEECC--------------TTGGGEEEEE--EEEEE
T ss_pred             C-----HHHhCCCccEEEEC--CCc----hh-HHHHHHHhcCCC--EEEEE
Confidence            1     11125679998752  221    11 245567889988  55554

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=90.67  E-value=0.53  Score=40.68  Aligned_cols=59  Identities=14%  Similarity=0.097  Sum_probs=40.4

Q ss_pred             CCCccEEEEcCCCCCcc---------------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691          206 VDTFDVIVASDCTFFKE---------------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~---------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~  269 (309)
                      .++||+|+. |+.|...               .....+..+.++|+++|  .+++..  .......+...+.+.||.+.
T Consensus        21 ~~~vdlI~~-DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g--~i~v~~--~d~~~~~~~~~~~~~gf~~~   94 (260)
T 1g60_A           21 NKSVQLAVI-DPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDG--SLYIFN--TPFNCAFICQYLVSKGMIFQ   94 (260)
T ss_dssp             TTCEEEEEE-CCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEE--EEEEEE--CHHHHHHHHHHHHHTTCEEE
T ss_pred             ccccCEEEE-CCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCe--EEEEEc--CcHHHHHHHHHHHhhcccee
Confidence            357999999 7777654               45677888899999999  454443  22223445667788888654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=90.59  E-value=0.41  Score=42.95  Aligned_cols=94  Identities=12%  Similarity=0.030  Sum_probs=57.9

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC---
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP---  203 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~---  203 (309)
                      ......+|.+||=+|+|. |.....+|+..++.+|+++|.+++-++.++.    .+..      .  .++..+.+..   
T Consensus       157 ~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~------~--~i~~~~~~~~~~v  224 (348)
T 4eez_A          157 KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGAD------V--TINSGDVNPVDEI  224 (348)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCS------E--EEEC-CCCHHHHH
T ss_pred             cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCe------E--EEeCCCCCHHHHh
Confidence            334567899999999985 6666777777778899999999876665553    2321      1  1122211110   


Q ss_pred             ---CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          204 ---YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       204 ---~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                         .....+|+++-.-      .-...+....++++++|
T Consensus       225 ~~~t~g~g~d~~~~~~------~~~~~~~~~~~~l~~~G  257 (348)
T 4eez_A          225 KKITGGLGVQSAIVCA------VARIAFEQAVASLKPMG  257 (348)
T ss_dssp             HHHTTSSCEEEEEECC------SCHHHHHHHHHTEEEEE
T ss_pred             hhhcCCCCceEEEEec------cCcchhheeheeecCCc
Confidence               1123466665421      12456677778889988

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=90.22  E-value=1.1  Score=38.97  Aligned_cols=135  Identities=13%  Similarity=0.047  Sum_probs=74.1

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHh-------cCCcEEEEEcC-----CHH-------------------HHHHHHHHHH--
Q 021691          133 FRSKRVIELGSGYGLAGLVIAAT-------TEALEVVISDG-----NPQ-------------------VVDYIQRNVD--  179 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~-------~~~~~V~~tD~-----~~~-------------------~l~~~~~n~~--  179 (309)
                      ++| .|+|+|+-.|...+.+|..       ....+|++.|.     .+.                   ..+.+++-+.  
T Consensus        69 vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           69 VPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             SCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            455 8999999999888776653       23478999992     210                   1122222221  


Q ss_pred             hcc--CCCCCCceEEEEeeCCCCCCC----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC---
Q 021691          180 ANS--GAFGGTTVKSMTLHWNQDDFP----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR---  250 (309)
Q Consensus       180 ~n~--~~~~~~~v~~~~l~w~~~~~~----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r---  250 (309)
                      .|.  +.....++.....+..+....    .+..+||+|.. |+= .-......++.+..+|++||   +++++...   
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~I-D~D-~Y~~t~~~le~~~p~l~~GG---vIv~DD~~~~~  222 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYF-DLD-LYEPTKAVLEAIRPYLTKGS---IVAFDELDNPK  222 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEE-CCC-CHHHHHHHHHHHGGGEEEEE---EEEESSTTCTT
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEE-cCc-ccchHHHHHHHHHHHhCCCc---EEEEcCCCCCC
Confidence            121  111124566555433221111    12357999988 541 11233456777888888988   77777553   


Q ss_pred             -CchHHHHHHHHHhCCCeEEEEec
Q 021691          251 -GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       251 -~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                       +.-.+.+.+.+.+.+.++.....
T Consensus       223 w~G~~~A~~ef~~~~~~~i~~~p~  246 (257)
T 3tos_A          223 WPGENIAMRKVLGLDHAPLRLLPG  246 (257)
T ss_dssp             CTHHHHHHHHHTCTTSSCCEECTT
T ss_pred             ChHHHHHHHHHHhhCCCeEEEccC
Confidence             22334555666667776655443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=90.16  E-value=0.44  Score=42.99  Aligned_cols=100  Identities=16%  Similarity=0.172  Sum_probs=63.6

Q ss_pred             hhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC-CCCC-
Q 021691          127 LSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ-DDFP-  203 (309)
Q Consensus       127 ~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~-~~~~-  203 (309)
                      .....+.+|++||-.|+|. |...+.+|+..++ +|+++|.+++-++.+++    .+..      .+  ++..+ .+.. 
T Consensus       161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~------~~--~~~~~~~~~~~  227 (352)
T 1e3j_A          161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD------VT--LVVDPAKEEES  227 (352)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS------EE--EECCTTTSCHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC------EE--EcCcccccHHH
Confidence            3334567899999999974 8888888888765 59999999988777753    2321      11  12211 1100 


Q ss_pred             C-----C---CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          204 Y-----I---VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       204 ~-----~---~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .     .   ...+|+|+-+-.      ....+....++|+++|  .++.+.
T Consensus       228 ~i~~~~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G--~iv~~G  271 (352)
T 1e3j_A          228 SIIERIRSAIGDLPNVTIDCSG------NEKCITIGINITRTGG--TLMLVG  271 (352)
T ss_dssp             HHHHHHHHHSSSCCSEEEECSC------CHHHHHHHHHHSCTTC--EEEECS
T ss_pred             HHHHHhccccCCCCCEEEECCC------CHHHHHHHHHHHhcCC--EEEEEe
Confidence            0     0   246999986421      1345677788999999  555544

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=90.10  E-value=3.4  Score=42.75  Aligned_cols=132  Identities=8%  Similarity=-0.064  Sum_probs=73.0

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE-----EeeCCCCCCC-C-CC
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM-----TLHWNQDDFP-Y-IV  206 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~-----~l~w~~~~~~-~-~~  206 (309)
                      ..+++||.||.|.+++.+... |. .-|.++|+++.+.+..+.|......-  ...+...     ..+....... . ..
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~p~~~~~--~~DI~~l~~~~~~~di~~~~~~~lp~~  616 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNNPGSTVF--TEDCNILLKLVMAGETTNSRGQRLPQK  616 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHCTTSEEE--CSCHHHHHHHHHHTCSBCTTCCBCCCT
T ss_pred             CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCCCCccc--cccHHHHhhhccchhhhhhhhhhcccC
Confidence            348999999999999887554 43 45789999999998888774321110  0000000     0000000000 1 12


Q ss_pred             CCccEEEEcCCCCCccc------------HHHHHHHHHHHHhcCCCeEEEEEe-ec------CCchHHHHHHHHHhCCCe
Q 021691          207 DTFDVIVASDCTFFKEF------------HKDLARIIKFLLKKVGPSEALFFS-PK------RGDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~------------~~~ll~~l~~lLk~~G~~~~ii~~-~~------r~~~~~~f~~~~~~~G~~  267 (309)
                      +.+|+|++..+.-.-+.            ...|+..+.++++.-.+ .++++. ..      ....+..+++.+.+.|+.
T Consensus       617 ~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rP-k~~llENV~glls~~~~~~~~~i~~~L~~lGY~  695 (1002)
T 3swr_A          617 GDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRP-RFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQ  695 (1002)
T ss_dssp             TTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCC-SEEEEEEEGGGGTTGGGHHHHHHHHHHHHHTCE
T ss_pred             CCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCC-CEEEEeccHHHhccCcchHHHHHHHHHHhcCCe
Confidence            47899999775432110            11244444455443322 344433 21      234677888889999998


Q ss_pred             EEE
Q 021691          268 FSI  270 (309)
Q Consensus       268 ~~~  270 (309)
                      +..
T Consensus       696 v~~  698 (1002)
T 3swr_A          696 CTF  698 (1002)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=90.03  E-value=0.34  Score=43.93  Aligned_cols=52  Identities=19%  Similarity=0.200  Sum_probs=40.1

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          124 FFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ...+....+.+|.+||-+|+|. |...+.+|+..++ +|+++|.+++-++.+++
T Consensus       169 ~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          169 YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK  221 (360)
T ss_dssp             HHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence            3444445667899999999974 8888888887765 79999998887777764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=89.78  E-value=3.1  Score=34.66  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=44.9

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCce-EEEEeeCCCCCCCCCCCC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTV-KSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v-~~~~l~w~~~~~~~~~~~  208 (309)
                      .+.|++||=.|+ +|.+|..+++.+  .+.+|++++.+++-++.+..    .       .+ .+...|.. +.....-..
T Consensus        18 ~l~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~-------~~~~~~~~Dl~-~~~~~~~~~   84 (236)
T 3e8x_A           18 YFQGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----R-------GASDIVVANLE-EDFSHAFAS   84 (236)
T ss_dssp             ---CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----T-------TCSEEEECCTT-SCCGGGGTT
T ss_pred             CcCCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----C-------CCceEEEcccH-HHHHHHHcC
Confidence            356899998886 565666555443  25699999998876554432    1       23 44555555 222222346


Q ss_pred             ccEEEEcCCCCC
Q 021691          209 FDVIVASDCTFF  220 (309)
Q Consensus       209 fDvIi~~d~ly~  220 (309)
                      +|+|+.+-....
T Consensus        85 ~D~vi~~ag~~~   96 (236)
T 3e8x_A           85 IDAVVFAAGSGP   96 (236)
T ss_dssp             CSEEEECCCCCT
T ss_pred             CCEEEECCCCCC
Confidence            899998765544

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=89.76  E-value=0.52  Score=42.25  Aligned_cols=102  Identities=14%  Similarity=0.124  Sum_probs=66.2

Q ss_pred             HhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-
Q 021691          126 SLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-  203 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-  203 (309)
                      ........+|++||=.|+|. |..++.+|+..++..++++|.+++-++.+++    .|..      .+  ++..+.+.. 
T Consensus       152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~------~~--i~~~~~~~~~  219 (346)
T 4a2c_A          152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM------QT--FNSSEMSAPQ  219 (346)
T ss_dssp             HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS------EE--EETTTSCHHH
T ss_pred             HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe------EE--EeCCCCCHHH
Confidence            33445667899999999985 8888888999888889999999987777664    3331      11  122111110 


Q ss_pred             -----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          204 -----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       204 -----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                           .....+|+|+-+  .    ..+..++...++++++|  .++++.
T Consensus       220 ~~~~~~~~~g~d~v~d~--~----G~~~~~~~~~~~l~~~G--~~v~~g  260 (346)
T 4a2c_A          220 MQSVLRELRFNQLILET--A----GVPQTVELAVEIAGPHA--QLALVG  260 (346)
T ss_dssp             HHHHHGGGCSSEEEEEC--S----CSHHHHHHHHHHCCTTC--EEEECC
T ss_pred             HHHhhcccCCccccccc--c----cccchhhhhhheecCCe--EEEEEe
Confidence                 012457887753  1    12456777788999998  555544

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=89.66  E-value=0.81  Score=40.56  Aligned_cols=91  Identities=10%  Similarity=0.120  Sum_probs=57.8

Q ss_pred             eEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          137 RVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       137 ~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      +||=.|+ | .|...+.+|+..++ +|+++|.+++-++.+++    .+..    .+ +..-+... ........+|+|+-
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~v-i~~~~~~~-~~~~~~~~~d~v~d  217 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS----LGAN----RI-LSRDEFAE-SRPLEKQLWAGAID  217 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTCS----EE-EEGGGSSC-CCSSCCCCEEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC----EE-EecCCHHH-HHhhcCCCccEEEE
Confidence            4999997 5 58999999998876 99999999988877764    2321    11 11111111 11112347998875


Q ss_pred             cCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          215 SDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       215 ~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +  .-     ...+....++|+++|  .++.+.
T Consensus       218 ~--~g-----~~~~~~~~~~l~~~G--~iv~~G  241 (324)
T 3nx4_A          218 T--VG-----DKVLAKVLAQMNYGG--CVAACG  241 (324)
T ss_dssp             S--SC-----HHHHHHHHHTEEEEE--EEEECC
T ss_pred             C--CC-----cHHHHHHHHHHhcCC--EEEEEe
Confidence            3  21     237788888999999  555543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=89.32  E-value=0.56  Score=42.13  Aligned_cols=98  Identities=10%  Similarity=0.021  Sum_probs=61.2

Q ss_pred             CcCCCCeEEEeCCCC-ChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE-eeCCCCCCCCCC
Q 021691          131 DMFRSKRVIELGSGY-GLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT-LHWNQDDFPYIV  206 (309)
Q Consensus       131 ~~~~g~~VLELG~Gt-G~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~-l~w~~~~~~~~~  206 (309)
                      .. +|.+||-+|+|. |...+.+|+..  ++ +|+++|.+++-++.+++    .+..   .-+.... -+|... .. ..
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~-~~-~g  236 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINK-LT-DG  236 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHH-HH-TT
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHH-hh-cC
Confidence            56 899999999974 88888888887  65 79999999988877764    2221   0000000 011000 00 12


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..+|+|+-+-.      .+..++...++|+++|  .++.+.
T Consensus       237 ~g~D~vid~~g------~~~~~~~~~~~l~~~G--~iv~~g  269 (344)
T 2h6e_A          237 LGASIAIDLVG------TEETTYNLGKLLAQEG--AIILVG  269 (344)
T ss_dssp             CCEEEEEESSC------CHHHHHHHHHHEEEEE--EEEECC
T ss_pred             CCccEEEECCC------ChHHHHHHHHHhhcCC--EEEEeC
Confidence            36999986421      1346778888999998  555443

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=89.25  E-value=0.65  Score=41.75  Aligned_cols=105  Identities=12%  Similarity=0.163  Sum_probs=64.3

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCC--CCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGS--GYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~--GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      -+.+......+.+|++||-.|+  |.|.....+++..++ +|+++|.+++.++.+++    .+..      .  .++..+
T Consensus       157 ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~------~--~~d~~~  223 (347)
T 2hcy_A          157 TVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE------V--FIDFTK  223 (347)
T ss_dssp             HHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC------E--EEETTT
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc------e--EEecCc
Confidence            3444555556778999999998  357777777776654 99999998877766553    2221      1  123321


Q ss_pred             -CCCCC-----CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          200 -DDFPY-----IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       200 -~~~~~-----~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                       .+...     ..+.+|+|+.+-.      ....++...++|+++|  .++.+.
T Consensus       224 ~~~~~~~~~~~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G--~iv~~g  269 (347)
T 2hcy_A          224 EKDIVGAVLKATDGGAHGVINVSV------SEAAIEASTRYVRANG--TTVLVG  269 (347)
T ss_dssp             CSCHHHHHHHHHTSCEEEEEECSS------CHHHHHHHTTSEEEEE--EEEECC
T ss_pred             cHhHHHHHHHHhCCCCCEEEECCC------cHHHHHHHHHHHhcCC--EEEEEe
Confidence             11000     0126899987532      2356777778888888  454443

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=89.13  E-value=0.73  Score=40.86  Aligned_cols=44  Identities=16%  Similarity=0.070  Sum_probs=35.4

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcE--EEEEcCCHHHHHHHHHHH
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALE--VVISDGNPQVVDYIQRNV  178 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~--V~~tD~~~~~l~~~~~n~  178 (309)
                      .+.+|+||-||.|.+++.+... |..-  |.++|+++.+.+..+.|.
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~   60 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH   60 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT
T ss_pred             CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC
Confidence            4569999999999999886553 4444  699999999998888774

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=89.05  E-value=0.72  Score=41.75  Aligned_cols=45  Identities=16%  Similarity=0.225  Sum_probs=37.1

Q ss_pred             cCcCCCCeEEEeCCCC-ChhhHHHHHhc-CCcEEEEEcCCHHHHHHHH
Q 021691          130 ADMFRSKRVIELGSGY-GLAGLVIAATT-EALEVVISDGNPQVVDYIQ  175 (309)
Q Consensus       130 ~~~~~g~~VLELG~Gt-G~~~l~la~~~-~~~~V~~tD~~~~~l~~~~  175 (309)
                      ..+.+|.+||=+|+|. |...+.+|+.. ++ +|+++|.+++-++.++
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~  228 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAE  228 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHH
Confidence            5667899999999974 78888888887 65 8999999988777775

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=88.08  E-value=0.84  Score=40.96  Aligned_cols=102  Identities=16%  Similarity=0.191  Sum_probs=63.9

Q ss_pred             HHHHHh-hCcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          122 LAFFSL-SHADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       122 La~~l~-~~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      .+.+.. ....+.+|++||=.|+ | .|...+.+|+..|+ +|+++|.+++-++.+++.    +..      .+.  +..
T Consensus       146 ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~------~v~--~~~  212 (342)
T 4eye_A          146 TMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD------IVL--PLE  212 (342)
T ss_dssp             HHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS------EEE--ESS
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc------EEe--cCc
Confidence            344444 4456778999999997 4 58888888888765 999999988877777642    321      111  111


Q ss_pred             CCCCC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          199 QDDFP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       199 ~~~~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                       .+..      .....+|+|+-+-.  .     ..+....++|+++|  .++.+
T Consensus       213 -~~~~~~v~~~~~~~g~Dvvid~~g--~-----~~~~~~~~~l~~~G--~iv~~  256 (342)
T 4eye_A          213 -EGWAKAVREATGGAGVDMVVDPIG--G-----PAFDDAVRTLASEG--RLLVV  256 (342)
T ss_dssp             -TTHHHHHHHHTTTSCEEEEEESCC---------CHHHHHHTEEEEE--EEEEC
T ss_pred             -hhHHHHHHHHhCCCCceEEEECCc--h-----hHHHHHHHhhcCCC--EEEEE
Confidence             1100      11236999986422  1     24567778889988  44443

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=87.91  E-value=0.76  Score=41.00  Aligned_cols=107  Identities=14%  Similarity=0.186  Sum_probs=67.0

Q ss_pred             HHHHHHHh-hCcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          120 DVLAFFSL-SHADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       120 ~~La~~l~-~~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      ...|.+.+ ....+.+|++||=.|+ | .|...+.+|+..++ +|+++|.+++-++.+.+.   .+..    .    .++
T Consensus       134 ~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~---~g~~----~----~~~  201 (336)
T 4b7c_A          134 GMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEE---LGFD----G----AID  201 (336)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---TCCS----E----EEE
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCC----E----EEE
Confidence            34455555 5567788999999998 4 58888888887765 999999998877666322   2221    1    122


Q ss_pred             CCCCCCC-----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          197 WNQDDFP-----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       197 w~~~~~~-----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ....+..     ...+.+|+|+-+--       ...+....++|+++|  .++.+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G--~iv~~G  248 (336)
T 4b7c_A          202 YKNEDLAAGLKRECPKGIDVFFDNVG-------GEILDTVLTRIAFKA--RIVLCG  248 (336)
T ss_dssp             TTTSCHHHHHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEE--EEEECC
T ss_pred             CCCHHHHHHHHHhcCCCceEEEECCC-------cchHHHHHHHHhhCC--EEEEEe
Confidence            2221110     01246999987422       136777788899998  555543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=87.79  E-value=1.3  Score=39.67  Aligned_cols=103  Identities=14%  Similarity=0.135  Sum_probs=64.4

Q ss_pred             HHHHhhC-cCcCCCCeEEEeCC--CCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          123 AFFSLSH-ADMFRSKRVIELGS--GYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       123 a~~l~~~-~~~~~g~~VLELG~--GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      +.+.... ..+.+|++||-.|+  |.|...+.+++..++ +|+++|.+++-++.+++    .+..    .  +  ++...
T Consensus       154 a~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~ga~----~--~--~d~~~  220 (343)
T 2eih_A          154 AWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA----LGAD----E--T--VNYTH  220 (343)
T ss_dssp             HHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS----E--E--EETTS
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC----E--E--EcCCc
Confidence            4444444 36678999999998  358888888887665 99999999988877753    2321    1  1  23222


Q ss_pred             CCCC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          200 DDFP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       200 ~~~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+..      .....+|+|+-+--   .    ..++...++|+++|  .++.+.
T Consensus       221 ~~~~~~~~~~~~~~~~d~vi~~~g---~----~~~~~~~~~l~~~G--~~v~~g  265 (343)
T 2eih_A          221 PDWPKEVRRLTGGKGADKVVDHTG---A----LYFEGVIKATANGG--RIAIAG  265 (343)
T ss_dssp             TTHHHHHHHHTTTTCEEEEEESSC---S----SSHHHHHHHEEEEE--EEEESS
T ss_pred             ccHHHHHHHHhCCCCceEEEECCC---H----HHHHHHHHhhccCC--EEEEEe
Confidence            2100      01246999987532   1    24566778888888  454443

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=87.67  E-value=1.1  Score=39.87  Aligned_cols=104  Identities=14%  Similarity=0.211  Sum_probs=63.4

Q ss_pred             HHHHHh-hCcCcCCCCeEEEeCC--CCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          122 LAFFSL-SHADMFRSKRVIELGS--GYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       122 La~~l~-~~~~~~~g~~VLELG~--GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      .|.+.. ....+.+|++||-.|+  |.|.....+++..++ +|+++|.+++.++.+++    .+..     .   .++..
T Consensus       132 ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~-----~---~~d~~  198 (333)
T 1v3u_A          132 TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD-----A---AFNYK  198 (333)
T ss_dssp             HHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS-----E---EEETT
T ss_pred             HHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCc-----E---EEecC
Confidence            344444 4456778999999998  357777777776655 99999999887776632    1221     1   12322


Q ss_pred             C-CCCC-----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          199 Q-DDFP-----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       199 ~-~~~~-----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      + .+..     ...+.+|+|+.+-.       ...+....++|+++|  .++++.
T Consensus       199 ~~~~~~~~~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G--~~v~~g  244 (333)
T 1v3u_A          199 TVNSLEEALKKASPDGYDCYFDNVG-------GEFLNTVLSQMKDFG--KIAICG  244 (333)
T ss_dssp             SCSCHHHHHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEE--EEEECC
T ss_pred             CHHHHHHHHHHHhCCCCeEEEECCC-------hHHHHHHHHHHhcCC--EEEEEe
Confidence            2 1100     01146999987532       134677778889988  555443

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=87.65  E-value=0.45  Score=44.53  Aligned_cols=61  Identities=21%  Similarity=0.185  Sum_probs=39.8

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc---C--CcEEEEEcCCHHHHHHHHHHHHh
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT---E--ALEVVISDGNPQVVDYIQRNVDA  180 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~---~--~~~V~~tD~~~~~l~~~~~n~~~  180 (309)
                      +.|+.|+.+.-.....-+|+|+|+|.|.+..-+...+   +  ..+++.+|.|+...+.-++.+..
T Consensus       123 e~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          123 QTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            4566665543221124689999999998765443322   1  34899999999887766666653

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=87.48  E-value=0.39  Score=43.19  Aligned_cols=102  Identities=19%  Similarity=0.231  Sum_probs=63.6

Q ss_pred             HHHHhh-CcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          123 AFFSLS-HADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       123 a~~l~~-~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      +.+... ...+ +|.+||-+|+|. |...+.+|+..++.+|+++|.+++-++.+++.  ..       .    .++....
T Consensus       153 a~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a~-------~----v~~~~~~  218 (343)
T 2dq4_A          153 AVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--AD-------R----LVNPLEE  218 (343)
T ss_dssp             HHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--CS-------E----EECTTTS
T ss_pred             HHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--HH-------h----ccCcCcc
Confidence            334444 4566 899999999974 88888888887766899999998766655432  10       0    1222111


Q ss_pred             CCCC-----CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          201 DFPY-----IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       201 ~~~~-----~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      +...     ....+|+|+-+-.      ....++...++|+++|  .++.+
T Consensus       219 ~~~~~~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G--~iv~~  261 (343)
T 2dq4_A          219 DLLEVVRRVTGSGVEVLLEFSG------NEAAIHQGLMALIPGG--EARIL  261 (343)
T ss_dssp             CHHHHHHHHHSSCEEEEEECSC------CHHHHHHHHHHEEEEE--EEEEC
T ss_pred             CHHHHHHHhcCCCCCEEEECCC------CHHHHHHHHHHHhcCC--EEEEE
Confidence            1000     0246899986421      1355777888899988  45544

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=87.33  E-value=0.69  Score=41.43  Aligned_cols=48  Identities=10%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             hCcCcCCCCeEEEeCCC--CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          128 SHADMFRSKRVIELGSG--YGLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~G--tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ....+.+|++||=.|+|  .|...+.+|+..|+ +|+++|.+++-++.+++
T Consensus       138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            44567789999999987  47778888887765 99999999887777765

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=87.15  E-value=0.81  Score=37.32  Aligned_cols=97  Identities=16%  Similarity=0.120  Sum_probs=59.4

Q ss_pred             CcCcCCCCeEEEeCC--CCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC---
Q 021691          129 HADMFRSKRVIELGS--GYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP---  203 (309)
Q Consensus       129 ~~~~~~g~~VLELG~--GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~---  203 (309)
                      ...+.+|++||-.|+  |.|.....+++..| .+|+++|.+++.++.+++    .+.     . .+  .+....+..   
T Consensus        33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~----~g~-----~-~~--~d~~~~~~~~~~   99 (198)
T 1pqw_A           33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSR----LGV-----E-YV--GDSRSVDFADEI   99 (198)
T ss_dssp             TSCCCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHT----TCC-----S-EE--EETTCSTHHHHH
T ss_pred             HhCCCCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH----cCC-----C-EE--eeCCcHHHHHHH
Confidence            346678999999995  34666666666555 589999999887766543    222     1 11  232222110   


Q ss_pred             ---CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          204 ---YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       204 ---~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                         .....+|+|+.+-.       ...+....++|+++|  .++.+.
T Consensus       100 ~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G--~~v~~g  137 (198)
T 1pqw_A          100 LELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGG--RFIELG  137 (198)
T ss_dssp             HHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEE--EEEECS
T ss_pred             HHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCC--EEEEEc
Confidence               01236999986421       245677888999998  555544

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=86.98  E-value=0.84  Score=41.25  Aligned_cols=51  Identities=24%  Similarity=0.207  Sum_probs=37.9

Q ss_pred             HHHhhCcCcC-CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691          124 FFSLSHADMF-RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQ  175 (309)
Q Consensus       124 ~~l~~~~~~~-~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~  175 (309)
                      .......... +|.+||=+|+|. |...+.+|+..++ +|+++|.+++-++.++
T Consensus       169 ~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~  221 (357)
T 2cf5_A          169 YSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEAL  221 (357)
T ss_dssp             HHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHH
T ss_pred             HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Confidence            3333334556 899999999874 8888888888765 8999999887665554

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=86.90  E-value=1.1  Score=44.30  Aligned_cols=131  Identities=11%  Similarity=0.073  Sum_probs=72.7

Q ss_pred             CeEEEeCCCCChhhHHHHHhc----------CC--cEEEEEcC---CHHHHHHHHH-----------HHHhccCCCC---
Q 021691          136 KRVIELGSGYGLAGLVIAATT----------EA--LEVVISDG---NPQVVDYIQR-----------NVDANSGAFG---  186 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~----------~~--~~V~~tD~---~~~~l~~~~~-----------n~~~n~~~~~---  186 (309)
                      -+|||+|-|+|+..+...+.+          ..  -+++.++.   +++.+..+-.           -+........   
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            489999999998877765542          11  35899998   6666652211           1111111100   


Q ss_pred             -----CCceEEEEeeCCCCC--CCCC----CCCccEEEEcCCCCC---cc-cHHHHHHHHHHHHhcCCCeEEEEEeecCC
Q 021691          187 -----GTTVKSMTLHWNQDD--FPYI----VDTFDVIVASDCTFF---KE-FHKDLARIIKFLLKKVGPSEALFFSPKRG  251 (309)
Q Consensus       187 -----~~~v~~~~l~w~~~~--~~~~----~~~fDvIi~~d~ly~---~~-~~~~ll~~l~~lLk~~G~~~~ii~~~~r~  251 (309)
                           ..+++. .+.+++..  .+..    ...||.|+. |.+--   ++ --..+++.+.+++++++  .  +++....
T Consensus       148 ~~~~~~~~~~l-~l~~gd~~~~l~~~~~~~~~~~d~~~~-D~f~p~~np~~w~~~~~~~l~~~~~~g~--~--~~t~~~~  221 (676)
T 3ps9_A          148 RLLLDAGRVTL-DLWFGDINELTSQLDDSLNQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPGG--T--LATFTSA  221 (676)
T ss_dssp             EEEEGGGTEEE-EEEESCHHHHGGGBCGGGTTCEEEEEE-CCSCGGGCGGGSCHHHHHHHHHHEEEEE--E--EEESCCC
T ss_pred             EEEecCCcEEE-EEecCCHHHHHHhcccccCCcccEEEE-CCCCCcCChhhhhHHHHHHHHHHhCCCC--E--EEeccCc
Confidence                 011111 12122110  1111    357999988 55321   11 13678899999999988  2  2222111


Q ss_pred             chHHHHHHHHHhCCCeEEEEeccC
Q 021691          252 DSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       252 ~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                         ..+.+.+.++||.+.....+.
T Consensus       222 ---~~vr~~L~~aGf~v~~~~~~g  242 (676)
T 3ps9_A          222 ---GFVRRGLQDAGFTMQKRKGFG  242 (676)
T ss_dssp             ---HHHHHHHHHHTCEEEEEECST
T ss_pred             ---HHHHHHHHhCCeEEEeccccc
Confidence               356778889999998776544

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=86.72  E-value=1.2  Score=39.93  Aligned_cols=104  Identities=15%  Similarity=0.228  Sum_probs=63.5

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCC--CChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSG--YGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~G--tG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      +..........+|++||-.|+|  .|.....+++.. ++ +|+++|.+++-++.+++.    +..    .  +  ++..+
T Consensus       159 a~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~----~--~--~~~~~  225 (347)
T 1jvb_A          159 TYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GAD----Y--V--INASM  225 (347)
T ss_dssp             HHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCS----E--E--EETTT
T ss_pred             HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCC----E--E--ecCCC
Confidence            3333344566789999999998  466666777776 54 899999999888777531    221    1  1  12221


Q ss_pred             CCC-----CCCC-CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          200 DDF-----PYIV-DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       200 ~~~-----~~~~-~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+.     .... +.+|+|+-+--      ....++...++|+++|  .++.+.
T Consensus       226 ~~~~~~~~~~~~~~~~d~vi~~~g------~~~~~~~~~~~l~~~G--~iv~~g  271 (347)
T 1jvb_A          226 QDPLAEIRRITESKGVDAVIDLNN------SEKTLSVYPKALAKQG--KYVMVG  271 (347)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEESCC------CHHHHTTGGGGEEEEE--EEEECC
T ss_pred             ccHHHHHHHHhcCCCceEEEECCC------CHHHHHHHHHHHhcCC--EEEEEC
Confidence            110     0011 47999987422      1345677778889988  555543

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=86.42  E-value=6.2  Score=42.10  Aligned_cols=132  Identities=9%  Similarity=0.011  Sum_probs=73.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE-E----eeCCC---CCCCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM-T----LHWNQ---DDFPY  204 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~-~----l~w~~---~~~~~  204 (309)
                      ...+++||.||.|.+++.+.. .|. .-|.++|+++.+.+..+.|......-  ...+... .    .+...   ...+ 
T Consensus       850 ~~l~viDLFsG~GGlslGfe~-AG~~~vv~avEid~~A~~ty~~N~p~~~~~--~~DI~~l~~~~~~gdi~~~~~~~lp-  925 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQ-AGISETLWAIEMWDPAAQAFRLNNPGTTVF--TEDCNVLLKLVMAGEVTNSLGQRLP-  925 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHH-TTSEEEEEEECCSHHHHHHHHHHCTTSEEE--CSCHHHHHHHHTTTCSBCSSCCBCC-
T ss_pred             CCceEEecccCccHHHHHHHH-CCCCceEEEEECCHHHHHHHHHhCCCCcEe--eccHHHHhHhhhccchhhhhhhhcc-
Confidence            345899999999999988655 343 35889999999999888874211000  0000000 0    00000   0011 


Q ss_pred             CCCCccEEEEcCCCCCcc------------cHHHHHHHHHHHHhcCCCeEEEEEee-c------CCchHHHHHHHHHhCC
Q 021691          205 IVDTFDVIVASDCTFFKE------------FHKDLARIIKFLLKKVGPSEALFFSP-K------RGDSLDKFLEEIEGNH  265 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~------------~~~~ll~~l~~lLk~~G~~~~ii~~~-~------r~~~~~~f~~~~~~~G  265 (309)
                      ..+.+|+|++..+...-+            ....|+..+.++++.-.+ .++++-. .      ....+..+++.+.+.|
T Consensus       926 ~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~rP-k~fv~ENV~glls~~~g~~~~~il~~L~~lG 1004 (1330)
T 3av4_A          926 QKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRP-RFFLLENVRNFVSYRRSMVLKLTLRCLVRMG 1004 (1330)
T ss_dssp             CTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHHCC-SEEEEEEEGGGGTTTTTHHHHHHHHHHHHHT
T ss_pred             ccCccceEEecCCCcccccccccccccccchhhHHHHHHHHHHHHhcC-cEEEEeccHHHhccCccHHHHHHHHHHHhcC
Confidence            124689999977553311            112355555555543322 3444432 2      2345778888899999


Q ss_pred             CeEEE
Q 021691          266 LHFSI  270 (309)
Q Consensus       266 ~~~~~  270 (309)
                      +.+..
T Consensus      1005 Y~v~~ 1009 (1330)
T 3av4_A         1005 YQCTF 1009 (1330)
T ss_dssp             CEEEE
T ss_pred             CeeeE
Confidence            88754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=86.15  E-value=1.4  Score=39.19  Aligned_cols=96  Identities=11%  Similarity=0.033  Sum_probs=61.6

Q ss_pred             cCcCCCCeEEEeC-CC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC----
Q 021691          130 ADMFRSKRVIELG-SG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP----  203 (309)
Q Consensus       130 ~~~~~g~~VLELG-~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~----  203 (309)
                      ..+.+|++||=.| +| .|...+.+|+..++ +|+++|.+++-++.+++    .+..    .    .++....+..    
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~----~----~~~~~~~~~~~~~~  202 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA----LGAW----E----TIDYSHEDVAKRVL  202 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS----E----EEETTTSCHHHHHH
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC----E----EEeCCCccHHHHHH
Confidence            4667899999999 45 58888888887765 99999999988877764    2221    1    1222211100    


Q ss_pred             --CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          204 --YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       204 --~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                        .....+|+|+-+-.  .     ..+....++|+++|  .++.+.
T Consensus       203 ~~~~~~g~Dvvid~~g--~-----~~~~~~~~~l~~~G--~iv~~g  239 (325)
T 3jyn_A          203 ELTDGKKCPVVYDGVG--Q-----DTWLTSLDSVAPRG--LVVSFG  239 (325)
T ss_dssp             HHTTTCCEEEEEESSC--G-----GGHHHHHTTEEEEE--EEEECC
T ss_pred             HHhCCCCceEEEECCC--h-----HHHHHHHHHhcCCC--EEEEEe
Confidence              11246999987422  1     34566778889988  555554

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=85.93  E-value=1.3  Score=39.59  Aligned_cols=106  Identities=13%  Similarity=0.138  Sum_probs=65.0

Q ss_pred             HHHHHHh-hCcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeC
Q 021691          121 VLAFFSL-SHADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHW  197 (309)
Q Consensus       121 ~La~~l~-~~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w  197 (309)
                      ..|.+.. ....+.+|++||-.|+ | .|.....+|+..++ +|+++|.+++-++.+++.   .+..      .  .++.
T Consensus       141 ~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~---~g~~------~--~~d~  208 (345)
T 2j3h_A          141 MTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTK---FGFD------D--AFNY  208 (345)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---SCCS------E--EEET
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCc------e--EEec
Confidence            3444444 3456678999999997 4 58777777887665 899999998877766532   1221      1  1222


Q ss_pred             CCC-CCC-----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          198 NQD-DFP-----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       198 ~~~-~~~-----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+. +..     .....+|+|+.+-.     .  ..+....++|+++|  .++++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~d~vi~~~g-----~--~~~~~~~~~l~~~G--~~v~~G  255 (345)
T 2j3h_A          209 KEESDLTAALKRCFPNGIDIYFENVG-----G--KMLDAVLVNMNMHG--RIAVCG  255 (345)
T ss_dssp             TSCSCSHHHHHHHCTTCEEEEEESSC-----H--HHHHHHHTTEEEEE--EEEECC
T ss_pred             CCHHHHHHHHHHHhCCCCcEEEECCC-----H--HHHHHHHHHHhcCC--EEEEEc
Confidence            211 110     01246999987522     1  36777778889988  555443

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=85.81  E-value=1.8  Score=38.79  Aligned_cols=104  Identities=14%  Similarity=0.191  Sum_probs=64.5

Q ss_pred             ccHHHHHHHHh-hCcCcC------CCCeEEEe-CCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCC
Q 021691          117 PSEDVLAFFSL-SHADMF------RSKRVIEL-GSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGG  187 (309)
Q Consensus       117 ~sa~~La~~l~-~~~~~~------~g~~VLEL-G~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~  187 (309)
                      |.+...|.+.+ ....+.      +|++||=. |+| .|...+.+|+..|+ +|+++|.+++-++.+++    .+..   
T Consensus       126 ~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---  197 (346)
T 3fbg_A          126 PLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK----MGAD---  197 (346)
T ss_dssp             HHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH----HTCS---
T ss_pred             chhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc---
Confidence            44444454444 334444      79999999 566 48888888888766 99999999988877765    2321   


Q ss_pred             CceEEEEeeCCCCC----CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          188 TTVKSMTLHWNQDD----FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       188 ~~v~~~~l~w~~~~----~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                       .  +  ++..++.    .......+|+|+-+-      .-+..+....++|+++|
T Consensus       198 -~--v--i~~~~~~~~~~~~~~~~g~Dvv~d~~------g~~~~~~~~~~~l~~~G  242 (346)
T 3fbg_A          198 -I--V--LNHKESLLNQFKTQGIELVDYVFCTF------NTDMYYDDMIQLVKPRG  242 (346)
T ss_dssp             -E--E--ECTTSCHHHHHHHHTCCCEEEEEESS------CHHHHHHHHHHHEEEEE
T ss_pred             -E--E--EECCccHHHHHHHhCCCCccEEEECC------CchHHHHHHHHHhccCC
Confidence             1  1  1111100    001134699998631      23456678888999998

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=85.72  E-value=1.5  Score=39.02  Aligned_cols=95  Identities=15%  Similarity=0.095  Sum_probs=60.8

Q ss_pred             cCcCCCCeEEEeC-CC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC----
Q 021691          130 ADMFRSKRVIELG-SG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP----  203 (309)
Q Consensus       130 ~~~~~g~~VLELG-~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~----  203 (309)
                      ..+.+|++||=.| +| .|...+.+|+..++ +|+++|.+++-++.+++    .+..    .    .++....+..    
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~----~----~~~~~~~~~~~~~~  210 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE----Y----LINASKEDILRQVL  210 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----E----EEETTTSCHHHHHH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc----E----EEeCCCchHHHHHH
Confidence            3667899999999 44 58888888887765 89999999887776654    2321    1    1222211110    


Q ss_pred             --CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          204 --YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       204 --~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                        .....+|+|+-+-.     .  ..+....++|+++|  .++.+
T Consensus       211 ~~~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G--~iv~~  246 (334)
T 3qwb_A          211 KFTNGKGVDASFDSVG-----K--DTFEISLAALKRKG--VFVSF  246 (334)
T ss_dssp             HHTTTSCEEEEEECCG-----G--GGHHHHHHHEEEEE--EEEEC
T ss_pred             HHhCCCCceEEEECCC-----h--HHHHHHHHHhccCC--EEEEE
Confidence              01246999987422     1  35667778899998  55544

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=85.47  E-value=1.5  Score=39.40  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=63.5

