Citrus Sinensis ID: 021709

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRRFYA
Secondary Structure (PSIPRED)
cccccccEEEEEccccEEEEEEEHHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccEEccccccEEEEcccccHHHHHHHHHHccccEEEEEEccEEEEEEEcHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcccccEEEEEcHHHHHHHHHHcccccccccHHHHccccccEEccccHHHHHHHHHHHccccccEEEccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHcccccccEEEccccHHHHHHHHHHHccccEEEEEEccEEEEEEccHHHHHHHHHcccccccccEEEEccccccccccccHHHHHHHHHHccccccccEEcccccEEEEEHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELnleetpvskvmtrnptfvlsDTLAVEALQKMVQGkfrhlpvvengevIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEkhwgtsisgpnTFIETLRERmfrpslstiipekskvvtisptDTVLMATKKMLELRLSSAvvtvenkprgiltsKDILMRVISqnlpadstlvekvmtpnpecatidtpivDALHimhdgkflhlpvvdrdgdvvdVVDVIHITHAAVATvgntagsnnEAASTMMQKFWDSamalspnddeednrrfya
Flexible Loop (DISEMBL)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARelnleetpvskvmtrnpTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEgvekhwgtsisgpnTFIETLRERMFRPslstiipekskvvtisptDTVLMATKKMLELRLssavvtvenkprgiltskdiLMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAavatvgntagSNNEAASTMMQKFWDSAMalspnddeednrrfya
Low Complexity Region (SEG)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERaaekgkaiaaavegvekHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPvvdrdgdvvdvvdvIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRRFYA
Disordered region (IsUnstruct)
*****VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT************************************
Disordered Region (DISOPRED)
***RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAA*****************************TL******PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA********************KFWDSAM****************
Disordered Region (DISEMBL)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALS*************
Disordered Region (DISPRO)
****RVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN*************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRRFYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
P0DH79	548	CBS domain-containing pro	yes	no	0.987	0.554	0.799	1e-142
Q0WLC7	548	CBS domain-containing pro	yes	no	0.987	0.554	0.799	1e-142
Q9FMV3	543	CBS domain-containing pro	no	no	0.987	0.559	0.799	1e-129
Q9LF97	556	CBS domain-containing pro	no	no	1.0	0.553	0.675	1e-122
Q9SJQ5	536	CBS domain-containing pro	no	no	0.961	0.552	0.695	1e-117
O13965	730	Meiotically up-regulated	yes	no	0.857	0.361	0.294	4e-32
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.337	0.634	0.370	4e-08
P50100	196	Uncharacterized protein M	no	no	0.386	0.607	0.292	1e-07
Q58069	194	Uncharacterized protein M	yes	no	0.298	0.474	0.343	8e-06
Q9LEV3	206	CBS domain-containing pro	no	no	0.340	0.509	0.288	8e-05

>sp|P0DH79|Y5064_ARATH CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1

 Score =  504 bits (1299), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/304 (79%), Positives = 277/304 (91%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTD+DIAT+VIA++LNLEETPVSKVMT+NP FVLSDT+A
Sbjct: 87  MAARRVDALLLTDSNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTKNPVFVLSDTIA 146

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER+ EKGKAIAAAVEGVEK+
Sbjct: 147 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERSVEKGKAIAAAVEGVEKN 206

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSI+GPNTF+ETLRER+F+PSLSTIIPE +KV+ +   +TVL  T KM+E + S+A+V
Sbjct: 207 WGTSIAGPNTFMETLRERIFKPSLSTIIPENTKVLKVGLDETVLGVTMKMVEYQSSAAMV 266

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VENK  GILTSKDILMRVISQNLP ++T VEKVMTPNPE AT+D  IV+ALHIMH+GKF
Sbjct: 267 MVENKLVGILTSKDILMRVISQNLPQETTTVEKVMTPNPESATVDMAIVEALHIMHNGKF 326

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+D+DGDVV V+DVIHITHAAV T G+TAG NNE A++MMQKFWDSAMALSPN+D 
Sbjct: 327 LHLPVLDKDGDVVAVIDVIHITHAAVTTAGSTAGINNETANSMMQKFWDSAMALSPNEDG 386

Query: 301 EDNR 304
           ++ R
Sbjct: 387 DETR 390

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana GN=CBSCBSPB4 PE=2 SV=2

 Score =  504 bits (1299), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/304 (79%), Positives = 277/304 (91%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTD+DIAT+VIA++LNLEETPVSKVMT+NP FVLSDT+A
Sbjct: 87  MAARRVDALLLTDSNALLCGILTDRDIATKVIAKQLNLEETPVSKVMTKNPVFVLSDTIA 146

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER+ EKGKAIAAAVEGVEK+
Sbjct: 147 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERSVEKGKAIAAAVEGVEKN 206

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSI+GPNTF+ETLRER+F+PSLSTIIPE +KV+ +   +TVL  T KM+E + S+A+V
Sbjct: 207 WGTSIAGPNTFMETLRERIFKPSLSTIIPENTKVLKVGLDETVLGVTMKMVEYQSSAAMV 266

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VENK  GILTSKDILMRVISQNLP ++T VEKVMTPNPE AT+D  IV+ALHIMH+GKF
Sbjct: 267 MVENKLVGILTSKDILMRVISQNLPQETTTVEKVMTPNPESATVDMAIVEALHIMHNGKF 326

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+D+DGDVV V+DVIHITHAAV T G+TAG NNE A++MMQKFWDSAMALSPN+D 
Sbjct: 327 LHLPVLDKDGDVVAVIDVIHITHAAVTTAGSTAGINNETANSMMQKFWDSAMALSPNEDG 386

Query: 301 EDNR 304
           ++ R
Sbjct: 387 DETR 390

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMV3|Y5349_ARATH CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana GN=CBSCBSPB1 PE=1 SV=1

 Score =  459 bits (1182), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/304 (79%), Positives = 273/304 (89%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA+RRVDALLLTDSN +LCGILTDKDIATRVI++ELN+EETPVSKVMT+NP FVLS+TLA
Sbjct: 79  MASRRVDALLLTDSNEMLCGILTDKDIATRVISQELNVEETPVSKVMTKNPMFVLSETLA 138

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 
Sbjct: 139 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKS 198

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGT+ S PNTFIETLR+RMFRPSLSTIIP+ +KV+ +SPTDTVL   KKM+E + S AVV
Sbjct: 199 WGTNTSVPNTFIETLRDRMFRPSLSTIIPDDTKVLKVSPTDTVLTVAKKMVEFQSSCAVV 258

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +E+K RGI TSKDILMRV+++NLP   TLVE VMT NPE   +DTPIV+ALHIMH+GKF
Sbjct: 259 IIEDKLRGIFTSKDILMRVVAENLPPSETLVETVMTQNPESTIVDTPIVEALHIMHEGKF 318

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV D++GDVV VVDVIH+THAAVAT G TAG  NEA +TMMQKFWDSAMALSPN+D+
Sbjct: 319 LHLPVTDKEGDVVAVVDVIHVTHAAVATAGTTAGIGNEATNTMMQKFWDSAMALSPNEDD 378

Query: 301 EDNR 304
           ED+R
Sbjct: 379 EDSR 382

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1

 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/308 (67%), Positives = 254/308 (82%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA LLTDS+ALL GI+TDKD+ATRVIA  L  ++T VSKVMTRNP FV SD+LA
Sbjct: 88  MAARRVDACLLTDSSALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMTRNPIFVTSDSLA 147

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           +EALQKMVQGKFRHLPVVENGEVIALLDI KCLYDAI+RME+AAE+G A+AAAVEGVEK 
Sbjct: 148 LEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSALAAAVEGVEKQ 207

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WG+  S P  FIETLRERMF+P+LSTII + SKV  ++P+D V +A K+M +LR++S ++
Sbjct: 208 WGSGYSAPYAFIETLRERMFKPALSTIITDNSKVALVAPSDPVSVAAKRMRDLRVNSVII 267