Q ss_pred             HHHHHh-hCcCcCCCCeEEEeC-CC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          122 LAFFSL-SHADMFRSKRVIELG-SG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       122 La~~l~-~~~~~~~g~~VLELG-~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      .+.+.+ ....+.+|++||=.| +| .|...+.+|+..|+ +|+++|.+++-++.+++    .+..    .  +  ++..
T Consensus       154 ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~--~--~~~~  220 (353)
T 4dup_A          154 TVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER----LGAK----R--G--INYR  220 (353)
T ss_dssp             HHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS----E--E--EETT
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC----E--E--EeCC
Confidence            344444 445677899999995 44 58888888887765 89999999988877764    2321    1  1  2222


Q ss_pred             CCCCC-----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          199 QDDFP-----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       199 ~~~~~-----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ..+..     .....+|+|+-+-.  .     ..+....++|+++|  .++.+
T Consensus       221 ~~~~~~~~~~~~~~g~Dvvid~~g--~-----~~~~~~~~~l~~~G--~iv~~  264 (353)
T 4dup_A          221 SEDFAAVIKAETGQGVDIILDMIG--A-----AYFERNIASLAKDG--CLSII  264 (353)
T ss_dssp             TSCHHHHHHHHHSSCEEEEEESCC--G-----GGHHHHHHTEEEEE--EEEEC
T ss_pred             chHHHHHHHHHhCCCceEEEECCC--H-----HHHHHHHHHhccCC--EEEEE
Confidence            11100     00246999987432  1     24566778888988  44443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=85.42  E-value=0.95  Score=39.90  Aligned_cols=63  Identities=11%  Similarity=-0.039  Sum_probs=38.5

Q ss_pred             CCCccEEEEcCCCCCcc--------------------cHHHHHHHHHHHHhcCCCeEEEEEeecC-------C-----ch
Q 021691          206 VDTFDVIVASDCTFFKE--------------------FHKDLARIIKFLLKKVGPSEALFFSPKR-------G-----DS  253 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~--------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r-------~-----~~  253 (309)
                      +++||+|+++.+.+...                    .+..+++.+.++|+++|  .+++.....       .     ..
T Consensus        38 ~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G--~l~i~~~d~~~~~~~~g~~~~~~~  115 (297)
T 2zig_A           38 EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGG--RLVIVVGDVAVARRRFGRHLVFPL  115 (297)
T ss_dssp             TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEE--EEEEEECCEEEECC----EEEECH
T ss_pred             CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCc--EEEEEECCCccccccCCccccccc
Confidence            46899999954443221                    12456778899999999  444433210       0     01


Q ss_pred             HHHHHHHHHhCCCeEEE
Q 021691          254 LDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       254 ~~~f~~~~~~~G~~~~~  270 (309)
                      ...+...+++.||....
T Consensus       116 ~~~l~~~~~~~Gf~~~~  132 (297)
T 2zig_A          116 HADIQVRCRKLGFDNLN  132 (297)
T ss_dssp             HHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHcCCeeec
Confidence            23566778889987643

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=85.37  E-value=0.64  Score=40.94  Aligned_cols=123  Identities=10%  Similarity=0.018  Sum_probs=64.6

Q ss_pred             cCCCCeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          132 MFRSKRVIELGSGY-GLA-GLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ...+++||=+|+|- |.. ...+++ .+..+|+.++.+++-.+.+.+.+......     +.+...+|++  .......+
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~-~G~~~v~i~~R~~~~a~~la~~~~~~~~~-----~~i~~~~~~~--l~~~l~~~  195 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVT-HGVQKLQVADLDTSRAQALADVINNAVGR-----EAVVGVDARG--IEDVIAAA  195 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSSHHHHHHHHHHHHHHHTS-----CCEEEECSTT--HHHHHHHS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHhhcCC-----ceEEEcCHHH--HHHHHhcC
Confidence            45789999999972 222 222333 46668999999988777666655543221     1222233321  11111358


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      |+||.+-++-........+  -..+++++.    ++++.......-.|++.+++.|..+
T Consensus       196 DiVInaTp~Gm~~~~~~pi--~~~~l~~~~----~v~DlvY~P~~T~ll~~A~~~G~~~  248 (283)
T 3jyo_A          196 DGVVNATPMGMPAHPGTAF--DVSCLTKDH----WVGDVVYMPIETELLKAARALGCET  248 (283)
T ss_dssp             SEEEECSSTTSTTSCSCSS--CGGGCCTTC----EEEECCCSSSSCHHHHHHHHHTCCE
T ss_pred             CEEEECCCCCCCCCCCCCC--CHHHhCCCC----EEEEecCCCCCCHHHHHHHHCcCeE
Confidence            9999876543211100001  123455443    3333222112246888899988765

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=84.90  E-value=1.1  Score=40.12  Aligned_cols=125  Identities=12%  Similarity=0.080  Sum_probs=63.1

Q ss_pred             CcCCCCeEEEeCCC-CChh-hHHHHHhcCCcEEEEEcCC---HHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCC
Q 021691          131 DMFRSKRVIELGSG-YGLA-GLVIAATTEALEVVISDGN---PQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPY  204 (309)
Q Consensus       131 ~~~~g~~VLELG~G-tG~~-~l~la~~~~~~~V~~tD~~---~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~  204 (309)
                      ....|++||=+|+| .|.. ...++ ..|+.+|+.++.+   .+-.+.+.+.+....      .+.+...+|.+.. ...
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L~-~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~------~~~~~~~~~~~~~~l~~  222 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQAA-LDGVKEISIFNRKDDFYANAEKTVEKINSKT------DCKAQLFDIEDHEQLRK  222 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHH-HTTCSEEEEEECSSTTHHHHHHHHHHHHHHS------SCEEEEEETTCHHHHHH
T ss_pred             CCccCCEEEEECCChHHHHHHHHHH-HCCCCEEEEEECCCchHHHHHHHHHHhhhhc------CCceEEeccchHHHHHh
Confidence            34678999999997 2222 22233 3466699999998   555554444443321      1223334443211 011


Q ss_pred             CCCCccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          205 IVDTFDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      ....+|+||.+-++-....  ...+.  ....++++.    ++++.......-.|++.+++.|..+
T Consensus       223 ~l~~aDiIINaTp~Gm~~~~~~~p~~--~~~~l~~~~----~V~DlvY~P~~T~ll~~A~~~G~~~  282 (315)
T 3tnl_A          223 EIAESVIFTNATGVGMKPFEGETLLP--SADMLRPEL----IVSDVVYKPTKTRLLEIAEEQGCQT  282 (315)
T ss_dssp             HHHTCSEEEECSSTTSTTSTTCCSCC--CGGGCCTTC----EEEESCCSSSSCHHHHHHHHTTCEE
T ss_pred             hhcCCCEEEECccCCCCCCCCCCCCC--cHHHcCCCC----EEEEeccCCCCCHHHHHHHHCCCeE
Confidence            1136899998665432111  00010  112344443    3333222111246889999999865

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=84.08  E-value=1.6  Score=39.58  Aligned_cols=52  Identities=15%  Similarity=0.157  Sum_probs=38.2

Q ss_pred             HHHHhhCcCcC-CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHH
Q 021691          123 AFFSLSHADMF-RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQ  175 (309)
Q Consensus       123 a~~l~~~~~~~-~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~  175 (309)
                      +.......... +|.+||=+|+|. |...+.+|+..++ +|+++|.+++-++.++
T Consensus       175 a~~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~  228 (366)
T 1yqd_A          175 VYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEAL  228 (366)
T ss_dssp             HHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHH
T ss_pred             HHHHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            33343334555 899999999874 7888888887765 8999999887666554

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=83.91  E-value=0.69  Score=41.77  Aligned_cols=104  Identities=18%  Similarity=0.136  Sum_probs=63.2

Q ss_pred             HHHHhhCcCcCCC------CeEEEeCCCC-Chhh-HHHH-HhcCCcEEEEEcCCHH---HHHHHHHHHHhccCCCCCCce
Q 021691          123 AFFSLSHADMFRS------KRVIELGSGY-GLAG-LVIA-ATTEALEVVISDGNPQ---VVDYIQRNVDANSGAFGGTTV  190 (309)
Q Consensus       123 a~~l~~~~~~~~g------~~VLELG~Gt-G~~~-l~la-~~~~~~~V~~tD~~~~---~l~~~~~n~~~n~~~~~~~~v  190 (309)
                      |.+......+.+|      .+||=+|+|. |... +.+| +..++.+|+++|.+++   -++.+++    .+..      
T Consensus       155 a~~al~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~------  224 (357)
T 2b5w_A          155 TEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDAT------  224 (357)
T ss_dssp             HHHHHHHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTCE------
T ss_pred             HHHHHHhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCCc------
Confidence            3333333345567      9999999974 7777 8888 7777656999999887   6666653    2321      


Q ss_pred             EEEEeeCCCCCCCC---CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          191 KSMTLHWNQDDFPY---IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       191 ~~~~l~w~~~~~~~---~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+   +....+...   ..+.+|+|+-+  .-    .+..+....++|+++|  .++.+.
T Consensus       225 ~v---~~~~~~~~~i~~~~gg~Dvvid~--~g----~~~~~~~~~~~l~~~G--~iv~~g  273 (357)
T 2b5w_A          225 YV---DSRQTPVEDVPDVYEQMDFIYEA--TG----FPKHAIQSVQALAPNG--VGALLG  273 (357)
T ss_dssp             EE---ETTTSCGGGHHHHSCCEEEEEEC--SC----CHHHHHHHHHHEEEEE--EEEECC
T ss_pred             cc---CCCccCHHHHHHhCCCCCEEEEC--CC----ChHHHHHHHHHHhcCC--EEEEEe
Confidence            11   222111100   01268999863  21    1345777888999998  555543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=83.74  E-value=1.1  Score=39.39  Aligned_cols=92  Identities=12%  Similarity=0.133  Sum_probs=57.7

Q ss_pred             cCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC-CCCCCCCCC
Q 021691          132 MFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ-DDFPYIVDT  208 (309)
Q Consensus       132 ~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~-~~~~~~~~~  208 (309)
                      +.+|++||-.|+ | .|...+.+|+..++ +|+++|.+++-++.+++    .+..    .  +  ++..+ .+....-..
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~----~--~--~~~~~~~~~~~~~~~  189 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE----E--A--ATYAEVPERAKAWGG  189 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS----E--E--EEGGGHHHHHHHTTS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC----E--E--EECCcchhHHHHhcC
Confidence            668999999998 4 58888888887765 99999998887776643    2321    1  1  12111 100000046


Q ss_pred             ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      +|+|+- -.  .     ..++...++++++|  .++.+
T Consensus       190 ~d~vid-~g--~-----~~~~~~~~~l~~~G--~~v~~  217 (302)
T 1iz0_A          190 LDLVLE-VR--G-----KEVEESLGLLAHGG--RLVYI  217 (302)
T ss_dssp             EEEEEE-CS--C-----TTHHHHHTTEEEEE--EEEEC
T ss_pred             ceEEEE-CC--H-----HHHHHHHHhhccCC--EEEEE
Confidence            899986 22  1     24566777888888  44443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=83.38  E-value=11  Score=31.39  Aligned_cols=83  Identities=10%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC----
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY----  204 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~----  204 (309)
                      ....|++||=.|++.| +|..+++.+  .+.+|+++|.+++.++.+...+...+.    ..+.+...+.+..+...    
T Consensus        10 ~~l~~k~vlITGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~d~d~~~~~~~~~~   84 (247)
T 3i1j_A           10 ELLKGRVILVTGAARG-IGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQ----PQPLIIALNLENATAQQYREL   84 (247)
T ss_dssp             TTTTTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTS----CCCEEEECCTTTCCHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC----CCceEEEeccccCCHHHHHHH
Confidence            4567899998887644 444444432  256899999999888888777765542    23445555543221110    


Q ss_pred             ------CCCCccEEEEcCCC
Q 021691          205 ------IVDTFDVIVASDCT  218 (309)
Q Consensus       205 ------~~~~fDvIi~~d~l  218 (309)
                            ..+..|+++.+-.+
T Consensus        85 ~~~~~~~~g~id~lv~nAg~  104 (247)
T 3i1j_A           85 AARVEHEFGRLDGLLHNASI  104 (247)
T ss_dssp             HHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHhCCCCCEEEECCcc
Confidence                  01468999986654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=83.36  E-value=2.2  Score=38.20  Aligned_cols=105  Identities=16%  Similarity=0.206  Sum_probs=65.1

Q ss_pred             ccHHHHHHHHh-hCcCcCCCCeEEEeC-CC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          117 PSEDVLAFFSL-SHADMFRSKRVIELG-SG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       117 ~sa~~La~~l~-~~~~~~~g~~VLELG-~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      +.+..-+.+.+ ....+.+|++||=+| +| .|...+.+|+..++ +|+++ .+++-++.+++    .+..       . 
T Consensus       132 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~----lGa~-------~-  197 (343)
T 3gaz_A          132 PLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD----LGAT-------P-  197 (343)
T ss_dssp             HHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH----HTSE-------E-
T ss_pred             hhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH----cCCC-------E-
Confidence            33333444444 455677899999999 45 58888888888765 89999 78877766654    2321       1 


Q ss_pred             EeeCCCCCCC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          194 TLHWNQDDFP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       194 ~l~w~~~~~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                       ++ ...+..      .....+|+|+-+--       ...+....++|+++|  .++.+
T Consensus       198 -i~-~~~~~~~~~~~~~~~~g~D~vid~~g-------~~~~~~~~~~l~~~G--~iv~~  245 (343)
T 3gaz_A          198 -ID-ASREPEDYAAEHTAGQGFDLVYDTLG-------GPVLDASFSAVKRFG--HVVSC  245 (343)
T ss_dssp             -EE-TTSCHHHHHHHHHTTSCEEEEEESSC-------THHHHHHHHHEEEEE--EEEES
T ss_pred             -ec-cCCCHHHHHHHHhcCCCceEEEECCC-------cHHHHHHHHHHhcCC--eEEEE
Confidence             22 111110      01246999986421       145677778899998  45443

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=82.93  E-value=2.5  Score=37.71  Aligned_cols=61  Identities=15%  Similarity=0.210  Sum_probs=40.3

Q ss_pred             CCCccEEEEcCCCCCcc------------cHHHHHHHHHHHHhcCCCeEEEEEeecCC------chHHHHHHHHHhCC-C
Q 021691          206 VDTFDVIVASDCTFFKE------------FHKDLARIIKFLLKKVGPSEALFFSPKRG------DSLDKFLEEIEGNH-L  266 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~------~~~~~f~~~~~~~G-~  266 (309)
                      .++||+|+. |+.|...            .....+..+.++|+++|  .+++....+.      ..+..+...+...| +
T Consensus        56 ~~svDlI~t-DPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G--~i~i~~~~~~~~~~~~~~l~~l~~~i~~~G~~  132 (319)
T 1eg2_A           56 DDSVQLIIC-DPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTG--SIAIFGGLQYQGEAGSGDLISIISHMRQNSKM  132 (319)
T ss_dssp             TTCEEEEEE-CCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEE--EEEEEECSCCCCCTTBCCHHHHHHHHHHHCCC
T ss_pred             cCCcCEEEE-CCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCe--EEEEEcCcccccccccccHHHHHHHHhCcccc
Confidence            458999999 7777644            45667788899999999  5555443331      22345566666666 7


Q ss_pred             eEE
Q 021691          267 HFS  269 (309)
Q Consensus       267 ~~~  269 (309)
                      .+.
T Consensus       133 ~~~  135 (319)
T 1eg2_A          133 LLA  135 (319)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            653

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=82.65  E-value=2.5  Score=36.84  Aligned_cols=114  Identities=17%  Similarity=0.200  Sum_probs=61.0

Q ss_pred             cCCCCeEEEeCCC-CChh-hHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          132 MFRSKRVIELGSG-YGLA-GLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~G-tG~~-~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ...+++||=+|+| .|.. ...+++ .+..+|+.++.+++-.+.+.+.+..       ..+.+  ..|.+..    ...+
T Consensus       117 ~l~~k~~lvlGaGg~~~aia~~L~~-~G~~~v~i~~R~~~~a~~la~~~~~-------~~~~~--~~~~~l~----~~~~  182 (272)
T 3pwz_A          117 PLRNRRVLLLGAGGAVRGALLPFLQ-AGPSELVIANRDMAKALALRNELDH-------SRLRI--SRYEALE----GQSF  182 (272)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHCC-------TTEEE--ECSGGGT----TCCC
T ss_pred             CccCCEEEEECccHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhcc-------CCeeE--eeHHHhc----ccCC
Confidence            4578999999997 2222 222333 4557999999998765555444321       12333  2333211    1579


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee-cCCchHHHHHHHHHhCCCe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP-KRGDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~-~r~~~~~~f~~~~~~~G~~  267 (309)
                      |+||.+-+.-.....+.+ .  ...++++.   + +++. +++. ...|++.+++.|..
T Consensus       183 DivInaTp~gm~~~~~~i-~--~~~l~~~~---~-V~DlvY~P~-~T~ll~~A~~~G~~  233 (272)
T 3pwz_A          183 DIVVNATSASLTADLPPL-P--ADVLGEAA---L-AYELAYGKG-LTPFLRLAREQGQA  233 (272)
T ss_dssp             SEEEECSSGGGGTCCCCC-C--GGGGTTCS---E-EEESSCSCC-SCHHHHHHHHHSCC
T ss_pred             CEEEECCCCCCCCCCCCC-C--HHHhCcCC---E-EEEeecCCC-CCHHHHHHHHCCCC
Confidence            999986543211110000 0  13455554   3 3332 2332 23588899999976

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=82.38  E-value=2.5  Score=38.01  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=63.4

Q ss_pred             HHHHHhh-CcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          122 LAFFSLS-HADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       122 La~~l~~-~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      .|.+.+. ...+.+|++||-.|+ | .|...+.+++..|+ +|+++|.+++-++.+++    .+..      .  .++..
T Consensus       157 ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~------~--~~d~~  223 (351)
T 1yb5_A          157 TAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH------E--VFNHR  223 (351)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS------E--EEETT
T ss_pred             HHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC------E--EEeCC
Confidence            3444443 456678999999997 3 57777777777664 89999999887775543    2221      1  12222


Q ss_pred             CCCCC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          199 QDDFP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       199 ~~~~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +.+..      .....+|+|+.+-.       ...+....++++++|  .++.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G--~iv~~g  269 (351)
T 1yb5_A          224 EVNYIDKIKKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGG--RVIVVG  269 (351)
T ss_dssp             STTHHHHHHHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEE--EEEECC
T ss_pred             CchHHHHHHHHcCCCCcEEEEECCC-------hHHHHHHHHhccCCC--EEEEEe
Confidence            21100      01236999987521       134567778899998  555443

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=82.33  E-value=3.1  Score=36.93  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=63.2

Q ss_pred             HHHHhh-CcCcCCCCeEEEeCC--CCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          123 AFFSLS-HADMFRSKRVIELGS--GYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       123 a~~l~~-~~~~~~g~~VLELG~--GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      +.+.+. ...+.+|++||-.|+  |.|.....+++..++ +|+++|.+++-++.+++    .+..      .  .++...
T Consensus       133 a~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~g~~------~--~~d~~~  199 (333)
T 1wly_A          133 AQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARK----LGCH------H--TINYST  199 (333)
T ss_dssp             HHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS------E--EEETTT
T ss_pred             HHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC------E--EEECCC
Confidence            434443 446678999999995  457777777777664 99999999887777754    1221      1  112221


Q ss_pred             CCCC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          200 DDFP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       200 ~~~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+..      .....+|+|+.+--  .     ..++...++++++|  .++.+.
T Consensus       200 ~~~~~~i~~~~~~~~~d~vi~~~g--~-----~~~~~~~~~l~~~G--~iv~~g  244 (333)
T 1wly_A          200 QDFAEVVREITGGKGVDVVYDSIG--K-----DTLQKSLDCLRPRG--MCAAYG  244 (333)
T ss_dssp             SCHHHHHHHHHTTCCEEEEEECSC--T-----TTHHHHHHTEEEEE--EEEECC
T ss_pred             HHHHHHHHHHhCCCCCeEEEECCc--H-----HHHHHHHHhhccCC--EEEEEe
Confidence            1100      01236999987432  1     34667778889988  555543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=82.15  E-value=2  Score=38.06  Aligned_cols=103  Identities=15%  Similarity=0.163  Sum_probs=63.6

Q ss_pred             HHHHhh-CcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          123 AFFSLS-HADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       123 a~~l~~-~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      +.+... ...+.+|++||-.|+ | .|.....+++..++ +|+++|.+++-++.+++    .+..      .  .++..+
T Consensus       128 a~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~----~g~~------~--~~~~~~  194 (327)
T 1qor_A          128 VYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW------Q--VINYRE  194 (327)
T ss_dssp             HHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS------E--EEETTT
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC------E--EEECCC
Confidence            334443 446678999999994 3 57777777776665 99999999887777764    1221      1  122222


Q ss_pred             CCCC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          200 DDFP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       200 ~~~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+..      .....+|+|+.+-.       ...++...++|+++|  .++.+.
T Consensus       195 ~~~~~~~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G--~iv~~g  239 (327)
T 1qor_A          195 EDLVERLKEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRG--LMVSFG  239 (327)
T ss_dssp             SCHHHHHHHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEE--EEEECC
T ss_pred             ccHHHHHHHHhCCCCceEEEECCc-------hHHHHHHHHHhcCCC--EEEEEe
Confidence            1110      01236999987532       234677778889988  555544

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=81.97  E-value=6.2  Score=34.32  Aligned_cols=108  Identities=16%  Similarity=0.144  Sum_probs=57.3

Q ss_pred             CCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          135 SKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       135 g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      +++|+=||+|- |..........+ .+|+.++.+++-.+.+. .+   +.       .+  ..|.+.     . .+|+||
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~~ka~~la-~~---~~-------~~--~~~~~l-----~-~~DiVI  177 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRSSRGLDFFQ-RL---GC-------DC--FMEPPK-----S-AFDLII  177 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHH-HH---TC-------EE--ESSCCS-----S-CCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HC---CC-------eE--ecHHHh-----c-cCCEEE
Confidence            89999999973 433222223345 89999998875444433 21   11       11  223221     1 689999


Q ss_pred             EcCCCCCcccHHHH-HHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          214 ASDCTFFKEFHKDL-ARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       214 ~~d~ly~~~~~~~l-l~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      .+-+.-.... ..+ ...+...++++.   +++=..+.+.  ..|++.+++.|..+
T Consensus       178 naTp~Gm~~~-~~l~~~~l~~~l~~~~---~v~D~vY~P~--T~ll~~A~~~G~~~  227 (269)
T 3phh_A          178 NATSASLHNE-LPLNKEVLKGYFKEGK---LAYDLAYGFL--TPFLSLAKELKTPF  227 (269)
T ss_dssp             ECCTTCCCCS-CSSCHHHHHHHHHHCS---EEEESCCSSC--CHHHHHHHHTTCCE
T ss_pred             EcccCCCCCC-CCCChHHHHhhCCCCC---EEEEeCCCCc--hHHHHHHHHCcCEE
Confidence            7654332111 001 112333456655   3222222333  35999999999865

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=81.61  E-value=2.5  Score=37.95  Aligned_cols=103  Identities=14%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             HHHHh-hCcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          123 AFFSL-SHADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       123 a~~l~-~~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      |.+.+ ....+.+|++||-.|+ | .|.....+++..++ +|+++|.+++-++.+++.    +..      .  .++...
T Consensus       150 A~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~------~--~~~~~~  216 (354)
T 2j8z_A          150 AFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GAA------A--GFNYKK  216 (354)
T ss_dssp             HHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS------E--EEETTT
T ss_pred             HHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCc------E--EEecCC
Confidence            33343 3456678999999994 3 57777777777654 899999999887777432    221      1  122221


Q ss_pred             CCCC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          200 DDFP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       200 ~~~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+..      .....+|+|+-+-.-       ..+....++|+++|  .++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~d~vi~~~G~-------~~~~~~~~~l~~~G--~iv~~G  261 (354)
T 2j8z_A          217 EDFSEATLKFTKGAGVNLILDCIGG-------SYWEKNVNCLALDG--RWVLYG  261 (354)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEESSCG-------GGHHHHHHHEEEEE--EEEECC
T ss_pred             hHHHHHHHHHhcCCCceEEEECCCc-------hHHHHHHHhccCCC--EEEEEe
Confidence            1100      112469999875321       13566678899998  555554

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=81.05  E-value=5.1  Score=33.93  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=50.6

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--------  202 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--------  202 (309)
                      ..+++||=-|++.| +|..+|+.+  .+.+|+++|.+++.++.+...+...+     .++.+...|..+...        
T Consensus         5 ~~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~   78 (252)
T 3h7a_A            5 PRNATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG-----GRIVARSLDARNEDEVTAFLNAA   78 (252)
T ss_dssp             CCSCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEECcCCCHHHHHHHHHHH
Confidence            46789998888765 344444332  25689999999988888777776543     245666665543321        


Q ss_pred             CCCCCCccEEEEcCCC
Q 021691          203 PYIVDTFDVIVASDCT  218 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~l  218 (309)
                      ... +..|+++.+-.+
T Consensus        79 ~~~-g~id~lv~nAg~   93 (252)
T 3h7a_A           79 DAH-APLEVTIFNVGA   93 (252)
T ss_dssp             HHH-SCEEEEEECCCC
T ss_pred             Hhh-CCceEEEECCCc
Confidence            011 578999886654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=81.05  E-value=7.2  Score=33.51  Aligned_cols=80  Identities=13%  Similarity=0.114  Sum_probs=51.3

Q ss_pred             CCCCeEEEeCCCCCh---hhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-------
Q 021691          133 FRSKRVIELGSGYGL---AGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-------  202 (309)
Q Consensus       133 ~~g~~VLELG~GtG~---~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-------  202 (309)
                      +.||.+|==|++.|+   .+..+++.  +.+|+++|.+++.++.+.+.+...+.     ++.....|..+.+.       
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~l~~~g~-----~~~~~~~Dv~~~~~v~~~~~~   79 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAA--GARVILNDIRATLLAESVDTLTRKGY-----DAHGVAFDVTDELAIEAAFSK   79 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHHHHTTC-----CEEECCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEeeCCCHHHHHHHHHH
Confidence            579999988887763   23333443  67999999999988888777766543     34444454443211       


Q ss_pred             -CCCCCCccEEEEcCCCC
Q 021691          203 -PYIVDTFDVIVASDCTF  219 (309)
Q Consensus       203 -~~~~~~fDvIi~~d~ly  219 (309)
                       ...-++.|+++.+--+.
T Consensus        80 ~~~~~G~iDiLVNNAG~~   97 (255)
T 4g81_D           80 LDAEGIHVDILINNAGIQ   97 (255)
T ss_dssp             HHHTTCCCCEEEECCCCC
T ss_pred             HHHHCCCCcEEEECCCCC
Confidence             01235789999865443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=80.56  E-value=0.57  Score=40.35  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             CCCeEEEeCCCC-Chh-hHHHHHhcCCcEEEEEcCCH
Q 021691          134 RSKRVIELGSGY-GLA-GLVIAATTEALEVVISDGNP  168 (309)
Q Consensus       134 ~g~~VLELG~Gt-G~~-~l~la~~~~~~~V~~tD~~~  168 (309)
                      ++++|+=+|||. |.. ...|++ .|..+++.+|.+.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~-~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLAS-AGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHH-cCCCeEEEEcCCC
Confidence            467999999983 533 333444 4667999999886

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=80.43  E-value=2.2  Score=38.51  Aligned_cols=89  Identities=19%  Similarity=0.176  Sum_probs=55.4

Q ss_pred             CCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCH---HHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC----CC
Q 021691          135 SKRVIELGSGY-GLAGLVIAATTEALEVVISDGNP---QVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY----IV  206 (309)
Q Consensus       135 g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~---~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~----~~  206 (309)
                      |++||=.|+|. |...+.+|+..|+ +|+++|.++   +-++.+++    .+..    .+     + .+ +...    ..
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga~----~v-----~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKTN----YY-----N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTCE----EE-----E-CT-TCSHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCCc----ee-----c-hH-HHHHHHHHhC
Confidence            99999999963 7777777877766 999999987   66666543    2321    11     2 11 1100    01


Q ss_pred             CCccEEEEcCCCCCcccHHHHH-HHHHHHHhcCCCeEEEEEe
Q 021691          207 DTFDVIVASDCTFFKEFHKDLA-RIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll-~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..+|+|+-+-.  .    ...+ +...++|+++|  .++.+.
T Consensus       245 ~~~d~vid~~g--~----~~~~~~~~~~~l~~~G--~iv~~g  278 (366)
T 2cdc_A          245 GKFDVIIDATG--A----DVNILGNVIPLLGRNG--VLGLFG  278 (366)
T ss_dssp             CCEEEEEECCC--C----CTHHHHHHGGGEEEEE--EEEECS
T ss_pred             CCCCEEEECCC--C----hHHHHHHHHHHHhcCC--EEEEEe
Confidence            46999987422  1    1234 67778888888  555443

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=80.14  E-value=2.7  Score=37.67  Aligned_cols=100  Identities=11%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             hCcCcCCC--CeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          128 SHADMFRS--KRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       128 ~~~~~~~g--~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      ....+.+|  ++||=.|+ | .|.....+++..|+.+|+++|.+++-++.+++.   .+..      .  .++..+.+..
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~------~--~~d~~~~~~~  220 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD------A--AINYKKDNVA  220 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS------E--EEETTTSCHH
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc------e--EEecCchHHH
Confidence            33456678  99999998 3 577777777776655999999998776666532   2221      1  1222221110


Q ss_pred             -----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          204 -----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       204 -----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                           ...+.+|+|+-+--       ...+....++|+++|  .++.+.
T Consensus       221 ~~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G--~iv~~G  260 (357)
T 2zb4_A          221 EQLRESCPAGVDVYFDNVG-------GNISDTVISQMNENS--HIILCG  260 (357)
T ss_dssp             HHHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEE--EEEECC
T ss_pred             HHHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCc--EEEEEC
Confidence                 01126899987532       256777788899988  555443

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=80.01  E-value=8.5  Score=33.10  Aligned_cols=82  Identities=12%  Similarity=0.119  Sum_probs=50.5

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC-CCC------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD-DFP------  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~-~~~------  203 (309)
                      ..+++||=-|++.| +|..+|+.+  .+.+|++++.++.-++.+.+.+...+.    .++.+..+|..+. ..-      
T Consensus        10 ~~~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~Dl~~~~~~v~~~~~~   84 (311)
T 3o26_A           10 TKRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH----ENVVFHQLDVTDPIATMSSLADF   84 (311)
T ss_dssp             --CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC----CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----CceEEEEccCCCcHHHHHHHHHH
Confidence            46788998887654 444444432  256999999998877776666654332    3566777766543 110      


Q ss_pred             --CCCCCccEEEEcCCCC
Q 021691          204 --YIVDTFDVIVASDCTF  219 (309)
Q Consensus       204 --~~~~~fDvIi~~d~ly  219 (309)
                        ...+..|++|.+--+.
T Consensus        85 ~~~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           85 IKTHFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHHHSSCCEEEECCCCC
T ss_pred             HHHhCCCCCEEEECCccc
Confidence              0114789999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	7e-05
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.002
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	0.004

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN 181
             +   ++   K V++  S  G+ G+  A  T A EV ++D +    + ++RNV  N
Sbjct: 36  IVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLN 92

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 4/117 (3%)

Query: 127 LSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG 186
           +    M      ++LGSG G   L +AA T        +       Y +           
Sbjct: 144 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMK 203

Query: 187 GTTVKSMTLHWNQDDF---PYIVDTFDV-IVASDCTFFKEFHKDLARIIKFLLKKVG 239
               K       + DF    +     +  ++  +   F        +     +K+ G
Sbjct: 204 WYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGG 260

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 10/155 (6%)

Query: 123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVIS-DGNPQVVDYIQRNVDAN 181
               LS  D+     V+E GSG G   L ++    +   VIS +      D  ++N    
Sbjct: 87  INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW 146

Query: 182 SGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLA---RIIKFLLKKV 238
             ++  + V+    + +        D            F     D+      +      +
Sbjct: 147 RDSWKLSHVEEWPDNVD----FIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHL 202

Query: 239 GPSEAL-FFSPKRGDSLDKFLEEIEGNHLHFSIIE 272
                   +       + + L+ I    L  S  +
Sbjct: 203 KHGGVCAVYVVN-ITQVIELLDGIRTCELALSCEK 236

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.77
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.76
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.75
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.73
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.7
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.65
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.63
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.63
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.63
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.62
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.62
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.61
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.6
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.59
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.59
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.57
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.57
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.55
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.55
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.54
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.54
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.54
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.53
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.52
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.52
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.51
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.5
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.5
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.5
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.49
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.48
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.47
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.47
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.46
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.45
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.43
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.42
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.42
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.41
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.41
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.41
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.41
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.4
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.4
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.39
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.39
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.38
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.38
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.37
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.37
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.36
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.34
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.32
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.3
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.29
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.28
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.26
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.25
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.25
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.25
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.23
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.17
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.16
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.16
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.14
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.13
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.96
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.95
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.9
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.86
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.83
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.77
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.73
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.71
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.63
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.62
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.46
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.42
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.42
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.41
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.39
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.36
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.34
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.33
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.27
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.25
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.22
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.21
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.17
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.96
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.93
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.89
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.88
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.74
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.66
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.64
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.6
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.2
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.07
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.05
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.75
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.58
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.53
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.49
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.25
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.2
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.02
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.01
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.87
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.8
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.49
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.43
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.37
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.33
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.3
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.72
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.54
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.5
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.22
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.99
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.91
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	93.86
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.82
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.45
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.88
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.68
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.36
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.24
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.12
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.03
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.85
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.74
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.45
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.78
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.25
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.88
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	89.67
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	89.46
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.45
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	89.08
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	88.89
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.73
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	88.6
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	88.51
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	87.93
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	87.92
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	87.1
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	86.81
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	86.64
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	85.31
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	84.95
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	84.17
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	84.01
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	83.82
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	83.66
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.16
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	82.74
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	82.62
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	82.48
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	82.34
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	82.13
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	81.07
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	80.96
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	80.95
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	80.76
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	80.65

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=2.2e-18  Score=148.62  Aligned_cols=143  Identities=18%  Similarity=0.243  Sum_probs=113.7

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      +...++.+..++.+|.+|||||||+|..+..+++.  +.+|+++|+|+.|++.+++++..++.    .++.+...+..+ 
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~----~~~~~~~~d~~~-   75 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGV----ENVRFQQGTAES-   75 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTC----CSEEEEECBTTB-
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhccccc----cccccccccccc-
Confidence            34556667778889999999999999999999886  46999999999999999999998877    356776666543 


Q ss_pred             CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----------------------CchHHHH
Q 021691          201 DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----------------------GDSLDKF  257 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------~~~~~~f  257 (309)
                       .+..+++||+|++..++++..++..+++.+.++|+|||  .+++.....                       ..+...+
T Consensus        76 -~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (234)
T d1xxla_          76 -LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDG--RFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEW  152 (234)
T ss_dssp             -CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred             -ccccccccceeeeeceeecccCHHHHHHHHHHeeCCCc--EEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHH
Confidence             34556899999999999999999999999999999999  555543221                       1233446


Q ss_pred             HHHHHhCCCeEEEEec
Q 021691          258 LEEIEGNHLHFSIIEN  273 (309)
Q Consensus       258 ~~~~~~~G~~~~~~~~  273 (309)
                      ...+++.||.+..+..
T Consensus       153 ~~~~~~~gf~~~~~~~  168 (234)
T d1xxla_         153 QAMFSANQLAYQDIQK  168 (234)
T ss_dssp             HHHHHHTTEEEEEEEE
T ss_pred             HHHHHHCCCceeEEEE
Confidence            6678899998776554

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.76  E-value=3.1e-18  Score=146.81  Aligned_cols=134  Identities=15%  Similarity=0.179  Sum_probs=107.8

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ..+.++++|||||||+|..+..+++.  +.+|+++|+|+.|++.+++++..++.    .++.+...++.+.  +...++|
T Consensus        11 ~~l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~----~~i~~~~~d~~~l--~~~~~~f   82 (231)
T d1vl5a_          11 AALKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGH----QQVEYVQGDAEQM--PFTDERF   82 (231)
T ss_dssp             HTCCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC----CSEEEEECCC-CC--CSCTTCE
T ss_pred             cCCCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhccccccc----ccccccccccccc--ccccccc
Confidence            46678899999999999999998876  46999999999999999999988876    4677777776543  4456899


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-----------------------CchHHHHHHHHHhCCC
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-----------------------GDSLDKFLEEIEGNHL  266 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----------------------~~~~~~f~~~~~~~G~  266 (309)
                      |+|++..++++..+...+++.+.++|+|||  .+++.....                       ..+..++.+.++++||
T Consensus        83 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  160 (231)
T d1vl5a_          83 HIVTCRIAAHHFPNPASFVSEAYRVLKKGG--QLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGF  160 (231)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTC
T ss_pred             ccccccccccccCCHHHHHHHHHHhcCCCc--EEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCC
Confidence            999999999999999999999999999999  565544221                       1233456678888999


Q ss_pred             eEEEEec
Q 021691          267 HFSIIEN  273 (309)
Q Consensus       267 ~~~~~~~  273 (309)
                      .++.+..
T Consensus       161 ~~~~~~~  167 (231)
T d1vl5a_         161 ELEELHC  167 (231)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8766544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.6e-18  Score=147.07  Aligned_cols=157  Identities=15%  Similarity=0.060  Sum_probs=126.2

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .+|...-....+.....+.+|++|||||||+|..+..+++..+ .+|+++|.|+.|++.+++++..+++.   .++++..
T Consensus        14 ~~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~---~~v~~~~   89 (245)
T d1nkva_          14 HNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVS---ERVHFIH   89 (245)
T ss_dssp             SSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEE
T ss_pred             cCCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhcc---ccchhhh
Confidence            3666666666777777888999999999999999999888765 59999999999999999999999873   4688887


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec--------------------CCchH
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK--------------------RGDSL  254 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~--------------------r~~~~  254 (309)
                      .++...   ..+++||+|++..++++..++..+++.++++|||||  .+++..+.                    ...+.
T Consensus        90 ~d~~~~---~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (245)
T d1nkva_          90 NDAAGY---VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGG--IMLIGEPYWRQLPATEEIAQACGVSSTSDFLTL  164 (245)
T ss_dssp             SCCTTC---CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEE--EEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCH
T ss_pred             hHHhhc---cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCc--EEEEEeccccCCCChHHHHHHhccCCCcccCCH
Confidence            776543   245789999999999999999999999999999999  56655431                    12355


Q ss_pred             HHHHHHHHhCCCeEEEEeccCchhhh
Q 021691          255 DKFLEEIEGNHLHFSIIENYNAEIWK  280 (309)
Q Consensus       255 ~~f~~~~~~~G~~~~~~~~~~~~~~~  280 (309)
                      ..+...+.++||.+......+...|.
T Consensus       165 ~~~~~~~~~aG~~~v~~~~~~~~~~~  190 (245)
T d1nkva_         165 PGLVGAFDDLGYDVVEMVLADQEGWD  190 (245)
T ss_dssp             HHHHHHHHTTTBCCCEEEECCHHHHH
T ss_pred             HHHHHHHHHcCCEEEEEEeCCHHHHH
Confidence            67888999999987665555555553

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.73  E-value=5.8e-17  Score=143.48  Aligned_cols=146  Identities=15%  Similarity=0.083  Sum_probs=116.9

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      ..+++.+.....+.+|.+|||||||+|..+..+|+.. +.+|+++|+++.+++.++++....++.   .++.+...++.+
T Consensus        53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~---~~v~~~~~d~~~  128 (282)
T d2o57a1          53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLA---DNITVKYGSFLE  128 (282)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCT---TTEEEEECCTTS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccc---cccccccccccc
Confidence            3455556666677889999999999999999998875 458999999999999999999988873   568888877754


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------------------CchHHHHHH
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------------------GDSLDKFLE  259 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------------~~~~~~f~~  259 (309)
                      .  +..+++||+|++..++++..+...+++.+.++|+|||  .+++..+..                    -.+...+.+
T Consensus       129 l--~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  204 (282)
T d2o57a1         129 I--PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRG--VMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRS  204 (282)
T ss_dssp             C--SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE--EEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHH
T ss_pred             c--cccccccchhhccchhhhccCHHHHHHHHHHhcCCCc--EEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHH
Confidence            3  4456899999999999999999999999999999999  555544211                    113456778