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           +  NK  GILTSKDILMRV++QNL  + TLVEKVMTPNPECA+++T I+DALH MHDGKF
Sbjct: 268 STGNKISGILTSKDILMRVVAQNLSPELTLVEKVMTPNPECASLETTILDALHTMHDGKF 327

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLP++D+DG     VDV+ ITHAA++ V N++G+ N+ A+TMMQKFWDSA+AL P DD 
Sbjct: 328 LHLPIIDKDGSAAACVDVLQITHAAISMVENSSGAVNDMANTMMQKFWDSALALEPPDDS 387

Query: 301 EDNRRFYA 308
           +      A
Sbjct: 388 DTQSEMSA 395

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJQ5|Y2650_ARATH CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana GN=CBSCBSPB2 PE=2 SV=1

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/302 (69%), Positives = 252/302 (83%), Gaps = 6/302 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDS+ALL GI+TDKDIATRVIA  L  E T VSKVMTRNP FV SD+LA
Sbjct: 86  MAARRVDAVLLTDSSALLSGIVTDKDIATRVIAEGLRPEHTLVSKVMTRNPIFVTSDSLA 145

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           +EALQKMVQGKFRHLPVVENGEVIALLDI KCLYDAI+RME+AAE+G A+A AVE  E+H
Sbjct: 146 IEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSALATAVE--ERH 203

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WG   SG   FI+TLRERMF+P+LSTI+ E +KV  +S +D V +A+KKM +LR++S ++
Sbjct: 204 WG---SGNFAFIDTLRERMFKPALSTIVTENTKVALVSASDPVFVASKKMRDLRVNSVII 260

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            V NK  GILTSKDILMRV++QNL  + TLVEKVMTPNPECA+I+T I+DALHIMHDGKF
Sbjct: 261 AVGNKIHGILTSKDILMRVVAQNLSPELTLVEKVMTPNPECASIETTILDALHIMHDGKF 320

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATV-GNTAGSNNEAASTMMQKFWDSAMALSPNDD 299
           LHLPV D+DG  V  +DV+ ITHAA++TV  N++G+ N+ A+TMMQKFWDSA+AL P +D
Sbjct: 321 LHLPVFDKDGFAVACLDVLQITHAAISTVENNSSGAVNDMANTMMQKFWDSALALEPPED 380

Query: 300 EE 301
            E
Sbjct: 381 YE 382

Arabidopsis thaliana (taxid: 3702)

>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug70 PE=1 SV=1

 Score =  138 bits (348), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 154/289 (53%), Gaps = 25/289 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA+R + +L+ D +  L GI+T  DIATR +   LN  +T ++ +M+ +P  + SDT  
Sbjct: 89  MAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAGLNARQTLIADIMSTSPLCITSDTRF 148

Query: 61  VEALQKMVQGKFRHLPVV----------ENGEVIALLDIAKCLYDAIARMERAAEKGKAI 110
            +AL  M++ KFRHLPVV          + G+VI ++++  CL + + R+ R  E  + +
Sbjct: 149 DDALLLMIEHKFRHLPVVSDGGPDGSAGDEGDVIGIINMRACLREPLNRIARQQEAAQKL 208

Query: 111 AAAVEGVEKHW----------GTSISGPNT-----FIETLRERMFRPSLSTIIPEKSKVV 155
             A+EG ++             +S+SG +      ++E+L+++     + ++I    +  
Sbjct: 209 VEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLEYVESLKKKASGLEIMSLIDSSEEPF 268

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
            +    TV  AT+ M    +S+ +V       G+ T+ D+++RV++  L    + V +VM
Sbjct: 269 LVGTRTTVAEATESMARSGVSAVLVMDNGAVSGVFTAHDVVLRVLAAGLDPYRSSVIRVM 328

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           TP+P+CA     +  AL  M +GKF +LPVVD    ++ ++ + H+  A
Sbjct: 329 TPHPDCALASLRVSTALERMIEGKFSNLPVVDESDAIIGMLSLFHLATA 377

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 4/108 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTL 210
           +KV  + P  T+  A K+M E  L S VV   +N+  GI+T +DI+    + N   DS  
Sbjct: 11  TKVYVVKPNVTIAEAAKEMKEHNLGSLVVIDSQNRVVGIITERDIVKA--ASNRDIDSP- 67

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDV 258
           VEK MT + +  T DT + DAL IM +  F HLP++  +G +  +V +
Sbjct: 68  VEKYMTKDVKGVTEDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSI 115

Acidianus ambivalens (taxid: 2283)

>sp|P50100|Y525_METKA Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0525 PE=4 SV=2

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADST 209
           +  V+T SPT+T +    KM E  + S V+  E ++P GI+T +D++++V+SQ    D  
Sbjct: 11  RRDVITGSPTETAVEIAYKMREHGIGSVVIVNEKDEPIGIITERDLVIKVVSQGKNPDEV 70

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAV 266
           +   +M+        D  + +A+ +M D     LP+VD +G ++ +V   D++ +    V
Sbjct: 71  IARDIMSQPVITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQVEPYLV 130

Query: 267 ATV 269
           AT+
Sbjct: 131 ATI 133

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0653 PE=4 SV=1

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 170 MLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIV 229
           M E  + + V+   NKP GI+T +DI+ RV+S+NL     L E+VM+        +  I 
Sbjct: 33  MTENNIGAVVIVENNKPIGIVTERDIVKRVVSKNLKPKDVLAEEVMSKKIITIPQNASIT 92

Query: 230 DALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 262
           +A  IM       LPVV +DG++V +V   D++ ++
Sbjct: 93  EAAKIMATHGIKRLPVV-KDGELVGIVTQSDIVRVS 127

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 161 DTVLMATKKMLELRLSSAVVTVENKPR---GILTSKDILMRVISQNLPADSTLVEKVMTP 217
           DTV  A K M +  + + VV    + +   GI+T +D L ++I Q   + ST V  +MT 
Sbjct: 79  DTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 138

Query: 218 NPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
             +  T+  +T ++ A+ +M D +  H+PV+ +D  ++ +V +  +  A V
Sbjct: 139 ENKLITVTPETKVLRAMQLMTDNRIRHIPVI-KDKGMIGMVSIGDVVRAVV 188

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
255540203	545	conserved hypothetical protein [Ricinus	0.987	0.557	0.904	1e-158
224122050	535	predicted protein [Populus trichocarpa]	0.993	0.571	0.879	1e-156
118484915	541	unknown [Populus trichocarpa]	0.987	0.561	0.884	1e-156
449440540	540	PREDICTED: CBS domain-containing protein	0.987	0.562	0.894	1e-156
225456355	546	PREDICTED: CBS domain-containing protein	0.977	0.551	0.893	1e-154
359491097	541	PREDICTED: CBS domain-containing protein	0.977	0.556	0.893	1e-154
125528914	497	hypothetical protein OsI_04983 [Oryza sa	0.987	0.611	0.845	1e-150
357126564	550	PREDICTED: CBS domain-containing protein	0.987	0.552	0.825	1e-148
326509897	550	predicted protein [Hordeum vulgare subsp	0.987	0.552	0.822	1e-147
147863576	569	hypothetical protein VITISV_019408 [Viti	0.970	0.525	0.806	1e-147

>gi|255540203|ref|XP_002511166.1| conserved hypothetical protein [Ricinus communis] gi|223550281|gb|EEF51768.1| conserved hypothetical protein [Ricinus communis]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/304 (90%), Positives = 289/304 (95%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 79  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPVFVLSDTLA 138

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 139 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 198

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGT+ SGPNTFIETLRERMFRPSLSTI+PE SKVVT+ PT+TVL  TKKMLE R SSAVV
Sbjct: 199 WGTTFSGPNTFIETLRERMFRPSLSTILPENSKVVTVLPTETVLAVTKKMLESRSSSAVV 258