Q ss_pred             HHHhCCCeEEEEec
Q 021691          260 EIEGNHLHFSIIEN  273 (309)
Q Consensus       260 ~~~~~G~~~~~~~~  273 (309)
                      .++++||....+..
T Consensus       205 ~l~~~Gf~~i~~~d  218 (282)
T d2o57a1         205 LAKECGLVTLRTFS  218 (282)
T ss_dssp             HHHHTTEEEEEEEE
T ss_pred             HHHHcCCceEEEEE
Confidence            89999998766554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=3.2e-17  Score=143.02  Aligned_cols=141  Identities=20%  Similarity=0.209  Sum_probs=105.9

Q ss_pred             CCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCc
Q 021691          110 TGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTT  189 (309)
Q Consensus       110 tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~  189 (309)
                      ||..   |.+..+.+++...  ..+|++|||+|||+|.+++.+++.  +.+|+++|+++.|++.+++|++.|++.     
T Consensus       101 TG~H---~TT~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~-----  168 (254)
T d2nxca1         101 TGHH---ETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVR-----  168 (254)
T ss_dssp             -CCS---HHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCC-----
T ss_pred             cccc---chhhHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCc-----
Confidence            5655   6677777777654  357999999999999999987764  468999999999999999999999873     


Q ss_pred             eEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691          190 VKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       190 v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~  269 (309)
                      +.+...++..   ....++||+|+++-   ....+..+++.+.++|||||  .+++..... ...+.+.+.++++||.+.
T Consensus       169 ~~~~~~d~~~---~~~~~~fD~V~ani---~~~~l~~l~~~~~~~LkpGG--~lilSgil~-~~~~~v~~~~~~~Gf~~~  239 (254)
T d2nxca1         169 PRFLEGSLEA---ALPFGPFDLLVANL---YAELHAALAPRYREALVPGG--RALLTGILK-DRAPLVREAMAGAGFRPL  239 (254)
T ss_dssp             CEEEESCHHH---HGGGCCEEEEEEEC---CHHHHHHHHHHHHHHEEEEE--EEEEEEEEG-GGHHHHHHHHHHTTCEEE
T ss_pred             eeEEeccccc---cccccccchhhhcc---ccccHHHHHHHHHHhcCCCc--EEEEEecch-hhHHHHHHHHHHCCCEEE
Confidence            3344443321   12346899999962   34557889999999999999  566544433 345778889999999875


Q ss_pred             EE
Q 021691          270 II  271 (309)
Q Consensus       270 ~~  271 (309)
                      ..
T Consensus       240 ~~  241 (254)
T d2nxca1         240 EE  241 (254)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.65  E-value=6.9e-16  Score=129.20  Aligned_cols=120  Identities=16%  Similarity=0.181  Sum_probs=93.0

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      +.+++..|.+.+    ...++++|||+|||+|.+++.+|+.  +.+|+++|+|+.+++.+++|+..|++..  .++.+..
T Consensus        37 ~d~~t~lLi~~l----~~~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~--~~i~~~~  108 (194)
T d1dusa_          37 VDKGTKILVENV----VVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDN--YDIRVVH  108 (194)
T ss_dssp             CCHHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTT--SCEEEEE
T ss_pred             cCHHHHHHHHhC----CcCCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCcc--ceEEEEE
Confidence            455666666554    4557899999999999999998875  5699999999999999999999998742  3466665


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCccc-HHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEF-HKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~-~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .|+.+   ...+++||+|+++.++|.... ...+++.+.++|+|+|  .+++..
T Consensus       109 ~d~~~---~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~  157 (194)
T d1dusa_         109 SDLYE---NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNG--EIWVVI  157 (194)
T ss_dssp             CSTTT---TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEE--EEEEEE
T ss_pred             cchhh---hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCc--EEEEEE
Confidence            55543   223578999999888777554 5789999999999999  444433

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.8e-16  Score=131.03  Aligned_cols=134  Identities=15%  Similarity=0.046  Sum_probs=101.4

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ....++.+|||||||+|..+..+++.. +.+|+++|+++.|++.+++++...+.    .++++...+..+  .+...++|
T Consensus        56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~----~~~~f~~~d~~~--~~~~~~~f  128 (222)
T d2ex4a1          56 PNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGK----RVRNYFCCGLQD--FTPEPDSY  128 (222)
T ss_dssp             --CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGG----GEEEEEECCGGG--CCCCSSCE
T ss_pred             cCCCCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhccccccccccc----cccccccccccc--cccccccc
Confidence            345567899999999999988766543 56899999999999999999877665    245565555443  23446799


Q ss_pred             cEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecC-------------CchHHHHHHHHHhCCCeEEEEe
Q 021691          210 DVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKR-------------GDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       210 DvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r-------------~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      |+|++..++++..+  ...+++.++++|+|+|  .+++.....             ..+.+.+.+.++++||.+...+
T Consensus       129 D~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~  204 (222)
T d2ex4a1         129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNG--IIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  204 (222)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             cccccccccccchhhhhhhHHHHHHHhcCCcc--eEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence            99999999998654  4579999999999999  565554221             1257889999999999875544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=2.5e-15  Score=132.82  Aligned_cols=148  Identities=11%  Similarity=0.080  Sum_probs=114.1

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      .|.....+.+.....+.+|.+|||||||+|.++..+++..+ .+|+++|+|++.++.++++++..++.   ..+.+...+
T Consensus        35 ~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~---~~~~~~~~d  110 (280)
T d2fk8a1          35 EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTN---RSRQVLLQG  110 (280)
T ss_dssp             HHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCS---SCEEEEESC
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccc---cchhhhhhh
Confidence            44455677788888889999999999999999999888765 59999999999999999999988873   345444433


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeecC------------------------
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSPKR------------------------  250 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~~r------------------------  250 (309)
                      ..     ...++||.|++..++.+.  ...+.+++.+.++|||||  .+++.+...                        
T Consensus       111 ~~-----~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG--~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI  183 (280)
T d2fk8a1         111 WE-----DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADG--RMTVQSSVSYHPYEMAARGKKLSFETARFIKFI  183 (280)
T ss_dssp             GG-----GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTC--EEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hh-----hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCc--eEEEEEeeccCcchhhhcccccccccccccchh
Confidence            32     235789999999999886  456899999999999999  555433110                        


Q ss_pred             ---------CchHHHHHHHHHhCCCeEEEEeccC
Q 021691          251 ---------GDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       251 ---------~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                               -.+...+.+.++++||.+..++.+.
T Consensus       184 ~kyifPgg~lPS~~~l~~~~e~aGf~v~~~~~~~  217 (280)
T d2fk8a1         184 VTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLR  217 (280)
T ss_dssp             HHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred             hhhccCCCcccchHhhhhhHHhhccccceeeecc
Confidence                     1234567778889999988777644

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=6e-15  Score=130.93  Aligned_cols=149  Identities=11%  Similarity=0.048  Sum_probs=116.9

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      +|.....+.+.....+.+|.+|||||||.|.+++.+|+..| .+|+++++|++.++.+++.+...++.   ..+.+...+
T Consensus        44 ~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~---~~v~~~~~d  119 (291)
T d1kpia_          44 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSP---RRKEVRIQG  119 (291)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCS---SCEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccc---hhhhhhhhc
Confidence            45566788888888999999999999999999999888776 49999999999999999999988874   456555554


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCcc---------cHHHHHHHHHHHHhcCCCeEEEEEeec------------------
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFKE---------FHKDLARIIKFLLKKVGPSEALFFSPK------------------  249 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~~---------~~~~ll~~l~~lLk~~G~~~~ii~~~~------------------  249 (309)
                      +.     ..+++||.|++..++.|..         .++.+++.+.++|+|||  .+++.+..                  
T Consensus       120 ~~-----~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG--~~~l~~i~~~~~~~~~~~~~~~p~~~  192 (291)
T d1kpia_         120 WE-----EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDG--RMLLHTITIPDKEEAQELGLTSPMSL  192 (291)
T ss_dssp             GG-----GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTC--EEEEEEEECCCHHHHHHHTCCCCHHH
T ss_pred             cc-----ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCC--ceEEEEEeccCcchhhhccCCCchhh
Confidence            32     3457899999999987754         47899999999999999  45443211                  


Q ss_pred             ---------------CCchHHHHHHHHHhCCCeEEEEeccCc
Q 021691          250 ---------------RGDSLDKFLEEIEGNHLHFSIIENYNA  276 (309)
Q Consensus       250 ---------------r~~~~~~f~~~~~~~G~~~~~~~~~~~  276 (309)
                                     .-.+...+...+++.||.++..++...
T Consensus       193 ~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~~~  234 (291)
T d1kpia_         193 LRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGA  234 (291)
T ss_dssp             HHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred             cccchHHHHHhcCCCCCCCHHHHHhhhcccccccceeeeccc
Confidence                           012445667788899999988877543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=8.5e-15  Score=129.58  Aligned_cols=148  Identities=14%  Similarity=0.152  Sum_probs=119.1

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      +|...+.+++.....+.+|.+|||||||.|.+++.+|+..| .+|+++++|++.++.+++++...++.   .++++...|
T Consensus        45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~---~~v~~~~~d  120 (285)
T d1kpga_          45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENL---RSKRVLLAG  120 (285)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCC---SCEEEEESC
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhh---hhhHHHHhh
Confidence            56666888999988999999999999999999999898876 59999999999999999999888773   577777776


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEee--cC----------------------
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSP--KR----------------------  250 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~--~r----------------------  250 (309)
                      +..     .+++||.|++..++.+.  .....+++.+.++|+|||  .+++.+.  .+                      
T Consensus       121 ~~~-----~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG--~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi  193 (285)
T d1kpga_         121 WEQ-----FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADG--VMLLHTITGLHPKEIHERGLPMSFTFARFLKFI  193 (285)
T ss_dssp             GGG-----CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTC--EEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHH
T ss_pred             hhc-----ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCC--cEEEEEEeccCchhhccccCCcchhhhchhhHH
Confidence            643     24689999999988886  456899999999999999  4443221  10                      


Q ss_pred             ---------CchHHHHHHHHHhCCCeEEEEeccC
Q 021691          251 ---------GDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       251 ---------~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                               -.+...+.+.++++||.++.+++..
T Consensus       194 ~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         194 VTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             HHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             HHHhccCCCCCChhhHHHHHHHhchhhcccccch
Confidence                     1245567778999999998887754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=2.7e-15  Score=127.29  Aligned_cols=113  Identities=17%  Similarity=0.240  Sum_probs=86.8

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +..++...  +.++.+|||||||+|..+..+|+.  +.+|+|+|+|++|++.+++++...+.     .+.....+..  .
T Consensus        27 ~~~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~-----~~~~~~~d~~--~   95 (226)
T d1ve3a1          27 LEPLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRES-----NVEFIVGDAR--K   95 (226)
T ss_dssp             HHHHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEECCTT--S
T ss_pred             HHHHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccc-----cccccccccc--c
Confidence            44455443  236679999999999999999886  56999999999999999998877654     2344344333  3


Q ss_pred             CCCCCCCccEEEEcCCCCCcc--cHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          202 FPYIVDTFDVIVASDCTFFKE--FHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+...++||+|++.+++++..  +...+++.+.++|+|||  .+++..
T Consensus        96 l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG--~lii~~  141 (226)
T d1ve3a1          96 LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG--KFIMYF  141 (226)
T ss_dssp             CCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEE--EEEEEE
T ss_pred             ccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCc--EEEEEE
Confidence            445568999999999998854  67789999999999999  555443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.61  E-value=5.6e-15  Score=126.15  Aligned_cols=107  Identities=15%  Similarity=0.116  Sum_probs=84.1

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      .++.+|||||||+|..+..+++..  ++.+|+|+|.|+.|++.+++++...+..   ..+.....+.    .+.....+|
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~---~~~~~~~~d~----~~~~~~~~d  110 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE---IPVEILCNDI----RHVEIKNAS  110 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS---SCEEEECSCT----TTCCCCSEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc---chhhhccchh----hccccccce
Confidence            467899999999999999988864  5679999999999999999998876652   3344333221    223346799


Q ss_pred             EEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          211 VIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       211 vIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      +|+++.++++.  ++...+++.+++.|+|||  .+++...
T Consensus       111 ~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG--~li~~~~  148 (225)
T d1im8a_         111 MVILNFTLQFLPPEDRIALLTKIYEGLNPNG--VLVLSEK  148 (225)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHHEEEEE--EEEEEEE
T ss_pred             eeEEeeeccccChhhHHHHHHHHHHhCCCCc--eeecccc
Confidence            99999988775  578899999999999999  6666654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.60  E-value=2e-15  Score=125.50  Aligned_cols=131  Identities=19%  Similarity=0.176  Sum_probs=99.8

Q ss_pred             CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCC
Q 021691          129 HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       129 ~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~  208 (309)
                      ...+.+|.+|||+|||+|..++.+|+.  +.+|+++|.++++++.+++|++.+++.   .++++...+..+.  ......
T Consensus        28 ~l~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~---~~v~~~~gda~~~--~~~~~~  100 (186)
T d1l3ia_          28 LAEPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLG---DNVTLMEGDAPEA--LCKIPD  100 (186)
T ss_dssp             HHCCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCC---TTEEEEESCHHHH--HTTSCC
T ss_pred             hcCCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCC---cceEEEECchhhc--ccccCC
Confidence            346678999999999999999998775  569999999999999999999999983   4677766543322  223468


Q ss_pred             ccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      ||+|++.....   ....+++.+.++|+|+|  .+++.. ...+....+.+.+++.|+.++.++
T Consensus       101 ~D~v~~~~~~~---~~~~~~~~~~~~LkpgG--~lvi~~-~~~e~~~~~~~~l~~~~~~~~~~~  158 (186)
T d1l3ia_         101 IDIAVVGGSGG---ELQEILRIIKDKLKPGG--RIIVTA-ILLETKFEAMECLRDLGFDVNITE  158 (186)
T ss_dssp             EEEEEESCCTT---CHHHHHHHHHHTEEEEE--EEEEEE-CBHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cCEEEEeCccc---cchHHHHHHHHHhCcCC--EEEEEe-eccccHHHHHHHHHHcCCCeEEEE
Confidence            99999976654   35778999999999999  444433 333455667788888888655443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.59  E-value=2.4e-15  Score=128.56  Aligned_cols=128  Identities=15%  Similarity=0.184  Sum_probs=99.0

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...++++|||||||+|..+..+++.  +.+|+++|.++++++.++++..        .++.+...++...   ..+++||
T Consensus        17 ~~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~~---~~~~~fD   83 (225)
T d2p7ia1          17 PFFRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDA---QLPRRYD   83 (225)
T ss_dssp             GGCCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGC---CCSSCEE
T ss_pred             hhCCCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc--------ccccccccccccc---ccccccc
Confidence            3457889999999999999988775  4689999999999999987632        1345555444332   2357899


Q ss_pred             EEEEcCCCCCcccHHHHHHHHH-HHHhcCCCeEEEEEeec-------------------------------CCchHHHHH
Q 021691          211 VIVASDCTFFKEFHKDLARIIK-FLLKKVGPSEALFFSPK-------------------------------RGDSLDKFL  258 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~-~lLk~~G~~~~ii~~~~-------------------------------r~~~~~~f~  258 (309)
                      +|++.++++|..+...++..+. ++|+|||  .+++..+.                               +..+.+.+.
T Consensus        84 ~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG--~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~  161 (225)
T d2p7ia1          84 NIVLTHVLEHIDDPVALLKRINDDWLAEGG--RLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE  161 (225)
T ss_dssp             EEEEESCGGGCSSHHHHHHHHHHTTEEEEE--EEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHH
T ss_pred             cccccceeEecCCHHHHHHHHHHHhcCCCc--eEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHH
Confidence            9999999999999999999997 7999999  56655431                               123467788


Q ss_pred             HHHHhCCCeEEEEec
Q 021691          259 EEIEGNHLHFSIIEN  273 (309)
Q Consensus       259 ~~~~~~G~~~~~~~~  273 (309)
                      +.+.++||++...+.
T Consensus       162 ~~l~~~Gf~i~~~~~  176 (225)
T d2p7ia1         162 RDASRAGLQVTYRSG  176 (225)
T ss_dssp             HHHHHTTCEEEEEEE
T ss_pred             HHHHHCCCEEEEEEE
Confidence            999999999876553

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.59  E-value=9.4e-15  Score=125.43  Aligned_cols=155  Identities=15%  Similarity=0.112  Sum_probs=111.7

Q ss_pred             CCCCceeecccHH-HHHHHHhhC---cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691          108 DNTGLVCHWPSED-VLAFFSLSH---ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG  183 (309)
Q Consensus       108 ~~tG~~~~W~sa~-~La~~l~~~---~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~  183 (309)
                      +...++ .|+.-. .||.-+...   ..+.+|.+|||||||+|..+..+|...+...|+|+|.++.|++.++.++..+. 
T Consensus        45 ~~~e~r-~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~-  122 (230)
T d1g8sa_          45 GDEEYR-IWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE-  122 (230)
T ss_dssp             TTEEEE-ECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT-
T ss_pred             CCceee-eECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc-
Confidence            444677 898755 566666543   34678999999999999999999998778899999999999999988765443 


Q ss_pred             CCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC--------CchHH
Q 021691          184 AFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR--------GDSLD  255 (309)
Q Consensus       184 ~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------~~~~~  255 (309)
                           ++.....+...... .....+|++++...+++..+...++..++++|||||  .+++....+        ...++
T Consensus       123 -----ni~~i~~d~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG--~~~i~~k~~~~d~~~~~~~~~~  194 (230)
T d1g8sa_         123 -----NIIPILGDANKPQE-YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGG--YGMIAIKARSIDVTKDPKEIFK  194 (230)
T ss_dssp             -----TEEEEECCTTCGGG-GTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEE--EEEEEEEGGGTCSSSCHHHHHH
T ss_pred             -----ccceEEEeeccCcc-cccccceeEEeeccccchHHHHHHHHHHHHhcccCc--eEEEEeeccccCCCCCHHHHHH
Confidence                 34444444433222 234567777666677788889999999999999999  555543222        12345


Q ss_pred             HHHHHHHhCCCeEEEEe
Q 021691          256 KFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       256 ~f~~~~~~~G~~~~~~~  272 (309)
                      +..+.++++||.+....
T Consensus       195 e~~~~L~~aGF~ive~i  211 (230)
T d1g8sa_         195 EQKEILEAGGFKIVDEV  211 (230)
T ss_dssp             HHHHHHHHHTEEEEEEE
T ss_pred             HHHHHHHHcCCEEEEEe
Confidence            56678889999875443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-15  Score=130.82  Aligned_cols=140  Identities=14%  Similarity=0.157  Sum_probs=100.6

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCC----------------------
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGT----------------------  188 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~----------------------  188 (309)
                      ...+|++|||||||+|..++.+++. ++.+|+++|+++.|++.+++++..+...+...                      
T Consensus        48 ~~~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  126 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence            3457889999999999988876654 45689999999999999999988765432110                      


Q ss_pred             ---ceE-EEEe--eCCCCCCCCCCCCccEEEEcCCCCCc----ccHHHHHHHHHHHHhcCCCeEEEEEeecC--------
Q 021691          189 ---TVK-SMTL--HWNQDDFPYIVDTFDVIVASDCTFFK----EFHKDLARIIKFLLKKVGPSEALFFSPKR--------  250 (309)
Q Consensus       189 ---~v~-~~~l--~w~~~~~~~~~~~fDvIi~~d~ly~~----~~~~~ll~~l~~lLk~~G~~~~ii~~~~r--------  250 (309)
                         .+. ....  .......+...++||+|++..++++.    +++..+++.+.++|||||  .+++.....        
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG--~li~~~~~~~~~~~~~~  204 (257)
T d2a14a1         127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGG--HLVTTVTLRLPSYMVGK  204 (257)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEE--EEEEEEESSCCEEEETT
T ss_pred             HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCc--EEEEEEecccccceecc
Confidence               011 1111  11111223446789999999998775    467789999999999999  566655322        


Q ss_pred             ------CchHHHHHHHHHhCCCeEEEEec
Q 021691          251 ------GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       251 ------~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                            ..+.+.+.++++++||.+..++.
T Consensus       205 ~~~~~~~~~~~~~~~~l~~aGf~v~~~~~  233 (257)
T d2a14a1         205 REFSCVALEKGEVEQAVLDAGFDIEQLLH  233 (257)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccccccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                  23678899999999999877653

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.57  E-value=2.4e-14  Score=124.48  Aligned_cols=133  Identities=14%  Similarity=0.089  Sum_probs=104.4

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...+.++|||||||+|..++.+++.++..+++++|. +++++.+++++...++.   .++++...|.-+.    ...+||
T Consensus        77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~---~rv~~~~~D~~~~----~~~~~D  148 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS---DRVDVVEGDFFEP----LPRKAD  148 (253)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT---TTEEEEECCTTSC----CSSCEE
T ss_pred             CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc---cchhhccccchhh----cccchh
Confidence            344568999999999999999999999899999997 78999999999988773   5677777665321    235799


Q ss_pred             EEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeec------------------------CCchHHHHHHHHHhC
Q 021691          211 VIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPK------------------------RGDSLDKFLEEIEGN  264 (309)
Q Consensus       211 vIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~------------------------r~~~~~~f~~~~~~~  264 (309)
                      +|+++.++|+..+  ...+++.+++.|+|||  .+++....                        +..+.++|.+.++++
T Consensus       149 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG--~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~A  226 (253)
T d1tw3a2         149 AIILSFVLLNWPDHDAVRILTRCAEALEPGG--RILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASA  226 (253)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEE--EEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred             heeeccccccCCchhhHHHHHHHHHhcCCCc--EEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHC
Confidence            9999999988644  4578999999999999  66665421                        112567788899999


Q ss_pred             CCeEEEEec
Q 021691          265 HLHFSIIEN  273 (309)
Q Consensus       265 G~~~~~~~~  273 (309)
                      ||++..+..
T Consensus       227 Gf~~~~v~~  235 (253)
T d1tw3a2         227 GLVVEEVRQ  235 (253)
T ss_dssp             TEEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999876654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.55  E-value=1.8e-14  Score=127.33  Aligned_cols=116  Identities=14%  Similarity=0.219  Sum_probs=92.7

Q ss_pred             HHHHhhC-cCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          123 AFFSLSH-ADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       123 a~~l~~~-~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+|+... ..+.++.+|||+|||+|..+..+++..+ +.+|+++|.++.+++.+++++...+.     ++.+...|....
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-----~~~f~~~d~~~~   89 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-----DSEFLEGDATEI   89 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-----EEEEEESCTTTC
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-----cccccccccccc
Confidence            3455443 3456788999999999999999988766 46899999999999999999887664     456655554432


Q ss_pred             CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          201 DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                        + ..++||+|++..++++..+...+++.+.++|||||  .+++..+
T Consensus        90 --~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG--~lii~~~  132 (281)
T d2gh1a1          90 --E-LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGG--KIICFEP  132 (281)
T ss_dssp             --C-CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEE--EEEEEEC
T ss_pred             --c-ccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCc--EEEEEEC
Confidence              2 24579999999999999999999999999999999  6666553

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.55  E-value=1.9e-14  Score=120.36  Aligned_cols=105  Identities=21%  Similarity=0.278  Sum_probs=84.6

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..++.+|||||||+|..++.++++  +.+|+++|+++.|++.+++++...++.    .+.+...|.....   .+++||+
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~~~~~d~~~~~---~~~~fD~   98 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLD----NLQTDLVDLNTLT---FDGEYDF   98 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCT----TEEEEECCTTTCC---CCCCEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhcccc----chhhhheeccccc---ccccccE
Confidence            345569999999999999999886  569999999999999999999887763    4666655544332   3578999


Q ss_pred             EEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          212 IVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       212 Ii~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      |++..++++.  .....+++.+.++|+|+|  .+++..
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG--~~~~~~  134 (198)
T d2i6ga1          99 ILSTVVMMFLEAQTIPGLIANMQRCTKPGG--YNLIVA  134 (198)
T ss_dssp             EEEESCGGGSCTTHHHHHHHHHHHTEEEEE--EEEEEE
T ss_pred             EEEeeeeecCCHHHHHHHHHHHHHHcCCCc--EEEEEE
Confidence            9999999884  456789999999999999  455443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=6e-15  Score=126.69  Aligned_cols=99  Identities=21%  Similarity=0.315  Sum_probs=77.3

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++++|||+|||+|..+..+++.  +.+|+|+|.++.|++.++++...+          ....+  ..+.+..+++||+|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~----------~~~~~--~~~l~~~~~~fD~i  106 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKN----------VVEAK--AEDLPFPSGAFEAV  106 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSC----------EEECC--TTSCCSCTTCEEEE
T ss_pred             CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccc----------ccccc--ccccccccccccce
Confidence            36789999999999999999875  569999999999999998752211          11222  23345556899999


Q ss_pred             EEc-CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          213 VAS-DCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       213 i~~-d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ++. +++++..+...+++.+.++|+|||  .+++..
T Consensus       107 i~~~~~~~~~~d~~~~l~~i~r~Lk~gG--~~ii~~  140 (246)
T d2avna1         107 LALGDVLSYVENKDKAFSEIRRVLVPDG--LLIATV  140 (246)
T ss_dssp             EECSSHHHHCSCHHHHHHHHHHHEEEEE--EEEEEE
T ss_pred             eeecchhhhhhhHHHHHHHHHhhcCcCc--EEEEEE
Confidence            984 688888889999999999999999  454443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.54  E-value=1.6e-14  Score=125.13  Aligned_cols=131  Identities=14%  Similarity=0.150  Sum_probs=98.7

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      ++.....+.+|.+|||+|||+|.+++.+|+.. +.++|+++|.++++++.+++|++.++.   ..++.+...|..+.   
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~---~~nv~~~~~Di~~~---  149 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIADF---  149 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTTC---
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC---CCceEEEEeeeecc---
Confidence            34555678899999999999999999999875 456999999999999999999988754   25677776665432   


Q ss_pred             CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEE
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~  269 (309)
                      ..+..||.|+. |    ..+...+++.+.++|||||  .++++.+. -+...+..+.+++.||...
T Consensus       150 ~~~~~fD~V~l-d----~p~p~~~l~~~~~~LKpGG--~lv~~~P~-i~Qv~~~~~~l~~~gf~~i  207 (250)
T d1yb2a1         150 ISDQMYDAVIA-D----IPDPWNHVQKIASMMKPGS--VATFYLPN-FDQSEKTVLSLSASGMHHL  207 (250)
T ss_dssp             CCSCCEEEEEE-C----CSCGGGSHHHHHHTEEEEE--EEEEEESS-HHHHHHHHHHSGGGTEEEE
T ss_pred             cccceeeeeee-c----CCchHHHHHHHHHhcCCCc--eEEEEeCC-cChHHHHHHHHHHCCCcee
Confidence            23568999997 3    3455678999999999999  55555553 2345678888899998643

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=5.1e-14  Score=123.53  Aligned_cols=147  Identities=17%  Similarity=0.211  Sum_probs=108.6

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      --|-++.|.+.++.... ..+.+|||||||+|..++.+|+..+..+|+++|+|+.+++.+++|+..+++.    ++.+..
T Consensus        90 PRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~----~v~~~~  164 (274)
T d2b3ta1          90 PRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK----NIHILQ  164 (274)
T ss_dssp             CCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC----SEEEEC
T ss_pred             cccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc----cceeee
Confidence            35666777776665432 3457899999999999999999999999999999999999999999999873    578877


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcc-------------------------cHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKE-------------------------FHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~-------------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      -||-..   ....+||+|+++.+.....                         .+..+++...++|+++|   .+++...
T Consensus       165 ~d~~~~---~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G---~l~lEig  238 (274)
T d2b3ta1         165 SDWFSA---LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGG---FLLLEHG  238 (274)
T ss_dssp             CSTTGG---GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEE---EEEEECC
T ss_pred             cccccc---cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCC---EEEEEEC
Confidence            777543   2346899999976654321                         24557788888999998   3443332


Q ss_pred             CCchHHHHHHHHHhCCCe-EEEEec
Q 021691          250 RGDSLDKFLEEIEGNHLH-FSIIEN  273 (309)
Q Consensus       250 r~~~~~~f~~~~~~~G~~-~~~~~~  273 (309)
                      . ...+...+.+++.||. ++...+
T Consensus       239 ~-~q~~~v~~~l~~~gf~~i~~~kD  262 (274)
T d2b3ta1         239 W-QQGEAVRQAFILAGYHDVETCRD  262 (274)
T ss_dssp             S-SCHHHHHHHHHHTTCTTCCEEEC
T ss_pred             c-hHHHHHHHHHHHCCCCeEEEEEC
Confidence            2 2346677788888985 444444

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=2.3e-14  Score=123.71  Aligned_cols=99  Identities=19%  Similarity=0.199  Sum_probs=78.5

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ...++++|||+|||+|..++.+++.  +.+|+|+|.|+.|++.+++++..++.     ++.+...++.+-.   ..++||
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~-----~i~~~~~d~~~l~---~~~~fD  107 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-----KIEFLQGDVLEIA---FKNEFD  107 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEESCGGGCC---CCSCEE
T ss_pred             cCCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccc-----cchheehhhhhcc---cccccc
Confidence            4456789999999999999998886  46999999999999999999988765     3566655554332   235899


Q ss_pred             EEEEcC-CCCCc--ccHHHHHHHHHHHHhcCC
Q 021691          211 VIVASD-CTFFK--EFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       211 vIi~~d-~ly~~--~~~~~ll~~l~~lLk~~G  239 (309)
                      +|++.. ++++.  ++...+++.++++|+|||
T Consensus       108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG  139 (251)
T d1wzna1         108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG  139 (251)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCc
Confidence            999964 44443  567789999999999999

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.52  E-value=6.4e-14  Score=121.98  Aligned_cols=138  Identities=10%  Similarity=0.040  Sum_probs=99.7

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      +.++......++++|||+|||+|.++..++... ..+|+++|.++.|++.++++....      ..+++...+..+  .+
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~------~~~~~~~~d~~~--~~  153 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM------PVGKFILASMET--AT  153 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS------SEEEEEESCGGG--CC
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhcccccc------ccceeEEccccc--cc
Confidence            334444444567899999999999998777653 458999999999999999775422      234554444332  23


Q ss_pred             CCCCCccEEEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeecC--------------CchHHHHHHHHHhCCCe
Q 021691          204 YIVDTFDVIVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPKR--------------GDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~r--------------~~~~~~f~~~~~~~G~~  267 (309)
                      ...++||+|++..+++|..+  ...+++.++++|+|+|  .+++.....              ..+.+.+.+.++++||+
T Consensus       154 ~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG--~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~  231 (254)
T d1xtpa_         154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNG--YIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVR  231 (254)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCC
T ss_pred             cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCc--EEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCE
Confidence            34578999999999999755  4588999999999999  555544211              12567889999999998


Q ss_pred             EEEEe
Q 021691          268 FSIIE  272 (309)
Q Consensus       268 ~~~~~  272 (309)
                      +...+
T Consensus       232 ii~~~  236 (254)
T d1xtpa_         232 VVKEA  236 (254)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            75443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.52  E-value=4.3e-14  Score=122.70  Aligned_cols=106  Identities=18%  Similarity=0.052  Sum_probs=82.9

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|++|||||||+|.....+++. +..+|+|+|.|+.|++.|+.+....+.   ..++.+...|...... ...++||+|
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~---~~~v~f~~~D~~~~~~-~~~~~fD~V   97 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKR---RFKVFFRAQDSYGRHM-DLGKEFDVI   97 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCC---SSEEEEEESCTTTSCC-CCSSCEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCC---CcceEEEEcchhhhcc-cccccceEE
Confidence            46889999999999888887775 556899999999999999998877655   2456666665433221 235689999


Q ss_pred             EEcCCCCCc----ccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          213 VASDCTFFK----EFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       213 i~~d~ly~~----~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      ++..++++.    .....+++.+.++|+|||  .+++
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG--~~i~  132 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGG--YFIM  132 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEE--EEEE
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeCCCC--EEEE
Confidence            999988874    456789999999999999  4544

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.51  E-value=5.3e-13  Score=112.67  Aligned_cols=126  Identities=19%  Similarity=0.197  Sum_probs=91.8

Q ss_pred             CceeecccHH-HHHHHHhh--CcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCC
Q 021691          111 GLVCHWPSED-VLAFFSLS--HADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGG  187 (309)
Q Consensus       111 G~~~~W~sa~-~La~~l~~--~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~  187 (309)
                      |++ .|+.-. .||..+..  ...+.+|.+|||||||+|.....+|...+..+|+|+|+++.|++.++++++..+     
T Consensus        31 ~~r-~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~-----  104 (209)
T d1nt2a_          31 GYR-EWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-----  104 (209)
T ss_dssp             TEE-ECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-----
T ss_pred             cee-eeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC-----
Confidence            566 888654 46666654  345678999999999999999999998887899999999999999999887653     


Q ss_pred             CceEEEEeeCCCCCCC-CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          188 TTVKSMTLHWNQDDFP-YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       188 ~~v~~~~l~w~~~~~~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                       ++.....+....... .....+|+|+. + +++..+...+++.+.++|||||  .++++.
T Consensus       105 -ni~~i~~d~~~~~~~~~~~~~vd~v~~-~-~~~~~~~~~~l~~~~~~LkpgG--~l~i~~  160 (209)
T d1nt2a_         105 -NIIPLLFDASKPWKYSGIVEKVDLIYQ-D-IAQKNQIEILKANAEFFLKEKG--EVVIMV  160 (209)
T ss_dssp             -SEEEECSCTTCGGGTTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEE--EEEEEE
T ss_pred             -CceEEEeeccCccccccccceEEEEEe-c-ccChhhHHHHHHHHHHHhccCC--eEEEEE
Confidence             344444443332211 22345666655 3 4556677889999999999999  555543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.50  E-value=2.4e-13  Score=118.37  Aligned_cols=133  Identities=17%  Similarity=0.100  Sum_probs=103.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .-..++|||||||+|..+..+++.+|..+++++|. |++++.+++++...+..   .++.+...+.-.   + ...+||+
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~---~ri~~~~~d~~~---~-~p~~~D~  150 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA---DRVTVAEGDFFK---P-LPVTADV  150 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT---TTEEEEECCTTS---C-CSCCEEE
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc---ceeeeeeeeccc---c-ccccchh
Confidence            34557999999999999999999999899999996 89999999999888763   456665554322   2 2346999


Q ss_pred             EEEcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeec-------------------------CCchHHHHHHHHHhC
Q 021691          212 IVASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPK-------------------------RGDSLDKFLEEIEGN  264 (309)
Q Consensus       212 Ii~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~-------------------------r~~~~~~f~~~~~~~  264 (309)
                      |++..++|+..+  ...+++.+++.|+|||  .+++....                         +..+.+++.+.++++
T Consensus       151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG--~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~A  228 (256)
T d1qzza2         151 VLLSFVLLNWSDEDALTILRGCVRALEPGG--RLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA  228 (256)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT
T ss_pred             hhccccccccCcHHHHHHHHHHHhhcCCcc--eeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHC
Confidence            999999987644  4678999999999999  66665421                         123567788899999


Q ss_pred             CCeEEEEecc
Q 021691          265 HLHFSIIENY  274 (309)
Q Consensus       265 G~~~~~~~~~  274 (309)
                      ||++..+...
T Consensus       229 Gf~~~~~~~~  238 (256)
T d1qzza2         229 GLALASERTS  238 (256)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCceeEEEEe
Confidence            9988766543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=6.4e-14  Score=122.62  Aligned_cols=134  Identities=13%  Similarity=0.047  Sum_probs=102.0

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +.++....++.+|++|||+|||+|.+++.+|+..+ .++|+++|.++++++.+++|++..++.   ..+.+..-|   ..
T Consensus        92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~---~~v~~~~~d---~~  165 (266)
T d1o54a_          92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI---ERVTIKVRD---IS  165 (266)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG---GGEEEECCC---GG
T ss_pred             HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc---cCcEEEecc---cc
Confidence            44555666788999999999999999999998764 579999999999999999999998763   344443332   22


Q ss_pred             CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691          202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      .......||.|+.     +..++...++.+.++|||||  .++++.+. -+..++..+.+++.||....
T Consensus       166 ~~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG--~lv~~~P~-~~Qv~~~~~~l~~~gF~~i~  226 (266)
T d1o54a_         166 EGFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGG--RFATVCPT-TNQVQETLKKLQELPFIRIE  226 (266)
T ss_dssp             GCCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEE--EEEEEESS-HHHHHHHHHHHHHSSEEEEE
T ss_pred             ccccccceeeeEe-----cCCCHHHHHHHHHhhcCCCC--EEEEEeCc-ccHHHHHHHHHHHCCceeEE
Confidence            2234567998876     34567788999999999999  66666553 34567888999999986433

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.4e-14  Score=119.16  Aligned_cols=163  Identities=11%  Similarity=-0.067  Sum_probs=108.9

Q ss_pred             ccccCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC
Q 021691          104 RCNIDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG  183 (309)
Q Consensus       104 ~~~~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~  183 (309)
                      ++..+.||+. .=.....|.+++.+.....+|++|||+|||+|..++.+|+.  +.+|+|+|+|+.+|+.++++......
T Consensus        16 ~~~~~~~~w~-~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~   92 (229)
T d2bzga1          16 KWVNGKTAFH-QEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYS   92 (229)
T ss_dssp             HHHHTCCTTC-CTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEE
T ss_pred             HHccCCCCCc-cCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhcccc
Confidence            3444666653 11234556677766555668899999999999999999986  67999999999999999887654321


Q ss_pred             C-------------CCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC--cccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          184 A-------------FGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF--KEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       184 ~-------------~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      .             .....+.+...|+.... +...+.||+|+...++++  ++..+..++.+.++|+|||  .+++...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG--~~~l~~~  169 (229)
T d2bzga1          93 EEPITEIPGTKVFKSSSGNISLYCCSIFDLP-RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKF--QYLLCVL  169 (229)
T ss_dssp             EEECTTSTTCEEEEETTSSEEEEESCGGGGG-GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEE--EEEEEEE
T ss_pred             ccchhcccccceeeecCCcEEEEEcchhhcc-ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcc--eEEEEEc
Confidence            0             01123444444332111 234578999999888876  4678899999999999999  4444432


Q ss_pred             cC----------CchHHHHHHHHHhCCCeEEEEec
Q 021691          249 KR----------GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       249 ~r----------~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                      ..          .-+.+++.+.+. .++.++.++.
T Consensus       170 ~~~~~~~~gpp~~~~~~el~~lf~-~~~~i~~le~  203 (229)
T d2bzga1         170 SYDPTKHPGPPFYVPHAEIERLFG-KICNIRCLEK  203 (229)
T ss_dssp             ECCTTTCCCSSCCCCHHHHHHHHT-TTEEEEEEEE
T ss_pred             ccCCCCCCCCCCCCCHHHHHHHhc-CCCEEEEEEE
Confidence            21          124455555554 4677766654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.6e-13  Score=115.60  Aligned_cols=134  Identities=16%  Similarity=0.142  Sum_probs=98.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC----CCCCCc
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP----YIVDTF  209 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~----~~~~~f  209 (309)
                      ...+|||+|||+|..++.+|+..+..+|+|+|+++++++.+++|++.|++.   .++.+...+|......    ...++|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~---~~~~~~~~~~~~~~~~~~~~~~~~~f  137 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS---DLIKVVKVPQKTLLMDALKEESEIIY  137 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT---TTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC---cceeeeeeccHHhhhhhhhhcccCce
Confidence            456999999999999999999988899999999999999999999999984   5677777666543221    234689


Q ss_pred             cEEEEcCCCCCcc-----------------------------------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchH
Q 021691          210 DVIVASDCTFFKE-----------------------------------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSL  254 (309)
Q Consensus       210 DvIi~~d~ly~~~-----------------------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~  254 (309)
                      |+|+|+.++|...                                   ....+++....+++..|   .+.+-..+....
T Consensus       138 D~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g---~~t~~ig~~~~l  214 (250)
T d2h00a1         138 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLR---WYSCMLGKKCSL  214 (250)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBS---CEEEEESSTTSH
T ss_pred             eEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCc---EEEEEecchhhH
Confidence            9999988877421                                   13334555566677777   333334456677