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            V+ KPRGILTSKDILMRVI+QNLP+DSTL EKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 259 IVDQKPRGILTSKDILMRVIAQNLPSDSTLAEKVMTPNPECATIDTPIVDALHTMHDGKF 318

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+DRDG+VV VVDVIHITHAAVATVG+TAG NNEAASTMMQKFWDSAMALSPN+D+
Sbjct: 319 LHLPVLDRDGNVVAVVDVIHITHAAVATVGSTAGVNNEAASTMMQKFWDSAMALSPNEDD 378

Query: 301 EDNR 304
           +D R
Sbjct: 379 DDTR 382

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122050|ref|XP_002318739.1| predicted protein [Populus trichocarpa] gi|222859412|gb|EEE96959.1| predicted protein [Populus trichocarpa]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/306 (87%), Positives = 287/306 (93%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKD+A+RVIA E+NLEETPVSKVMTRNP FVLSDTLA
Sbjct: 64  MAARRVDALLLTDSNALLCGILTDKDLASRVIAPEVNLEETPVSKVMTRNPVFVLSDTLA 123

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 124 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 183

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSIS PNTFIETLRERMFRP+LSTIIPE SKVVT+SP++TVL+ TKKMLE R   AVV
Sbjct: 184 WGTSISVPNTFIETLRERMFRPALSTIIPENSKVVTVSPSETVLVVTKKMLESRSGCAVV 243

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           TV+ KPRGI TSKDILMRVI+QNLP DSTLVEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 244 TVDEKPRGIFTSKDILMRVIAQNLPPDSTLVEKVMTPNPECATIDTPIVDALHTMHDGKF 303

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPVVDRDG++V V+DVIHITHAAVATVGN  G+NNE ASTMMQKFWDSAMA+SPNDDE
Sbjct: 304 LHLPVVDRDGNIVAVIDVIHITHAAVATVGNATGANNETASTMMQKFWDSAMAMSPNDDE 363

Query: 301 EDNRRF 306
           ++ RR 
Sbjct: 364 DETRRL 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484915|gb|ABK94323.1| unknown [Populus trichocarpa]

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/304 (88%), Positives = 287/304 (94%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKD+A+RVIA E+NLEETPVSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDLASRVIAPEVNLEETPVSKVMTRNPVFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTSIS PNTFIETLRERMFRP+LSTIIPE SKVVT+SP++TVL+ TKKMLE R   AVV
Sbjct: 196 WGTSISVPNTFIETLRERMFRPALSTIIPENSKVVTVSPSETVLVVTKKMLESRSGCAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           TV+ KPRGI TSKDILMRVI+QNLP DSTLVEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 256 TVDEKPRGIFTSKDILMRVIAQNLPPDSTLVEKVMTPNPECATIDTPIVDALHTMHDGKF 315

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPVVDRDG++V V+DVIHITHAAVATVGNT G+NNE ASTMMQKFWDSAMA+SPNDDE
Sbjct: 316 LHLPVVDRDGNIVAVIDVIHITHAAVATVGNTTGANNETASTMMQKFWDSAMAMSPNDDE 375

Query: 301 EDNR 304
           ++ R
Sbjct: 376 DETR 379

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440540|ref|XP_004138042.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cucumis sativus] gi|449520507|ref|XP_004167275.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cucumis sativus]

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/304 (89%), Positives = 290/304 (95%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIA  +NLEET VSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDIATRVIACGINLEETSVSKVMTRNPVFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKS 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGPNTFIETLRERMFRPSLSTIIPE  K+VT+ PT+TVLMATKKMLELR+SSAVV
Sbjct: 196 WGTSVSGPNTFIETLRERMFRPSLSTIIPENLKIVTVPPTETVLMATKKMLELRVSSAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           TV++KP+GILTSKDILMR+I+QNLP DSTLVEKVMTPNPECA+IDTPIVDALH MHDGKF
Sbjct: 256 TVDSKPQGILTSKDILMRLIAQNLPPDSTLVEKVMTPNPECASIDTPIVDALHTMHDGKF 315

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPVVDRDG+VV VVDVIHITHAAVATVGNT+G  NEAAS+MMQKFWDSAMALSPNDD+
Sbjct: 316 LHLPVVDRDGNVVAVVDVIHITHAAVATVGNTSGVGNEAASSMMQKFWDSAMALSPNDDD 375

Query: 301 EDNR 304
           ++ R
Sbjct: 376 DELR 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456355|ref|XP_002283958.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 1 [Vitis vinifera]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/301 (89%), Positives = 283/301 (94%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 81  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLA 140

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 141 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 200

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV
Sbjct: 201 WGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVV 260

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VEN+P+GILTSKDILMRVI+QNL  +ST VEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 261 AVENRPKGILTSKDILMRVIAQNLHPESTPVEKVMTPNPECATIDTPIVDALHTMHDGKF 320

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+DRDG VV V DVIHITHAAVATVG  AG NNEAAS++MQKFWDSAMAL  +DDE
Sbjct: 321 LHLPVIDRDGGVVAVADVIHITHAAVATVGGNAGVNNEAASSLMQKFWDSAMALGTDDDE 380

Query: 301 E 301
           E
Sbjct: 381 E 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491097|ref|XP_003634219.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 2 [Vitis vinifera] gi|297734436|emb|CBI15683.3| unnamed protein product [Vitis vinifera]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/301 (89%), Positives = 283/301 (94%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV
Sbjct: 196 WGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VEN+P+GILTSKDILMRVI+QNL  +ST VEKVMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 256 AVENRPKGILTSKDILMRVIAQNLHPESTPVEKVMTPNPECATIDTPIVDALHTMHDGKF 315

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+DRDG VV V DVIHITHAAVATVG  AG NNEAAS++MQKFWDSAMAL  +DDE
Sbjct: 316 LHLPVIDRDGGVVAVADVIHITHAAVATVGGNAGVNNEAASSLMQKFWDSAMALGTDDDE 375

Query: 301 E 301
           E
Sbjct: 376 E 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528914|gb|EAY77028.1| hypothetical protein OsI_04983 [Oryza sativa Indica Group] gi|125573153|gb|EAZ14668.1| hypothetical protein OsJ_04591 [Oryza sativa Japonica Group]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/304 (84%), Positives = 284/304 (93%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDSNALLCGILTDKDI TRVIAREL LEETPVSKVMTRNP FVLSDTLA
Sbjct: 31  MAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFVLSDTLA 90

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH
Sbjct: 91  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 150

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WG S+SGPNTFIETLRERMFRPSLSTII E SKVVT++PTDTVL A+KKMLE+++SSAVV
Sbjct: 151 WGASVSGPNTFIETLRERMFRPSLSTIISENSKVVTVAPTDTVLTASKKMLEVKVSSAVV 210

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +ENKP GILTS+DILMRVI+QNLP +ST VEKVMT  PECAT+DTPI+DALH MHDGKF
Sbjct: 211 AIENKPGGILTSRDILMRVIAQNLPPESTTVEKVMTQTPECATVDTPILDALHTMHDGKF 270

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+D+DG+VV VVDV+HITHAA+ATVGN+AGS +EA S MMQ+FWDSAM++ P DD+
Sbjct: 271 LHLPVLDKDGNVVTVVDVLHITHAAIATVGNSAGSGSEATSAMMQRFWDSAMSIGPLDDD 330

Query: 301 EDNR 304
           +D+R
Sbjct: 331 DDSR 334

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126564|ref|XP_003564957.1| PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Brachypodium distachyon]

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/304 (82%), Positives = 282/304 (92%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDSNALLCGILTDKDI TRVIAREL LE+TPVSKVMTRNP FVLSDTLA
Sbjct: 85  MAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEDTPVSKVMTRNPLFVLSDTLA 144

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH
Sbjct: 145 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 204

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGT++SGPNTF+ETLRERMFRPSLSTII E SKVVT++PTDTVL A+KKMLEL++SSAVV
Sbjct: 205 WGTAVSGPNTFVETLRERMFRPSLSTIISENSKVVTVAPTDTVLTASKKMLELKVSSAVV 264

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +ENKP GILTS+DILMRVI+QNLP +ST VEKVMT +PECAT DTPI++ALH MHDGKF
Sbjct: 265 AIENKPGGILTSRDILMRVIAQNLPPESTTVEKVMTQSPECATTDTPILEALHTMHDGKF 324

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+D DG+VV V+DV+HITHAA+ATVGN+  + +EA S+MMQ+FWDSAM+  P DD+
Sbjct: 325 LHLPVLDSDGNVVTVIDVLHITHAAIATVGNSGAAGSEATSSMMQRFWDSAMSSGPLDDD 384

Query: 301 EDNR 304
           +D+R
Sbjct: 385 DDSR 388

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326509897|dbj|BAJ87164.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/304 (82%), Positives = 280/304 (92%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDA+LLTDSNALLCGILTDKDI TRVIAREL LEETPVSKVMTRNP FVL DTLA
Sbjct: 85  MAARRVDAVLLTDSNALLCGILTDKDITTRVIARELKLEETPVSKVMTRNPLFVLGDTLA 144

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVV+NGEVIALLDIAKCLYDAIARMERAAEKG+AIAAAVEGVEKH
Sbjct: 145 VEALQKMVQGKFRHLPVVDNGEVIALLDIAKCLYDAIARMERAAEKGRAIAAAVEGVEKH 204

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGPNTF+ETLRERMFRPSL+TII E SKV T++PTDTVL A+KKMLEL++SSAVV
Sbjct: 205 WGTSVSGPNTFVETLRERMFRPSLATIISENSKVATVAPTDTVLTASKKMLELKVSSAVV 264

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            +ENKP GILTS+DILMRVI+QNLP +ST V KVMT +PECATIDTPI++ALH MHDGKF
Sbjct: 265 AIENKPGGILTSRDILMRVIAQNLPPESTTVGKVMTQSPECATIDTPILEALHTMHDGKF 324

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
           LHLPV+DRDG VV VVDV+HITHAA+ATVGN+  + +EA S+MMQ+FWDSAM+  P DD+
Sbjct: 325 LHLPVLDRDGSVVTVVDVLHITHAAIATVGNSGATGSEATSSMMQRFWDSAMSSGPLDDD 384

Query: 301 EDNR 304
           +D+R
Sbjct: 385 DDSR 388

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863576|emb|CAN79772.1| hypothetical protein VITISV_019408 [Vitis vinifera]

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/331 (80%), Positives = 281/331 (84%), Gaps = 32/331 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP FVLSDTLA
Sbjct: 76  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLA 135

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120
           VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK+
Sbjct: 136 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKN 195

Query: 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           WGTS+SGP+TFIETLRERMFRP+LSTIIPE SKVVT+SPTDTVL A KKMLEL+LS AVV
Sbjct: 196 WGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVV 255

Query: 181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
            VEN+P+GILTSKDILMRVI+QNL  +ST V  VMTPNPECATIDTPIVDALH MHDGKF
Sbjct: 256 AVENRPKGILTSKDILMRVIAQNLHPESTPV--VMTPNPECATIDTPIVDALHTMHDGKF 313

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAVAT------------------------------VG 270
           LHLPV+DRDG VV V DVIHITHAAVAT                              VG
Sbjct: 314 LHLPVIDRDGGVVAVADVIHITHAAVATVKLCLSKCCSSQQQAAKELSCFQCFIDRMQVG 373

Query: 271 NTAGSNNEAASTMMQKFWDSAMALSPNDDEE 301
             AG NNEAAS++MQKFWDSAMAL  +DDEE
Sbjct: 374 GNAGVNNEAASSLMQKFWDSAMALGTDDDEE 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2167331	543	AT5G63490 "AT5G63490" [Arabido	0.987	0.559	0.710	6.8e-111
ASPGD|ASPL0000033419	666	AN5716 [Emericella nidulans (t	0.922	0.426	0.347	2.4e-38
CGD|CAL0003543	605	orf19.5238 [Candida albicans (	0.935	0.476	0.304	1.4e-29
POMBASE|SPAC24C9.05c	730	mug70 "conserved protein Mug20	0.331	0.139	0.366	2e-23
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.311	0.657	0.333	3.6e-09
UNIPROTKB|Q5LRC8	144	SPO2201 "CBS domain protein" [	0.327	0.701	0.295	4.7e-09
TIGR_CMR|SPO_2201	144	SPO_2201 "CBS domain protein"	0.327	0.701	0.295	4.7e-09
UNIPROTKB|Q5LLL6	174	Q5LLL6 "CBS domain protein" [R	0.314	0.557	0.323	1e-08
TIGR_CMR|SPO_A0034	174	SPO_A0034 "CBS domain protein"	0.314	0.557	0.323	1e-08
UNIPROTKB|Q0BYV1	144	HNE_2660 "CBS domain protein"	0.318	0.680	0.295	1e-07

TAIR|locus:2167331 AT5G63490 "AT5G63490" [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 216/304 (71%), Positives = 244/304 (80%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MA+RRVDALLLTDSN +LCGILTDKDIATRVI++ELN+EETPVSKVMT+NP FVLS+TLA
Sbjct:    79 MASRRVDALLLTDSNEMLCGILTDKDIATRVISQELNVEETPVSKVMTKNPMFVLSETLA 138

Query:    61 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXXH 120
             VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER                  
Sbjct:   139 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKS 198

Query:   121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV 180
             WGT+ S PNTFIETLR+RMFRPSLSTIIP+ +KV+ +SPTDTVL   KKM+E + S AVV
Sbjct:   199 WGTNTSVPNTFIETLRDRMFRPSLSTIIPDDTKVLKVSPTDTVLTVAKKMVEFQSSCAVV 258

Query:   181 TVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
              +E+K RGI TSKDILMRV+++NLP   TLVE VMT NPE   +DTPIV+ALHIMH+GKF
Sbjct:   259 IIEDKLRGIFTSKDILMRVVAENLPPSETLVETVMTQNPESTIVDTPIVEALHIMHEGKF 318

Query:   241 LHLPXXXXXXXXXXXXXXIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDE 300
             LHLP              IH+THAAVAT G TAG  NEA +TMMQKFWDSAMALSPN+D+
Sbjct:   319 LHLPVTDKEGDVVAVVDVIHVTHAAVATAGTTAGIGNEATNTMMQKFWDSAMALSPNEDD 378

Query:   301 EDNR 304
             ED+R
Sbjct:   379 EDSR 382

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

ASPGD|ASPL0000033419 AN5716 [Emericella nidulans (taxid:162425)]

 Score = 415 (151.1 bits), Expect = 2.4e-38, P = 2.4e-38
 Identities = 101/291 (34%), Positives = 156/291 (53%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MAA+R D +L+TD +  + GI T KD+A RV+   L   +  VS++MT+NP    +DT A
Sbjct:   132 MAAKREDCVLVTDDDDRIAGIFTAKDLAFRVVGAGLKARDITVSEIMTKNPLCARTDTSA 191

Query:    61 VEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXX 119
              +AL  MV+  FRHLPV+ EN ++  +LDI KC YDA+ ++ER                 
Sbjct:   192 TDALDLMVRKGFRHLPVMDENQDISGVLDITKCFYDAMEKLERAYSSSRKLYDALEGVQS 251

Query:   120 HWGTSISGPNT-FIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA 178
               G+S       ++E LR +M  P+L +++ +     T+S   TV  A   M E   ++ 
Sbjct:   252 ELGSSQPQQIIQYVEALRSKMSGPTLESVL-DGMPPTTVSVRTTVKEAAALMKEHHTTAL 310