Q ss_pred             HHHHHHHHhCCCe-EEEEec
Q 021691          255 DKFLEEIEGNHLH-FSIIEN  273 (309)
Q Consensus       255 ~~f~~~~~~~G~~-~~~~~~  273 (309)
                      +...+.+++.|+. ++.++.
T Consensus       215 ~~i~~~L~~~g~~~i~~ie~  234 (250)
T d2h00a1         215 APLKEELRIQGVPKVTYTEF  234 (250)
T ss_dssp             HHHHHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHcCCCeEEEEEe
Confidence            8888899999984 555544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=1.3e-13  Score=115.82  Aligned_cols=119  Identities=13%  Similarity=0.128  Sum_probs=89.7

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||||||+|..+..+      .+++++|.++.+++.++++    +       +.+...+..  +.+..+++||+|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~------~~~~giD~s~~~~~~a~~~----~-------~~~~~~d~~--~l~~~~~~fD~I   95 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPL------KIKIGVEPSERMAEIARKR----G-------VFVLKGTAE--NLPLKDESFDFA   95 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHH------TCCEEEESCHHHHHHHHHT----T-------CEEEECBTT--BCCSCTTCEEEE
T ss_pred             CCCCeEEEECCCCccccccc------ceEEEEeCChhhccccccc----c-------ccccccccc--cccccccccccc
Confidence            34568999999999887654      2579999999999998863    2       233333332  334456899999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC----------------------CchHHHHHHHHHhCCCeEEE
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR----------------------GDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r----------------------~~~~~~f~~~~~~~G~~~~~  270 (309)
                      ++..++++..++..+++.+.++|+|||  .+++..+..                      ..+.+++.+.++++||+...
T Consensus        96 ~~~~~l~h~~d~~~~l~~~~~~L~pgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~  173 (208)
T d1vlma_          96 LMVTTICFVDDPERALKEAYRILKKGG--YLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK  173 (208)
T ss_dssp             EEESCGGGSSCHHHHHHHHHHHEEEEE--EEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             ccccccccccccccchhhhhhcCCCCc--eEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence            999999999999999999999999999  565555321                      12456788899999998654


Q ss_pred             Ee
Q 021691          271 IE  272 (309)
Q Consensus       271 ~~  272 (309)
                      +.
T Consensus       174 v~  175 (208)
T d1vlma_         174 VV  175 (208)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.47  E-value=3.5e-14  Score=114.09  Aligned_cols=102  Identities=18%  Similarity=0.232  Sum_probs=81.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      .+.|++|||+|||+|.+|+.++. .++.+|+++|.++.+++.+++|++.++..   .++++...|+... ......+||+
T Consensus        12 ~~~g~~vlDl~~GtG~~~iea~~-rga~~v~~ve~~~~a~~~~~~n~~~~~~~---~~~~ii~~D~~~~-l~~~~~~fDi   86 (152)
T d2esra1          12 YFNGGRVLDLFAGSGGLAIEAVS-RGMSAAVLVEKNRKAQAIIQDNIIMTKAE---NRFTLLKMEAERA-IDCLTGRFDL   86 (152)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHH-TTCCEEEEECCCHHHHHHHHHHHHTTTCG---GGEEEECSCHHHH-HHHBCSCEEE
T ss_pred             hCCCCeEEEcCCccCHHHHHHHH-hCcceeeeehhchhhhhhhhhhhhhcccc---cchhhhccccccc-ccccccccce
Confidence            36899999999999999998666 47789999999999999999999999873   4566666554321 1223578999


Q ss_pred             EEEcCCCCCcccHHHHHHHHHH--HHhcCC
Q 021691          212 IVASDCTFFKEFHKDLARIIKF--LLKKVG  239 (309)
Q Consensus       212 Ii~~d~ly~~~~~~~ll~~l~~--lLk~~G  239 (309)
                      |++ |+.|........+..+..  +|+++|
T Consensus        87 If~-DPPy~~~~~~~~l~~i~~~~~L~~~g  115 (152)
T d2esra1          87 VFL-DPPYAKETIVATIEALAAKNLLSEQV  115 (152)
T ss_dssp             EEE-CCSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             eEe-chhhccchHHHHHHHHHHCCCcCCCe
Confidence            999 888888888888887754  588888

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.7e-15  Score=125.87  Aligned_cols=143  Identities=18%  Similarity=0.153  Sum_probs=97.0

Q ss_pred             cccHH--HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          116 WPSED--VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       116 W~sa~--~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      |+...  .|+..+.     .+|++|||+|||+|..+..+++. ++.+|+++|+++.+++.++++......     .+...
T Consensus        38 w~~~~~~~la~~~~-----~~g~~VLdIGcG~G~~a~~~a~~-~~~~v~~id~s~~~~~~a~~~~~~~~~-----~~~~~  106 (229)
T d1zx0a1          38 WETPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTH-----KVIPL  106 (229)
T ss_dssp             GGHHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSS-----EEEEE
T ss_pred             HHHHHHHHHHHhhc-----cCCCeEEEeeccchHHHHHHHHc-CCCeEEEeCCCHHHHHHHHHHhhhccc-----ccccc
Confidence            76532  3454443     35889999999999999998875 456899999999999999998766543     34554


Q ss_pred             EeeCCCCCCCCCCCCccEEEE-----cCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec---------CCc----hHH
Q 021691          194 TLHWNQDDFPYIVDTFDVIVA-----SDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK---------RGD----SLD  255 (309)
Q Consensus       194 ~l~w~~~~~~~~~~~fDvIi~-----~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~---------r~~----~~~  255 (309)
                      ..++.........++||.|+.     ...+++..+.+.+++.++++|||||  .++++...         ...    ...
T Consensus       107 ~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG--~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (229)
T d1zx0a1         107 KGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGG--VLTYCNLTSWGELMKSKYSDITIMFEE  184 (229)
T ss_dssp             ESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEE--EEEECCHHHHHHHTTTTCSCHHHHHHH
T ss_pred             cccccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCc--EEEEEecCCcchhhhhhhhhcchhhhh
Confidence            444433333345678999874     3445556678889999999999999  55543311         011    112


Q ss_pred             HHHHHHHhCCCeEEEE
Q 021691          256 KFLEEIEGNHLHFSII  271 (309)
Q Consensus       256 ~f~~~~~~~G~~~~~~  271 (309)
                      .....+.++||+.+.+
T Consensus       185 ~~~~~l~~agF~~~~i  200 (229)
T d1zx0a1         185 TQVPALLEAGFRRENI  200 (229)
T ss_dssp             HTHHHHHHTTCCGGGE
T ss_pred             HHHHHHHHCCCeeEEE
Confidence            3445677888865433

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.46  E-value=6.7e-14  Score=120.78  Aligned_cols=97  Identities=14%  Similarity=0.106  Sum_probs=77.6

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++++|||+|||+|..++.+++.  +.+|+|+|.|+.|++.|++++..++.     ++++...|+....   ..++||+|
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~-----~v~~~~~d~~~~~---~~~~fD~i  105 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-----KPRLACQDISNLN---INRKFDLI  105 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-----CCEEECCCGGGCC---CSCCEEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCc-----cceeeccchhhhc---cccccccc
Confidence            45689999999999999999886  56999999999999999999887765     3566655554332   34689999


Q ss_pred             EEc-CCCC---CcccHHHHHHHHHHHHhcCC
Q 021691          213 VAS-DCTF---FKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       213 i~~-d~ly---~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +|. .+++   +.++...+++.++++|+|||
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  136 (246)
T d1y8ca_         106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG  136 (246)
T ss_dssp             EECTTGGGGCCSHHHHHHHHHHHHTTEEEEE
T ss_pred             ceeeeeeeccCCHHHHHHHHHHHHHhCCCCe
Confidence            985 3443   35677889999999999999

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=2.1e-13  Score=118.84  Aligned_cols=144  Identities=17%  Similarity=0.196  Sum_probs=101.8

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY  204 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~  204 (309)
                      +.....+.+|.+|||+|||+|.+++.+|+..+ ..+|+++|.++++++.+++|++...... ..++.+...|..+  .+.
T Consensus        88 Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~-~~nv~~~~~d~~~--~~~  164 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-PDNWRLVVSDLAD--SEL  164 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-CTTEEEECSCGGG--CCC
T ss_pred             HHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCC-CceEEEEeccccc--ccc
Confidence            44445677999999999999999999998854 5799999999999999999998743211 2356555554432  234


Q ss_pred             CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHH-hCCCeE-EEEeccCchhhhh
Q 021691          205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIE-GNHLHF-SIIENYNAEIWKR  281 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~-~~G~~~-~~~~~~~~~~~~~  281 (309)
                      .++.||.|+. |    ..++...+..+.++|||||  .++++.|.-. ...+..+.++ +.||.. +..|.. .+.|..
T Consensus       165 ~~~~fDaV~l-d----lp~P~~~l~~~~~~LkpGG--~lv~~~P~i~-Qv~~~~~~l~~~~~f~~i~~~E~l-~R~~~v  234 (264)
T d1i9ga_         165 PDGSVDRAVL-D----MLAPWEVLDAVSRLLVAGG--VLMVYVATVT-QLSRIVEALRAKQCWTEPRAWETL-QRGWNV  234 (264)
T ss_dssp             CTTCEEEEEE-E----SSCGGGGHHHHHHHEEEEE--EEEEEESSHH-HHHHHHHHHHHHSSBCCCEEECCC-CCCEEE
T ss_pred             cCCCcceEEE-e----cCCHHHHHHHHHhccCCCC--EEEEEeCccC-hHHHHHHHHHHcCCeecceEEEEE-EEEEEe
Confidence            4688999987 3    4566788999999999999  6666665443 3456667775 556653 444443 334543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=5.3e-14  Score=126.38  Aligned_cols=135  Identities=21%  Similarity=0.161  Sum_probs=98.0

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC--CCCCCCCCcc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD--DFPYIVDTFD  210 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~--~~~~~~~~fD  210 (309)
                      .+|++|||+|||+|..++.+|+  ++++|+++|.|+.+++.+++|++.|++.    ++++...|..+.  .......+||
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~----~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLG----NVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCT----TEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCC----CcceeeccHHHHhhhhHhhhcCCC
Confidence            4799999999999999998775  4789999999999999999999999983    455555543211  0112346899


Q ss_pred             EEEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHH----HHhCCCeEEEEeccC
Q 021691          211 VIVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEE----IEGNHLHFSIIENYN  275 (309)
Q Consensus       211 vIi~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~----~~~~G~~~~~~~~~~  275 (309)
                      +|++..+.+..         ..+..++..+.++|+|||  .++++++...-+.+.|.+.    +.++|-.+..++...
T Consensus       218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG--~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~~~~  293 (318)
T d1wxxa2         218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGG--ILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRG  293 (318)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEE--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCC--EEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            99995554432         235568888899999999  6666666655566666654    456677776666533

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.1e-13  Score=118.83  Aligned_cols=131  Identities=12%  Similarity=0.120  Sum_probs=90.9

Q ss_pred             CCeEEEeCCCCChhhHHHHHhc----CC--cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEE--EEeeCCC----CCC
Q 021691          135 SKRVIELGSGYGLAGLVIAATT----EA--LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKS--MTLHWNQ----DDF  202 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~----~~--~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~--~~l~w~~----~~~  202 (309)
                      +.+|||+|||+|.++..+++.+    ++  .+++++|.++.|++.+++++.....   ...+.+  ...++..    ...
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN---LENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS---CTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc---cccccccchhhhhhhhcchhcc
Confidence            3489999999999888776542    22  3689999999999999998765432   122322  2221110    012


Q ss_pred             CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCC----------------------chHHHHHHH
Q 021691          203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRG----------------------DSLDKFLEE  260 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~----------------------~~~~~f~~~  260 (309)
                      ....++||+|++..++|+..++..+++.+.++|+|||  .+++......                      .+...+.+.
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG--~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  195 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNA--KMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQM  195 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEE--EEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHH
T ss_pred             cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCC--EEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHH
Confidence            3346789999999999999999999999999999999  5555443211                      223456677


Q ss_pred             HHhCCCeEEE
Q 021691          261 IEGNHLHFSI  270 (309)
Q Consensus       261 ~~~~G~~~~~  270 (309)
                      +++.|+.++.
T Consensus       196 L~~~G~~~~~  205 (280)
T d1jqea_         196 LDNLGLKYEC  205 (280)
T ss_dssp             HHHHTCCEEE
T ss_pred             HHHCCCceEE
Confidence            7888887544

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=1.3e-12  Score=109.50  Aligned_cols=129  Identities=12%  Similarity=0.051  Sum_probs=82.1

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      .....|++|||+|||+|.+++.++. .|+.+|+++|+++.+++.+++|+..++.     ...+...|.     .....+|
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~-~g~~~v~~vdi~~~~~~~a~~N~~~~~~-----~~~~~~~d~-----~~~~~~f  110 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALL-LGAKEVICVEVDKEAVDVLIENLGEFKG-----KFKVFIGDV-----SEFNSRV  110 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHTGGGTT-----SEEEEESCG-----GGCCCCC
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHH-cCCCEEEEEcCcHHHHHHHHHHHHHcCC-----CceEEECch-----hhhCCcC
Confidence            3456899999999999999998665 5677999999999999999999888765     234443332     2235689


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIE  272 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~  272 (309)
                      |+|+++.+ |.......-...+...+...+  .+...+........-+.....+.|+.++...
T Consensus       111 D~Vi~nPP-~~~~~~~~d~~~l~~~~~~~~--~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~~  170 (201)
T d1wy7a1         111 DIVIMNPP-FGSQRKHADRPFLLKAFEISD--VVYSIHLAKPEVRRFIEKFSWEHGFVVTHRL  170 (201)
T ss_dssp             SEEEECCC-CSSSSTTTTHHHHHHHHHHCS--EEEEEEECCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             cEEEEcCc-cccccccccHHHHHHHHhhcc--cchhcccchHHHHHHHHHHHhhcCceEEEEE
Confidence            99999554 443221111223344455555  2323332233333334455677888765543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=4.3e-13  Score=120.24  Aligned_cols=107  Identities=21%  Similarity=0.285  Sum_probs=83.5

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      +..+...++|++|||||||+|.+++.+|+ .|+.+|+++|.++. ...+++++..|+..   .++.+...+..+.  +..
T Consensus        25 i~~~~~~~~~~~VLDiGcG~G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~---~~v~~~~~~~~~~--~~~   97 (316)
T d1oria_          25 MFHNRHLFKDKVVLDVGSGTGILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLD---HVVTIIKGKVEEV--ELP   97 (316)
T ss_dssp             HHTCHHHHTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCT---TTEEEEESCTTTC--CCS
T ss_pred             HHhccccCCcCEEEEEecCCcHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCc---cccceEeccHHHc--ccc
Confidence            44555677999999999999999998777 57789999999875 57778888889884   4677766554433  334


Q ss_pred             CCCccEEEEcCCC---CCcccHHHHHHHHHHHHhcCC
Q 021691          206 VDTFDVIVASDCT---FFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       206 ~~~fDvIi~~d~l---y~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .++||+|++..+.   ++...++.++..+.++|+|+|
T Consensus        98 ~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G  134 (316)
T d1oria_          98 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDG  134 (316)
T ss_dssp             SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEE
T ss_pred             cceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCe
Confidence            5789999985443   445678999999999999999

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=4.1e-13  Score=120.99  Aligned_cols=107  Identities=16%  Similarity=0.276  Sum_probs=83.8

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      +..+...++|++|||||||+|.+++.+|+ .|+.+|+++|.++ ++..+++++..|+..   .++.+...+..+  .+.+
T Consensus        30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~---~~i~~i~~~~~~--l~~~  102 (328)
T d1g6q1_          30 IIQNKDLFKDKIVLDVGCGTGILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFS---DKITLLRGKLED--VHLP  102 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCT---TTEEEEESCTTT--SCCS
T ss_pred             HHhccccCCcCEEEEeCCCCCHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCcc---ccceEEEeehhh--ccCc
Confidence            33344556899999999999999998766 5778999999886 678899999998873   567766665443  3344


Q ss_pred             CCCccEEEEcCC---CCCcccHHHHHHHHHHHHhcCC
Q 021691          206 VDTFDVIVASDC---TFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       206 ~~~fDvIi~~d~---ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .++||+|++..+   +.+....+.++....++|||||
T Consensus       103 ~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG  139 (328)
T d1g6q1_         103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGG  139 (328)
T ss_dssp             SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEE
T ss_pred             ccceeEEEEEecceeeccchhHHHHHHHHHhccCCCe
Confidence            578999999554   3456778899999999999999

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=120.78  Aligned_cols=141  Identities=16%  Similarity=0.155  Sum_probs=97.3

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCC----------------------
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGG----------------------  187 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~----------------------  187 (309)
                      ....+|++|||+|||+|..++..+... ..+|+++|+++.|++.+++++......+.-                      
T Consensus        50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  128 (263)
T d2g72a1          50 TGEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER  128 (263)
T ss_dssp             TSCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred             CCCCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence            355689999999999998876555443 569999999999999999887654322110                      


Q ss_pred             ---Cce-EEEEeeCCCCC----CCCCCCCccEEEEcCCCCCc----ccHHHHHHHHHHHHhcCCCeEEEEEeecC-----
Q 021691          188 ---TTV-KSMTLHWNQDD----FPYIVDTFDVIVASDCTFFK----EFHKDLARIIKFLLKKVGPSEALFFSPKR-----  250 (309)
Q Consensus       188 ---~~v-~~~~l~w~~~~----~~~~~~~fDvIi~~d~ly~~----~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-----  250 (309)
                         ..+ .+...|.....    .....++||+|++..++++.    +++..+++.+.++|||||  .+++....+     
T Consensus       129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG--~li~~~~~~~~~~~  206 (263)
T d2g72a1         129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGG--HLLLIGALEESWYL  206 (263)
T ss_dssp             HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEE--EEEEEEEESCCEEE
T ss_pred             HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCC--EEEEecccCCcccc
Confidence               001 11111211111    12234689999999988764    367889999999999999  555544321     


Q ss_pred             ---------CchHHHHHHHHHhCCCeEEEEec
Q 021691          251 ---------GDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       251 ---------~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                               .-+.+.+.+.++++||.+...+.
T Consensus       207 ~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~  238 (263)
T d2g72a1         207 AGEARLTVVPVSEEEVREALVRSGYKVRDLRT  238 (263)
T ss_dssp             ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCCcccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence                     23678899999999999876554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.41  E-value=2.2e-12  Score=112.36  Aligned_cols=126  Identities=12%  Similarity=0.134  Sum_probs=93.5

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .+|.+|||+|||+|.+++.+|+. ++++|+++|.||.+++.+++|++.|++.   .++.+...|....   ...+.||.|
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~---~~v~~~~~D~~~~---~~~~~~D~I  178 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVE---DRMSAYNMDNRDF---PGENIADRI  178 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCT---TTEEEECSCTTTC---CCCSCEEEE
T ss_pred             CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCC---ceEEEEEcchHHh---ccCCCCCEE
Confidence            47899999999999999998876 5679999999999999999999999984   4677766654322   224679999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe--ec---CCchHHHHHHHHHhCCCeEEEE
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS--PK---RGDSLDKFLEEIEGNHLHFSII  271 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~--~~---r~~~~~~f~~~~~~~G~~~~~~  271 (309)
                      ++.++.+..    .++..+.++|++||  .+.+..  ..   .....+.+.+.++..|+.++..
T Consensus       179 i~~~p~~~~----~~l~~a~~~l~~gG--~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~  236 (260)
T d2frna1         179 LMGYVVRTH----EFIPKALSIAKDGA--IIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL  236 (260)
T ss_dssp             EECCCSSGG----GGHHHHHHHEEEEE--EEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred             EECCCCchH----HHHHHHHhhcCCCC--EEEEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence            997665443    34566778899998  332222  22   1334566777888899987643

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.40  E-value=2.1e-12  Score=108.44  Aligned_cols=129  Identities=12%  Similarity=0.068  Sum_probs=94.2

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      +-.|||||||+|...+.+|+..+...++|+|.++.++..+.+++..+++    .++.+...|.........++++|.|+.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l----~Nv~~~~~Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA----QNVKLLNIDADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC----SSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc----cCchhcccchhhhhcccCchhhhcccc
Confidence            3479999999999999999999999999999999999999999999887    357666665332111234678999888


Q ss_pred             cCCCCCcccH--------HHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691          215 SDCTFFKEFH--------KDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       215 ~d~ly~~~~~--------~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      ..+..+....        +.+++.+.++|||||  .+.+. +....-.+...+.+.+.++....
T Consensus       106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG--~l~i~-TD~~~y~~~~~~~~~~~~~~~~~  166 (204)
T d2fcaa1         106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGG--SIHFK-TDNRGLFEYSLKSFSEYGLLLTY  166 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSC--EEEEE-ESCHHHHHHHHHHHHHHTCEEEE
T ss_pred             ccccccchhhhcchhhhHHHHHHHHHHhCCCCc--EEEEE-ECChHHHHHHHHHHHHCCCcccc
Confidence            6655544332        689999999999999  44444 33323334455666666665443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1e-13  Score=122.88  Aligned_cols=109  Identities=14%  Similarity=0.171  Sum_probs=79.3

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-CCCCCCccE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-PYIVDTFDV  211 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~~~~~~fDv  211 (309)
                      ..+++|||+|||+|..++.+|+.  +.+|+|+|.|+.||+.|+++...++.........+...+|...+. .....+||+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~  132 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  132 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence            35789999999999999999886  569999999999999999998876653211223444555532211 123468999


Q ss_pred             EEEcC-CCCCc-------ccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          212 IVASD-CTFFK-------EFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       212 Ii~~d-~ly~~-------~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      |++.. ++.+.       .+...+++.+.++|+|||  .+++
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~li~  172 (292)
T d1xvaa_         133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG--LLVI  172 (292)
T ss_dssp             EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEE--EEEE
T ss_pred             EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCc--EEEE
Confidence            99854 44442       357789999999999999  4444

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.39  E-value=2.7e-13  Score=122.08  Aligned_cols=154  Identities=17%  Similarity=0.128  Sum_probs=106.1

Q ss_pred             CCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691          109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGT  188 (309)
Q Consensus       109 ~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~  188 (309)
                      .||+.   .-...--.++...  ..+|++|||+|||+|..++.+|+. ++.+|+++|.++.+++.+++|+..|++.   .
T Consensus       125 ~tG~f---lDqr~~r~~~~~~--~~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~---~  195 (324)
T d2as0a2         125 KTGFF---LDQRENRLALEKW--VQPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVE---D  195 (324)
T ss_dssp             SSCCC---STTHHHHHHHGGG--CCTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCG---G
T ss_pred             ccCcc---cchhhHHHHHHhh--cCCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCC---c
Confidence            57764   2333333444332  246899999999999999997764 6779999999999999999999999984   3


Q ss_pred             ceEEEEeeCCCC--CCCCCCCCccEEEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHH
Q 021691          189 TVKSMTLHWNQD--DFPYIVDTFDVIVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKF  257 (309)
Q Consensus       189 ~v~~~~l~w~~~--~~~~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f  257 (309)
                      ++++...|..+.  .......+||+|++..+.+..         ..+..++....++|+|||  .++++++...-+.++|
T Consensus       196 ~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG--~lv~~s~s~~~~~~~f  273 (324)
T d2as0a2         196 RMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGG--ILVTCSCSQHVDLQMF  273 (324)
T ss_dssp             GEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEE--EEEEEECCTTSCHHHH
T ss_pred             cceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCc--EEEEEeCCccCCHHHH
Confidence            555544432110  011234689999994443332         235668888889999999  6777777766677777


Q ss_pred             HHHH----HhCCCeEEEEec
Q 021691          258 LEEI----EGNHLHFSIIEN  273 (309)
Q Consensus       258 ~~~~----~~~G~~~~~~~~  273 (309)
                      .+.+    .+.|-.++.++.
T Consensus       274 ~~~v~~a~~~~gr~~~~~~~  293 (324)
T d2as0a2         274 KDMIIAAGAKAGKFLKMLEP  293 (324)
T ss_dssp             HHHHHHHHHHTTEEEEESSC
T ss_pred             HHHHHHHHHHcCCeEEEeee
Confidence            7654    455666665543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.39  E-value=1.8e-13  Score=113.18  Aligned_cols=120  Identities=8%  Similarity=0.039  Sum_probs=84.4

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCC--------CCCceEEE
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAF--------GGTTVKSM  193 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~--------~~~~v~~~  193 (309)
                      |-+|+.. ..+.+|.+|||+|||+|..++.+|+.  +.+|+|+|+|+.|++.+++++...+...        ....+.+.
T Consensus         9 ~~~~~~~-l~~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (201)
T d1pjza_           9 LQQYWSS-LNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   85 (201)
T ss_dssp             HHHHHHH-HCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHHHH-cCCCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence            4444433 35668999999999999999999987  6799999999999999999875433210        01122333


Q ss_pred             EeeCCCCCCCCCCCCccEEEEcCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          194 TLHWNQDDFPYIVDTFDVIVASDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       194 ~l~w~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..++.... +.....||+|+++.++++.  ......++.+.++|||||  .+++..
T Consensus        86 ~~d~~~l~-~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG--~l~l~~  138 (201)
T d1pjza_          86 CGDFFALT-ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQAC--SGLLIT  138 (201)
T ss_dssp             EECCSSST-HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEE--EEEEEE
T ss_pred             cccccccc-cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCc--EEEEEE
Confidence            33332111 1123579999999888775  357889999999999999  444433

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=2.2e-13  Score=111.48  Aligned_cols=115  Identities=17%  Similarity=0.203  Sum_probs=77.4

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC-
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ-  199 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~-  199 (309)
                      .|..++..  ...+|++|||+|||+|.+|+.++..  +++|+++|.++.+++.+++|++.+++.   .++  ...+.+. 
T Consensus        30 ~lf~~l~~--~~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~---~~v--~~~~~d~~  100 (171)
T d1ws6a1          30 ALFDYLRL--RYPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLG---ARV--VALPVEVF  100 (171)
T ss_dssp             HHHHHHHH--HCTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCC---CEE--ECSCHHHH
T ss_pred             HHHHHhhc--cccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccc---cce--eeeehhcc
Confidence            44555543  2357889999999999999987665  458999999999999999999999884   233  2222110 


Q ss_pred             -CCCCCCCCCccEEEEcCCCCCcccHHHHHHHH-HHHHhcCCCeEEEEEe
Q 021691          200 -DDFPYIVDTFDVIVASDCTFFKEFHKDLARII-KFLLKKVGPSEALFFS  247 (309)
Q Consensus       200 -~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l-~~lLk~~G~~~~ii~~  247 (309)
                       ........+||+|++ |+.|..+....+...+ ..+|+++|  .+++-+
T Consensus       101 ~~~~~~~~~~fD~If~-DPPY~~~~~~~l~~l~~~~ll~~~g--~ivie~  147 (171)
T d1ws6a1         101 LPEAKAQGERFTVAFM-APPYAMDLAALFGELLASGLVEAGG--LYVLQH  147 (171)
T ss_dssp             HHHHHHTTCCEEEEEE-CCCTTSCTTHHHHHHHHHTCEEEEE--EEEEEE
T ss_pred             cccccccCCccceeEE-ccccccCHHHHHHHHHHcCCcCCCe--EEEEEe
Confidence             001123468999999 7778765544443333 24688888  444433

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-12  Score=117.53  Aligned_cols=144  Identities=17%  Similarity=0.107  Sum_probs=96.1

Q ss_pred             CcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccC-------CCCCCceEEEEeeCCCC
Q 021691          129 HADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSG-------AFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       129 ~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~-------~~~~~~v~~~~l~w~~~  200 (309)
                      ..++.+|.+|||+|||+|.+++.+|+..+ .++|+++|.++++++.+++|++..+.       .....++.+...|....
T Consensus        93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~  172 (324)
T d2b25a1          93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  172 (324)
T ss_dssp             HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence            34677899999999999999999998764 56999999999999999999986532       11134566666655443


Q ss_pred             CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC--CCeEEEEeccCchh
Q 021691          201 DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN--HLHFSIIENYNAEI  278 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~--G~~~~~~~~~~~~~  278 (309)
                      ........||.|+. |+.    ++...+..+.++|||||  .++++.|.- ....+..+.++..  ||....+...-.+.
T Consensus       173 ~~~~~~~~fD~V~L-D~p----~P~~~l~~~~~~LKpGG--~lv~~~P~i-~Qv~~~~~~l~~~~~~f~~i~~~E~~~R~  244 (324)
T d2b25a1         173 TEDIKSLTFDAVAL-DML----NPHVTLPVFYPHLKHGG--VCAVYVVNI-TQVIELLDGIRTCELALSCEKISEVIVRD  244 (324)
T ss_dssp             C-------EEEEEE-CSS----STTTTHHHHGGGEEEEE--EEEEEESSH-HHHHHHHHHHHHHTCCEEEEEEECCCCCC
T ss_pred             ccccCCCCcceEee-cCc----CHHHHHHHHHHhccCCC--EEEEEeCCH-HHHHHHHHHHHHcCCCceeeEEEEEEeee
Confidence            33334568999987 543    34457889999999999  666666533 2345677777754  45433322222344


Q ss_pred             hh
Q 021691          279 WK  280 (309)
Q Consensus       279 ~~  280 (309)
                      |.
T Consensus       245 w~  246 (324)
T d2b25a1         245 WL  246 (324)
T ss_dssp             EE
T ss_pred             eE
Confidence            54

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=3.7e-12  Score=108.63  Aligned_cols=152  Identities=14%  Similarity=0.136  Sum_probs=102.4

Q ss_pred             CCCCceeecccHH-HHHHHHhh---CcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhcc
Q 021691          108 DNTGLVCHWPSED-VLAFFSLS---HADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANS  182 (309)
Q Consensus       108 ~~tG~~~~W~sa~-~La~~l~~---~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~  182 (309)
                      +...++ .|+.-. .||..++.   +..+.+|.+|||||||+|..+..+|...+ .++|+++|.++.+++.++++++..+
T Consensus        44 ~~~e~R-~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~  122 (227)
T d1g8aa_          44 EGEEYR-IWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR  122 (227)
T ss_dssp             TTEEEE-ECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT
T ss_pred             CCeeEE-EECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC
Confidence            344566 887632 36655654   34577999999999999999999999874 5799999999999999998876543


Q ss_pred             CCCCCCceEEEEeeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-------CchH
Q 021691          183 GAFGGTTVKSMTLHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-------GDSL  254 (309)
Q Consensus       183 ~~~~~~~v~~~~l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-------~~~~  254 (309)
                      .      +.....+-.... .......+|+|++ |+ .+......+++.++++|++||  .++++...+       +...
T Consensus       123 ~------~~~i~~d~~~~~~~~~~~~~vD~i~~-d~-~~~~~~~~~l~~~~~~LkpgG--~lvi~~ka~~~~~~~~~~~v  192 (227)
T d1g8aa_         123 N------IVPILGDATKPEEYRALVPKVDVIFE-DV-AQPTQAKILIDNAEVYLKRGG--YGMIAVKSRSIDVTKEPEQV  192 (227)
T ss_dssp             T------EEEEECCTTCGGGGTTTCCCEEEEEE-CC-CSTTHHHHHHHHHHHHEEEEE--EEEEEEEGGGTCTTSCHHHH
T ss_pred             C------ceEEEEECCCcccccccccceEEEEE-Ec-cccchHHHHHHHHHHhcccCC--eEEEEEECCccCCCCCHHHH
Confidence            2      333333332222 1233467898887 44 445667889999999999999  455443221       1222


Q ss_pred             HHHHHHHHhCCCeEEE
Q 021691          255 DKFLEEIEGNHLHFSI  270 (309)
Q Consensus       255 ~~f~~~~~~~G~~~~~  270 (309)
                      .+..+.+.+.||....
T Consensus       193 ~~~v~~l~~~gf~iie  208 (227)
T d1g8aa_         193 FREVERELSEYFEVIE  208 (227)
T ss_dssp             HHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHcCCEEEE
Confidence            2334455667888643

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=1.7e-12  Score=109.84  Aligned_cols=112  Identities=18%  Similarity=0.108  Sum_probs=82.7

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ..+...+++...+.+|.+|||+|||+|..+..+|+..+ ..+|+++|.++++++.+++|++..+..    ++.....+-.
T Consensus        61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~----n~~~~~~d~~  136 (213)
T d1dl5a1          61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE----NVIFVCGDGY  136 (213)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEESCGG
T ss_pred             chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc----ccccccCchH
Confidence            34333455556788999999999999999999998765 468999999999999999999988773    4444433221


Q ss_pred             CCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          199 QDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       199 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                        ......++||+|++...+++..      +.+.+.|+|||  .+++
T Consensus       137 --~~~~~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG--~lv~  173 (213)
T d1dl5a1         137 --YGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGG--RVIV  173 (213)
T ss_dssp             --GCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEE--EEEE
T ss_pred             --HccccccchhhhhhhccHHHhH------HHHHHhcCCCc--EEEE
Confidence              1122346899999988777643      34677899999  4444

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.3e-12  Score=115.05  Aligned_cols=109  Identities=19%  Similarity=0.266  Sum_probs=81.7

Q ss_pred             HHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          124 FFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       124 ~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      +.+..+...++|++|||||||+|.+++.+|+ .|+.+|+++|.++.+.. +++++..|+..   .++.+...+..  +..
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~-~Ga~~V~aid~s~~~~~-a~~~~~~~~~~---~~i~~~~~~~~--~l~   97 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAK-AGAKKVLGVDQSEILYQ-AMDIIRLNKLE---DTITLIKGKIE--EVH   97 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEESSTHHHH-HHHHHHHTTCT---TTEEEEESCTT--TSC
T ss_pred             HHHHhccccCCcCEEEEECCCCCHHHHHHHH-cCCCEEEEEeCHHHHHH-HHHHHHHhCCC---ccceEEEeeHH--Hhc
Confidence            3455666778999999999999999998777 47789999999998764 55666666663   46666655443  333


Q ss_pred             CCCCCccEEEEcCCCCC---cccHHHHHHHHHHHHhcCC
Q 021691          204 YIVDTFDVIVASDCTFF---KEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~---~~~~~~ll~~l~~lLk~~G  239 (309)
                      ....+||+|++....+.   ....+.++....++|+|||
T Consensus        98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G  136 (311)
T d2fyta1          98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGG  136 (311)
T ss_dssp             CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEE
T ss_pred             CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCc
Confidence            44578999999543333   4567788888999999999

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.34  E-value=2.4e-12  Score=115.19  Aligned_cols=154  Identities=15%  Similarity=0.041  Sum_probs=103.5

Q ss_pred             cCCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC
Q 021691          107 IDNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG  186 (309)
Q Consensus       107 ~~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~  186 (309)
                      .-.||+.  .+-...-..++.   ...+|++|||++||+|.+|+.+++ .++.+|+++|.++.+++.+++|++.|++.. 
T Consensus       122 g~ktGlf--lDqR~~r~~l~~---~~~~g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~-  194 (317)
T d2b78a2         122 GLMTGIF--LDQRQVRNELIN---GSAAGKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANHLDM-  194 (317)
T ss_dssp             SSCCSSC--GGGHHHHHHHHH---TTTBTCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTTCCC-
T ss_pred             ccccCCc--HHHHHHHHHHHH---HhhCCCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHHhcccC-
Confidence            4578874  232222222332   234799999999999999998655 577799999999999999999999999853 


Q ss_pred             CCceEEEEeeCCCC--CCCCCCCCccEEEEcCCCCCc---------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHH
Q 021691          187 GTTVKSMTLHWNQD--DFPYIVDTFDVIVASDCTFFK---------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLD  255 (309)
Q Consensus       187 ~~~v~~~~l~w~~~--~~~~~~~~fDvIi~~d~ly~~---------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~  255 (309)
                       .++++...|.-..  .......+||+|++..+.+..         .++..++..+.++|+|||  .++++++...-+.+
T Consensus       195 -~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG--~l~~~scs~~~~~~  271 (317)
T d2b78a2         195 -ANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENG--LIIASTNAANMTVS  271 (317)
T ss_dssp             -TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEE--EEEEEECCTTSCHH
T ss_pred             -cceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCC--EEEEEeCCccCCHH
Confidence             3455544432110  001124689999995454431         346779999999999999  67776766666667


Q ss_pred             HHHHHHH----hCCCeEEE
Q 021691          256 KFLEEIE----GNHLHFSI  270 (309)
Q Consensus       256 ~f~~~~~----~~G~~~~~  270 (309)
                      .|.+.+.    +.|..+..
T Consensus       272 ~f~~~v~~a~~~~~~~~~~  290 (317)
T d2b78a2         272 QFKKQIEKGFGKQKHTYLD  290 (317)
T ss_dssp             HHHHHHHHHHTTCCCEEEE
T ss_pred             HHHHHHHHHHHHcCCeEEE
Confidence            7765543    44555443

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.32  E-value=2.9e-11  Score=101.31  Aligned_cols=128  Identities=15%  Similarity=0.080  Sum_probs=94.3

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      ..|||||||+|...+.+|+..+...++|+|+++.++..+.+++..+++    .++.+...+...-.......++|.|+..
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l----~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV----PNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc----ccceeeecCHHHHhhhccCCceehhccc
Confidence            479999999999999999999999999999999999999999999887    3677777765543223456789999876


Q ss_pred             CCCCCccc--------HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEE
Q 021691          216 DCTFFKEF--------HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       216 d~ly~~~~--------~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      .+-.++..        .+.+++.+.++|+|||  .+.+.+ ....-.+...+.+.+.++....
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG--~l~i~T-D~~~Y~~~~le~~~~~~~~~~~  168 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENG--EIHFKT-DNRGLFEYSLVSFSQYGMKLNG  168 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTC--EEEEEE-SCHHHHHHHHHHHHHHTCEEEE
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCc--EEEEEE-CCccHHHHHHHHHHHCCccccc
Confidence            55444332        2789999999999999  444433 2222233344556666766543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=3.7e-12  Score=105.19  Aligned_cols=100  Identities=10%  Similarity=0.123  Sum_probs=77.4

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ..+++||||+||+|.+|+.++. .|+.+|+++|.++.+++.+++|++.++..    ++.+...|.... ......+||+|
T Consensus        42 ~~~~~vLDlfaGsG~~gieals-rGa~~v~~VE~~~~a~~~~k~N~~~~~~~----~~~ii~~d~~~~-l~~~~~~fDlI  115 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALS-RYAAGATLIEMDRAVSQQLIKNLATLKAG----NARVVNSNAMSF-LAQKGTPHNIV  115 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHHHHTTCC----SEEEECSCHHHH-HSSCCCCEEEE
T ss_pred             cchhhhhhhhccccceeeeEEe-cCcceeEEEEEeechhhHHHHHHhhcccc----ceeeeeeccccc-ccccccccCEE
Confidence            5788999999999999999666 47889999999999999999999987652    344433322111 11235689999


Q ss_pred             EEcCCCCCcccHHHHHHHHHH--HHhcCC
Q 021691          213 VASDCTFFKEFHKDLARIIKF--LLKKVG  239 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~--lLk~~G  239 (309)
                      ++ |+.|.....+.++..+.+  +|+++|
T Consensus       116 f~-DPPY~~~~~~~~l~~l~~~~~L~~~~  143 (183)
T d2fpoa1         116 FV-DPPFRRGLLEETINLLEDNGWLADEA  143 (183)
T ss_dssp             EE-CCSSSTTTHHHHHHHHHHTTCEEEEE
T ss_pred             EE-cCccccchHHHHHHHHHHCCCCCCCe
Confidence            99 888988888888888876  588887

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1e-11  Score=108.53  Aligned_cols=98  Identities=14%  Similarity=0.157  Sum_probs=76.2

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      .++.+|||+|||+|..+..+++..+..+|+++|+++.|++.++++.         .++.+...+..  ..+..+++||+|
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---------~~~~~~~~d~~--~l~~~~~sfD~v  151 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSH--RLPFSDTSMDAI  151 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTT--SCSBCTTCEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---------ccccceeeehh--hccCCCCCEEEE
Confidence            4677999999999999999999887889999999999999987652         13444444433  345567899999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      ++...+++       ++++.++|||||  .+++..+..
T Consensus       152 ~~~~~~~~-------~~e~~rvLkpgG--~l~~~~p~~  180 (268)
T d1p91a_         152 IRIYAPCK-------AEELARVVKPGG--WVITATPGP  180 (268)
T ss_dssp             EEESCCCC-------HHHHHHHEEEEE--EEEEEEECT
T ss_pred             eecCCHHH-------HHHHHHHhCCCc--EEEEEeeCC
Confidence            99877665       467899999999  666666543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.28  E-value=7.2e-12  Score=111.12  Aligned_cols=160  Identities=16%  Similarity=0.071  Sum_probs=99.8