Query:   179 VVTVENKPRGILTSKDILMRVISQNL-PADSTLVEKVMTPNPECATIDTPIVDALHIMHD 237
             +V  +    GI TSKDI++RVI+  L PA  ++V +VMTP+P+ A  D  I  AL  MHD
Sbjct:   311 LVQDQGSITGIFTSKDIVLRVIAPGLDPATCSVV-RVMTPHPDFAPSDMSIQAALRKMHD 369

Query:   238 GKFLHLPXXXXXXXXXXXXXXIHITHAAVATVGNTAGSNNEAASTMMQKFW 288
             G +L+LP              + +T+A +  + + +  ++E  +    KFW
Sbjct:   370 GHYLNLPVMNEGGEIVGMVDVLKLTYATLEQINSMSTQDDEGPA--WNKFW 418

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0003938 "IMP dehydrogenase activity" evidence=RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

CGD|CAL0003543 orf19.5238 [Candida albicans (taxid:5476)]

 Score = 334 (122.6 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 93/305 (30%), Positives = 143/305 (46%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             M ARR + +L+ +    L GI T KD+A R++   LN  +  +  +MT+NP    +   A
Sbjct:    73 MTARRENCVLVVNEIGELLGIFTAKDVAFRIVGSGLNATQVTIDTIMTKNPICANAADPA 132

Query:    61 VEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERXXXXXXXXXXXXXXXXX 119
              +AL  MV+  FRHLPV+ E  +++ +LDI K     + ++ER                 
Sbjct:   133 GDALNLMVERGFRHLPVLDEKSQIVGVLDITKSYAQQMEKLERMHSSSKKLHEALDSVHN 192

Query:   120 HWGTSISGPNTF--IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
               G      + F   ETL+ +M  P+L   +   +    ++   +V  AT  M E R ++
Sbjct:   193 EIGVGEQPHHVFQYFETLKNKMNGPTLEDALDANTVPTYVNVKASVHEATMLMKENRTTA 252

Query:   178 AVVTVENKP-RGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMH 236
              +V   N+   GI TSKD+++RVI+  L      V +VMTP P+ A I  P+ DAL  M 
Sbjct:   253 VLVKDTNEQVAGIFTSKDVVLRVIAAGLDPKKCSVVRVMTPQPDVAPIGLPVQDALRKMF 312

Query:   237 DGKFLHLPXXXXXXXXXXXXXXIHITHAAVATV----------GNTA-GSNNEAASTMMQ 285
             DG +L+LP              + +TH  +  +          G+TA  S NE  +    
Sbjct:   313 DGHYLNLPVVANEGDIIGVVEVLKLTHITLNQIKQLETSETSNGSTAVDSTNEGPA--WN 370

Query:   286 KFWDS 290
             KFW S
Sbjct:   371 KFWTS 375

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPAC24C9.05c mug70 "conserved protein Mug20" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 182 (69.1 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
 Identities = 41/112 (36%), Positives = 67/112 (59%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MAA+R + +L+ D +  L GI+T  DIATR +   LN  +T ++ +M+ +P  + SDT  
Sbjct:    89 MAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAGLNARQTLIADIMSTSPLCITSDTRF 148

Query:    61 VEALQKMVQGKFRHLPVV----------ENGEVIALLDIAKCLYDAIARMER 102
              +AL  M++ KFRHLPVV          + G+VI ++++  CL + + R+ R
Sbjct:   149 DDALLLMIEHKFRHLPVVSDGGPDGSAGDEGDVIGIINMRACLREPLNRIAR 200

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 139 (54.0 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 33/99 (33%), Positives = 57/99 (57%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             MA + + AL + + N ++ G+++++D A +VI +  +   TPV ++M+ N    +    +
Sbjct:    34 MAEKNIGALPVVEGNVVV-GVVSERDYARKVILKGRSSVGTPVREIMS-NKVITVDSQQS 91

Query:    61 VEALQK-MVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98
             VEA    M     RHLPVVE+G ++ LL I   + +AIA
Sbjct:    92 VEACMGIMTDSHLRHLPVVEDGRLLGLLSIGDLVKEAIA 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRC8 SPO2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 138 (53.6 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 31/105 (29%), Positives = 57/105 (54%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             +A +R+  ++++D      GIL+++DI   + A        PVS  MT++      D   
Sbjct:    31 LAEKRIGTVVVSDDGETAQGILSERDIVRELAASGSGCLSEPVSTYMTKDLITCGRDAKV 90

Query:    61 VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMER 102
              + L +M +G+FRH+PV+E G+++ L+   D+ K     +A ME+
Sbjct:    91 QDVLSQMTEGRFRHMPVIEEGKLVGLVTLGDVVKAQLAELA-MEK 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2201 SPO_2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 138 (53.6 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 31/105 (29%), Positives = 57/105 (54%)

Query:     1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
             +A +R+  ++++D      GIL+++DI   + A        PVS  MT++      D   
Sbjct:    31 LAEKRIGTVVVSDDGETAQGILSERDIVRELAASGSGCLSEPVSTYMTKDLITCGRDAKV 90

Query:    61 VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMER 102
              + L +M +G+FRH+PV+E G+++ L+   D+ K     +A ME+
Sbjct:    91 QDVLSQMTEGRFRHMPVIEEGKLVGLVTLGDVVKAQLAELA-MEK 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LLL6 Q5LLL6 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 135 (52.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query:     4 RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRN-PTFVLSDTLAVE 62
             +R+ A+L+TD N  L GIL+++DI  R+              +MTR   T    +TL V 
Sbjct:    65 KRIGAVLVTDQNGALLGILSERDIVRRMADTPGQTLPQQAEGLMTRAVQTCAPDETLNV- 123

Query:    63 ALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
              L++M +G+FRHLPV+ +G++  ++ I   +   +  +E
Sbjct:   124 VLKRMTEGRFRHLPVMRDGKLCGMITIGDVVNFRLRELE 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_A0034 SPO_A0034 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 135 (52.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query:     4 RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRN-PTFVLSDTLAVE 62
             +R+ A+L+TD N  L GIL+++DI  R+              +MTR   T    +TL V 
Sbjct:    65 KRIGAVLVTDQNGALLGILSERDIVRRMADTPGQTLPQQAEGLMTRAVQTCAPDETLNV- 123

Query:    63 ALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
              L++M +G+FRHLPV+ +G++  ++ I   +   +  +E
Sbjct:   124 VLKRMTEGRFRHLPVMRDGKLCGMITIGDVVNFRLRELE 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BYV1 HNE_2660 "CBS domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 126 (49.4 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/98 (29%), Positives = 49/98 (50%)

Query:     4 RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEA 63
             RR+ A++  D++  + G+L+++DI  +   +     + PV   MTR    + +D    EA
Sbjct:    33 RRIGAVVTLDADGEIVGVLSERDIVRQFARQGEGALDMPVGNAMTRAVITISADAEVDEA 92

Query:    64 LQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
             LQ M   + RHLPVV N  +   + I   +   IA  +
Sbjct:    93 LQLMTDRRIRHLPVVRNSRLTGFVSIGDLVKWKIAETQ 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0DH79	Y5064_ARATH	No assigned EC number	0.7993	0.9870	0.5547	yes	no
Q0WLC7	Y5053_ARATH	No assigned EC number	0.7993	0.9870	0.5547	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XII000372 SubName- Full=Putative uncharacterized protein; (535 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	7e-49
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	2e-34
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	6e-22
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-21
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	2e-21
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	2e-21
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	2e-20
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	8e-19
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	6e-15
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-14
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	9e-14
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-13
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	1e-13
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	9e-13
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	1e-12
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-11
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	2e-11
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	2e-11
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	2e-11
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	3e-11
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	3e-11
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	6e-11
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	1e-10
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	3e-10
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	6e-10
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	6e-10
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	3e-09
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	6e-09
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	1e-08
pfam00571	57	pfam00571, CBS, CBS domain	2e-08
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	2e-08
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	2e-08
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	3e-08
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	3e-08
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	4e-08
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	4e-08
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	5e-08
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	9e-08
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	1e-07
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	1e-07
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-07
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	2e-07
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	3e-07
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	3e-07
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	3e-07
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	5e-07
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	5e-07
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	8e-07
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	9e-07
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-06
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-06
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	2e-06
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	3e-06
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	6e-06
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	7e-06
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	7e-06
pfam00571	57	pfam00571, CBS, CBS domain	8e-06
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	8e-06
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	1e-05
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	1e-05
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	1e-05
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	2e-05
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	2e-05
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	2e-05
pfam00571	57	pfam00571, CBS, CBS domain	3e-05
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	3e-05
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	4e-05
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	5e-05
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	6e-05
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	6e-05
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	6e-05
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	9e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	9e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-04
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	1e-04
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	1e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	1e-04
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	2e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	2e-04
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	2e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	3e-04
cd04619	114	cd04619, CBS_pair_6, The CBS domain, named after h	3e-04
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	3e-04
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	4e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	5e-04
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	6e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.001
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	0.001
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	0.001
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	0.001
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	0.001
PRK10892	326	PRK10892, PRK10892, D-arabinose 5-phosphate isomer	0.001
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	0.002
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	0.002
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	0.002
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	0.002
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.002
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	0.002
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	0.003
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	0.003
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	0.003
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	0.004

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  158 bits (402), Expect = 7e-49
 Identities = 65/113 (57%), Positives = 82/113 (72%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           +K  T+SPT TV  A K M E R+S  +V   NK  GI TSKDI +RV++Q L  +STLV
Sbjct: 1   TKPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLV 60

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           E+VMTPNP CAT DTP+++ALH+M  GKF HLPVVD+ G VV ++DV  +THA
Sbjct: 61  ERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  121 bits (305), Expect = 2e-34
 Identities = 50/96 (52%), Positives = 64/96 (66%), Gaps = 2/96 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  +RV  +L+ D N L  GI T KDIA RV+A+ L+ E T V +VMT NP    SDT  
Sbjct: 19  MREKRVSCVLVMDGNKL-VGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPV 77

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYD 95
           +EAL  MVQGKFRHLPVV ++G+V+ LLD+ K  + 
Sbjct: 78  LEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 88.3 bits (220), Expect = 6e-22
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
             VT SP  T+  A + M E R+SS +V  + +  GI+T +D+  RV+++ L  D T V 
Sbjct: 2   PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLDPD-TPVS 60

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           +VMT  P     D  + +AL +M +    HLPVVD DG +V V+
Sbjct: 61  EVMTAPPITIPPDATVFEALLLMLERGIHHLPVVD-DGRLVGVI 103

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 87.6 bits (218), Expect = 1e-21
 Identities = 33/89 (37%), Positives = 55/89 (61%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + A+++ D    L GI +++DI  +V  R  +  +TPVS++MTRN   V  D   
Sbjct: 19  MAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTV 78

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDI 89
            EA+  M + +FRHLPVV+ G+++ ++ I
Sbjct: 79  DEAMALMTERRFRHLPVVDGGKLVGIVSI 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 87.2 bits (217), Expect = 2e-21
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M   RV +LL+ D +  L GI+TD+D+  RV+A  L+ + TPVS+VMT  P  +  D   
Sbjct: 19  MTEHRVSSLLVVD-DGRLVGIVTDRDLRNRVVAEGLDPD-TPVSEVMTAPPITIPPDATV 76

Query: 61  VEALQKMVQGKFRHLPVVENGEVI 84
            EAL  M++    HLPVV++G ++
Sbjct: 77  FEALLLMLERGIHHLPVVDDGRLV 100

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 86.8 bits (216), Expect = 2e-21
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTLV 211
            V+T+ P  TV  A K M E  + + VV     +  GI + +DI+ +V  +   A  T V
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPV 61

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            ++MT N    T D  + +A+ +M + +F HLPVVD  G +V +V
Sbjct: 62  SEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD-GGKLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 84.5 bits (210), Expect = 2e-20
 Identities = 36/105 (34%), Positives = 58/105 (55%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             VVT+SP DT+  A + M E  + +  V   ++  GI+T +DI++R +++    D+T V
Sbjct: 1   RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTV 60

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             VMT      T D  + +A  +M + +   LPVVD DG +V +V
Sbjct: 61  GDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 79.8 bits (197), Expect = 8e-19
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
             VVT+SP DTV  A + MLE  +S   V  ++ +  GI+T +D+ +R +++        
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDL-LRALAEGGLDPLVT 59

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V  VMT +    + DT + +A  +M +     LPVVD +G +V +V
Sbjct: 60  VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 69.4 bits (171), Expect = 6e-15
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M+ + +    + D +  L GI TD D+  R + + L++   PV+ VMTRNP  +  D LA
Sbjct: 20  MSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALA 78

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALLDI 89
            EAL+ M + K   LPVV +NG  + +L I
Sbjct: 79  AEALELMEENKITALPVVDDNGRPVGVLHI 108

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 68.7 bits (168), Expect = 1e-14
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
              V+T+ P  +V  A   M E  +S+  V  + K  GI+T +DIL  + +         
Sbjct: 6   TKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGG--KRLLP 63

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDG-KFLHLPVVDRDGDVVDVVDVIHIT 262
           V++VMT        DTP+ +AL +M +  K   LPVVD DG    +V +I ++
Sbjct: 64  VKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGG--KLVGIITLS 114

Length = 117

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 66.0 bits (162), Expect = 9e-14
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           ++T  P  ++  A  +M E R+SS VV  + +P GI+T +DIL R+++      + + E 
Sbjct: 3   ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPDLQTPVGE- 60

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH 260
           VM+        DT + DA  +M +    HL VVD DG+++ ++   D++ 
Sbjct: 61  VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 65.6 bits (161), Expect = 1e-13
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V AL + +++ L+ GI+TD+DI  R +A   + + T V  VMTR    V  D   
Sbjct: 19  MREHDVGALPVCENDRLV-GIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDV 77

Query: 61  VEALQKMVQGKFRHLPVVENGE----VIALLDIAKC 92
            EA + M + + R LPVV++      +++L D+A+ 
Sbjct: 78  DEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---------Q 202
             V+T+SP D V  A + ML+  +S   V    K  GI+T KDI   + S         Q
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQ 60

Query: 203 NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                +  V  +MT        DT + D   +M +     LPVVD DG +V +V
Sbjct: 61  ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-DGKLVGIV 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 63.4 bits (155), Expect = 9e-13
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA   V ++++ D +    GI+T++DI  R +A  ++L+ TPVS++MTR+   V  D   
Sbjct: 19  MAEENVGSVVVVDPDERPIGIVTERDI-VRAVAAGIDLD-TPVSEIMTRDLVTVDPDEPV 76

Query: 61  VEALQKMVQGKFRHLPVVENGE----VIALLDIAKC 92
            EA + M +   RH  VV+ G     VI++ D+ + 
Sbjct: 77  AEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V +L++ D +  L GI+T KD+ +RVIA +   +   VS+VMT     V      
Sbjct: 175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIA-DGRSKTQKVSEVMTSPVISVDRGDFL 233

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCL 93
            EA+  M++ + +HLPV E+G+ + +L +   L
Sbjct: 234 FEAMLMMLRNRIKHLPVTEDGQPLGILTLTDIL 266

Length = 610

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    +  L + D +  L GI+T++D+  R +A         V  VMTR+   V  DT  
Sbjct: 19  MLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSL 77

Query: 61  VEALQKMVQGKFRHLPVVENGE----VIALLDIAK 91
            EA + M++   R LPVV++      ++   DI +
Sbjct: 78  EEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL 210
             VVT+ P  ++  A K M E  + S VV   + +P GI+T +DI+ R ++  +    T 
Sbjct: 1   RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGID-LDTP 58