Q ss_pred             ccccCCCCcee-ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhcc
Q 021691          104 RCNIDNTGLVC-HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANS  182 (309)
Q Consensus       104 ~~~~~~tG~~~-~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~  182 (309)
                      ...+..||+.+ .-+.-..+++++..   ..+|++||||+||+|.+++.+|+.  +++|+++|.++.+++.+++|++.|+
T Consensus       104 ~~~~~~tG~f~dqr~nr~~~~~~~~~---~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~  178 (309)
T d2igta1         104 FTAFRHVGVFPEQIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAG  178 (309)
T ss_dssp             CCSSSCCSCCGGGHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHT
T ss_pred             ccCCCccccccchhHHHHHHHHHHhh---ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhc
Confidence            45567888751 01111222333332   336899999999999999987764  4589999999999999999999999


Q ss_pred             CCCCCCceEEEEeeCCCCC--CCCCCCCccEEEEcCCCCC----------cccHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          183 GAFGGTTVKSMTLHWNQDD--FPYIVDTFDVIVASDCTFF----------KEFHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       183 ~~~~~~~v~~~~l~w~~~~--~~~~~~~fDvIi~~d~ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                      +..  .++++..-|.....  ......+||+||+..+-|.          ...+..++..+..+|+++|  .+++++...
T Consensus       179 ~~~--~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g--~~ll~t~~s  254 (309)
T d2igta1         179 LEQ--APIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKA--LGLVLTAYS  254 (309)
T ss_dssp             CTT--SCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTC--CEEEEEECC
T ss_pred             ccC--CcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCC--CEEEEecCC
Confidence            852  24555443321100  0112468999999544442          1345678888999999998  444444332


Q ss_pred             -CchHHHHHH----HHHhCCCeEEEEe
Q 021691          251 -GDSLDKFLE----EIEGNHLHFSIIE  272 (309)
Q Consensus       251 -~~~~~~f~~----~~~~~G~~~~~~~  272 (309)
                       ..+...|.+    .+...|-.++..+
T Consensus       255 ~~~s~~~~~~~~~~~~~~ag~~v~~~e  281 (309)
T d2igta1         255 IRASFYSMHELMRETMRGAGGVVASGE  281 (309)
T ss_dssp             TTSCHHHHHHHHHHHTTTSCSEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHhcCCcceeeE
Confidence             223333333    3445566665443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.26  E-value=3.2e-12  Score=105.48  Aligned_cols=103  Identities=16%  Similarity=0.130  Sum_probs=80.1

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCCCCCCc
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPYIVDTF  209 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~~~~~f  209 (309)
                      ...|++||||+||+|.+|+.++. .|+.+|+++|.++.+++.+++|++.++..   .++.+...|.....  ......+|
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~s-rGa~~v~~ve~~~~a~~~~~~N~~~~~~~---~~~~i~~~D~~~~l~~~~~~~~~f  114 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEP---EKFEVRKMDANRALEQFYEEKLQF  114 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hcCCCEEEEcccccccccceeee-cchhHHHHHHHHHHHHHHHHHHhhhhhcc---cccccccccchhhhhhhcccCCCc
Confidence            46799999999999999999666 47889999999999999999999988763   35555554432110  01124579


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHH--HHhcCC
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKF--LLKKVG  239 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~--lLk~~G  239 (309)
                      |+|++ |+.|.......++..+..  +|+++|
T Consensus       115 DlIfl-DPPY~~~~~~~~l~~i~~~~~L~~~g  145 (182)
T d2fhpa1         115 DLVLL-DPPYAKQEIVSQLEKMLERQLLTNEA  145 (182)
T ss_dssp             EEEEE-CCCGGGCCHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEe-chhhhhhHHHHHHHHHHHCCCCCCCE
Confidence            99998 888988888888888764  688888

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=9.5e-12  Score=108.60  Aligned_cols=142  Identities=12%  Similarity=0.137  Sum_probs=96.0

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      --|-++.|.+++..........+|+|+|||+|..++.+++ .+..+|+++|+|+++++.+++|++.++..   .++.+..
T Consensus        91 PRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~---~~~~i~~  166 (271)
T d1nv8a_          91 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVS---DRFFVRK  166 (271)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCT---TSEEEEE
T ss_pred             chhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCC---ceeEEee
Confidence            4566677777776544333456899999999999999876 57789999999999999999999999884   4566666


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCccc---------------------HHHHHHHHHHHHhcCCCeEEEEEeecCCch
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKEF---------------------HKDLARIIKFLLKKVGPSEALFFSPKRGDS  253 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~~---------------------~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~  253 (309)
                      .+|.... ....++||+|+++.+. -+..                     ..-+-+-+.++|+++|   .+++-... ..
T Consensus       167 ~~~~~~~-~~~~~~fDlIVsNPPY-I~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G---~l~~Eig~-~Q  240 (271)
T d1nv8a_         167 GEFLEPF-KEKFASIEMILSNPPY-VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGK---IVLMEIGE-DQ  240 (271)
T ss_dssp             SSTTGGG-GGGTTTCCEEEECCCC-BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTC---EEEEECCT-TC
T ss_pred             ccccccc-ccccCcccEEEEcccc-cCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCC---EEEEEECH-HH
Confidence            7665432 2234689999997553 2211                     1222234567888888   44444333 22


Q ss_pred             HHHHHHHHHhCCC
Q 021691          254 LDKFLEEIEGNHL  266 (309)
Q Consensus       254 ~~~f~~~~~~~G~  266 (309)
                      .+.+.+.+.+.||
T Consensus       241 ~~~v~~l~~~~g~  253 (271)
T d1nv8a_         241 VEELKKIVSDTVF  253 (271)
T ss_dssp             HHHHTTTSTTCEE
T ss_pred             HHHHHHHHHhCCE
Confidence            3445555555554

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.25  E-value=7.1e-12  Score=104.34  Aligned_cols=73  Identities=21%  Similarity=0.243  Sum_probs=56.0

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCcc
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      ..+.|++|||+|||+|.+++.+++ .++.+|+++|+++.+++.+++|+..         +.+..-|..     ...++||
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~-~ga~~V~~vDid~~a~~~ar~N~~~---------~~~~~~D~~-----~l~~~fD  109 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYL-LGAESVTAFDIDPDAIETAKRNCGG---------VNFMVADVS-----EISGKYD  109 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHH-TTBSEEEEEESCHHHHHHHHHHCTT---------SEEEECCGG-----GCCCCEE
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHH-cCCCcccccccCHHHHHHHHHcccc---------ccEEEEehh-----hcCCcce
Confidence            456899999999999999988655 5778999999999999999988542         233333332     3457899


Q ss_pred             EEEEcCCC
Q 021691          211 VIVASDCT  218 (309)
Q Consensus       211 vIi~~d~l  218 (309)
                      +|+++.++
T Consensus       110 ~Vi~NPPf  117 (197)
T d1ne2a_         110 TWIMNPPF  117 (197)
T ss_dssp             EEEECCCC
T ss_pred             EEEeCccc
Confidence            99996553

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1e-11  Score=105.75  Aligned_cols=101  Identities=17%  Similarity=0.137  Sum_probs=75.0

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCC-CCCceEEEEeeCCCCCCCCCCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAF-GGTTVKSMTLHWNQDDFPYIVDT  208 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~-~~~~v~~~~l~w~~~~~~~~~~~  208 (309)
                      .+.+|.+|||+|||+|..+..+|+..+ ..+|+++|.++++++.+++|++..+... ...++.+...|...  ......+
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~--~~~~~~~  150 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM--GYAEEAP  150 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG--CCGGGCC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc--ccchhhh
Confidence            567899999999999999988888765 5699999999999999999998766431 12344554433221  1223468


Q ss_pred             ccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          209 FDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       209 fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ||+|++...+.+..      ..+.+.|||||
T Consensus       151 fD~I~~~~~~~~ip------~~l~~~LkpGG  175 (224)
T d1i1na_         151 YDAIHVGAAAPVVP------QALIDQLKPGG  175 (224)
T ss_dssp             EEEEEECSBBSSCC------HHHHHTEEEEE
T ss_pred             hhhhhhhcchhhcC------HHHHhhcCCCc
Confidence            99999987766532      35678899999

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=6e-11  Score=107.65  Aligned_cols=154  Identities=19%  Similarity=0.141  Sum_probs=110.6

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      ..+..|.+.+.+.....++.+||||.||+|.+|+.+|+.  +++|+++|.++.+++.+++|++.|++.    ++.+...+
T Consensus       195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~----n~~~~~~~  268 (358)
T d1uwva2         195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQ----NVTFYHEN  268 (358)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCC----SEEEEECC
T ss_pred             hhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccc----cceeeecc
Confidence            446677777777666677889999999999999999886  679999999999999999999999984    55555544


Q ss_pred             CCCCCC--CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEecc
Q 021691          197 WNQDDF--PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENY  274 (309)
Q Consensus       197 w~~~~~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~  274 (309)
                      -.....  ......||+||. |+.-.. . ...+..+.+   .+.+ .+++.+ .++.|+.+-+..+.+.||.++.+..+
T Consensus       269 ~~~~~~~~~~~~~~~d~vil-DPPR~G-~-~~~~~~l~~---~~~~-~ivYVS-Cnp~TlaRDl~~l~~~gy~l~~i~~~  340 (358)
T d1uwva2         269 LEEDVTKQPWAKNGFDKVLL-DPARAG-A-AGVMQQIIK---LEPI-RIVYVS-CNPATLARDSEALLKAGYTIARLAML  340 (358)
T ss_dssp             TTSCCSSSGGGTTCCSEEEE-CCCTTC-C-HHHHHHHHH---HCCS-EEEEEE-SCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             hhhhhhhhhhhhccCceEEe-CCCCcc-H-HHHHHHHHH---cCCC-EEEEEe-CCHHHHHHHHHHHHHCCCeEeEEEEE
Confidence            332221  122467999988 555433 2 234444444   3332 344444 35778887788888899999999988


Q ss_pred             Cchhhhhhhc
Q 021691          275 NAEIWKRHQM  284 (309)
Q Consensus       275 ~~~~~~~~~~  284 (309)
                      |.-++..|-+
T Consensus       341 D~FP~T~HvE  350 (358)
T d1uwva2         341 DMFPHTGHLE  350 (358)
T ss_dssp             CCSTTSSCCE
T ss_pred             ecCCCCccEE
Confidence            8877665544

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.9e-11  Score=112.34  Aligned_cols=115  Identities=13%  Similarity=0.088  Sum_probs=81.6

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCC-----CCCCceEEEEeeCCCC
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGA-----FGGTTVKSMTLHWNQD  200 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~-----~~~~~v~~~~l~w~~~  200 (309)
                      +.....+.+|.+|||||||+|.+.+.+|+..++++|+|+|+++.+++.++++++..+..     .....+.   +.....
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~---~~~~~~  284 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE---FSLKKS  284 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE---EEESSC
T ss_pred             HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce---eeeeec
Confidence            44455778999999999999999999999888889999999999999999988764321     0011111   111111


Q ss_pred             CCC-----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          201 DFP-----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       201 ~~~-----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ...     ..-..+|+|+++. ..+..++...+..+.+.|||||  .++..
T Consensus       285 f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGG--rIVs~  332 (406)
T d1u2za_         285 FVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGC--KIISL  332 (406)
T ss_dssp             STTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTC--EEEES
T ss_pred             hhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCc--EEEEe
Confidence            110     0123578898854 4566778889999999999999  55543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.16  E-value=6.3e-11  Score=97.58  Aligned_cols=101  Identities=15%  Similarity=0.209  Sum_probs=77.6

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe---eCCCCCCCCCCCCc
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL---HWNQDDFPYIVDTF  209 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l---~w~~~~~~~~~~~f  209 (309)
                      ..|.+||||.||||.+|+.++. .|+.+|+++|.+..+++.+++|++..+...  ....+...   +|...  .....+|
T Consensus        42 ~~~~~vLDlFaGsG~~glEalS-RGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~--~~~~~~~~d~~~~l~~--~~~~~~f  116 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALS-RQAKKVTFLELDKTVANQLKKNLQTLKCSS--EQAEVINQSSLDFLKQ--PQNQPHF  116 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHHHHTTCCT--TTEEEECSCHHHHTTS--CCSSCCE
T ss_pred             cccceEeecccCccceeeeeee-ecceeeEEeecccchhhhHhhHHhhhcccc--cccccccccccccccc--cccCCcc
Confidence            4788999999999999999665 588899999999999999999999876532  22333222   22211  1224579


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHH--HHhcCC
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKF--LLKKVG  239 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~--lLk~~G  239 (309)
                      |+|++ |+.|.......++..+..  +|+++|
T Consensus       117 DlIFl-DPPY~~~~~~~~l~~l~~~~~L~~~~  147 (183)
T d2ifta1         117 DVVFL-DPPFHFNLAEQAISLLCENNWLKPNA  147 (183)
T ss_dssp             EEEEE-CCCSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEe-chhHhhhhHHHHHHHHHHhCCcCCCc
Confidence            99999 999998888888888875  688888

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.16  E-value=6.2e-11  Score=100.61  Aligned_cols=103  Identities=20%  Similarity=0.200  Sum_probs=75.4

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+...+++..++.+|.+|||+|||+|..+..+|+.  +.+|+++|.++++++.++++....      .++.+...|....
T Consensus        57 ~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~------~nv~~~~~d~~~g  128 (224)
T d1vbfa_          57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYY------NNIKLILGDGTLG  128 (224)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTC------SSEEEEESCGGGC
T ss_pred             hhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcc------cccccccCchhhc
Confidence            33334566667889999999999999999988887  569999999999999999876532      3456655543221


Q ss_pred             CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          201 DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .  ....+||.|++..++.+..      ..+.+.|++||
T Consensus       129 ~--~~~~pfD~Iiv~~a~~~ip------~~l~~qLk~GG  159 (224)
T d1vbfa_         129 Y--EEEKPYDRVVVWATAPTLL------CKPYEQLKEGG  159 (224)
T ss_dssp             C--GGGCCEEEEEESSBBSSCC------HHHHHTEEEEE
T ss_pred             c--hhhhhHHHHHhhcchhhhh------HHHHHhcCCCC
Confidence            1  1246799999977654432      35667899999

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.3e-11  Score=108.27  Aligned_cols=122  Identities=14%  Similarity=0.066  Sum_probs=86.3

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC-----CCCCCceEEEEee
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG-----AFGGTTVKSMTLH  196 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~-----~~~~~~v~~~~l~  196 (309)
                      +...+.....+.++.+|||||||+|.+.+.+|+..++.+++|+|+++.+++.++.++.....     .....++.+...|
T Consensus       139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            33444555677789999999999999999999988888999999999999999887665321     0113457776665


Q ss_pred             CCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          197 WNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       197 w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ..+..........|+|+++... +..+....+..+.+.|||||  .++..
T Consensus       219 ~~~~~~~~~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpGg--~iv~~  265 (328)
T d1nw3a_         219 FLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGG--RIVSS  265 (328)
T ss_dssp             TTSHHHHHHHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTTC--EEEES
T ss_pred             ccccccccccCcceEEEEccee-cchHHHHHHHHHHHhCCCCc--EEEEe
Confidence            5432111101124788886544 55677888899999999999  55443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.13  E-value=8.4e-11  Score=99.15  Aligned_cols=106  Identities=18%  Similarity=0.227  Sum_probs=80.9

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+...+++..++.+|.+|||+|||+|..+..+|+.++ .+|+++|.++++++.+++|+...+.    .++.+...|....
T Consensus        65 ~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~----~nv~~~~gd~~~g  139 (215)
T d1jg1a_          65 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGV----KNVHVILGDGSKG  139 (215)
T ss_dssp             HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTC----CSEEEEESCGGGC
T ss_pred             hhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCC----ceeEEEECccccC
Confidence            3333455556788999999999999999999888765 5799999999999999999999886    4677766654322


Q ss_pred             CCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          201 DFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .  ....+||.|+....+....  .    .+...|++||
T Consensus       140 ~--~~~~pfD~Iiv~~a~~~ip--~----~l~~qL~~gG  170 (215)
T d1jg1a_         140 F--PPKAPYDVIIVTAGAPKIP--E----PLIEQLKIGG  170 (215)
T ss_dssp             C--GGGCCEEEEEECSBBSSCC--H----HHHHTEEEEE
T ss_pred             C--cccCcceeEEeecccccCC--H----HHHHhcCCCC
Confidence            2  2357899999977765433  2    3556789999

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=2.2e-10  Score=97.13  Aligned_cols=101  Identities=11%  Similarity=0.101  Sum_probs=73.2

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcC------CcEEEEEcCCHHHHHHHHHHHHhccCC-CCCCceEEEEeeCCCCCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTE------ALEVVISDGNPQVVDYIQRNVDANSGA-FGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~------~~~V~~tD~~~~~l~~~~~n~~~n~~~-~~~~~v~~~~l~w~~~~~~  203 (309)
                      ++.+|.+|||+|||+|..+..+|+.++      ..+|+++|.++++++.+++|+..++.. .+..++.+...|.....  
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~--  154 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY--  154 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC--
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc--
Confidence            677899999999999999988887653      248999999999999999998664321 01135666555433221  


Q ss_pred             CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      ....+||.|++...+....      ..+.+.|++||
T Consensus       155 ~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG  184 (223)
T d1r18a_         155 PPNAPYNAIHVGAAAPDTP------TELINQLASGG  184 (223)
T ss_dssp             GGGCSEEEEEECSCBSSCC------HHHHHTEEEEE
T ss_pred             ccccceeeEEEEeechhch------HHHHHhcCCCc
Confidence            2346899999977665433      34678899999

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=4.4e-10  Score=94.70  Aligned_cols=132  Identities=19%  Similarity=0.173  Sum_probs=88.1

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ..|...+..    .+.++|||+|||+|..++.+|+.++ +++|+++|.++++++.++.+++..++.   .+|+....+..
T Consensus        46 ~lL~~lv~~----~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~---~~i~l~~Gd~~  118 (214)
T d2cl5a1          46 QIMDAVIRE----YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ---DKVTILNGASQ  118 (214)
T ss_dssp             HHHHHHHHH----HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG---GGEEEEESCHH
T ss_pred             HHHHHHHHh----hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC---ccceeeecccc
Confidence            445444443    3568999999999999999988764 579999999999999999999998873   45766655433


Q ss_pred             CCCC----CCCCCCccEEEEcCCCCCcccHHH--HHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhC
Q 021691          199 QDDF----PYIVDTFDVIVASDCTFFKEFHKD--LARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGN  264 (309)
Q Consensus       199 ~~~~----~~~~~~fDvIi~~d~ly~~~~~~~--ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~  264 (309)
                      +...    .....+||+|+. |.  +......  .+....++|+|||   +++++..--.....+.+.+++.
T Consensus       119 e~l~~l~~~~~~~~~D~ifi-D~--~~~~~~~~~~l~~~~~lLkpGG---vIv~Ddvl~~g~~~~~~~vr~~  184 (214)
T d2cl5a1         119 DLIPQLKKKYDVDTLDMVFL-DH--WKDRYLPDTLLLEKCGLLRKGT---VLLADNVIVPGTPDFLAYVRGS  184 (214)
T ss_dssp             HHGGGHHHHSCCCCEEEEEE-CS--CGGGHHHHHHHHHHTTCEEEEE---EEEESCCCCCCCHHHHHHHHHC
T ss_pred             ccccchhhcccccccceeee-cc--cccccccHHHHHHHhCccCCCc---EEEEeCcCCCCChHHHHHHhcc
Confidence            2110    112467999998 53  2333332  3455567899998   6666543211224466666654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.5e-10  Score=94.93  Aligned_cols=116  Identities=20%  Similarity=0.100  Sum_probs=86.4

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      ++++.......+.++|||+|||+|.-++.+|...+ .++|+.+|.+++..+.++++++..+..   .+++....+..+..
T Consensus        48 g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~---~~i~~~~Gda~e~l  124 (219)
T d2avda1          48 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE---HKIDLRLKPALETL  124 (219)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT---TTEEEEESCHHHHH
T ss_pred             HHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc---ceEEEEEeehhhcc
Confidence            33443333445679999999999999999998765 579999999999999999999998884   45665544322110


Q ss_pred             ----CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          202 ----FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       202 ----~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                          .....++||+|+. |  .+.......++.+.++|++||   +++++
T Consensus       125 ~~~~~~~~~~~fD~ifi-D--~dk~~y~~~~~~~~~lL~~GG---vii~D  168 (219)
T d2avda1         125 DELLAAGEAGTFDVAVV-D--ADKENCSAYYERCLQLLRPGG---ILAVL  168 (219)
T ss_dssp             HHHHHTTCTTCEEEEEE-C--SCSTTHHHHHHHHHHHEEEEE---EEEEE
T ss_pred             hhhhhhcccCCccEEEE-e--CCHHHHHHHHHHHHHHhcCCc---EEEEe
Confidence                1123468999999 4  345677888899999999999   55555

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.90  E-value=1.9e-08  Score=86.08  Aligned_cols=121  Identities=10%  Similarity=0.036  Sum_probs=90.0

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ..++|||+|||+|..++.+++.+|..++++.|. |++++.       ...   ..++++...|.-+.   .  ...|+++
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~~---~~ri~~~~gd~~~~---~--p~~D~~~  144 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN-------APP---LSGIEHVGGDMFAS---V--PQGDAMI  144 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCC---CTTEEEEECCTTTC---C--CCEEEEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc-------cCC---CCCeEEecCCcccc---c--ccceEEE
Confidence            457999999999999999999999999999995 555432       222   35677777765321   2  3569999


Q ss_pred             EcCCCCCccc--HHHHHHHHHHHHhcCCCeEEEEEeec---------------------------CCchHHHHHHHHHhC
Q 021691          214 ASDCTFFKEF--HKDLARIIKFLLKKVGPSEALFFSPK---------------------------RGDSLDKFLEEIEGN  264 (309)
Q Consensus       214 ~~d~ly~~~~--~~~ll~~l~~lLk~~G~~~~ii~~~~---------------------------r~~~~~~f~~~~~~~  264 (309)
                      +..++|+..+  -..+++.+++.|+|+|  .+++....                           +..+.++|.+.++++
T Consensus       145 l~~vLh~~~de~~~~iL~~~~~aL~pgg--~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~A  222 (244)
T d1fp1d2         145 LKAVCHNWSDEKCIEFLSNCHKALSPNG--KVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLS  222 (244)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHEEEEE--EEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred             EehhhhhCCHHHHHHHHHHHHHHcCCCc--EEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHc
Confidence            9999998654  5578999999999999  66665521                           112456788899999


Q ss_pred             CCeEEEEe
Q 021691          265 HLHFSIIE  272 (309)
Q Consensus       265 G~~~~~~~  272 (309)
                      ||+...+.
T Consensus       223 GF~~v~v~  230 (244)
T d1fp1d2         223 GFSKFQVA  230 (244)
T ss_dssp             TCSEEEEE
T ss_pred             CCCceEEE
Confidence            99865543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.86  E-value=1.2e-09  Score=92.62  Aligned_cols=107  Identities=14%  Similarity=0.044  Sum_probs=83.2

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-----CCC
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-----PYI  205 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-----~~~  205 (309)
                      ..+.++|||+|+|+|.-++.+|..++ .++|+.+|.+++..+.++++++..+..   .++++...+..+...     ...
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~---~~i~~~~g~a~~~L~~l~~~~~~  133 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD---HKIDFREGPALPVLDEMIKDEKN  133 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG---GGEEEEESCHHHHHHHHHHCGGG
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc---cceeeeehHHHHHHHHHHhcccc
Confidence            34678999999999999999998776 579999999999999999999998884   466665554321110     012


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .++||+|+. |.  +.......++.+.++|++||   +++++
T Consensus       134 ~~~fD~iFi-Da--~k~~y~~~~e~~~~ll~~gG---iii~D  169 (227)
T d1susa1         134 HGSYDFIFV-DA--DKDNYLNYHKRLIDLVKVGG---VIGYD  169 (227)
T ss_dssp             TTCBSEEEE-CS--CSTTHHHHHHHHHHHBCTTC---CEEEE
T ss_pred             CCceeEEEe-cc--chhhhHHHHHHHHhhcCCCc---EEEEc
Confidence            468999999 64  45668889999999999999   55555

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.83  E-value=2.1e-08  Score=85.89  Aligned_cols=122  Identities=14%  Similarity=0.185  Sum_probs=91.0

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      .++|+|+|||+|..++.+++.+|..++++.|. |++++.+       +.   ..++++...|.-++     ...+|+++.
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~---~~rv~~~~gD~f~~-----~p~aD~~~l  144 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------SG---SNNLTYVGGDMFTS-----IPNADAVLL  144 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CC---BTTEEEEECCTTTC-----CCCCSEEEE
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------cc---cCceEEEecCcccC-----CCCCcEEEE
Confidence            36899999999999999999999999999995 6555432       12   35678777765432     235899999


Q ss_pred             cCCCCCcccH--HHHHHHHHHHHhcCCC-eEEEEEee--------------------------cCCchHHHHHHHHHhCC
Q 021691          215 SDCTFFKEFH--KDLARIIKFLLKKVGP-SEALFFSP--------------------------KRGDSLDKFLEEIEGNH  265 (309)
Q Consensus       215 ~d~ly~~~~~--~~ll~~l~~lLk~~G~-~~~ii~~~--------------------------~r~~~~~~f~~~~~~~G  265 (309)
                      ..++|+..+-  ..+++.+++.|+|+|. ..+++...                          .+..+.+++.+.++++|
T Consensus       145 ~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AG  224 (244)
T d1fp2a2         145 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAG  224 (244)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTT
T ss_pred             EeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcC
Confidence            9999986554  5789999999999854 35555541                          12335678889999999


Q ss_pred             CeEEEEe
Q 021691          266 LHFSIIE  272 (309)
Q Consensus       266 ~~~~~~~  272 (309)
                      |+...+.
T Consensus       225 f~~~~i~  231 (244)
T d1fp2a2         225 FQHYKIS  231 (244)
T ss_dssp             CCEEEEE
T ss_pred             CceEEEE
Confidence            9876654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.77  E-value=2.8e-08  Score=84.46  Aligned_cols=132  Identities=15%  Similarity=0.166  Sum_probs=93.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~~~~fDvI  212 (309)
                      .+++|+|+|+|.|++|+.+|-..|..+|+.+|.+..=+..++.-+..-++.    ++.+..-+.+... .....++||+|
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~----n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE----NTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS----SEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC----CcEEEeehhhhccccccccccceEE
Confidence            567999999999999999999889999999999998888888877777763    3444433222111 11234689999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecC-CchHHHHHHHHHhCCCeEEEEeccC
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKR-GDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r-~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                      ++-.    ......++.....+++++|  .++++-... .+..+...+.+...|+.+..+..+.
T Consensus       146 ~sRA----va~l~~ll~~~~~~l~~~g--~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~  203 (239)
T d1xdza_         146 TARA----VARLSVLSELCLPLVKKNG--LFVALKAASAEEELNAGKKAITTLGGELENIHSFK  203 (239)
T ss_dssp             EEEC----CSCHHHHHHHHGGGEEEEE--EEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             EEhh----hhCHHHHHHHHhhhcccCC--EEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEe
Confidence            9952    3467889999999999999  555444332 2233455566778888887666544

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=3.8e-08  Score=81.97  Aligned_cols=102  Identities=14%  Similarity=0.224  Sum_probs=79.8

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      +++++|+|+|||.|++|+.+|...|..+|+++|.+..=+..++.-+..-++    .++.+..-+..+.   ....+||+|
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L----~nv~v~~~R~E~~---~~~~~fD~V  136 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL----ENIEPVQSRVEEF---PSEPPFDGV  136 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC----SSEEEEECCTTTS---CCCSCEEEE
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC----cceeeeccchhhh---cccccccee
Confidence            356799999999999999999988889999999999999999888887776    3566665544322   224579999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ++-.+    ...+.+++....+++++|  .+++.-
T Consensus       137 ~sRA~----~~~~~ll~~~~~~l~~~g--~~~~~K  165 (207)
T d1jsxa_         137 ISRAF----ASLNDMVSWCHHLPGEQG--RFYALK  165 (207)
T ss_dssp             ECSCS----SSHHHHHHHHTTSEEEEE--EEEEEE
T ss_pred             hhhhh----cCHHHHHHHHHHhcCCCc--EEEEEC
Confidence            98432    457889999999999999  444444

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=4.2e-09  Score=87.01  Aligned_cols=115  Identities=15%  Similarity=0.123  Sum_probs=81.2

Q ss_pred             HhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC---C
Q 021691          126 SLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD---F  202 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~---~  202 (309)
                      +.......+|..+||++||+|..+..+++..+..+|+++|.+++|++.+++++...+.     ++.....+..+..   .
T Consensus        15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~-----r~~~~~~~f~~~~~~~~   89 (192)
T d1m6ya2          15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD-----RVSLFKVSYREADFLLK   89 (192)
T ss_dssp             HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTT-----TEEEEECCGGGHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccc-----cccchhHHHhhHHHHHH
Confidence            3333355688999999999999999999988888999999999999999998876542     4555554433211   1


Q ss_pred             CCCCCCccEEEEcCCC---------CCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          203 PYIVDTFDVIVASDCT---------FFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~l---------y~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ....++||.|+.---+         -........+....++|+++|  .+++.+
T Consensus        90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG--~l~ii~  141 (192)
T d1m6ya2          90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGG--RIVVIS  141 (192)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEE--EEEEEE
T ss_pred             HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCC--eeeeec
Confidence            1224689999873222         123345677888889999999  454444

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.63  E-value=1.9e-07  Score=79.61  Aligned_cols=120  Identities=12%  Similarity=0.044  Sum_probs=85.3

Q ss_pred             CCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          135 SKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       135 g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      .++|||+|||+|..++.+++.+|..++++.|.. .+++.+       ..   ..++.....|+-++   .  ...|+++.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-------~~---~~r~~~~~~d~~~~---~--P~ad~~~l  145 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLP-HVIEDA-------PS---YPGVEHVGGDMFVS---I--PKADAVFM  145 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECT-TTTTTC-------CC---CTTEEEEECCTTTC---C--CCCSCEEC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccH-Hhhhhc-------cc---CCceEEeccccccc---C--CCcceEEE
Confidence            478999999999999999999999999999964 333211       11   24677777665432   2  23577888


Q ss_pred             cCCCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEee----------------------------cCCchHHHHHHHHHhC
Q 021691          215 SDCTFFK--EFHKDLARIIKFLLKKVGPSEALFFSP----------------------------KRGDSLDKFLEEIEGN  264 (309)
Q Consensus       215 ~d~ly~~--~~~~~ll~~l~~lLk~~G~~~~ii~~~----------------------------~r~~~~~~f~~~~~~~  264 (309)
                      ..++|+.  +....+++.+++.|+|+|+  +++...                            .+..+.++|.+.++++
T Consensus       146 ~~vlh~~~d~~~~~iL~~~~~al~pgg~--~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~A  223 (243)
T d1kyza2         146 KWICHDWSDEHCLKFLKNCYEALPDNGK--VIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGA  223 (243)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHCCSSSC--EEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHH
T ss_pred             EEEeecCCHHHHHHHHHHHHHhcCCCce--EEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHc
Confidence            8888875  4567789999999999994  444431                            1123466788888888


Q ss_pred             CCeEEEEe
Q 021691          265 HLHFSIIE  272 (309)
Q Consensus       265 G~~~~~~~  272 (309)
                      ||+...+.
T Consensus       224 Gf~~vkv~  231 (243)
T d1kyza2         224 GFQGFKVH  231 (243)
T ss_dssp             CCSCEEEE
T ss_pred             CCCcEEEE
Confidence            98765543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.62  E-value=1.6e-07  Score=83.53  Aligned_cols=135  Identities=12%  Similarity=0.062  Sum_probs=88.9

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      .|++.+........+.+|||.|||+|.+.+.++...     ...+++|+|+++.++..++.|+..++..     ......
T Consensus       104 ~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-----~~~~~~  178 (328)
T d2f8la1         104 IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-----MTLLHQ  178 (328)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-----CEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-----hhhhcc
Confidence            355555443344467799999999998888766543     2347999999999999999999887663     233333


Q ss_pred             eCCCCCCCCCCCCccEEEEcCCCCCcc------------------cHHHHHHHHHHHHhcCCCeEEEEEeec---CCchH
Q 021691          196 HWNQDDFPYIVDTFDVIVASDCTFFKE------------------FHKDLARIIKFLLKKVGPSEALFFSPK---RGDSL  254 (309)
Q Consensus       196 ~w~~~~~~~~~~~fDvIi~~d~ly~~~------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~  254 (309)
                      ++.   ......+||+|+++.++....                  ....++....++|+++|  .+.+..|.   +....
T Consensus       179 d~~---~~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G--~~~~I~p~~~l~~~~~  253 (328)
T d2f8la1         179 DGL---ANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGG--YLFFLVPDAMFGTSDF  253 (328)
T ss_dssp             CTT---SCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEE--EEEEEEEGGGGGSTTH
T ss_pred             ccc---cccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCC--ceEEEecCccccCchh
Confidence            322   223356899999977652211                  13346888899999999  44444443   24445


Q ss_pred             HHHHHHHHhCC
Q 021691          255 DKFLEEIEGNH  265 (309)
Q Consensus       255 ~~f~~~~~~~G  265 (309)
                      ..+.+.+.+.+
T Consensus       254 ~~lR~~L~~~~  264 (328)
T d2f8la1         254 AKVDKFIKKNG  264 (328)
T ss_dssp             HHHHHHHHHHE
T ss_pred             HHHHHHHHhCC
Confidence            66777666654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=1.5e-07  Score=85.12  Aligned_cols=108  Identities=20%  Similarity=0.064  Sum_probs=77.0

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC-----------CCceEEEEeeCCCCC
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG-----------GTTVKSMTLHWNQDD  201 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~-----------~~~v~~~~l~w~~~~  201 (309)
                      +++++|||..||+|..|+..|+..++.+|++.|+|+.+++.+++|++.|+....           ...+.+...|+... 
T Consensus        44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~-  122 (375)
T d2dula1          44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL-  122 (375)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH-
T ss_pred             hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh-
Confidence            367899999999999999888877888999999999999999999999987421           11122222222110 


Q ss_pred             CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          202 FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .......||+|.. |++ .  ....+++...+.++.+|  .+.+.+
T Consensus       123 ~~~~~~~fDvIDi-DPf-G--s~~pfldsAi~a~~~~G--ll~vTa  162 (375)
T d2dula1         123 MAERHRYFHFIDL-DPF-G--SPMEFLDTALRSAKRRG--ILGVTA  162 (375)
T ss_dssp             HHHSTTCEEEEEE-CCS-S--CCHHHHHHHHHHEEEEE--EEEEEE
T ss_pred             hHhhcCcCCcccC-CCC-C--CcHHHHHHHHHHhccCC--EEEEEe
Confidence            0112457999988 773 3  33568888888898888  444444

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.42  E-value=6e-07  Score=77.77  Aligned_cols=133  Identities=16%  Similarity=0.137  Sum_probs=90.9

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ..++||-||.|.|.....+.+..+..+|+++|+++++++.+++....+.......++++..-|.-... .....+||+|+
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l-~~~~~~yDvIi  153 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI-AKSENQYDVIM  153 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH-HTCCSCEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHH-hhcCCCCCEEE
Confidence            45899999999999998888776778999999999999999998876654444566666554432111 12346899999


Q ss_pred             EcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeEEE
Q 021691          214 ASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       214 ~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      . |+.....     .-..+.+.+++.|+++|  .++.-...   .+.......+.+++..-.+..
T Consensus       154 ~-D~~~p~~~~~~L~t~eFy~~~~~~L~~~G--v~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~  215 (274)
T d1iy9a_         154 V-DSTEPVGPAVNLFTKGFYAGIAKALKEDG--IFVAQTDNPWFTPELITNVQRDVKEIFPITKL  215 (274)
T ss_dssp             E-SCSSCCSCCCCCSTTHHHHHHHHHEEEEE--EEEEECCCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred             E-cCCCCCCcchhhccHHHHHHHHhhcCCCc--eEEEecCCccccHHHHHHHHHhhhhhcCceEE
Confidence            8 5432111     13567899999999999  33332221   233445667777777655544

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.42  E-value=3.3e-07  Score=80.08  Aligned_cols=130  Identities=13%  Similarity=0.075  Sum_probs=86.2

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ..++||=||.|.|.....+.+..+..+|+++|+++++++.+++....+.......++++..-|.-.......+++||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            45799999999999998888876668999999999999999997765443333456665544322111112245899999


Q ss_pred             EcCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEeecC---CchHHHHHHHHHhCCC
Q 021691          214 ASDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFSPKR---GDSLDKFLEEIEGNHL  266 (309)
Q Consensus       214 ~~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~~~r---~~~~~~f~~~~~~~G~  266 (309)
                      . |+.-...     .-..+++.+++.|+++|  .++.-....   ...+....+.+++.+.
T Consensus       160 ~-D~~dp~~~~~~L~t~eF~~~~~~~L~~~G--i~v~q~~s~~~~~~~~~~i~~~l~~vF~  217 (290)
T d1xj5a_         160 V-DSSDPIGPAKELFEKPFFQSVARALRPGG--VVCTQAESLWLHMDIIEDIVSNCREIFK  217 (290)
T ss_dssp             E-CCCCTTSGGGGGGSHHHHHHHHHHEEEEE--EEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred             E-cCCCCCCcchhhCCHHHHHHHHHhcCCCc--EEEEecCCcHHHHHHHHHHHhhhhhhcc
Confidence            8 5543211     12568899999999999  444433322   2334445566666653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=2.7e-07  Score=80.71  Aligned_cols=131  Identities=15%  Similarity=0.107  Sum_probs=85.8

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ..++||-||.|.|.....+++..+..+|+++|+++++++.+++.+..+.......++++..-|.-... .....+||+|+
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l-~~~~~~yDvIi  167 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYV-RKFKNEFDVII  167 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHG-GGCSSCEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHH-hcCCCCCCEEE
Confidence            45899999999999888887776678999999999999999998776543333456666655432211 12346899999


Q ss_pred             EcCCCCCcc------cHHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeE
Q 021691          214 ASDCTFFKE------FHKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       214 ~~d~ly~~~------~~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~  268 (309)
                      + |+.-...      .-..+++.+++.|+++|  .++.-...   .........+.+++..-.+
T Consensus       168 ~-D~~dp~~~~~~~L~t~efy~~~~~~L~~~G--i~v~q~~sp~~~~~~~~~i~~tl~~vF~~v  228 (295)
T d1inla_         168 I-DSTDPTAGQGGHLFTEEFYQACYDALKEDG--VFSAETEDPFYDIGWFKLAYRRISKVFPIT  228 (295)
T ss_dssp             E-EC----------CCSHHHHHHHHHHEEEEE--EEEEECCCTTTTHHHHHHHHHHHHHHCSEE
T ss_pred             E-cCCCCCcCchhhhccHHHHHHHHhhcCCCc--EEEEecCChhhhhHHHHHHHHHHHhhccee
Confidence            7 4432111      13568899999999999  33332222   1223445555566654333

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.39  E-value=1.8e-07  Score=82.67  Aligned_cols=133  Identities=15%  Similarity=0.145  Sum_probs=85.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHh-ccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDA-NSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~-n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      ..++||.||.|.|.....+++..+..+|+++|+++++++.+++.+.. ++......++++..-|+-... .....+||+|
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l-~~~~~~yDvI  155 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYL-ERTEERYDVV  155 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHH-HHCCCCEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHh-hhcCCcccEE
Confidence            46899999999999888877766678999999999999999988754 222223456666655443211 1224689999


Q ss_pred             EE--cCCCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEe--ec-C-CchHHHHHHHHHhCCCeEE
Q 021691          213 VA--SDCTFFKE-----FHKDLARIIKFLLKKVGPSEALFFS--PK-R-GDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       213 i~--~d~ly~~~-----~~~~ll~~l~~lLk~~G~~~~ii~~--~~-r-~~~~~~f~~~~~~~G~~~~  269 (309)
                      +.  .|+.....     .-..+++.+++.|+++|  .++.-.  +. . ........+.+++..-.+.
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G--vlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~  221 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGG--VMGMQTGMILLTHHRVHPVVHRTVREAFRYVR  221 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEE--EEEEEEEEECC---CHHHHHHHHHHTTCSEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCc--eEEEecCCcccchHHHHHHHHHHHHHhCceEE
Confidence            96  22222211     12568899999999999  333322  21 1 2333445566666654444

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.36  E-value=6e-07  Score=73.73  Aligned_cols=115  Identities=20%  Similarity=0.215  Sum_probs=69.2

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCCh----hhHHHHHhcC----CcEEEEEcCCHHHHHHHHHHHHhcc-CC-------
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGL----AGLVIAATTE----ALEVVISDGNPQVVDYIQRNVDANS-GA-------  184 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~----~~l~la~~~~----~~~V~~tD~~~~~l~~~~~n~~~n~-~~-------  184 (309)
                      .|.+.+...   .+..+|++.|||+|-    +++.+....+    .-+|+|+|+++.+++.++..+-... ..       
T Consensus        14 ~L~~~~~~~---~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~   90 (193)
T d1af7a2          14 ILAEHARRR---HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQL   90 (193)
T ss_dssp             HHHHHHHHS---CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHH
T ss_pred             HHHHHHhcc---CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHH
Confidence            344554433   234599999999995    3333333221    1379999999999999984331100 00       


Q ss_pred             -------CC------------CCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCC--cccHHHHHHHHHHHHhcCC
Q 021691          185 -------FG------------GTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFF--KEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       185 -------~~------------~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~lLk~~G  239 (309)
                             ..            ...+.....+-... .....++||+|+|.+++..  .+....+++.+.+.|+|||
T Consensus        91 ~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG  165 (193)
T d1af7a2          91 QRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK-QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDG  165 (193)
T ss_dssp             HHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS-SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEE
T ss_pred             hhceeecCCCccceeehHHHHHHHHHHhhhhcccc-ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCc
Confidence                   00            00122222222111 1223478999999997643  4556889999999999999

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.9e-07  Score=79.42  Aligned_cols=127  Identities=14%  Similarity=0.088  Sum_probs=83.1

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ..++||=||.|.|.....+.+..+..+|+++|+++++++.+++....+.......++++..-|.-... .....+||+|+
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l-~~~~~~yDvIi  156 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFM-KQNQDAFDVII  156 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH-HTCSSCEEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHH-hcCCCCCCEEE
Confidence            45899999999999998888776778999999999999999998766543333456666555432111 12246899999


Q ss_pred             EcCCCCCcccH-----HHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhC
Q 021691          214 ASDCTFFKEFH-----KDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGN  264 (309)
Q Consensus       214 ~~d~ly~~~~~-----~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~  264 (309)
                      + |+.......     ..+++.+++.|+++|  .++.-+..   ....+....+.+++.
T Consensus       157 ~-D~~~p~~~~~~L~t~eF~~~~~~~L~~~G--i~v~q~~s~~~~~~~~~~~~~tl~~~  212 (285)
T d2o07a1         157 T-DSSDPMGPAESLFKESYYQLMKTALKEDG--VLCCQGECQWLHLDLIKEMRQFCQSL  212 (285)
T ss_dssp             E-ECC-----------CHHHHHHHHHEEEEE--EEEEEEECTTTCHHHHHHHHHHHHHH
T ss_pred             E-cCCCCCCcccccccHHHHHHHHHhcCCCC--eEEEeccchhhhHHHHHHHHHHHHhc
Confidence            8 653322211     245788999999999  44333322   223334455556655

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.33  E-value=1.3e-06  Score=73.94  Aligned_cols=91  Identities=11%  Similarity=0.065  Sum_probs=63.5

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      .+.+.+.......++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.++++...+      .++.+...|.-..
T Consensus         8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~------~n~~i~~~D~l~~   79 (235)
T d1qama_           8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH------DNFQVLNKDILQF   79 (235)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC------CSEEEECCCGGGC
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcc------cchhhhhhhhhhc
Confidence            44566677777788999999999999999999987  579999999999999998865332      3455555443322


Q ss_pred             CCCCCCCCccEEEEcCCCCCcc
Q 021691          201 DFPYIVDTFDVIVASDCTFFKE  222 (309)
Q Consensus       201 ~~~~~~~~fDvIi~~d~ly~~~  222 (309)
                      +.  .......|++ ...|+..
T Consensus        80 ~~--~~~~~~~vv~-NLPYnIs   98 (235)
T d1qama_          80 KF--PKNQSYKIFG-NIPYNIS   98 (235)
T ss_dssp             CC--CSSCCCEEEE-ECCGGGH
T ss_pred             cc--cccccceeee-eehhhhh
Confidence            22  1223344555 5666654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.27  E-value=5e-07  Score=79.44  Aligned_cols=131  Identities=15%  Similarity=0.060  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ..++||-||.|.|.+...+.+..+..+|+++|+++++++.+++....+.......++++..-|.-... .....+||+|+
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l-~~~~~~yDvII  184 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFL-KNHKNEFDVII  184 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHH-HHCTTCEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHH-HhCCCCCCEEE
Confidence            45799999999999998888766668999999999999999987765543333455655443321110 11346899999


Q ss_pred             EcCCCCCccc-----HHHHHHHHHHHHhcCCCeEEEEEeec---CCchHHHHHHHHHhCCCeE
Q 021691          214 ASDCTFFKEF-----HKDLARIIKFLLKKVGPSEALFFSPK---RGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       214 ~~d~ly~~~~-----~~~ll~~l~~lLk~~G~~~~ii~~~~---r~~~~~~f~~~~~~~G~~~  268 (309)
                      . |+.-....     -..+++.+++.|+++|  .++.-+..   .........+.+++..-.+
T Consensus       185 ~-D~~dp~~~~~~L~t~eFy~~~~~~L~~~G--i~v~q~~s~~~~~~~~~~i~~~l~~vF~~v  244 (312)
T d2b2ca1         185 T-DSSDPVGPAESLFGQSYYELLRDALKEDG--ILSSQGESVWLHLPLIAHLVAFNRKIFPAV  244 (312)
T ss_dssp             E-CCC-------------HHHHHHHHEEEEE--EEEEECCCTTTCHHHHHHHHHHHHHHCSEE
T ss_pred             E-cCCCCCCcchhhhhHHHHHHHHhhcCCCc--EEEEecCChHHhHHHHHHHHHHhhhccceE
Confidence            8 54332211     2446789999999999  33333222   1233445555666653333

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.7e-06  Score=73.56  Aligned_cols=90  Identities=19%  Similarity=0.254  Sum_probs=66.7

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +++.+.......++..|||+|+|+|.++..+++.  +.+|++++.++.+++.+++.+..+..   ..++.+...|+-..+
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~---~~~~~~i~~D~l~~~   83 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPV---ASKLQVLVGDVLKTD   83 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTT---GGGEEEEESCTTTSC
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhcc---ccchhhhHHHHhhhh
Confidence            4445555556677899999999999999999987  56999999999999999988766543   245677776665443


Q ss_pred             CCCCCCCccEEEEcCCCCCc
Q 021691          202 FPYIVDTFDVIVASDCTFFK  221 (309)
Q Consensus       202 ~~~~~~~fDvIi~~d~ly~~  221 (309)
                      .    ..++.|+++-+ |+.
T Consensus        84 ~----~~~~~vV~NLP-Y~I   98 (278)
T d1zq9a1          84 L----PFFDTCVANLP-YQI   98 (278)
T ss_dssp             C----CCCSEEEEECC-GGG
T ss_pred             h----hhhhhhhcchH-HHH
Confidence            2    24567888655 443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.22  E-value=1.1e-06  Score=76.08  Aligned_cols=130  Identities=18%  Similarity=0.088  Sum_probs=81.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccC------CCCCCceEEEEeeCCCCCCCCCCC
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSG------AFGGTTVKSMTLHWNQDDFPYIVD  207 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~------~~~~~~v~~~~l~w~~~~~~~~~~  207 (309)
                      +.++||-||+|.|.....+++ .+..+|+++|+++++++.+++-...+..      .....++++..-|.-... . ...
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l-~-~~~  148 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI-K-NNR  148 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-H-HCC
T ss_pred             CCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-h-ccC
Confidence            468999999999988887766 4667999999999999999976543321      012345555544321110 0 136


Q ss_pred             CccEEEEcCCCCCcccH-----HHHHHHHHHHHhcCCCeEEEEEee--c-CCchHHHHHHHHHhCCCeEE
Q 021691          208 TFDVIVASDCTFFKEFH-----KDLARIIKFLLKKVGPSEALFFSP--K-RGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       208 ~fDvIi~~d~ly~~~~~-----~~ll~~l~~lLk~~G~~~~ii~~~--~-r~~~~~~f~~~~~~~G~~~~  269 (309)
                      +||+|+. |+.......     ..+++.+++.|+++|  .++.-+.  . .+..+....+.+++..-.+.
T Consensus       149 ~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~~~G--v~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~  215 (276)
T d1mjfa_         149 GFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPG--IYVTQAGSVYLFTDELISAYKEMKKVFDRVY  215 (276)
T ss_dssp             CEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEE--EEEEEEEETTTSHHHHHHHHHHHHHHCSEEE
T ss_pred             CCCEEEE-eCCCCCCCcccccCHHHHHhhHhhcCCCc--eEEEecCCcchhHHHHHHHHHHHHhhCCeeE
Confidence            7999998 654432222     467899999999999  3333221  1 23344455566666543443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.21  E-value=4.6e-07  Score=75.35  Aligned_cols=126  Identities=17%  Similarity=0.120  Sum_probs=76.4

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      .+++++.......+|.+|||.|||+|.+...+.+.. ....++++|+++.++..++.             ......++..
T Consensus         6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~-------------~~~~~~~~~~   72 (223)
T d2ih2a1           6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW-------------AEGILADFLL   72 (223)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT-------------EEEEESCGGG
T ss_pred             HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc-------------ceeeeeehhc
Confidence            456677766666688999999999998776665543 34679999999865433221             1122222211


Q ss_pred             CCCCCCCCCccEEEEcCCCCCcc-----------------------------cHHHHHHHHHHHHhcCCCeEEEEEeecC
Q 021691          200 DDFPYIVDTFDVIVASDCTFFKE-----------------------------FHKDLARIIKFLLKKVGPSEALFFSPKR  250 (309)
Q Consensus       200 ~~~~~~~~~fDvIi~~d~ly~~~-----------------------------~~~~ll~~l~~lLk~~G~~~~ii~~~~r  250 (309)
                         ......||+|+++.+.-...                             ....++....++|+++|  .+.+..+..
T Consensus        73 ---~~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G--~~~~I~p~~  147 (223)
T d2ih2a1          73 ---WEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGG--VLVFVVPAT  147 (223)
T ss_dssp             ---CCCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEE--EEEEEEEGG
T ss_pred             ---cccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCC--ceEEEEeee
Confidence               12346899999976542110                             12345677788999999  454444432


Q ss_pred             ---CchHHHHHHHHHhC
Q 021691          251 ---GDSLDKFLEEIEGN  264 (309)
Q Consensus       251 ---~~~~~~f~~~~~~~  264 (309)
                         ....+.+.+.+.+.
T Consensus       148 ~l~~~~~~~lR~~l~~~  164 (223)
T d2ih2a1         148 WLVLEDFALLREFLARE  164 (223)
T ss_dssp             GGTCGGGHHHHHHHHHH
T ss_pred             eccCcchHHHHHHHHhc
Confidence               23334555555544

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.17  E-value=5.1e-07  Score=76.92  Aligned_cols=87  Identities=14%  Similarity=0.127  Sum_probs=59.1

Q ss_pred             HHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY  204 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~  204 (309)
                      .+.+..+..++.+|||+|||+|.++..+++.  +.+|+++|.++.+++.++.+...      ..++.+...|....+  .
T Consensus        20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~------~~n~~ii~~D~l~~~--~   89 (245)
T d1yuba_          20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQFQ--F   89 (245)
T ss_dssp             HHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTTTT--C
T ss_pred             HHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh------ccchhhhhhhhhccc--c
Confidence            4445456667889999999999999999987  67999999999988877654321      134555444443322  2


Q ss_pred             CCCCccEEEEcCCCCCcc
Q 021691          205 IVDTFDVIVASDCTFFKE  222 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~  222 (309)
                      ....++.|+++-+ |+..
T Consensus        90 ~~~~~~~vv~NLP-Y~Is  106 (245)
T d1yuba_          90 PNKQRYKIVGNIP-YHLS  106 (245)
T ss_dssp             CCSSEEEEEEECC-SSSC
T ss_pred             ccceeeeEeeeee-hhhh
Confidence            3345666777544 5543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=3.1e-05  Score=66.98  Aligned_cols=124  Identities=13%  Similarity=0.044  Sum_probs=81.6

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ..+|.+|||+.||.|.=+..+|......+|++.|.++.-+..++.++...+..    .+.+...+.. .........||.
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~----~~~~~~~~~~-~~~~~~~~~fd~  174 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK----ATVKQGDGRY-PSQWCGEQQFDR  174 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC----CEEEECCTTC-THHHHTTCCEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc----ceeeeccccc-cchhcccccccE
Confidence            45789999999999988888888766679999999999999999999998873    2222222111 111123467999


Q ss_pred             EEEcCCCCC----------------cc-------cHHHHHHHHHHHHhcCCCeEEEEEeecC--CchHHHHHHHHHh
Q 021691          212 IVASDCTFF----------------KE-------FHKDLARIIKFLLKKVGPSEALFFSPKR--GDSLDKFLEEIEG  263 (309)
Q Consensus       212 Ii~~d~ly~----------------~~-------~~~~ll~~l~~lLk~~G~~~~ii~~~~r--~~~~~~f~~~~~~  263 (309)
                      |+. |+.-.                ..       .-..++....++|++||  .++++++.-  .+..+.....+++
T Consensus       175 IL~-DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG--~lvYsTCS~~~~ENE~vv~~~l~~  248 (284)
T d1sqga2         175 ILL-DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGG--TLVYATCSVLPEENSLQIKAFLQR  248 (284)
T ss_dssp             EEE-ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEE--EEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             EEE-eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCc--eEEEeeecCchhhCHHHHHHHHHh
Confidence            998 43211                11       13446777778899999  666666432  3333333444444

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.93  E-value=3.1e-05  Score=70.84  Aligned_cols=149  Identities=13%  Similarity=0.041  Sum_probs=95.3

Q ss_pred             CCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-------------cEEEEEcCCHHHHHHHH
Q 021691          109 NTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-------------LEVVISDGNPQVVDYIQ  175 (309)
Q Consensus       109 ~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-------------~~V~~tD~~~~~l~~~~  175 (309)
                      ..|-. .=|  ..+++++........+.+|+|-.||+|.+-+.+.+....             ..+.+.|.++.+...++
T Consensus       140 ~~G~f-~TP--~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~  216 (425)
T d2okca1         140 GAGQY-FTP--RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLAS  216 (425)
T ss_dssp             CCGGG-CCC--HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred             cchhh-ccc--hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHH
Confidence            34654 334  446667666555567889999999999888776654321             25999999999999999


Q ss_pred             HHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCc-----------------ccHHHHHHHHHHHHhcC
Q 021691          176 RNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFK-----------------EFHKDLARIIKFLLKKV  238 (309)
Q Consensus       176 ~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~-----------------~~~~~ll~~l~~lLk~~  238 (309)
                      .|+..++......++  ..-+   ........+||+|+++.++-..                 ...-.++..+..+|+++
T Consensus       217 ~n~~l~g~~~~~~~i--~~~d---~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~  291 (425)
T d2okca1         217 MNLYLHGIGTDRSPI--VCED---SLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG  291 (425)
T ss_dssp             HHHHHTTCCSSCCSE--EECC---TTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             hhhhhcCCcccccee--ecCc---hhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC
Confidence            999988764322222  2222   1222335689999997765221                 11245788889999999


Q ss_pred             CCeEEEEEee--cCCchHHHHHHHHHhCC
Q 021691          239 GPSEALFFSP--KRGDSLDKFLEEIEGNH  265 (309)
Q Consensus       239 G~~~~ii~~~--~r~~~~~~f~~~~~~~G  265 (309)
                      |+..+|+-..  .+......+.+.+-+.+
T Consensus       292 G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~  320 (425)
T d2okca1         292 GRAAVVLPDNVLFEAGAGETIRKRLLQDF  320 (425)
T ss_dssp             EEEEEEEEHHHHHCSTHHHHHHHHHHHHE
T ss_pred             CeEEEEechHHhhhhhhHHHHHHHHHHhc
Confidence            9544443321  13444456666665543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.89  E-value=0.00017  Score=63.00  Aligned_cols=149  Identities=13%  Similarity=0.037  Sum_probs=93.8

Q ss_pred             CCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC-CcEEEEEcCCHHHHHHHHHHHHhccCCCCCC
Q 021691          110 TGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE-ALEVVISDGNPQVVDYIQRNVDANSGAFGGT  188 (309)
Q Consensus       110 tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~-~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~  188 (309)
                      .|...+=+.+-.++-+++   ...+|.+|||+.||.|.=+..++...+ .+.+++.|.++.-+..++.|+...+..    
T Consensus        95 ~G~~~vQD~aS~l~~~~l---~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~----  167 (313)
T d1ixka_          95 TGLIYIQEASSMYPPVAL---DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL----  167 (313)
T ss_dssp             TTSEEECCHHHHHHHHHH---CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC----
T ss_pred             hceEEEecccccchhhcc---cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh----
Confidence            355444455545544444   345789999999999987777776654 468999999999999999999988773    


Q ss_pred             ceEEEEeeCCCCCCCCCCCCccEEEE-cCCCCC--------------c-------ccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          189 TVKSMTLHWNQDDFPYIVDTFDVIVA-SDCTFF--------------K-------EFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       189 ~v~~~~l~w~~~~~~~~~~~fDvIi~-~d~ly~--------------~-------~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      ++....-  +..........||.|+. +.|.-.              .       .....++....+++++||  .++++
T Consensus       168 ~i~~~~~--d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG--~lVYs  243 (313)
T d1ixka_         168 NVILFHS--SSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG--ILVYS  243 (313)
T ss_dssp             SEEEESS--CGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEE--EEEEE
T ss_pred             ccccccc--cccccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCc--EEEEe
Confidence            3332211  11112233568999988 222211              1       113447778888899999  66666


Q ss_pred             eec--CCchHHHHHHHHHhCCCeEE
Q 021691          247 SPK--RGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       247 ~~~--r~~~~~~f~~~~~~~G~~~~  269 (309)
                      ++.  ..+..+.....+++.++...
T Consensus       244 TCSl~~eENE~VV~~~L~~~~~~~~  268 (313)
T d1ixka_         244 TCSLEPEENEFVIQWALDNFDVELL  268 (313)
T ss_dssp             ESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred             eccCChHhHHHHHHHHHhcCCCEEe
Confidence            643  23333444445566666554

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3.8e-05  Score=61.90  Aligned_cols=129  Identities=14%  Similarity=0.096  Sum_probs=80.7

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCC-cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEe
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEA-LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTL  195 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~-~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l  195 (309)
                      .|+..|.+......-+.++.+||||||+.|..+..+++..+. .+|+++|..+.           ..+    ..+.....
T Consensus         5 RaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i----~~~~~~~~   69 (180)
T d1ej0a_           5 RAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI----VGVDFLQG   69 (180)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC----TTEEEEES
T ss_pred             HHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc----CCceEeec
Confidence            356667765555444567899999999999999988876544 68999997551           111    23444444


Q ss_pred             eCCCCCC------CCCCCCccEEEEcCCCCCc------------ccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHH
Q 021691          196 HWNQDDF------PYIVDTFDVIVASDCTFFK------------EFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKF  257 (309)
Q Consensus       196 ~w~~~~~------~~~~~~fDvIi~~d~ly~~------------~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f  257 (309)
                      +......      .....+||+|++ |...+.            ......+....++|++||.   +++-..+......+
T Consensus        70 d~~~~~~~~~~~~~~~~~~~DlVlS-D~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~---fV~K~F~g~~~~~l  145 (180)
T d1ej0a_          70 DFRDELVMKALLERVGDSKVQVVMS-DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS---FVVKVFQGEGFDEY  145 (180)
T ss_dssp             CTTSHHHHHHHHHHHTTCCEEEEEE-CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE---EEEEEESSTTHHHH
T ss_pred             ccccchhhhhhhhhccCcceeEEEe-cccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCc---EEEEEecCccHHHH
Confidence            4332211      012467999999 433331            1234456677789999993   33333344556778


Q ss_pred             HHHHHhC
Q 021691          258 LEEIEGN  264 (309)
Q Consensus       258 ~~~~~~~  264 (309)
                      ...++..
T Consensus       146 ~~~l~~~  152 (180)
T d1ej0a_         146 LREIRSL  152 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            8888765

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=1.5e-05  Score=67.91  Aligned_cols=54  Identities=9%  Similarity=0.140  Sum_probs=44.5

Q ss_pred             HHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHH
Q 021691          122 LAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRN  177 (309)
Q Consensus       122 La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n  177 (309)
                      +.+.+.......++..|||+|||+|.++..+++.  +.+|+++|+++.+++.++..
T Consensus         9 ~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~   62 (252)
T d1qyra_           9 VIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTH   62 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHH
Confidence            3344455455667899999999999999999886  57899999999999999864

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.66  E-value=0.00013  Score=61.20  Aligned_cols=144  Identities=13%  Similarity=0.064  Sum_probs=80.5

Q ss_pred             ecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          115 HWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       115 ~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      +=.++..|.+..... .+.++.+|+|||||.|..+..+|...+...|.+.|+--..-+     .......+...-+.   
T Consensus        48 ~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-----~P~~~~~~~~ni~~---  118 (257)
T d2p41a1          48 VSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-----EPIPMSTYGWNLVR---  118 (257)
T ss_dssp             SSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-----CCCCCCSTTGGGEE---
T ss_pred             cchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-----CCcccccccccccc---
Confidence            557788887655543 566777999999999999999887655567888886211000     00011111111111   


Q ss_pred             eeCCCCCCCCCCCCccEEEEcCCCCCcc-------cHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCe
Q 021691          195 LHWNQDDFPYIVDTFDVIVASDCTFFKE-------FHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       195 l~w~~~~~~~~~~~fDvIi~~d~ly~~~-------~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~  267 (309)
                      +.-...-........|+|+| |+--...       ..-.+++.+.+.|++||.+.+=+++++.++..+.+...-...|-.
T Consensus       119 ~~~~~dv~~l~~~~~D~vlc-Dm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg~  197 (257)
T d2p41a1         119 LQSGVDVFFIPPERCDTLLC-DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGA  197 (257)
T ss_dssp             EECSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCE
T ss_pred             chhhhhHHhcCCCcCCEEEe-eCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCCe
Confidence            11111112234578999999 5432211       122467777889999995544455665655544443333344433


Q ss_pred             E
Q 021691          268 F  268 (309)
Q Consensus       268 ~  268 (309)
                      .
T Consensus       198 l  198 (257)
T d2p41a1         198 L  198 (257)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.0004  Score=60.01  Aligned_cols=97  Identities=11%  Similarity=-0.005  Sum_probs=65.7

Q ss_pred             CceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhc-CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCc
Q 021691          111 GLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATT-EALEVVISDGNPQVVDYIQRNVDANSGAFGGTT  189 (309)
Q Consensus       111 G~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~-~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~  189 (309)
                      |+..+=+.+-.++-+++   ...+|.+|||+.||.|.=+..+|... +..+|++.|.++.-++.+++|++..+..    +
T Consensus        74 G~~~~QD~sS~l~~~~L---~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~----~  146 (293)
T d2b9ea1          74 GHLILQDRASCLPAMLL---DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS----C  146 (293)
T ss_dssp             TSEEECCTGGGHHHHHH---CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----S
T ss_pred             cEEEEcCCccccccccc---CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc----c
Confidence            44434333333333333   33578999999999998877777654 4578999999999999999999998873    4


Q ss_pred             eEEEEeeCCCCCCCC-CCCCccEEEE
Q 021691          190 VKSMTLHWNQDDFPY-IVDTFDVIVA  214 (309)
Q Consensus       190 v~~~~l~w~~~~~~~-~~~~fDvIi~  214 (309)
                      +.+...|........ ..++||.|+.
T Consensus       147 ~~~~~~d~~~~~~~~~~~~~fD~VL~  172 (293)
T d2b9ea1         147 CELAEEDFLAVSPSDPRYHEVHYILL  172 (293)
T ss_dssp             EEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             eeeeehhhhhhcccccccceeeEEee
Confidence            555544433221111 1357999998

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=5.6e-05  Score=70.94  Aligned_cols=144  Identities=6%  Similarity=-0.151  Sum_probs=87.1

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC------------------CcEEEEEcCCHHHHHHHHHHHHhc
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE------------------ALEVVISDGNPQVVDYIQRNVDAN  181 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~------------------~~~V~~tD~~~~~l~~~~~n~~~n  181 (309)
                      ..+++++........+.+|+|-.||+|.+.+.+.+...                  ...+++.|.++.+...++.|+...
T Consensus       150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~  229 (524)
T d2ar0a1         150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  229 (524)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence            44556666655556788999999999988776555321                  125899999999999999999887


Q ss_pred             cCCCCCCceEEEEeeCCCCCC--CCCCCCccEEEEcCCCCCc--------------ccHHHHHHHHHHHHhcCCCeEEEE
Q 021691          182 SGAFGGTTVKSMTLHWNQDDF--PYIVDTFDVIVASDCTFFK--------------EFHKDLARIIKFLLKKVGPSEALF  245 (309)
Q Consensus       182 ~~~~~~~~v~~~~l~w~~~~~--~~~~~~fDvIi~~d~ly~~--------------~~~~~ll~~l~~lLk~~G~~~~ii  245 (309)
                      +.....  .....+.++....  .....+||+|+++.++-..              ...-.++..+.+.|+++|+..+|+
T Consensus       230 ~~~~~i--~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl  307 (524)
T d2ar0a1         230 DIEGNL--DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  307 (524)
T ss_dssp             TCCCBG--GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccc--cccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence            653110  0000011111110  0123579999997765321              112347888899999999544443


Q ss_pred             Eee--cCCchHHHHHHHHHhCC
Q 021691          246 FSP--KRGDSLDKFLEEIEGNH  265 (309)
Q Consensus       246 ~~~--~r~~~~~~f~~~~~~~G  265 (309)
                      -..  .+......+.+.+-+.+
T Consensus       308 P~~~Lf~~~~~~~iR~~Ll~~~  329 (524)
T d2ar0a1         308 PDNVLFEGGKGTDIRRDLMDKC  329 (524)
T ss_dssp             EHHHHHCCTHHHHHHHHHHHHE
T ss_pred             ehHHhhhhhhhHHHHHHHHHcC
Confidence            321  14444455666665543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.20  E-value=8.1e-05  Score=60.00  Aligned_cols=123  Identities=12%  Similarity=-0.012  Sum_probs=76.1

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC---CCCCC
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF---PYIVD  207 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~---~~~~~  207 (309)
                      ...+|..++|..+|.|..+..+.+.  ..+|+|+|.+++++..++...        ..++........+-..   ....+
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~--------~~~~~~~~~~f~~~~~~l~~~~~~   84 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH--------LPGLTVVQGNFRHLKRHLAALGVE   84 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC--------CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc--------ccceeEeehHHHHHHHHHHHcCCC
Confidence            4568899999999999988888775  459999999999999887531        1234444433322110   11235


Q ss_pred             CccEEEEcCCCCC----------cccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCe
Q 021691          208 TFDVIVASDCTFF----------KEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       208 ~fDvIi~~d~ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~  267 (309)
                      .+|.|+. |.=+.          .......+.....+|+++|  .+++.+.... ....+.+.+++.++.
T Consensus        85 ~vdgIl~-DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg--~~~ii~fhs~-Ed~ivk~~~~e~~~k  150 (182)
T d1wg8a2          85 RVDGILA-DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGG--RLVVIAFHSL-EDRVVKRFLRESGLK  150 (182)
T ss_dssp             CEEEEEE-ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEE--EEEEEECSHH-HHHHHHHHHHHHCSE
T ss_pred             ccCEEEE-EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCC--eEEEEecccc-hhHHHHHHHhhccce
Confidence            7999988 43111          1234446778888999999  4444443221 112344445555554

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.07  E-value=0.0003  Score=58.75  Aligned_cols=102  Identities=14%  Similarity=0.021  Sum_probs=59.4

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc----CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--CCC
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT----EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP--YIV  206 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~----~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~--~~~  206 (309)
                      .+.++|||+|++.|.-++.+|..+    ..++|+++|+++......     ..    ...++++...+-......  ...
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~----~~~~I~~i~gDs~~~~~~~~l~~  149 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----AS----DMENITLHQGDCSDLTTFEHLRE  149 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GG----GCTTEEEEECCSSCSGGGGGGSS
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hc----cccceeeeecccccHHHHHHHHh
Confidence            357899999999997766655432    457999999976432211     11    124566665554332211  123


Q ss_pred             CCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          207 DTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       207 ~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..+|+|+. |--|.....-.-+ .+..+|++||  .+++-+
T Consensus       150 ~~~dlIfI-D~~H~~~~v~~~~-~~~~lLk~GG--~iIveD  186 (232)
T d2bm8a1         150 MAHPLIFI-DNAHANTFNIMKW-AVDHLLEEGD--YFIIED  186 (232)
T ss_dssp             SCSSEEEE-ESSCSSHHHHHHH-HHHHTCCTTC--EEEECS
T ss_pred             cCCCEEEE-cCCcchHHHHHHH-HHhcccCcCC--EEEEEc
Confidence            46788877 4445433222222 3567999999  444444

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.05  E-value=0.00061  Score=57.32  Aligned_cols=96  Identities=15%  Similarity=0.172  Sum_probs=61.0

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCC-----CCceEEEEeeCCCCCCCCCCCCcc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFG-----GTTVKSMTLHWNQDDFPYIVDTFD  210 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~-----~~~v~~~~l~w~~~~~~~~~~~fD  210 (309)
                      .+|||+-||.|.-++.+|..  +.+|++++.+|.+...++.++........     ..++++...|-.+. ......+||
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~-L~~~~~~~D  166 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-LTDITPRPQ  166 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH-STTCSSCCS
T ss_pred             CEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH-HhccCCCCC
Confidence            48999999999999999886  56899999999998888887765432110     12344444321111 122346799


Q ss_pred             EEEEcCCCCCcccHHHHHHHHHHHH
Q 021691          211 VIVASDCTFFKEFHKDLARIIKFLL  235 (309)
Q Consensus       211 vIi~~d~ly~~~~~~~ll~~l~~lL  235 (309)
                      +|+. |+.|.......+.+.--++|
T Consensus       167 vIYl-DPMFp~~~Ksa~~kk~m~~l  190 (250)
T d2oyra1         167 VVYL-DPMFPHKQKSALVKKEMRVF  190 (250)
T ss_dssp             EEEE-CCCCCCCCC-----HHHHHH
T ss_pred             EEEE-CCCCccccccccchhHHHHH
Confidence            9998 99887554444443333333

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.75  E-value=0.0017  Score=50.84  Aligned_cols=101  Identities=18%  Similarity=0.177  Sum_probs=66.6

Q ss_pred             hhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--
Q 021691          127 LSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP--  203 (309)
Q Consensus       127 ~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~--  203 (309)
                      .......+|.+||=+|||. |+..+.+|+..++ +|+++|.+++-++.+++.    +..     ..   ..+......  
T Consensus        19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga~-----~~---~~~~~~~~~~~   85 (170)
T d1e3ja2          19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GAD-----VT---LVVDPAKEEES   85 (170)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCS-----EE---EECCTTTSCHH
T ss_pred             HHHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CCc-----EE---Eeccccccccc
Confidence            3444667899999999994 8888888988765 899999999988888752    221     00   111111110  


Q ss_pred             --------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          204 --------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       204 --------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                              .....+|+|+-+  .    ..+..+....++++++|  .++++..
T Consensus        86 ~~~~~~~~~~g~g~D~vid~--~----g~~~~~~~a~~~~~~~G--~iv~~G~  130 (170)
T d1e3ja2          86 SIIERIRSAIGDLPNVTIDC--S----GNEKCITIGINITRTGG--TLMLVGM  130 (170)
T ss_dssp             HHHHHHHHHSSSCCSEEEEC--S----CCHHHHHHHHHHSCTTC--EEEECSC
T ss_pred             hhhhhhhcccccCCceeeec--C----CChHHHHHHHHHHhcCC--ceEEEec
Confidence                    013468988763  1    22466777888999999  5665553

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.58  E-value=0.0069  Score=52.15  Aligned_cols=125  Identities=14%  Similarity=0.111  Sum_probs=76.5

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccE
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDV  211 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDv  211 (309)
                      ...+.+||||-||.|..++.+- ..|..-|.++|.++.+++..+.|......           .|..+.... ....+|+
T Consensus         8 ~~~~lrv~~lFsG~Gg~~~gl~-~aG~~~v~a~e~d~~a~~~~~~N~~~~~~-----------~Di~~~~~~-~~~~~Dl   74 (327)
T d2c7pa1           8 QLTGLRFIDLFAGLGGFRLALE-SCGAECVYSNEWDKYAQEVYEMNFGEKPE-----------GDITQVNEK-TIPDHDI   74 (327)
T ss_dssp             TTTTCEEEEETCTTTHHHHHHH-HTTCEEEEEECCCHHHHHHHHHHHSCCCB-----------SCGGGSCGG-GSCCCSE
T ss_pred             cCCCCeEEEECccccHHHHHHH-HCCCeEEEEEeCCHHHHHHHHHHCCCCCc-----------CchhcCchh-hcceeee
Confidence            3467899999999999988864 45655677899999999999988632110           111111111 1245899


Q ss_pred             EEEcCCCCCc----------ccHHHHHHHHHHHHhcCCCeEEEEEee------cCCchHHHHHHHHHhCCCeEE
Q 021691          212 IVASDCTFFK----------EFHKDLARIIKFLLKKVGPSEALFFSP------KRGDSLDKFLEEIEGNHLHFS  269 (309)
Q Consensus       212 Ii~~d~ly~~----------~~~~~ll~~l~~lLk~~G~~~~ii~~~------~r~~~~~~f~~~~~~~G~~~~  269 (309)
                      ++++.+.-.-          +....++..+.++++.-.+..+++-..      .....++.+.+.+++.|+.+.
T Consensus        75 l~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~  148 (327)
T d2c7pa1          75 LCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFH  148 (327)
T ss_dssp             EEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCE
T ss_pred             eecccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcce
Confidence            9997765331          122235555555554433323333222      123456788889999998765

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.0016  Score=56.88  Aligned_cols=45  Identities=9%  Similarity=0.240  Sum_probs=39.7

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHH
Q 021691          134 RSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNV  178 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~  178 (309)
                      .+.+|||+|.|.|.++..+.....+.+|+++|.++...+.++...
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~   87 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF   87 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc
Confidence            567899999999999999887656679999999999999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.49  E-value=0.002  Score=51.94  Aligned_cols=111  Identities=15%  Similarity=0.038  Sum_probs=72.0

Q ss_pred             HHHHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC
Q 021691          123 AFFSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD  201 (309)
Q Consensus       123 a~~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~  201 (309)
                      +.+......+.+|.+||-+|||. |+.+..+|+..++.+|+++|.+++-++.+++.    +..      .+  .+-...+
T Consensus        14 a~~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~------~~--~~~~~~~   81 (195)
T d1kola2          14 GYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE------IA--DLSLDTP   81 (195)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE------EE--ETTSSSC
T ss_pred             HHHHHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc------EE--EeCCCcC
Confidence            33444455778999999999996 88888889888999999999999988887753    221      11  1000010


Q ss_pred             CC------CCCCCccEEEEcCCC---------CCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          202 FP------YIVDTFDVIVASDCT---------FFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       202 ~~------~~~~~fDvIi~~d~l---------y~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..      .....+|+++-+--.         .........++...++++++|  .+++..
T Consensus        82 ~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG--~v~~~G  140 (195)
T d1kola2          82 LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAG--KIGIPG  140 (195)
T ss_dssp             HHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEE--EEEECS
T ss_pred             HHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCC--EEEEee
Confidence            00      013468998853211         011224568899999999999  555554

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.25  E-value=0.0007  Score=53.57  Aligned_cols=101  Identities=12%  Similarity=0.121  Sum_probs=68.4

Q ss_pred             hhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC---
Q 021691          127 LSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF---  202 (309)
Q Consensus       127 ~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~---  202 (309)
                      .......+|.+||=+|||. |..+..+|+..++..|+++|.+++-++.+++.    +..      .+  ++-..++.   
T Consensus        21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~------~~--i~~~~~~~~~~   88 (174)
T d1f8fa2          21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT------HV--INSKTQDPVAA   88 (174)
T ss_dssp             HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS------EE--EETTTSCHHHH
T ss_pred             HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe------EE--EeCCCcCHHHH
Confidence            3344677899999999985 88888889988888999999999888777653    321      11  11111111   


Q ss_pred             --CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          203 --PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       203 --~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                        ....+.||+|+-+      ...+..++...++++++|  .++++.
T Consensus        89 i~~~t~gg~D~vid~------~G~~~~~~~~~~~~~~~G--~i~~~G  127 (174)
T d1f8fa2          89 IKEITDGGVNFALES------TGSPEILKQGVDALGILG--KIAVVG  127 (174)
T ss_dssp             HHHHTTSCEEEEEEC------SCCHHHHHHHHHTEEEEE--EEEECC
T ss_pred             HHHHcCCCCcEEEEc------CCcHHHHHHHHhcccCce--EEEEEe
Confidence              0113479998863      123567788889999999  566554

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.24  E-value=0.036  Score=47.00  Aligned_cols=123  Identities=16%  Similarity=0.083  Sum_probs=73.8

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          136 KRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      .+||||-||.|.+++.+-. .|-.-|.++|+++.+.+..+.|...          .....|..+-.... ....|+++++
T Consensus         1 mk~~~lF~G~Gg~~~gl~~-aG~~~~~a~e~d~~a~~~~~~N~~~----------~~~~~Di~~~~~~~-~~~~dll~~g   68 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQK-AGFRIICANEYDKSIWKTYESNHSA----------KLIKGDISKISSDE-FPKCDGIIGG   68 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHH-HTCEEEEEEECCHHHHHHHHHHCCS----------EEEESCTTTSCGGG-SCCCSEEEEC
T ss_pred             CeEEEeCcCcCHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHHCCC----------CCccCChhhCCHhH-cccccEEeec
Confidence            4799999999999887644 3555677999999999888877421          11222333222111 2468999997


Q ss_pred             CCCCC----------cccHHHHHHHHHHHHhcCCCeEEEEEeec------CCchHHHHHHHHHhCCCeEEE
Q 021691          216 DCTFF----------KEFHKDLARIIKFLLKKVGPSEALFFSPK------RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       216 d~ly~----------~~~~~~ll~~l~~lLk~~G~~~~ii~~~~------r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      .+.-.          .+....++-.+.++++.-.+..+++-...      ....+..++..+.+.|+.+..
T Consensus        69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~  139 (324)
T d1dcta_          69 PPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHI  139 (324)
T ss_dssp             CCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEE
T ss_pred             ccccccccccccccccccccchHHHHHHHHHhhCCceeeccccccccccccchhhHHHHhHHhhCCCccce
Confidence            75533          12334566555555554333334433322      234556667777777877654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.20  E-value=0.0054  Score=48.44  Aligned_cols=105  Identities=22%  Similarity=0.227  Sum_probs=68.5

Q ss_pred             HHHHhh-CcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC
Q 021691          123 AFFSLS-HADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD  200 (309)
Q Consensus       123 a~~l~~-~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~  200 (309)
                      +..... .....+|.+||=+|||. |...+.+|+..|+.+|+++|.+++-++.+++.    |..      .+  ++-.+.
T Consensus        16 a~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~------~v--i~~~~~   83 (182)
T d1vj0a2          16 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD------LT--LNRRET   83 (182)
T ss_dssp             HHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS------EE--EETTTS
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce------EE--Eecccc
Confidence            434443 34567899999999984 88899999998878999999999988887652    221      11  111111


Q ss_pred             CCC---------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          201 DFP---------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       201 ~~~---------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      +..         .....+|+|+-  +.-.    +..++...++++++|  .++++.
T Consensus        84 ~~~~~~~~i~~~~~~~g~Dvvid--~vG~----~~~~~~a~~~l~~~G--~iv~~G  131 (182)
T d1vj0a2          84 SVEERRKAIMDITHGRGADFILE--ATGD----SRALLEGSELLRRGG--FYSVAG  131 (182)
T ss_dssp             CHHHHHHHHHHHTTTSCEEEEEE--CSSC----TTHHHHHHHHEEEEE--EEEECC
T ss_pred             chHHHHHHHHHhhCCCCceEEee--cCCc----hhHHHHHHHHhcCCC--EEEEEe
Confidence            100         11345899885  3332    345677788999999  555554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.02  E-value=0.0058  Score=48.13  Aligned_cols=103  Identities=16%  Similarity=0.118  Sum_probs=67.7