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V ++MT +      D P+ +A  +M      H  VVD+ G++V V+
Sbjct: 59  VSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ---------N 203
             +T++P  +++ A K M E  +    V    K  GI+T +D+ +   S+          
Sbjct: 2   NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLDIWELY 61

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                  V  +MT +P   + D  + +A  +M + K   LPVVD  G +V ++
Sbjct: 62  YLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGII 114

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 21/125 (16%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL- 210
            V+T+   DT+    + +L  ++S   VV  E +  GI++  D++ ++         TL 
Sbjct: 2   DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLL 61

Query: 211 ------------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV 252
                             VE++MT        DT I D   IM       LPVVD DG +
Sbjct: 62  YSVIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-DGKL 120

Query: 253 VDVVD 257
           V ++ 
Sbjct: 121 VGIIS 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           V+T+ P  TV  A   M E  +   +V    KP GI+T +D++ +V+S+NL      V +
Sbjct: 3   VITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGE 62

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262
           VM+        +  + +A  +M       LPVVD D ++V +V    I 
Sbjct: 63  VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVD-DDELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 59.1 bits (144), Expect = 3e-11
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTLVEK 213
           + +SP  ++L A +K+ +  L   +V  EN +  G +T  DI  R + + L  D   V +
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDI-RRALLKGLSLDDP-VSE 62

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV 255
           VM  NP  A + +   + L +M +    HLP++D +G VV +
Sbjct: 63  VMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGL 104

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 58.3 bits (142), Expect = 6e-11
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 9   LLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMV 68
           +L+ D N  L G +TD DI  R + + L+L+  PVS+VM RNP      +   E L  M 
Sbjct: 28  VLVVDENGRLLGTVTDGDI-RRALLKGLSLD-DPVSEVMNRNPITAKVGSSREEILALMR 85

Query: 69  QGKFRHLPVV-ENGEVIALLDI 89
           +   RHLP++ E G V+ L  +
Sbjct: 86  ERSIRHLPILDEEGRVVGLATL 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV 211
             VT+SP  ++  A +KM +  +SS VV        GI+T KD+  RVI+         V
Sbjct: 158 PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQK-V 216

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261
            +VMT           + +A+ +M   +  HLPV + DG  + ++ +  I
Sbjct: 217 SEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDI 265

Length = 610

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPAD--- 207
           S VVT+S  D++  A + M E R+    VV  + K  G+LT +D+L   +S         
Sbjct: 1   SPVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEES 60

Query: 208 -----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                   V +VM  +    T DTP+ +A  IM + K   LPVVD  G +V ++
Sbjct: 61  LTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 161 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220
           D +L  ++K L +   +AVV  + +  GI T  D L R + + L   +  V  VMT NP+
Sbjct: 15  DALLEMSRKGLGM---TAVVDEDGRLVGIFTDGD-LRRALEKGLDILTLPVADVMTRNPK 70

Query: 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260
               D    +AL +M + K   LPVVD +G  V V+  IH
Sbjct: 71  TIDPDALAAEALELMEENKITALPVVDDNGRPVGVLH-IH 109

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 4/88 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  RR+ ++++ D    L GI+T++DI  R++A   +L+ TPV +VM+     V +DT  
Sbjct: 19  MRERRISSIVVVDDGRPL-GIVTERDIL-RLLASGPDLQ-TPVGEVMSSPLLTVPADTSL 75

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL 87
            +A Q M +   RHL VV ++GE++ LL
Sbjct: 76  YDARQLMREHGIRHLVVVDDDGELLGLL 103

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 53.6 bits (130), Expect = 3e-09
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            +T+SP  TV  A + M E  +S   VV  + K  GI+T++D  +R  +         V 
Sbjct: 4   PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRD--LRFETD----LDKPVS 57

Query: 213 KVMTPNPECAT-IDTPIVDALHIMHDGKFLHLPVVDRDG 250
           +VMTP     T   T + +AL ++H+ K   LPVVD +G
Sbjct: 58  EVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEG 96

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL------PA 206
           +VVT+   D +    +   + +    +V  +N+  G+++ +D L + IS  L        
Sbjct: 2   RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEK 60

Query: 207 D----STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           D    +    ++MT +P   + DTP+ +A  ++ +     LPVVD +G ++ ++
Sbjct: 61  DLATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
             + +  + ++  A + M E    + +V   +   GI+T  D+L  V+   LP+ ST V 
Sbjct: 2   PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPS-STPVG 60

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 257
           ++ T        D  + +AL +M   + +H  VV   G+VV V++
Sbjct: 61  EIATFPLITVDPDDFLFNALLLMTRHR-IHRVVVREGGEVVGVLE 104

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           V+ +MTP+      DT + +AL +M +     LPVVD DG +V +V +  +  A
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 20/112 (17%)

Query: 155 VTISPTDTVLMATKKMLELR----LSSAVVTVENKPR----GILTSKDILMRVISQNLPA 206
             +SP  TV      +LE++     SS ++TV+ K      GI+TS+DI        +  
Sbjct: 107 YVLSPNHTV----ADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID------FVKD 156

Query: 207 DSTLVEKVMTPNPECATIDTPIV--DALHIMHDGKFLHLPVVDRDGDVVDVV 256
            ST V +VMTP  +    +TPI   +A  ++ + +   LP+V+ +G++V +V
Sbjct: 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV 208

Length = 495

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRV-------ISQNLP 205
           VVT++P  ++  A   +   R+ +  VV  + +  GI+T +D+L          +   L 
Sbjct: 4   VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLR 63

Query: 206 ADST--LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                  V  +M+P       DTPI + + ++ DG   H+PVVD D  +V +V
Sbjct: 64  GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIV 116

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
           T++P   +  A   M E  L S VV    +  G+LT +++L  +         T V  +M
Sbjct: 5   TVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIM 64

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            P P  A+ D  I +   +M +    +LPV+D  G ++ V+
Sbjct: 65  NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 23/127 (18%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           + VVT+SP  +V  A + ML+  +S   VV  + +  GI++  D+L R         +  
Sbjct: 2   TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARW 61

Query: 211 ---------------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 249
                                V  VMT        DTP+ +   +M + +   +PVV R 
Sbjct: 62  LDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVV-RG 120

Query: 250 GDVVDVV 256
           G +V +V
Sbjct: 121 GRLVGIV 127

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL---------MRVIS 201
             VVTI+PT T+  A + M E ++    VV  E +  GI+T +D+          +    
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHE 60

Query: 202 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV--VDVVDVI 259
             L      V+++MT +         + +A  +M + +   LPVV+    V  +   D++
Sbjct: 61  LYLLLKMP-VKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119

Query: 260 HI 261
             
Sbjct: 120 RT 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             K++T+ P DT+  A K   E  +  A V  ++K  GI+T  DI   + + NL A    
Sbjct: 179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAK--- 235

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V   M  N      D  I DA+ +M+      L V D +G  V ++
Sbjct: 236 VSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGII 281

Length = 294

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             VVTIS   ++  A K M+E  ++   VV  + +  GI+TS D     IS+ +  D   
Sbjct: 2   RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWD-----ISKAVARDKKS 56

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262
           VE +MT N   AT D PI  A   M       LPVVD +  V+ ++    I+
Sbjct: 57  VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQNLPADSTLV 211
             VTI+P  T+  A K M + ++ S +V   +NK  GI++ + +      +    ++  +
Sbjct: 3   NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESL------EQAYKEAKSL 56

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           E +M  +      D  + D L ++      ++PVVD DG +V ++
Sbjct: 57  EDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLI 101

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMR--------VISQN 203
           + VT +P D V      MLE   +   VV    +  GI+T +DI+             + 
Sbjct: 2   EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRT 61

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 257
               S  VEK+M+      T D  I  A+ +M +     LPVV+    +V +VD
Sbjct: 62  QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVD 115