Q ss_pred             HHhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          125 FSLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       125 ~l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      ......+..+|.+||=+|||. |+.++.+|+..++.+|+++|.+++-++.+++.    |..      .+  ++..++...
T Consensus        18 ~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~------~~--i~~~~~~~~   85 (174)
T d1jqba2          18 HGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT------DI--LNYKNGHIE   85 (174)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS------EE--ECGGGSCHH
T ss_pred             HHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc------cc--ccccchhHH
Confidence            334445677899999999995 99999999998888999999999888777642    221      11  111111100


Q ss_pred             ------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          204 ------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       204 ------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                            .....||+|+-+  .-.    +..++...++++++|  .+++..
T Consensus        86 ~~v~~~t~g~G~D~vid~--~g~----~~~~~~a~~~~~~~G--~iv~~G  127 (174)
T d1jqba2          86 DQVMKLTNGKGVDRVIMA--GGG----SETLSQAVKMVKPGG--IISNIN  127 (174)
T ss_dssp             HHHHHHTTTSCEEEEEEC--SSC----TTHHHHHHHHEEEEE--EEEECC
T ss_pred             HHHHHHhhccCcceEEEc--cCC----HHHHHHHHHHHhcCC--EEEEEe
Confidence                  112459998763  222    345677778899998  555544

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.01  E-value=0.0073  Score=47.60  Aligned_cols=62  Identities=11%  Similarity=0.042  Sum_probs=49.0

Q ss_pred             cccHHHHHHHHh-hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHH
Q 021691          116 WPSEDVLAFFSL-SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRN  177 (309)
Q Consensus       116 W~sa~~La~~l~-~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n  177 (309)
                      -.++..-+.... ......+|.+|+=.|||. |+.++.+++..++.+|+++|.+++-++.+++.
T Consensus        10 l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          10 IGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             GGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            344455444443 445678899999999985 89999999999889999999999998888764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.87  E-value=0.0092  Score=46.93  Aligned_cols=112  Identities=12%  Similarity=0.033  Sum_probs=72.9

Q ss_pred             cccHHHHHHHHh-hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          116 WPSEDVLAFFSL-SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       116 W~sa~~La~~l~-~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      -.++..-+.... ....+.+|.+||=+|||. |+.++.+|+..++.+|+++|.+++-++.+++    .+..      .+ 
T Consensus         9 l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~------~~-   77 (174)
T d1e3ia2           9 IGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT------DC-   77 (174)
T ss_dssp             GGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS------EE-
T ss_pred             hhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC------cc-
Confidence            344444444443 445678899999999996 9999999999999999999999987777665    2321      11 


Q ss_pred             EeeCCCCCCC-------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcC-CCeEEEEEe
Q 021691          194 TLHWNQDDFP-------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKV-GPSEALFFS  247 (309)
Q Consensus       194 ~l~w~~~~~~-------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~-G~~~~ii~~  247 (309)
                       .+....+..       .....+|+|+-+      .-.+..+....+.++++ |  .+++..
T Consensus        78 -i~~~~~~~~~~~~~~~~~~~G~d~vie~------~G~~~~~~~a~~~~~~g~G--~~v~vG  130 (174)
T d1e3ia2          78 -LNPRELDKPVQDVITELTAGGVDYSLDC------AGTAQTLKAAVDCTVLGWG--SCTVVG  130 (174)
T ss_dssp             -ECGGGCSSCHHHHHHHHHTSCBSEEEES------SCCHHHHHHHHHTBCTTTC--EEEECC
T ss_pred             -cCCccchhhhhhhHhhhhcCCCcEEEEe------cccchHHHHHHHHhhcCCe--EEEecC
Confidence             111111100       013568998763      22356778888888886 7  555544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.005  Score=48.04  Aligned_cols=100  Identities=19%  Similarity=0.166  Sum_probs=63.0

Q ss_pred             CcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC--CCCC
Q 021691          129 HADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD--FPYI  205 (309)
Q Consensus       129 ~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~--~~~~  205 (309)
                      .....+|.+||-+|+| .|+..+.+|+..|+ +|+++|.+++-++.+++.    |..      .+  .+..++.  ....
T Consensus        22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~------~~--i~~~~~~~~~~~~   88 (168)
T d1piwa2          22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD------HY--IATLEEGDWGEKY   88 (168)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS------EE--EEGGGTSCHHHHS
T ss_pred             HhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc------EE--eeccchHHHHHhh
Confidence            3467789999999999 48888888888765 899999999888877653    321      11  1111111  1122


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .+.||+|+.....-...    .+....++++++|  .++++.
T Consensus        89 ~~~~d~vi~~~~~~~~~----~~~~~~~~l~~~G--~iv~~G  124 (168)
T d1piwa2          89 FDTFDLIVVCASSLTDI----DFNIMPKAMKVGG--RIVSIS  124 (168)
T ss_dssp             CSCEEEEEECCSCSTTC----CTTTGGGGEEEEE--EEEECC
T ss_pred             hcccceEEEEecCCccc----hHHHHHHHhhccc--eEEEec
Confidence            45799988643221111    1344567888988  555543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.01  Score=46.24  Aligned_cols=102  Identities=12%  Similarity=0.150  Sum_probs=68.9

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC---
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP---  203 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~---  203 (309)
                      ......+|.+||=+|||. |+....+|+..++.+|+++|.+++-++.+++.    +..      .+...  ......   
T Consensus        20 ~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~------~~~~~--~~~~~~~~~   87 (171)
T d1pl8a2          20 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD------LVLQI--SKESPQEIA   87 (171)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS------EEEEC--SSCCHHHHH
T ss_pred             HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc------ccccc--ccccccccc
Confidence            334567899999999995 88888889998888999999999888877642    331      11111  111100   


Q ss_pred             -----CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          204 -----YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       204 -----~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                           .....+|+|+-+-      ..+..++...++++++|  .++++...
T Consensus        88 ~~~~~~~g~g~Dvvid~~------G~~~~~~~a~~~~~~gG--~iv~~G~~  130 (171)
T d1pl8a2          88 RKVEGQLGCKPEVTIECT------GAEASIQAGIYATRSGG--TLVLVGLG  130 (171)
T ss_dssp             HHHHHHHTSCCSEEEECS------CCHHHHHHHHHHSCTTC--EEEECSCC
T ss_pred             ccccccCCCCceEEEecc------CCchhHHHHHHHhcCCC--EEEEEecC
Confidence                 0124689987731      22567888899999999  66665543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.43  E-value=0.015  Score=45.63  Aligned_cols=49  Identities=12%  Similarity=0.113  Sum_probs=42.9

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ......+|.+||=+|||. |+.++.+|+..++.+|+++|.+++-++.+++
T Consensus        21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            445788999999999985 8889999999999999999999988888875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.37  E-value=0.0022  Score=50.33  Aligned_cols=95  Identities=15%  Similarity=0.150  Sum_probs=63.0

Q ss_pred             CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEE
Q 021691          134 RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVI  212 (309)
Q Consensus       134 ~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvI  212 (309)
                      +..+|+=||+|. |+.++..|+.++ ++|++.|.+++.++.++.....+.        .....  ........-...|+|
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~~~~l~~l~~~~~~~~--------~~~~~--~~~~l~~~~~~aDiv   99 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETLFGSRV--------ELLYS--NSAEIETAVAEADLL   99 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGGGS--------EEEEC--CHHHHHHHHHTCSEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCcHHHHHHHHHhhcccc--------eeehh--hhhhHHHhhccCcEE
Confidence            567999999995 999999999886 599999999999998876544331        11111  000011112468999


Q ss_pred             EEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          213 VASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       213 i~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      |++-.+-....+.-+-+.+.+.+|||.
T Consensus       100 I~aalipG~~aP~lIt~~mv~~Mk~GS  126 (168)
T d1pjca1         100 IGAVLVPGRRAPILVPASLVEQMRTGS  126 (168)
T ss_dssp             EECCCCTTSSCCCCBCHHHHTTSCTTC
T ss_pred             EEeeecCCcccCeeecHHHHhhcCCCc
Confidence            997655444433334466777788877

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.33  E-value=0.016  Score=44.75  Aligned_cols=50  Identities=18%  Similarity=0.189  Sum_probs=40.6

Q ss_pred             HhhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          126 SLSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ...+....+|.+||=+|+|. |+..+.+|+..+ .+|+++|.+++-++.+++
T Consensus        19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhc
Confidence            33444667899999999985 999999999876 699999999988877764

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.30  E-value=0.018  Score=47.35  Aligned_cols=57  Identities=14%  Similarity=0.057  Sum_probs=44.8

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHH
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVD  179 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~  179 (309)
                      ..|.+++.... ..+|..|||--||+|..++++.+.  +.+.+++|++++.++.+++++.
T Consensus       199 ~~L~~~lI~~~-s~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHh-CCCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence            34555555432 257889999999999999885554  5799999999999999998875

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.72  E-value=0.031  Score=46.45  Aligned_cols=59  Identities=14%  Similarity=0.188  Sum_probs=47.5

Q ss_pred             HHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhc
Q 021691          120 DVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDAN  181 (309)
Q Consensus       120 ~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n  181 (309)
                      ..|.+++.... ..+|..|||--||+|..++++.+.  +.+.+++|++++..+.+++++...
T Consensus       194 ~~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         194 AAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            44566665542 347889999999999999986665  679999999999999999988753

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.099  Score=44.52  Aligned_cols=125  Identities=16%  Similarity=0.117  Sum_probs=71.7

Q ss_pred             CeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-CCCCCccEE
Q 021691          136 KRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-YIVDTFDVI  212 (309)
Q Consensus       136 ~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-~~~~~fDvI  212 (309)
                      .+|+||.||.|.+++.+-.. |-  .-|.++|+++.+++..+.|.....         +..-|..+.... .....+|++
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~~~~~---------~~~~di~~~~~~~~~~~~~Dll   72 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFPHTQ---------LLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTTSC---------EECSCGGGCCHHHHHHHCCSEE
T ss_pred             CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHCCCCC---------cccCchhhCCHhHcCCCCccEE
Confidence            58999999999988776443 32  236799999999998887742111         110111100000 011368999


Q ss_pred             EEcCCCCC----------cccHHHHHHHHHHHHhcCC-CeEEEEEeec----CCchHHHHHHHHHhCCCeEEE
Q 021691          213 VASDCTFF----------KEFHKDLARIIKFLLKKVG-PSEALFFSPK----RGDSLDKFLEEIEGNHLHFSI  270 (309)
Q Consensus       213 i~~d~ly~----------~~~~~~ll~~l~~lLk~~G-~~~~ii~~~~----r~~~~~~f~~~~~~~G~~~~~  270 (309)
                      ++..+.-.          .+....|+-.+.++++.-. +..++++..-    .....+.+.+.+++.|+.+..
T Consensus        73 ~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~  145 (343)
T d1g55a_          73 LMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQE  145 (343)
T ss_dssp             EECCC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             EeecccccccccccccccccccccccchhhhhHhhhcCCCceeeeeccCCcccchhhHHHHhhhhccccccce
Confidence            99776533          1223446666677765421 1134544422    234577888999999988754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.50  E-value=0.017  Score=49.01  Aligned_cols=59  Identities=17%  Similarity=0.122  Sum_probs=45.3

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhcc
Q 021691          121 VLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANS  182 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~  182 (309)
                      .|.+.+.... ..+|..|||--||+|..++++.+.  +.+.+++|++++.++.+++++..+.
T Consensus       238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHhcc
Confidence            4555554432 347889999999999999885554  6799999999999999988765543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.22  E-value=0.046  Score=42.24  Aligned_cols=104  Identities=13%  Similarity=-0.004  Sum_probs=67.5

Q ss_pred             HHHHHHHHh-hCcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEee
Q 021691          119 EDVLAFFSL-SHADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLH  196 (309)
Q Consensus       119 a~~La~~l~-~~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~  196 (309)
                      +..-++... ....+.+|.+||=.||| .|..++.+|+..++..|+++|.+++-++.+++.    +..      .+  .+
T Consensus        12 a~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~------~~--i~   79 (176)
T d2fzwa2          12 GISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT------EC--IN   79 (176)
T ss_dssp             HHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS------EE--EC
T ss_pred             HHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc------EE--Ee
Confidence            333344443 44577899999999998 478888889988889999999999888777653    321      11  11


Q ss_pred             CCCCCCC-------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCC
Q 021691          197 WNQDDFP-------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGP  240 (309)
Q Consensus       197 w~~~~~~-------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~  240 (309)
                      ..+....       .....+|+|+-+  +    -.+.+++....+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~g~D~vid~--~----G~~~~~~~~~~~~~~g~~  124 (176)
T d2fzwa2          80 PQDFSKPIQEVLIEMTDGGVDYSFEC--I----GNVKVMRAALEACHKGWG  124 (176)
T ss_dssp             GGGCSSCHHHHHHHHTTSCBSEEEEC--S----CCHHHHHHHHHTBCTTTC
T ss_pred             CCchhhHHHHHHHHHcCCCCcEeeec--C----CCHHHHHHHHHhhcCCce
Confidence            1111100       113468999873  1    224667788888888873

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.99  E-value=0.07  Score=40.76  Aligned_cols=100  Identities=14%  Similarity=0.097  Sum_probs=61.9

Q ss_pred             hhCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCC-
Q 021691          127 LSHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPY-  204 (309)
Q Consensus       127 ~~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~-  204 (309)
                      .......+|.+||=.|+|. |+..+.+|+..++ +|+++|.+++-++.+++    .+..    .    ..+..+.+... 
T Consensus        20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~----~Ga~----~----~~~~~~~~~~~~   86 (168)
T d1rjwa2          20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD----L----VVNPLKEDAAKF   86 (168)
T ss_dssp             HHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS----E----EECTTTSCHHHH
T ss_pred             HHHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh----cCcc----e----ecccccchhhhh
Confidence            3334567899999999985 8888888887655 89999999988777654    3331    0    11222111100 


Q ss_pred             ---CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          205 ---IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       205 ---~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                         ....+|.++- +..     -...+....++++++|  .++++.
T Consensus        87 ~~~~~~~~~~~v~-~~~-----~~~~~~~a~~~l~~~G--~i~~~g  124 (168)
T d1rjwa2          87 MKEKVGGVHAAVV-TAV-----SKPAFQSAYNSIRRGG--ACVLVG  124 (168)
T ss_dssp             HHHHHSSEEEEEE-SSC-----CHHHHHHHHHHEEEEE--EEEECC
T ss_pred             cccccCCCceEEe-ecC-----CHHHHHHHHHHhccCC--ceEecc
Confidence               0123444443 221     2566788889999999  555544

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.91  E-value=0.068  Score=41.26  Aligned_cols=59  Identities=19%  Similarity=0.193  Sum_probs=45.0

Q ss_pred             cHHHHHHHHh-hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHH
Q 021691          118 SEDVLAFFSL-SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQR  176 (309)
Q Consensus       118 sa~~La~~l~-~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~  176 (309)
                      ++..-+.... ....+.+|.+|+=+|+|. |+....+++..++.+|+++|.+++-++.+++
T Consensus        11 ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          11 CGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             cHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            3444444444 455788999999999986 6777777888888999999999987777664

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=93.86  E-value=0.1  Score=46.22  Aligned_cols=52  Identities=12%  Similarity=0.146  Sum_probs=43.5

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhcCC--cEEEEEcCCHHHHHHHHHHHHhccCC
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATTEA--LEVVISDGNPQVVDYIQRNVDANSGA  184 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~~~--~~V~~tD~~~~~l~~~~~n~~~n~~~  184 (309)
                      .++..++|+||-.|..+..+++..+.  .+|++.+.+|...+.+++|+..|...
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            35679999999999888876665443  58999999999999999999988653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.82  E-value=0.054  Score=41.89  Aligned_cols=98  Identities=12%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-----CC
Q 021691          131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-----PY  204 (309)
Q Consensus       131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-----~~  204 (309)
                      ...+|.+||=.|+|. |...+.+++..++..|+++|.+++-++.+++.    +..      .+  ++..++..     ..
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga~------~~--i~~~~~~~~~~~~~~   96 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD------HV--VDARRDPVKQVMELT   96 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS------EE--EETTSCHHHHHHHHT
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----ccc------ee--ecCcccHHHHHHHhh
Confidence            356789999999985 88888888888888999999999877777642    221      11  12211110     01


Q ss_pred             CCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          205 IVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       205 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ....+|+|+-+  .    .-...++...++++++|  .++++..
T Consensus        97 ~~~g~d~vid~--~----g~~~~~~~a~~~l~~~G--~iv~~G~  132 (172)
T d1h2ba2          97 RGRGVNVAMDF--V----GSQATVDYTPYLLGRMG--RLIIVGY  132 (172)
T ss_dssp             TTCCEEEEEES--S----CCHHHHHHGGGGEEEEE--EEEECCC
T ss_pred             CCCCceEEEEe--c----CcchHHHHHHHHHhCCC--EEEEEeC
Confidence            13458988763  1    22446777888999999  5665543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.45  E-value=0.083  Score=40.55  Aligned_cols=107  Identities=14%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             HHHHHHhhCcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          121 VLAFFSLSHADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       121 ~La~~l~~~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      ..+..........+|.+||=+|+ | .|...+.+++..+..+|+++|.+++-++.+++.    +..      .+  ++..
T Consensus        14 ~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~------~~--i~~~   81 (170)
T d1jvba2          14 ITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD------YV--INAS   81 (170)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS------EE--EETT
T ss_pred             HHHHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc------ee--eccC
Confidence            33445555567788999999996 4 477777778877888999999999887777653    321      11  1111


Q ss_pred             CCCC------CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          199 QDDF------PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       199 ~~~~------~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ..+.      ......||+|+-.-      .-+..++...++++++|  .++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~d~vid~~------g~~~~~~~a~~~l~~~G--~iv~~G  128 (170)
T d1jvba2          82 MQDPLAEIRRITESKGVDAVIDLN------NSEKTLSVYPKALAKQG--KYVMVG  128 (170)
T ss_dssp             TSCHHHHHHHHTTTSCEEEEEESC------CCHHHHTTGGGGEEEEE--EEEECC
T ss_pred             CcCHHHHHHHHhhcccchhhhccc------ccchHHHhhhhhcccCC--EEEEec
Confidence            1111      01235699888731      22456677788999999  555554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.091  Score=40.33  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=61.5

Q ss_pred             hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCC-CCCC
Q 021691          128 SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDD-FPYI  205 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~-~~~~  205 (309)
                      ....+.+|.+||=+|+|. |++.+.+|+..++ +++++|.+++-++.+++    .+..      .+  ++..+.. ....
T Consensus        24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~----lGad------~~--i~~~~~~~~~~~   90 (168)
T d1uufa2          24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD------EV--VNSRNADEMAAH   90 (168)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS------EE--EETTCHHHHHTT
T ss_pred             HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhc----cCCc------EE--EECchhhHHHHh
Confidence            345677899999999985 8888999998765 67788888876666654    2321      11  1211111 1112


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ...+|+++-.  .-..    ..+....++++++|  .++++.
T Consensus        91 ~~~~D~vid~--~g~~----~~~~~~~~~l~~~G--~iv~~G  124 (168)
T d1uufa2          91 LKSFDFILNT--VAAP----HNLDDFTTLLKRDG--TMTLVG  124 (168)
T ss_dssp             TTCEEEEEEC--CSSC----CCHHHHHTTEEEEE--EEEECC
T ss_pred             cCCCceeeee--eecc----hhHHHHHHHHhcCC--EEEEec
Confidence            3579988763  2222    22455667889998  555554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.68  E-value=0.14  Score=39.48  Aligned_cols=105  Identities=11%  Similarity=-0.022  Sum_probs=65.7

Q ss_pred             ccHHHHHHHHh-hCcCcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          117 PSEDVLAFFSL-SHADMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       117 ~sa~~La~~l~-~~~~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      +++..-++... ....+.+|.+||=+|+|. |...+.+++..++.+|+++|.+++-++.+++.    +..      .+  
T Consensus        10 ~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~------~~--   77 (176)
T d2jhfa2          10 GCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT------EC--   77 (176)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS------EE--
T ss_pred             hcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCe------eE--
Confidence            33444444433 445678999999999974 67777788888889999999999887777653    321      11  


Q ss_pred             eeCCCCCCC-------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          195 LHWNQDDFP-------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       195 l~w~~~~~~-------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      .+..+.+..       ...+.+|+|+-.-      -.+..++....+++++|
T Consensus        78 i~~~~~~~~~~~~~~~~~~~G~D~vid~~------G~~~~~~~a~~~~~~~~  123 (176)
T d2jhfa2          78 VNPQDYKKPIQEVLTEMSNGGVDFSFEVI------GRLDTMVTALSCCQEAY  123 (176)
T ss_dssp             ECGGGCSSCHHHHHHHHTTSCBSEEEECS------CCHHHHHHHHHHBCTTT
T ss_pred             EecCCchhHHHHHHHHHhcCCCCEEEecC------CchhHHHHHHHHHhcCC
Confidence            111111100       1235689887732      22455666677777765

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.024  Score=44.60  Aligned_cols=145  Identities=14%  Similarity=0.104  Sum_probs=73.6

Q ss_pred             HhhCcCcCCCCeEEEeCCC-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-C
Q 021691          126 SLSHADMFRSKRVIELGSG-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-P  203 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-~  203 (309)
                      +.......++++||=|||| +|...+......+..+++.++.+++.++.++.-++.-+..   ....+...+|.+... .
T Consensus         9 l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~   85 (182)
T d1vi2a1           9 IKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN---TDCVVTVTDLADQQAFA   85 (182)
T ss_dssp             HHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH---SSCEEEEEETTCHHHHH
T ss_pred             HHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhh---cCcceEeeecccccchh
Confidence            3333334688999999998 3433333334457789999999877666655433321110   112334455543211 1


Q ss_pred             CCCCCccEEEEcCCCCCccc-HHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCchhhh
Q 021691          204 YIVDTFDVIVASDCTFFKEF-HKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAEIWK  280 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~-~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~~~~  280 (309)
                      .....+|+||.+-++-.... .+.+... ...++++.    ++++.......-.|++.+++.|.++  +.-.+.-+++
T Consensus        86 ~~~~~~diiIN~Tp~G~~~~~~~~~~~~-~~~~~~~~----~v~Di~Y~p~~T~ll~~a~~~g~~~--i~Gl~Mli~Q  156 (182)
T d1vi2a1          86 EALASADILTNGTKVGMKPLENESLVND-ISLLHPGL----LVTECVYNPHMTKLLQQAQQAGCKT--IDGYGMLLWQ  156 (182)
T ss_dssp             HHHHTCSEEEECSSTTSTTSCSCCSCCC-GGGSCTTC----EEEECCCSSSSCHHHHHHHTTTCEE--ECHHHHHHHH
T ss_pred             hhhcccceeccccCCccccccchhhhhH-HHhhhcch----hhHHhhcCccccHHHHHHHHCcCeE--eccHHHHHHH
Confidence            11246899998765533210 0000000 12233433    3333322112246888899999876  4444444443

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.24  E-value=0.14  Score=39.33  Aligned_cols=116  Identities=13%  Similarity=0.069  Sum_probs=62.5

Q ss_pred             CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ...++++||=||||- |..-+...+..+..+++.+..+++-.+.+....   +.         ..+++.      ....+
T Consensus        13 ~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~---~~---------~~~~~~------~~~~~   74 (167)
T d1npya1          13 HLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY---GY---------AYINSL------ENQQA   74 (167)
T ss_dssp             TCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH---TC---------EEESCC------TTCCC
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh---hh---------hhhhcc------cccch
Confidence            344789999999984 444333334456678999999987666554432   11         112221      12468


Q ss_pred             cEEEEcCCCCCcccHHHH-HHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeE
Q 021691          210 DVIVASDCTFFKEFHKDL-ARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHF  268 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~l-l~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~  268 (309)
                      |+||-+-++-.....+.. +..-...++++.    ++++.......-.|++.+++.|..+
T Consensus        75 DliINaTpiGm~~~~~~~~l~~~~~~~~~~~----~v~D~vY~P~~T~ll~~A~~~G~~~  130 (167)
T d1npya1          75 DILVNVTSIGMKGGKEEMDLAFPKAFIDNAS----VAFDVVAMPVETPFIRYAQARGKQT  130 (167)
T ss_dssp             SEEEECSSTTCTTSTTTTSCSSCHHHHHHCS----EEEECCCSSSSCHHHHHHHHTTCEE
T ss_pred             hhheeccccCCccccccccccccHhhcCCcc----eEEEEeeccCCCHHHHHHHHCCCeE
Confidence            999987665321111000 000012233433    3334222112235889999999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.12  E-value=0.23  Score=37.77  Aligned_cols=109  Identities=11%  Similarity=0.058  Sum_probs=59.8

Q ss_pred             CeEEEeCCCC-C-hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          136 KRVIELGSGY-G-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       136 ~~VLELG~Gt-G-~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      ++|+=+|||. | .++..+.+.....+|++.|.+++.++.+++.    +..   ..+    ..   ..........|+|+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~---~~~----~~---~~~~~~~~~~dlIi   67 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GII---DEG----TT---SIAKVEDFSPDFVM   67 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSC---SEE----ES---CGGGGGGTCCSEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcc---hhh----hh---hhhhhhcccccccc
Confidence            3577788873 3 3444444432345899999999998888753    221   000    00   00111123579998


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHh
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEG  263 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~  263 (309)
                      .+-+   ......++..+...++++.  .++-.+.......+.+.+.+..
T Consensus        68 la~p---~~~~~~vl~~l~~~~~~~~--ii~d~~s~k~~~~~~~~~~~~~  112 (171)
T d2g5ca2          68 LSSP---VRTFREIAKKLSYILSEDA--TVTDQGSVKGKLVYDLENILGK  112 (171)
T ss_dssp             ECSC---HHHHHHHHHHHHHHSCTTC--EEEECCSCCTHHHHHHHHHHGG
T ss_pred             ccCC---chhhhhhhhhhhccccccc--cccccccccHHHHHHHHHhhcc
Confidence            8655   3456677788888887665  2222222234444444444443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.03  E-value=0.028  Score=43.90  Aligned_cols=109  Identities=19%  Similarity=0.155  Sum_probs=66.8

Q ss_pred             ccHHHHHHHHh-hCcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          117 PSEDVLAFFSL-SHADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       117 ~sa~~La~~l~-~~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      |.+...|.+.+ ....+.+|.+||=.|+ | .|..++.+|+..++ +|++++.+++-.+.+++    .+..    .+   
T Consensus         7 ~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~----~Ga~----~v---   74 (183)
T d1pqwa_           7 GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE----YV---   74 (183)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS----EE---
T ss_pred             hHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccc----cccc----cc---
Confidence            44445555554 3446778999999874 4 58888888888764 88888878776666653    3431    11   


Q ss_pred             EeeCCCCCCC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          194 TLHWNQDDFP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       194 ~l~w~~~~~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                       .+..+.+..      .....||+|+..  +.     ...++...++|+++|  .++.+.
T Consensus        75 -i~~~~~~~~~~v~~~t~~~g~d~v~d~--~g-----~~~~~~~~~~l~~~G--~~v~~G  124 (183)
T d1pqwa_          75 -GDSRSVDFADEILELTDGYGVDVVLNS--LA-----GEAIQRGVQILAPGG--RFIELG  124 (183)
T ss_dssp             -EETTCSTHHHHHHHHTTTCCEEEEEEC--CC-----THHHHHHHHTEEEEE--EEEECS
T ss_pred             -ccCCccCHHHHHHHHhCCCCEEEEEec--cc-----chHHHHHHHHhcCCC--EEEEEc
Confidence             222222210      123579999863  22     234566778999998  555543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.17  Score=38.85  Aligned_cols=109  Identities=17%  Similarity=0.140  Sum_probs=69.5

Q ss_pred             ccHHHHHHHHhh-CcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE
Q 021691          117 PSEDVLAFFSLS-HADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM  193 (309)
Q Consensus       117 ~sa~~La~~l~~-~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~  193 (309)
                      |.+...|.+.+. ...+.+|.+||=.|+ | .|..++.+|+..++ +|++++.+++-++.+++    .+..    .  + 
T Consensus        10 ~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~----~--v-   77 (174)
T d1yb5a2          10 GIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH----E--V-   77 (174)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----E--E-
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCcc----c--c-
Confidence            344445555543 446778999999996 4 58888888988765 89999988877666653    3331    1  1 


Q ss_pred             EeeCCCCCC------CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          194 TLHWNQDDF------PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       194 ~l~w~~~~~------~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                       ++-.+.+.      ......+|+|+.+-     .  ...++...++++++|  .++.+.
T Consensus        78 -i~~~~~~~~~~i~~~t~~~g~d~v~d~~-----g--~~~~~~~~~~l~~~G--~iv~~G  127 (174)
T d1yb5a2          78 -FNHREVNYIDKIKKYVGEKGIDIIIEML-----A--NVNLSKDLSLLSHGG--RVIVVG  127 (174)
T ss_dssp             -EETTSTTHHHHHHHHHCTTCEEEEEESC-----H--HHHHHHHHHHEEEEE--EEEECC
T ss_pred             -cccccccHHHHhhhhhccCCceEEeecc-----c--HHHHHHHHhccCCCC--EEEEEe
Confidence             22222211      01245699998741     1  346777888999999  555543

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.74  E-value=0.21  Score=43.47  Aligned_cols=60  Identities=27%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             HHHHHHHHhhC---cCcCCCCeEEEeCCCCChhhHHHHHhc-------CCcEEEEEcCCHHHHHHHHHHH
Q 021691          119 EDVLAFFSLSH---ADMFRSKRVIELGSGYGLAGLVIAATT-------EALEVVISDGNPQVVDYIQRNV  178 (309)
Q Consensus       119 a~~La~~l~~~---~~~~~g~~VLELG~GtG~~~l~la~~~-------~~~~V~~tD~~~~~l~~~~~n~  178 (309)
                      +..+|.|+...   .......+|+|+|+|.|.++.-+.+.+       ...+++.++.++...+.-+.++
T Consensus        61 g~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l  130 (365)
T d1zkda1          61 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  130 (365)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence            35566666542   122234589999999998876554433       2347999999997655555443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.45  E-value=0.094  Score=40.51  Aligned_cols=107  Identities=14%  Similarity=0.174  Sum_probs=65.5

Q ss_pred             ccHHHHHHHHhhCcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          117 PSEDVLAFFSLSHADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       117 ~sa~~La~~l~~~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      +.+..-|.+.+....+.+|++||=.|+ | .|...+.+|+..|+ +|++++.+++-++.+++    .+.+    .+    
T Consensus        10 ~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~----~~----   76 (171)
T d1iz0a2          10 PVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE----EA----   76 (171)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS----EE----
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----cccc----ee----
Confidence            334444555566567789999999985 4 47888888988765 89999988876666654    3331    11    


Q ss_pred             eeCCCCC-CCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          195 LHWNQDD-FPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       195 l~w~~~~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      .+..+.. .......+|+|+-  +.-  +.    +....++++++|  .++.+
T Consensus        77 i~~~~~~~~~~~~~g~D~v~d--~~G--~~----~~~~~~~l~~~G--~~v~~  119 (171)
T d1iz0a2          77 ATYAEVPERAKAWGGLDLVLE--VRG--KE----VEESLGLLAHGG--RLVYI  119 (171)
T ss_dssp             EEGGGHHHHHHHTTSEEEEEE--CSC--TT----HHHHHTTEEEEE--EEEEC
T ss_pred             eehhhhhhhhhcccccccccc--ccc--hh----HHHHHHHHhcCC--cEEEE
Confidence            1111100 0011346999886  322  22    455667899999  55544

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.78  E-value=0.31  Score=37.94  Aligned_cols=115  Identities=11%  Similarity=0.056  Sum_probs=61.2

Q ss_pred             HHHHHHHHhhC-cCcCCCCeEEEeCCC---CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEE
Q 021691          119 EDVLAFFSLSH-ADMFRSKRVIELGSG---YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMT  194 (309)
Q Consensus       119 a~~La~~l~~~-~~~~~g~~VLELG~G---tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~  194 (309)
                      .-.-|.+.+.+ ..+.+|.+||=+.+|   .|..++.+|+..++ +|+++-.+++-.+...+.++..+.+   ..+....
T Consensus        12 ~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad---~vi~~~~   87 (189)
T d1gu7a2          12 NPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGAT---QVITEDQ   87 (189)
T ss_dssp             HHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhcccc---EEEeccc
Confidence            34445555544 466788888887333   36677778888765 7777654544444444444445542   0111100


Q ss_pred             eeCCCCCC------CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 021691          195 LHWNQDDF------PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFF  246 (309)
Q Consensus       195 l~w~~~~~------~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~  246 (309)
                      .++.+...      ......+|+|+-  ++.     ...+....++|+++|  .++.+
T Consensus        88 ~~~~~~~~~v~~~~~~~g~~vdvv~D--~vg-----~~~~~~~~~~l~~~G--~~v~~  136 (189)
T d1gu7a2          88 NNSREFGPTIKEWIKQSGGEAKLALN--CVG-----GKSSTGIARKLNNNG--LMLTY  136 (189)
T ss_dssp             HHCGGGHHHHHHHHHHHTCCEEEEEE--SSC-----HHHHHHHHHTSCTTC--EEEEC
T ss_pred             cchhHHHHHHHHHHhhccCCceEEEE--CCC-----cchhhhhhhhhcCCc--EEEEE
Confidence            11110000      001245888874  332     334566778999999  55554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=1.4  Score=35.53  Aligned_cols=82  Identities=12%  Similarity=0.181  Sum_probs=55.5

Q ss_pred             cCCCCeEEEeCCCCChh---hHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-----
Q 021691          132 MFRSKRVIELGSGYGLA---GLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-----  203 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~---~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-----  203 (309)
                      ...||.||=-|++.|+-   +..+|+.  +.+|+.+|.+++-++.+.+.+...+.     ++.....|..+.+.-     
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~~-----~~~~~~~Dvs~~~~v~~~~~   76 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGA-----KVHTFVVDCSNREDIYSSAK   76 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEeeCCCHHHHHHHHH
Confidence            46899999989988743   3344443  67999999999999988888876543     456666665543210     


Q ss_pred             ---CCCCCccEEEEcCCCCC
Q 021691          204 ---YIVDTFDVIVASDCTFF  220 (309)
Q Consensus       204 ---~~~~~fDvIi~~d~ly~  220 (309)
                         ...+..|+++.+--...
T Consensus        77 ~i~~~~g~idilinnag~~~   96 (244)
T d1yb1a_          77 KVKAEIGDVSILVNNAGVVY   96 (244)
T ss_dssp             HHHHHTCCCSEEEECCCCCC
T ss_pred             HHHHHcCCCceeEeeccccc
Confidence               11356899888664443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.88  E-value=0.64  Score=38.06  Aligned_cols=81  Identities=11%  Similarity=0.094  Sum_probs=52.9

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--------  202 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--------  202 (309)
                      .+||+||=.|+..| +|..+|+.+  .+.+|+++|.+++-++.+.+.+...+.     .+.....|..+.+.        
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~-----~~~~~~~D~s~~~~~~~~~~~~   77 (258)
T d1ae1a_           4 LKGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-----NVEGSVCDLLSRTERDKLMQTV   77 (258)
T ss_dssp             CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEeecCCHHHHHHHHHHH
Confidence            47999999999765 333333322  357999999999988888887776654     45555666554321        


Q ss_pred             -CCCCCCccEEEEcCCCC
Q 021691          203 -PYIVDTFDVIVASDCTF  219 (309)
Q Consensus       203 -~~~~~~fDvIi~~d~ly  219 (309)
                       ....+..|+++.+--..
T Consensus        78 ~~~~~g~idilinnag~~   95 (258)
T d1ae1a_          78 AHVFDGKLNILVNNAGVV   95 (258)
T ss_dssp             HHHTTSCCCEEEECCCCC
T ss_pred             HHHhCCCcEEEecccccc
Confidence             11235688888754333

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=89.67  E-value=0.4  Score=39.37  Aligned_cols=123  Identities=11%  Similarity=-0.036  Sum_probs=74.4

Q ss_pred             CCCCceeecccHHHHHHHHhhCcCcCCCCeEEEeCCCCChhhHHHHHhcC------------------------------
Q 021691          108 DNTGLVCHWPSEDVLAFFSLSHADMFRSKRVIELGSGYGLAGLVIAATTE------------------------------  157 (309)
Q Consensus       108 ~~tG~~~~W~sa~~La~~l~~~~~~~~g~~VLELG~GtG~~~l~la~~~~------------------------------  157 (309)
                      +.+++. +=.++..|+.-+... .--.+..++|--||+|.+.+..|....                              
T Consensus        26 ~~~~~~-~~Laa~il~~al~l~-~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a  103 (249)
T d1o9ga_          26 GYPAFP-VRLATEIFQRALARL-PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAG  103 (249)
T ss_dssp             TBCCCC-HHHHHHHHHHHHHTS-SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHH
T ss_pred             CCCCcc-hHHHHHHHHHHhhhh-cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHH
Confidence            444443 335666666655432 223445799999999999887665310                              


Q ss_pred             ----------CcEEEEEcCCHHHHHHH---HHHHHhccCCCCCCceEEEEeeCCCCCC---CCCCCCccEEEEcCCCCCc
Q 021691          158 ----------ALEVVISDGNPQVVDYI---QRNVDANSGAFGGTTVKSMTLHWNQDDF---PYIVDTFDVIVASDCTFFK  221 (309)
Q Consensus       158 ----------~~~V~~tD~~~~~l~~~---~~n~~~n~~~~~~~~v~~~~l~w~~~~~---~~~~~~fDvIi~~d~ly~~  221 (309)
                                ..++++.|.++++++.+   +.|+...++.   ..+.+...|.-....   .......++||++.+ |..
T Consensus       104 ~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~---~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP-YGE  179 (249)
T d1o9ga_         104 LTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGA---LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP-YGE  179 (249)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSS---CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC-GGG
T ss_pred             HHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCC---ceeeeeecchhccCcchhccCCCCCCEEEeCCC-ccc
Confidence                      02467899999999888   4588877773   456666665432211   012345689999554 542


Q ss_pred             ----------ccHHHHHHHHHHHHh
Q 021691          222 ----------EFHKDLARIIKFLLK  236 (309)
Q Consensus       222 ----------~~~~~ll~~l~~lLk  236 (309)
                                +.+..+...+.+.+.
T Consensus       180 Rl~~~~~~~~~~~~~~~~~l~~~~p  204 (249)
T d1o9ga_         180 RTHWEGQVPGQPVAGLLRSLASALP  204 (249)
T ss_dssp             SSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred             cccccccchHHHHHHHHHHHHccCC
Confidence                      235556666777664

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.46  E-value=0.42  Score=36.99  Aligned_cols=106  Identities=13%  Similarity=0.032  Sum_probs=63.4

Q ss_pred             HhhCcCcCCCCeEEEeCCC--CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC
Q 021691          126 SLSHADMFRSKRVIELGSG--YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP  203 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~G--tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~  203 (309)
                      +.......+|.+||=-|++  .|.+++.+|+..+ .+|+++..+++-.+.++.    .+..    .+.-..-+|.+....
T Consensus        23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~k~~~~~~----lGa~----~vi~~~~~~~~~~~~   93 (176)
T d1xa0a2          23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRV----LGAK----EVLAREDVMAERIRP   93 (176)
T ss_dssp             HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHH----TTCS----EEEECC---------
T ss_pred             HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchHHHHHHHh----cccc----eeeecchhHHHHHHH
Confidence            3344556678999999864  4788888898865 589999988877777764    2321    111111112111112


Q ss_pred             CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeec
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPK  249 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~  249 (309)
                      ...+.+|+|+-.  +-     ...+....++|+++|  .++.+...
T Consensus        94 ~~~~gvD~vid~--vg-----g~~~~~~l~~l~~~G--riv~~G~~  130 (176)
T d1xa0a2          94 LDKQRWAAAVDP--VG-----GRTLATVLSRMRYGG--AVAVSGLT  130 (176)
T ss_dssp             CCSCCEEEEEEC--ST-----TTTHHHHHHTEEEEE--EEEECSCC
T ss_pred             hhccCcCEEEEc--CC-----chhHHHHHHHhCCCc--eEEEeecc
Confidence            234679988763  22     234677888999999  56665543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.45  E-value=1.3  Score=36.09  Aligned_cols=80  Identities=10%  Similarity=0.095  Sum_probs=51.6

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC--------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF--------  202 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~--------  202 (309)
                      ..||++|=-|++.|+ |..+|+.+  .+.+|+++|.+++-++.+.+.+...+.     ++.+...|..+.+.        
T Consensus         6 L~GK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-----~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d2ae2a_           6 LEGCTALVTGGSRGI-GYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-----KVEASVCDLSSRSERQELMNTV   79 (259)
T ss_dssp             CTTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----EEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEeeCCCHHHHHHHHHHH
Confidence            479999999987663 33333322  256999999999999888877766543     44555555543221        


Q ss_pred             -CCCCCCccEEEEcCCC
Q 021691          203 -PYIVDTFDVIVASDCT  218 (309)
Q Consensus       203 -~~~~~~fDvIi~~d~l  218 (309)
                       .....+.|+++.+--.
T Consensus        80 ~~~~~~~idilvnnAG~   96 (259)
T d2ae2a_          80 ANHFHGKLNILVNNAGI   96 (259)
T ss_dssp             HHHTTTCCCEEEECCCC
T ss_pred             HHHhCCCceEEEECCce
Confidence             0113468999886543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.08  E-value=0.16  Score=39.81  Aligned_cols=105  Identities=12%  Similarity=0.064  Sum_probs=60.9

Q ss_pred             CCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEE-------Ee--eCCCCCCC
Q 021691          134 RSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSM-------TL--HWNQDDFP  203 (309)
Q Consensus       134 ~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~-------~l--~w~~~~~~  203 (309)
                      +..+|+=||+|+ |+.++..|+.+|+ .|++.|.++..++.++.....+-...........       .+  +|......
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            567999999996 9999998988865 9999999999988887643222100000000000       00  00000000


Q ss_pred             ---CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          204 ---YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       204 ---~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                         ..-...|+||.+-.+.....+.-+-+.+-+.+|||.
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GS  145 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGS  145 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTC
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCc
Confidence               001357999987655554433334466777788877

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=88.89  E-value=0.47  Score=36.20  Aligned_cols=103  Identities=13%  Similarity=0.131  Sum_probs=64.7

Q ss_pred             HHHHhh-CcCcCCCCeEEEeCCC--CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCC
Q 021691          123 AFFSLS-HADMFRSKRVIELGSG--YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQ  199 (309)
Q Consensus       123 a~~l~~-~~~~~~g~~VLELG~G--tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~  199 (309)
                      |.+.+. ...+.+|++||=.|+|  .|...+.+|+..+ .+|+++|.+++-.+.+++.    +..      .  .++..+
T Consensus        16 A~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~~~~~~l----Ga~------~--vi~~~~   82 (179)
T d1qora2          16 VYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKA----GAW------Q--VINYRE   82 (179)
T ss_dssp             HHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH----TCS------E--EEETTT
T ss_pred             HHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHHHHHHhc----CCe------E--EEECCC
Confidence            444443 3466789999999665  4788888888876 5899999999888887642    321      1  122222


Q ss_pred             CCCC------CCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          200 DDFP------YIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       200 ~~~~------~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ++..      .....+|+|+-+  .- .    ..+.....+++++|  .++++.
T Consensus        83 ~d~~~~v~~~t~g~g~d~v~d~--~g-~----~~~~~~~~~l~~~G--~~v~~g  127 (179)
T d1qora2          83 EDLVERLKEITGGKKVRVVYDS--VG-R----DTWERSLDCLQRRG--LMVSFG  127 (179)
T ss_dssp             SCHHHHHHHHTTTCCEEEEEEC--SC-G----GGHHHHHHTEEEEE--EEEECC
T ss_pred             CCHHHHHHHHhCCCCeEEEEeC--cc-H----HHHHHHHHHHhcCC--eeeecc
Confidence            2210      123568988763  21 1    24567778889988  454443

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.73  E-value=1.5  Score=33.30  Aligned_cols=118  Identities=11%  Similarity=0.106  Sum_probs=65.4

Q ss_pred             CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      ...++++||=+|||. |..-+.... .++.+|+.+..+++-.+.+.+++....      .+.  ...|...    ....+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~-~~~~~i~I~nR~~~~a~~l~~~~~~~~------~~~--~~~~~~~----~~~~~   80 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLL-QAQQNIVLANRTFSKTKELAERFQPYG------NIQ--AVSMDSI----PLQTY   80 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHH-HTTCEEEEEESSHHHHHHHHHHHGGGS------CEE--EEEGGGC----CCSCC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHc-ccCceeeeccchHHHHHHHHHHHhhcc------ccc--hhhhccc----ccccc
Confidence            456899999999984 433333223 356799999999877776666554321      222  3333322    23579


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~  267 (309)
                      |+||.+-++.......   ......++++.   +++-....+...-.|+..+++.|..
T Consensus        81 diiIN~tp~g~~~~~~---~~~~~~~~~~~---~~~D~vy~~p~~T~~l~~A~~~g~~  132 (171)
T d1p77a1          81 DLVINATSAGLSGGTA---SVDAEILKLGS---AFYDMQYAKGTDTPFIALCKSLGLT  132 (171)
T ss_dssp             SEEEECCCC----------CCCHHHHHHCS---CEEESCCCTTSCCHHHHHHHHTTCC
T ss_pred             ceeeeccccccccccc---chhhhhhcccc---eeeeeeccCcccHHHHHHHHHcCCC
Confidence            9999987665433222   11223455555   2222222122223688899998874

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.60  E-value=0.21  Score=38.00  Aligned_cols=115  Identities=16%  Similarity=0.092  Sum_probs=66.2

Q ss_pred             EEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          138 VIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       138 VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      |-=+|+|.  .|..+|+.+  .+.+|++.|.+++.++.++..    +..       .    .  ..........|+|+.+
T Consensus         3 IgiIGlG~--MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~----~~~-------~----~--~~~~e~~~~~d~ii~~   63 (161)
T d1vpda2           3 VGFIGLGI--MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA----GAE-------T----A--STAKAIAEQCDVIITM   63 (161)
T ss_dssp             EEEECCST--THHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCE-------E----C--SSHHHHHHHCSEEEEC
T ss_pred             EEEEehhH--HHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh----hhh-------h----c--ccHHHHHhCCCeEEEE
Confidence            33356653  444433322  257899999999887777542    221       0    0  0101112357988884


Q ss_pred             CCCCCcccHHHHH---HHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccC
Q 021691          216 DCTFFKEFHKDLA---RIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       216 d~ly~~~~~~~ll---~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                        +-.......++   ..+...++++.  .++-+++..+.+..++.+.+.+.|..+.......
T Consensus        64 --v~~~~~v~~v~~~~~~~~~~~~~g~--iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~g  122 (161)
T d1vpda2          64 --LPNSPHVKEVALGENGIIEGAKPGT--VLIDMSSIAPLASREISDALKAKGVEMLDAPVSG  122 (161)
T ss_dssp             --CSSHHHHHHHHHSTTCHHHHCCTTC--EEEECSCCCHHHHHHHHHHHHTTTCEEEECCEES
T ss_pred             --cCCHHHHHHHHhCCcchhhccCCCC--EEEECCCCCHHHHHHHHHHHHHcCCceecccccC
Confidence              33344444444   23455555655  4555666677888889999999998876544433

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=1  Score=36.86  Aligned_cols=84  Identities=15%  Similarity=0.260  Sum_probs=50.6

Q ss_pred             CcCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-----
Q 021691          131 DMFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-----  203 (309)
Q Consensus       131 ~~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-----  203 (309)
                      ...+||+||=-|++.|+ |..+|+.+  .+.+|++++.+++-++.+...+.....    ..+.....+.......     
T Consensus        10 ~~L~GK~alITGassGI-G~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~   84 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGI-GREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA----ASAHYIAGTMEDMTFAEQFVA   84 (269)
T ss_dssp             GGGTTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC----SEEEEEECCTTCHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc----ccchhhhhhhhhHHHHHHHHH
Confidence            45789999999998873 33333322  257999999999999888776554432    2333333333221100     


Q ss_pred             ---CCCCCccEEEEcCCCC
Q 021691          204 ---YIVDTFDVIVASDCTF  219 (309)
Q Consensus       204 ---~~~~~fDvIi~~d~ly  219 (309)
                         ...+..|+++.+...+
T Consensus        85 ~~~~~~g~~~~li~nag~~  103 (269)
T d1xu9a_          85 QAGKLMGGLDMLILNHITN  103 (269)
T ss_dssp             HHHHHHTSCSEEEECCCCC
T ss_pred             HHHHHhCCccccccccccc
Confidence               0125678887765444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=87.93  E-value=0.66  Score=35.21  Aligned_cols=121  Identities=19%  Similarity=0.136  Sum_probs=65.3

Q ss_pred             CeEEEeCCCC-C-hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEE
Q 021691          136 KRVIELGSGY-G-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIV  213 (309)
Q Consensus       136 ~~VLELG~Gt-G-~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi  213 (309)
                      |+|.=+|+|. | .++..|++.  +.+|++.|.+++-++.++.+-...... ...........-. .+.......+|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEG-PGLAGTAHPDLLT-SDIGLAVKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEES-SSCCEEECCSEEE-SCHHHHHTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhh-hhhhhhhhhhhhh-hhhHhHhcCCCEEE
Confidence            6778889985 4 333344443  579999999998877766432111100 0000000000000 00001124689999


Q ss_pred             EcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCC
Q 021691          214 ASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHL  266 (309)
Q Consensus       214 ~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~  266 (309)
                      .+-.   ......+++.+..+++++.   .++...........+...+...+.
T Consensus        78 i~v~---~~~~~~~~~~i~~~l~~~~---~iv~~~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          78 IVVP---AIHHASIAANIASYISEGQ---LIILNPGATGGALEFRKILRENGA  124 (184)
T ss_dssp             ECSC---GGGHHHHHHHHGGGCCTTC---EEEESSCCSSHHHHHHHHHHHTTC
T ss_pred             EEEc---hhHHHHHHHHhhhccCCCC---EEEEeCCCCccHHHHHHHHHHhcC
Confidence            8643   3456788888888887765   455444443444456666666553

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.92  E-value=1.1  Score=36.53  Aligned_cols=80  Identities=10%  Similarity=0.042  Sum_probs=52.1

Q ss_pred             CCCCeEEEeCCCCCh---hhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCC-------
Q 021691          133 FRSKRVIELGSGYGL---AGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDF-------  202 (309)
Q Consensus       133 ~~g~~VLELG~GtG~---~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~-------  202 (309)
                      .+||+||=-|++.|+   .+..+++.  +.+|+++|.+++-++.+.+.+...+.     ++.....|..+.+.       
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~   78 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGF-----QVTGSVCDASLRPEREKLMQT   78 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-----ceEEEeccCCCHHHHHHHHHH
Confidence            379999999987764   23333443  56999999999998888887766543     45566665543321       


Q ss_pred             --CCCCCCccEEEEcCCCC
Q 021691          203 --PYIVDTFDVIVASDCTF  219 (309)
Q Consensus       203 --~~~~~~fDvIi~~d~ly  219 (309)
                        ....+..|+++.+--..
T Consensus        79 ~~~~~~g~idilvnnAG~~   97 (259)
T d1xq1a_          79 VSSMFGGKLDILINNLGAI   97 (259)
T ss_dssp             HHHHHTTCCSEEEEECCC-
T ss_pred             HHHHhCCCccccccccccc
Confidence              01135789998865443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.10  E-value=1.2  Score=36.03  Aligned_cols=80  Identities=14%  Similarity=0.175  Sum_probs=49.4

Q ss_pred             CCCCeEEEeCCCCCh---hhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC------
Q 021691          133 FRSKRVIELGSGYGL---AGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~---~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------  203 (309)
                      ++||++|=-|++.|+   .+..+++.  +.+|+++|.+++-++.+.+.+....-    .++.....|..+.+.-      
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~g----~~~~~~~~Dv~~~~~v~~~~~~   76 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYG----VETMAFRCDVSNYEEVKKLLEA   76 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHC----CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhC----CcEEEEEccCCCHHHHHHHHHH
Confidence            478999999987763   23333443  57999999999888777665543321    2455555655433210      


Q ss_pred             --CCCCCccEEEEcCCC
Q 021691          204 --YIVDTFDVIVASDCT  218 (309)
Q Consensus       204 --~~~~~fDvIi~~d~l  218 (309)
                        ..-++.|++|.+--+
T Consensus        77 ~~~~~g~iDiLVnnAG~   93 (251)
T d1vl8a_          77 VKEKFGKLDTVVNAAGI   93 (251)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence              012578999986544

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.81  E-value=1.6  Score=33.47  Aligned_cols=100  Identities=10%  Similarity=0.114  Sum_probs=59.8

Q ss_pred             hCcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCC
Q 021691          128 SHADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYI  205 (309)
Q Consensus       128 ~~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~  205 (309)
                      .......+.+||=.|+ | .|..++.+|+..|+ +|+++..+++-.+.++..    +.+      .+...+-........
T Consensus        25 ~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~l----Gad------~vi~~~~~~~~~~l~   93 (177)
T d1o89a2          25 DAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSL----GAS------RVLPRDEFAESRPLE   93 (177)
T ss_dssp             HTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TEE------EEEEGGGSSSCCSSC
T ss_pred             HhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhh----ccc------cccccccHHHHHHHH
Confidence            3333445567886664 2 47778888998754 899999998887777642    221      111111111111123


Q ss_pred             CCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          206 VDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       206 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      ...+|.|+  |++.     ...+....+.++++|  .++.+.
T Consensus        94 ~~~~~~vv--D~Vg-----g~~~~~~l~~l~~~G--riv~~G  126 (177)
T d1o89a2          94 KQVWAGAI--DTVG-----DKVLAKVLAQMNYGG--CVAACG  126 (177)
T ss_dssp             CCCEEEEE--ESSC-----HHHHHHHHHTEEEEE--EEEECC
T ss_pred             hhcCCeeE--EEcc-----hHHHHHHHHHhcccc--ceEeec
Confidence            45678875  5543     345778888899999  566554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.64  E-value=1.5  Score=35.53  Aligned_cols=81  Identities=14%  Similarity=0.100  Sum_probs=54.2

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------  203 (309)
                      +.||.+|=-|++.| +|..+|+.+  .+.+|+++|.+++.++.+.+.+...+.     ++.....|..+.+.-       
T Consensus         8 lenKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-----~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           8 GENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-----ESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             CSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-----CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEccCCCHHHHHHHHHHH
Confidence            46889998898766 455555543  356999999999999988888766543     455566665543210       


Q ss_pred             -CCCCCccEEEEcCCCC
Q 021691          204 -YIVDTFDVIVASDCTF  219 (309)
Q Consensus       204 -~~~~~fDvIi~~d~ly  219 (309)
                       ..-+..|+++.+....
T Consensus        82 ~~~~g~iDilvnnag~~   98 (251)
T d2c07a1          82 LTEHKNVDILVNNAGIT   98 (251)
T ss_dssp             HHHCSCCCEEEECCCCC
T ss_pred             HHhcCCceeeeeccccc
Confidence             1136789998865443

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=0.82  Score=37.18  Aligned_cols=89  Identities=11%  Similarity=0.077  Sum_probs=56.5

Q ss_pred             CCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC--------
Q 021691          134 RSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP--------  203 (309)
Q Consensus       134 ~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~--------  203 (309)
                      .||.+|=-|++.|+ |..+|+.+  .+.+|+++|.+++-++.+...+.....   ..++.+...|..+.+.-        
T Consensus         2 ~GKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           2 NGKVALVTGAAQGI-GRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE---PQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC---GGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC---CCcEEEEEeecCCHHHHHHHHHHHH
Confidence            68999999987663 44444432  367999999999888877766543221   23566666666543210        


Q ss_pred             CCCCCccEEEEcCCCCCcccHHH
Q 021691          204 YIVDTFDVIVASDCTFFKEFHKD  226 (309)
Q Consensus       204 ~~~~~fDvIi~~d~ly~~~~~~~  226 (309)
                      ..-++.|+++.+--.....+.+.
T Consensus        78 ~~~G~iDilVnnAg~~~~~~~~~  100 (254)
T d2gdza1          78 DHFGRLDILVNNAGVNNEKNWEK  100 (254)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHHH
T ss_pred             HHcCCcCeecccccccccccchh
Confidence            01257899999776666555443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.95  E-value=1.6  Score=35.48  Aligned_cols=84  Identities=12%  Similarity=0.137  Sum_probs=56.3

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC------
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------  203 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------  203 (309)
                      .++||.||=-|++.|+ |..+|+.+  .+.+|+++|.+++-++.+.+.+...+.   ..++.....|..+++.-      
T Consensus         7 ~lk~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~---~~~~~~~~~Dls~~~~v~~~v~~   82 (257)
T d1xg5a_           7 RWRDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY---PGTLIPYRCDLSNEEDILSMFSA   82 (257)
T ss_dssp             GGTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC---CceEEEEEccCCCHHHHHHHHHH
Confidence            4789999999988764 33334432  357999999999999988887776654   23566666666543210      


Q ss_pred             --CCCCCccEEEEcCCCC
Q 021691          204 --YIVDTFDVIVASDCTF  219 (309)
Q Consensus       204 --~~~~~fDvIi~~d~ly  219 (309)
                        ...+..|++|.+-...
T Consensus        83 ~~~~~g~iD~lVnnAg~~  100 (257)
T d1xg5a_          83 IRSQHSGVDICINNAGLA  100 (257)
T ss_dssp             HHHHHCCCSEEEECCCCC
T ss_pred             HHHhcCCCCEEEeccccc
Confidence              0125789998865443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=84.17  E-value=0.94  Score=34.55  Aligned_cols=121  Identities=9%  Similarity=0.007  Sum_probs=68.0

Q ss_pred             EEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEc
Q 021691          138 VIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVAS  215 (309)
Q Consensus       138 VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~  215 (309)
                      |==+|.|  ..|..+|+.+  .+.+|++.|.+++.++.+.++-.....     ...+...    ..........|.|+..
T Consensus         5 Ig~IGlG--~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~-----~~~a~~~----~~~~~~~~~~~~ii~~   73 (176)
T d2pgda2           5 IALIGLA--VMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTK-----VLGAHSL----EEMVSKLKKPRRIILL   73 (176)
T ss_dssp             EEEECCS--HHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSS-----CEECSSH----HHHHHHBCSSCEEEEC
T ss_pred             EEEEeEh--HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccccc-----ccchhhh----hhhhhhhcccceEEEe
Confidence            3335554  4444444332  256899999999888777553211110     0000000    0000012345777663


Q ss_pred             CCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEec
Q 021691          216 DCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIEN  273 (309)
Q Consensus       216 d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~  273 (309)
                        +...+.....+..+...++++.  .++-.++..+....++.+.+.+.|..+.....
T Consensus        74 --~~~~~~v~~v~~~l~~~~~~g~--iiid~sT~~~~~~~~~~~~~~~~g~~~ldapv  127 (176)
T d2pgda2          74 --VKAGQAVDNFIEKLVPLLDIGD--IIIDGGNSEYRDTMRRCRDLKDKGILFVGSGV  127 (176)
T ss_dssp             --SCTTHHHHHHHHHHHHHCCTTC--EEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             --cCchHHHHHHHHHHHhccccCc--EEEecCcchhHHHHHHHHHHHhcCCceecccc
Confidence              3344555667777777787766  55556666677777888888999988765443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=84.01  E-value=1.4  Score=35.84  Aligned_cols=81  Identities=15%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             CCCCeEEEeCCCCCh---hhHHHHHhcCCcEEEEEcCC-HHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-----
Q 021691          133 FRSKRVIELGSGYGL---AGLVIAATTEALEVVISDGN-PQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-----  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~---~~l~la~~~~~~~V~~tD~~-~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-----  203 (309)
                      .+||.+|=-|++.|+   .+..+++.  +.+|+++|.+ ++.++.+...+....-    .++.+...|..+.+.-     
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~   75 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVRAGLAAQHG----VKVLYDGADLSKGEAVRGLVD   75 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCHHHHHHHHHHHHHHHT----SCEEEECCCTTSHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHH
Confidence            478999988887664   23334443  5699999986 6777777766654321    2455555555433210     


Q ss_pred             ---CCCCCccEEEEcCCCC
Q 021691          204 ---YIVDTFDVIVASDCTF  219 (309)
Q Consensus       204 ---~~~~~fDvIi~~d~ly  219 (309)
                         ..-++.|++|.+--+.
T Consensus        76 ~~~~~~G~iDiLVnnAG~~   94 (260)
T d1x1ta1          76 NAVRQMGRIDILVNNAGIQ   94 (260)
T ss_dssp             HHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHhCCCcEEEeecccc
Confidence               0125789988765433

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=83.82  E-value=0.94  Score=33.97  Aligned_cols=82  Identities=9%  Similarity=0.025  Sum_probs=46.2

Q ss_pred             eEEEeCCCC-C-hhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          137 RVIELGSGY-G-LAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       137 ~VLELG~Gt-G-~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      +|.=+|+|. | .++..+.+  .+.+|++.|.+++.++.+++    ++..    ....       ... ..-...|+|+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~~~~~~~a~~----~~~~----~~~~-------~~~-~~~~~~DiIil   63 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQSTCEKAVE----RQLV----DEAG-------QDL-SLLQTAKIIFL   63 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH----TTSC----SEEE-------SCG-GGGTTCSEEEE
T ss_pred             EEEEEeecHHHHHHHHHHHH--CCCEEEEEECCchHHHHHHH----hhcc----ceee-------eec-ccccccccccc
Confidence            455567763 3 23333333  36799999999988777654    2321    0000       010 11246799988


Q ss_pred             cCCCCCcccHHHHHHHHHHHHhcCC
Q 021691          215 SDCTFFKEFHKDLARIIKFLLKKVG  239 (309)
Q Consensus       215 ~d~ly~~~~~~~ll~~l~~lLk~~G  239 (309)
                      +-+   ....+.+++.+...++++.
T Consensus        64 avp---~~~~~~vl~~l~~~l~~~~   85 (165)
T d2f1ka2          64 CTP---IQLILPTLEKLIPHLSPTA   85 (165)
T ss_dssp             CSC---HHHHHHHHHHHGGGSCTTC
T ss_pred             cCc---Hhhhhhhhhhhhhhccccc
Confidence            543   3456667777766666654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=2.5  Score=35.05  Aligned_cols=88  Identities=14%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             cCcCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC----
Q 021691          130 ADMFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP----  203 (309)
Q Consensus       130 ~~~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~----  203 (309)
                      +..++||.+|=-|++.|+ |..+|+.+  .+.+|+++|.+++-++.+.+.+..+.......++.....|..+.+.-    
T Consensus         7 ~g~L~gKvalITGas~GI-G~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   85 (297)
T d1yxma1           7 PGLLQGQVAIVTGGATGI-GKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   85 (297)
T ss_dssp             TTTTTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence            356789999999987763 33333322  25799999999998888877776553322234566666665543210    


Q ss_pred             ----CCCCCccEEEEcCCC
Q 021691          204 ----YIVDTFDVIVASDCT  218 (309)
Q Consensus       204 ----~~~~~fDvIi~~d~l  218 (309)
                          ...+..|++|.+-..
T Consensus        86 ~~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          86 KSTLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHhCCeEEEEeeccc
Confidence                012578999876543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.16  E-value=2.9  Score=33.96  Aligned_cols=78  Identities=17%  Similarity=0.154  Sum_probs=49.2

Q ss_pred             cCCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC------
Q 021691          132 MFRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------  203 (309)
Q Consensus       132 ~~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------  203 (309)
                      .++||.+|=-|++.|+ |..+|+.+  .+.+|+++|.+++-++.+.+.+...      ..+.+...|..+.+.-      
T Consensus         3 rL~gKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~------~~~~~~~~Dv~~~~~v~~~~~~   75 (268)
T d2bgka1           3 RLQDKVAIITGGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP------DVISFVHCDVTKDEDVRNLVDT   75 (268)
T ss_dssp             TTTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT------TTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC------CceEEEEccCCCHHHHHHHHHH
Confidence            3689999999988763 34333322  2579999999998888776665332      2355555665433210      


Q ss_pred             --CCCCCccEEEEcC
Q 021691          204 --YIVDTFDVIVASD  216 (309)
Q Consensus       204 --~~~~~fDvIi~~d  216 (309)
                        ...+..|+++.+-
T Consensus        76 ~~~~~g~iD~lVnnA   90 (268)
T d2bgka1          76 TIAKHGKLDIMFGNV   90 (268)
T ss_dssp             HHHHHSCCCEEEECC
T ss_pred             HHHHcCCcceecccc
Confidence              0125789998754

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.74  E-value=0.69  Score=37.81  Aligned_cols=81  Identities=21%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------  203 (309)
                      ++||++|=-|++.|+ |..+|+.+  .+.+|+++|.+++.++.+.+.+...+.     ++.....|..+.+.-       
T Consensus         9 L~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~-----~~~~~~~Dvs~~~~~~~~~~~~   82 (255)
T d1fmca_           9 LDGKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-----QAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             CTTCEEEETTTTSHH-HHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-----cEEEEEccCCCHHHHHHHHHHH
Confidence            579999988877653 44444332  367999999999999988887776543     455555655433210       


Q ss_pred             -CCCCCccEEEEcCCCC
Q 021691          204 -YIVDTFDVIVASDCTF  219 (309)
Q Consensus       204 -~~~~~fDvIi~~d~ly  219 (309)
                       ..-+..|+++.+--..
T Consensus        83 ~~~~g~iDilvnnAG~~   99 (255)
T d1fmca_          83 ISKLGKVDILVNNAGGG   99 (255)
T ss_dssp             HHHHSSCCEEEECCCCC
T ss_pred             HHHcCCCCEeeeCCcCC
Confidence             0125789988865443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=82.62  E-value=2.1  Score=34.73  Aligned_cols=77  Identities=14%  Similarity=0.220  Sum_probs=51.8

Q ss_pred             CCCCeEEEeCCCCCh---hhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC------
Q 021691          133 FRSKRVIELGSGYGL---AGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~---~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------  203 (309)
                      ++||.+|=-|++.|+   ++..+++.  +.+|+++|.+++.++.+.+.+...+.     ++.....|..+.+.-      
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~-----~~~~~~~Dv~~~~~v~~~~~~   75 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREKGV-----EARSYVCDVTSEEAVIGTVDS   75 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTS-----CEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEccCCCHHHHHHHHHH
Confidence            579999988987663   23334443  57999999999999988888776543     456666665543210      


Q ss_pred             --CCCCCccEEEEcC
Q 021691          204 --YIVDTFDVIVASD  216 (309)
Q Consensus       204 --~~~~~fDvIi~~d  216 (309)
                        ..-+..|++|.+-
T Consensus        76 ~~~~~g~iDilVnna   90 (260)
T d1zema1          76 VVRDFGKIDFLFNNA   90 (260)
T ss_dssp             HHHHHSCCCEEEECC
T ss_pred             HHHHhCCCCeehhhh
Confidence              0125789988754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=82.48  E-value=1.3  Score=33.87  Aligned_cols=104  Identities=14%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             HHHHHhh-CcCcCCCCeEEEeCCCC--ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCC
Q 021691          122 LAFFSLS-HADMFRSKRVIELGSGY--GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWN  198 (309)
Q Consensus       122 La~~l~~-~~~~~~g~~VLELG~Gt--G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~  198 (309)
                      -|.+.+. ...+.+|.+||=.|+|.  |...+.+|+..+ .+|++++.+++-++.++..    +..    .  +  ++-.
T Consensus        16 TA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~----Ga~----~--v--i~~~   82 (182)
T d1v3va2          16 TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQI----GFD----A--A--FNYK   82 (182)
T ss_dssp             HHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT----TCS----E--E--EETT
T ss_pred             HHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhh----hhh----h--h--cccc
Confidence            3444544 44667899999888854  677888888876 5999999998877766653    321    1  1  1111


Q ss_pred             CCCC------CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 021691          199 QDDF------PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFS  247 (309)
Q Consensus       199 ~~~~------~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~  247 (309)
                      .++.      ......+|+|+-+  +-     ...++...++|+++|  .++.+.
T Consensus        83 ~~~~~~~~~~~~~~~Gvd~v~D~--vG-----~~~~~~~~~~l~~~G--~~v~~G  128 (182)
T d1v3va2          83 TVNSLEEALKKASPDGYDCYFDN--VG-----GEFLNTVLSQMKDFG--KIAICG  128 (182)
T ss_dssp             SCSCHHHHHHHHCTTCEEEEEES--SC-----HHHHHHHGGGEEEEE--EEEECC
T ss_pred             cccHHHHHHHHhhcCCCceeEEe--cC-----chhhhhhhhhccCCC--eEEeec
Confidence            1111      0123568998763  21     356788899999999  565554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.34  E-value=1.3  Score=33.16  Aligned_cols=116  Identities=14%  Similarity=0.012  Sum_probs=64.8

Q ss_pred             eEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEE
Q 021691          137 RVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVA  214 (309)
Q Consensus       137 ~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~  214 (309)
                      +|-=+|.|  ..|..+|+.+  .+.+|.+.|.++...+.+...    +..      ..       ..........|+|+.
T Consensus         3 kIg~IGlG--~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~----~~~------~~-------~~~~e~~~~~diii~   63 (162)
T d3cuma2           3 QIAFIGLG--HMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA----GAS------AA-------RSARDAVQGADVVIS   63 (162)
T ss_dssp             EEEEECCS--TTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT----TCE------EC-------SSHHHHHTSCSEEEE
T ss_pred             EEEEEEEH--HHHHHHHHHHHHCCCeEEEEECchhhhhhhhhh----hcc------cc-------chhhhhccccCeeee
Confidence            34445555  4444333322  257999999998876665432    221      00       000111245688877


Q ss_pred             cCCCCCcccHHHHHHH---HHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccC
Q 021691          215 SDCTFFKEFHKDLARI---IKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYN  275 (309)
Q Consensus       215 ~d~ly~~~~~~~ll~~---l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~  275 (309)
                      .  +.+......++..   +...++++.  .++-+++..+.+..++.+.+++.|..+.......
T Consensus        64 ~--v~~~~~~~~v~~~~~~~~~~l~~g~--iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~G  123 (162)
T d3cuma2          64 M--LPASQHVEGLYLDDDGLLAHIAPGT--LVLECSTIAPTSARKIHAAARERGLAMLDAPVSG  123 (162)
T ss_dssp             C--CSCHHHHHHHHHSTTCHHHHSCTTC--EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEES
T ss_pred             c--ccchhhHHHHHhccccccccCCCCC--EEEECCCCCHHHHHHHHHHHHHCCCcEEeccccc
Confidence            3  3334444444433   344455554  4455666677888889999999998876554433

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=82.13  E-value=1.4  Score=33.42  Aligned_cols=104  Identities=13%  Similarity=0.064  Sum_probs=63.3

Q ss_pred             HhhCcCcCCCCeEEEeCC-C-CChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCC-CC
Q 021691          126 SLSHADMFRSKRVIELGS-G-YGLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQD-DF  202 (309)
Q Consensus       126 l~~~~~~~~g~~VLELG~-G-tG~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~-~~  202 (309)
                      +..+....++.+||=-|+ | .|..++.+|+..| .+|+++..+++-.+.++..    +.+    .+ ...-++... ..
T Consensus        15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~G-a~Viat~~s~~k~~~~~~l----Gad----~v-i~~~~~~~~~~~   84 (167)
T d1tt7a2          15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQL----GAS----EV-ISREDVYDGTLK   84 (167)
T ss_dssp             HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHHH----TCS----EE-EEHHHHCSSCCC
T ss_pred             HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcC-CceEEEecCHHHHHHHHhh----ccc----ce-Eeccchhchhhh
Confidence            444444556778987775 3 5788888999876 4899999988766666542    331    11 111111111 11


Q ss_pred             CCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEee
Q 021691          203 PYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSP  248 (309)
Q Consensus       203 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~  248 (309)
                      ....+.+|+|+-.  +-     ...+....+.|+++|  .++.+..
T Consensus        85 ~~~~~gvd~vid~--vg-----g~~~~~~~~~l~~~G--~iv~~G~  121 (167)
T d1tt7a2          85 ALSKQQWQGAVDP--VG-----GKQLASLLSKIQYGG--SVAVSGL  121 (167)
T ss_dssp             SSCCCCEEEEEES--CC-----THHHHHHHTTEEEEE--EEEECCC
T ss_pred             cccCCCceEEEec--Cc-----HHHHHHHHHHhccCc--eEEEeec
Confidence            2234678988763  21     346677888899999  5555543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.07  E-value=2  Score=35.12  Aligned_cols=81  Identities=22%  Similarity=0.263  Sum_probs=53.8

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------  203 (309)
                      ++||++|=-|++.|+ |..+|+.+  .+.+|+++|.+++-++.+.+.+...+..  ..++.....|..+.+.-       
T Consensus         3 L~gK~alVTGas~GI-G~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           3 FSNKTVIITGSSNGI-GRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVS--EKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC--GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--CCceEEEEccCCCHHHHHHHHHHH
Confidence            679999999987663 33333322  2579999999999999988888766542  24566777766543210       


Q ss_pred             -CCCCCccEEEEcC
Q 021691          204 -YIVDTFDVIVASD  216 (309)
Q Consensus       204 -~~~~~fDvIi~~d  216 (309)
                       ..-+..|+++.+-
T Consensus        80 ~~~~g~iDilvnnA   93 (272)
T d1xkqa_          80 LKQFGKIDVLVNNA   93 (272)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHhCCceEEEeCC
Confidence             0125789998764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=80.96  E-value=2.9  Score=33.86  Aligned_cols=80  Identities=15%  Similarity=0.175  Sum_probs=53.4

Q ss_pred             CCCCeEEEeCCCCCh---hhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC------
Q 021691          133 FRSKRVIELGSGYGL---AGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP------  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~---~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~------  203 (309)
                      +.||.+|=-|++.|+   ++..+++.  +.+|+++|.+++.++.+...+...+.   ..++.....|..+.+.-      
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~   76 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETAP---DAEVLTTVADVSDEAQVEAYVTA   76 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHCT---TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhCC---CCeEEEEeccCCCHHHHHHHHHH
Confidence            578999999988763   23444443  67999999999999888777766543   23566666666543210      


Q ss_pred             --CCCCCccEEEEcCC
Q 021691          204 --YIVDTFDVIVASDC  217 (309)
Q Consensus       204 --~~~~~fDvIi~~d~  217 (309)
                        ..-++.|++|.+--
T Consensus        77 ~~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          77 TTERFGRIDGFFNNAG   92 (258)
T ss_dssp             HHHHHSCCSEEEECCC
T ss_pred             HHHHhCCCCEEEECCc
Confidence              01257899988653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.95  E-value=2.1  Score=34.98  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=54.3

Q ss_pred             CCCCeEEEeCCCCChhhHHHHHhc--CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCC-------
Q 021691          133 FRSKRVIELGSGYGLAGLVIAATT--EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFP-------  203 (309)
Q Consensus       133 ~~g~~VLELG~GtG~~~l~la~~~--~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~-------  203 (309)
                      ++||++|=-|++.|+ |..+|+.+  .+.+|+++|.+++-++.+.+.+...+..  ..++.....|..+...-       
T Consensus         2 L~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           2 FSGKSVIITGSSNGI-GRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP--AEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             CTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcceEEEEeeCCCHHHHHHHHHHH
Confidence            579999999988763 33333322  2579999999999999998888776542  23566667766543210       


Q ss_pred             -CCCCCccEEEEcC
Q 021691          204 -YIVDTFDVIVASD  216 (309)
Q Consensus       204 -~~~~~fDvIi~~d  216 (309)
                       ..-++.|+++.+-
T Consensus        79 ~~~~G~iDilVnnA   92 (274)
T d1xhla_          79 LAKFGKIDILVNNA   92 (274)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHcCCceEEEeec
Confidence             0125789999864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=80.76  E-value=2.7  Score=31.64  Aligned_cols=117  Identities=12%  Similarity=0.090  Sum_probs=63.0

Q ss_pred             CcCCCCeEEEeCCCC-ChhhHHHHHhcCCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCc
Q 021691          131 DMFRSKRVIELGSGY-GLAGLVIAATTEALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTF  209 (309)
Q Consensus       131 ~~~~g~~VLELG~Gt-G~~~l~la~~~~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~f  209 (309)
                      -..+|++||=||||- +...++.....+ .+++.+..+++-.+.+.+.+...+      .+.  ...|...    ....+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g-~~i~I~nRt~~ka~~l~~~~~~~~------~~~--~~~~~~~----~~~~~   80 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNRTVSRAEELAKLFAHTG------SIQ--ALSMDEL----EGHEF   80 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHHTGGGS------SEE--ECCSGGG----TTCCC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccc-eEEEeccchHHHHHHHHHHHhhcc------ccc--ccccccc----ccccc
Confidence            456899999999984 433333233344 479999998876665555433222      222  2333322    12468


Q ss_pred             cEEEEcCCCCCcccHHHHHHHHHHHHhcCCCeEEEEEeecCCchHHHHHHHHHhCCCe
Q 021691          210 DVIVASDCTFFKEFHKDLARIIKFLLKKVGPSEALFFSPKRGDSLDKFLEEIEGNHLH  267 (309)
Q Consensus       210 DvIi~~d~ly~~~~~~~ll~~l~~lLk~~G~~~~ii~~~~r~~~~~~f~~~~~~~G~~  267 (309)
                      |+||.+-++-...+...+   -...++++.    ++++.......-.|++.+++.|..
T Consensus        81 dliIN~Tp~G~~~~~~~~---~~~~~~~~~----~v~D~vY~P~~T~ll~~A~~~G~~  131 (170)
T d1nyta1          81 DLIINATSSGISGDIPAI---PSSLIHPGI----YCYDMFYQKGKTPFLAWCEQRGSK  131 (170)
T ss_dssp             SEEEECCSCGGGTCCCCC---CGGGCCTTC----EEEESCCCSSCCHHHHHHHHTTCC
T ss_pred             ceeecccccCcccCCCCC---cHHHhccCc----EEEEeecCCCCCHHHHHHHHcCCC
Confidence            999987655432221110   012243333    333432211123688899999865

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.65  E-value=4.6  Score=28.96  Aligned_cols=110  Identities=15%  Similarity=0.056  Sum_probs=60.2

Q ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhccCCCCCCceEEEEeeCCCCCCCCCCCCccEEEEcCCCCCcccHHHHHHHHHHHHh
Q 021691          157 EALEVVISDGNPQVVDYIQRNVDANSGAFGGTTVKSMTLHWNQDDFPYIVDTFDVIVASDCTFFKEFHKDLARIIKFLLK  236 (309)
Q Consensus       157 ~~~~V~~tD~~~~~l~~~~~n~~~n~~~~~~~~v~~~~l~w~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~lLk  236 (309)
                      .+.+|..+|-++.....++.-+...|..     +  ....-+.+........||+|++ |.---.-+=-.+++.+++...
T Consensus         6 ~g~rILvVDD~~~~~~~l~~~L~~~G~~-----v--~~a~~g~eal~~l~~~~dlill-D~~mP~~dG~el~~~ir~~~~   77 (134)
T d1dcfa_           6 TGLKVLVMDENGVSRMVTKGLLVHLGCE-----V--TTVSSNEECLRVVSHEHKVVFM-DVCMPGVENYQIALRIHEKFT   77 (134)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHHTTCE-----E--EEESSHHHHHHHCCTTCSEEEE-ECCSSTTTTTHHHHHHHHHHC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCE-----E--EEECCHHHHHHHhhcCCCeEEE-EeccCCCchHHHHHHHHHhcc
Confidence            4579999999999988898888887762     2  1111111111112357999998 433222222456677776543


Q ss_pred             cCC-C-eEEEEEeecCCchHHHHHHHHHhCCCeEEEEeccCch
Q 021691          237 KVG-P-SEALFFSPKRGDSLDKFLEEIEGNHLHFSIIENYNAE  277 (309)
Q Consensus       237 ~~G-~-~~~ii~~~~r~~~~~~f~~~~~~~G~~~~~~~~~~~~  277 (309)
                      ... . ..+++.+... .  ..-...+.+.|+..-....++..
T Consensus        78 ~~~~~~~~ii~lT~~~-~--~~~~~~~~~~G~~~~l~KP~~~~  117 (134)
T d1dcfa_          78 KQRHQRPLLVALSGNT-D--KSTKEKCMSFGLDGVLLKPVSLD  117 (134)
T ss_dssp             -CCSCCCEEEEEESCC-S--HHHHHHHHHTTCCEEEESSCCHH
T ss_pred             cccCCCCeEEEEeCCC-C--HHHHHHHHHcCCCEEEECCCCHH
Confidence            322 1 1233333222 1  23345666788876666655543