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDILMRVISQNLPADSTLVEKV 214
           T++P   V  A   M +   SS V+ VE     GI T +DI+ R+ +         + +V
Sbjct: 5   TVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEV 63

Query: 215 MTPNPECATID--TPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           MT             I  AL +    +  HLPV+D  G ++ +V
Sbjct: 64  MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLV 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIA-RELNLEET--------PVSKVMTRNP 51
           M    +  L + +   L+ GI+T+KDIA  + + R L  +          PVS +MTR  
Sbjct: 19  MLDHDISRLPVIEGGKLV-GIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPV 77

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 84
             +  DT   +    M++     LPVV++G+++
Sbjct: 78  ITIEPDTSVSDVASLMLENNIGGLPVVDDGKLV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPAD 207
           S  VTISP  TV    + M    +S   V  +        GI+T +DI      + +   
Sbjct: 88  SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDI------RFVKDK 141

Query: 208 STLVEKVMTP-NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              V +VMT            + +AL ++H+ +   LPVVD++G++V ++
Sbjct: 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLI 191

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 16/103 (15%)

Query: 154 VVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            VT++P  T+  A   M    +S   VV    K  GI+T++D  +R  +      S  V 
Sbjct: 97  PVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRD--VRFETD----LSQPVS 150

Query: 213 KVMTPN-----PECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
           +VMT       PE  T++    +AL ++H+ +   LPVVD +G
Sbjct: 151 EVMTKERLVTVPEGTTLE----EALELLHEHRIEKLPVVDDNG 189

Length = 486

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI--ATRVIARELN------LEETPVSKVMTRNPT 52
           M   ++  L + D    L GI+TD+D+  A+      L+      L + PV ++MT++  
Sbjct: 19  MREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVI 78

Query: 53  FVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 87
            V       EA   M + +   LPVVE+G ++ ++
Sbjct: 79  TVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGII 113

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             VVT+    TV      M   R     V  + +  GI+T  DI  R +       + LV
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADI--RRVPAEGREATVLV 58

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             VMT +P  A+ D  + DAL  M +     LPVVD  G +V +V
Sbjct: 59  GDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIV 103

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR-----GILTSKDILMRVISQNLPAD 207
            VVTI    TV  A + M E  +SS VV    K R     GI+T +DIL +V+++    D
Sbjct: 2   NVVTIDGLATVAEALQLMKEHGVSSLVV---EKRRESDAYGIVTMRDILKKVVAEGRDPD 58

Query: 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
              V ++MT      + D  I     +M        PVV+ + +++ ++ +  I  A
Sbjct: 59  RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-NNELIGIISLTDIFLA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 20  GILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVE-ALQKMVQGKFRHLPVV 78
           GI+T +DI  +V+A   + +   V ++MT+ P   +S  + ++   + M +   R  PVV
Sbjct: 39  GIVTMRDILKKVVAEGRDPDRVNVYEIMTK-PLISVSPDMDIKYCARLMERTNIRRAPVV 97

Query: 79  ENGEVIALLD 88
           EN E+I ++ 
Sbjct: 98  ENNELIGIIS 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            V+T+SP +TV    K + E       V    K  GI++++D+L +            VE
Sbjct: 3   DVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK-------DPDETVE 55

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           ++M+ +   A  +  I+DA  +M       LPVVD + ++V ++   DVI
Sbjct: 56  EIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL---MRVISQNLPADS- 208
           VVT+S   ++  A K + E R+ +  V  E+ +  GI+T +D+L        Q L     
Sbjct: 255 VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRP 314

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIH 260
             V+ +MT        DTP V+ +  + D     LPV+D  G +V +V   D+I 
Sbjct: 315 PTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIA 369

Length = 382

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 22/78 (28%), Positives = 43/78 (55%)

Query: 10  LLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ 69
           L+   N    GI+T++D+  +V++R L   E PV +VM+     +  +    EA + M +
Sbjct: 27  LIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAAKLMAK 86

Query: 70  GKFRHLPVVENGEVIALL 87
              + LPVV++ E++ ++
Sbjct: 87  HGIKRLPVVDDDELVGIV 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M+   V A+ + D   L+ GI+T++DI   + A    L   PV +VMT+    V  DT  
Sbjct: 25  MSENGVSAVPVVDDGKLV-GIITERDILRALAAGGKRL--LPVKEVMTKPVVTVDPDTPL 81

Query: 61  VEALQKMVQG-KFRHLPVVENGE 82
            EAL+ MV+  K R LPVV++  
Sbjct: 82  EEALELMVERHKIRRLPVVDDDG 104

Length = 117

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 39/155 (25%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE-----VIALLDIAKCLYDAIARMER- 102
           ++   V   T  +EA + MV+  FR LPVV+ G      +I   DI K L       E+ 
Sbjct: 1   KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYL----GGGEKF 56

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
              K      A+                  E +R  M              V+TI+P D+
Sbjct: 57  NKIKTGNGLEAIN-----------------EPVRSIM-----------TRNVITITPDDS 88

Query: 163 VLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
           +  A + MLE R+    VV  + K  GI+T +D+L
Sbjct: 89  IKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  ++VD+LL+ D +  L GI++ + +       +   E   +  +M  +   V  D   
Sbjct: 20  MRDKKVDSLLVVDKDNKLLGIVSLESL------EQAYKEAKSLEDIMLEDVFTVQPDASL 73

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL 87
            + L  +++   +++PVV E+G+++ L+
Sbjct: 74  RDVLGLVLKRGPKYVPVVDEDGKLVGLI 101

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 155 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADST-LVE 212
           VT +P  +V  A +K+L+ ++S   VV       G L+ +D L +++  +   D    V 
Sbjct: 4   VTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVR 63

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            +MT      + D  IVD   +M   K    PVVD DG +V  +
Sbjct: 64  DIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-DGKLVGQI 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 18  LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77
           L GI+T KD+         N EE  ++ +MTR+P  V  D    EA + MV+   R +PV
Sbjct: 36  LVGIITRKDLLR-------NPEEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPV 88

Query: 78  VENGEVIALLDIA 90
           V++G+++ ++ +A
Sbjct: 89  VDDGKLVGIVTVA 101

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           VV+++P DTV  A ++M E  +S   V  + +  G +   D+L  +I       S  V +
Sbjct: 3   VVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGK-AKFSLPVRE 61

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           VM         D PI +   ++  G      VVD  G  V ++   D++
Sbjct: 62  VMGEPLPTVDPDAPIEELSELLDRG--NVAVVVDEGGKFVGIITRADLL 108

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDV---VDVIHI 261
            A  DTP++D L ++ + +   LP+VD +G VVDV    DVI++
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 42.2 bits (100), Expect = 8e-06
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYD 95
          V  +MT +   V  DT   EAL+ M +     LPVV E+G+++ ++   D+ + L +
Sbjct: 1  VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVT--VENKPRGILTSKDILMRVISQN------- 203
            VVT+ PT  ++ A K M+        V      K  GI+T+ DIL  +           
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKT 61

Query: 204 ---LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              L A +  V  +MT N    T D  I DA  +M + +   LPVVD DG +V +V
Sbjct: 62  GNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIV 117

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 18  LCGILTDKDIATRVIARELNLEETPVSKVMTRN-PTFVLSDTL-AVEALQKMVQGKFRHL 75
           L GI T++DI  R+ A   +L + P+ +VMT+   T   S+      AL    Q + RHL
Sbjct: 36  LLGIFTERDI-VRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHL 94

Query: 76  PVVENGE-VIALL 87
           PV+++   +I L+
Sbjct: 95  PVLDDQGQLIGLV 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           +  VT+SP  TV  A +      +S   VT + K  G L        +           V
Sbjct: 90  TDPVTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDI----DFLSKVSV 145

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              MT +   A     + +A  I+H+ K   LP+VD DG++V ++
Sbjct: 146 VMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLI 190

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
               ++ TDTV    +   E   S   VV  +NK  GI+TSKD+  +          T +
Sbjct: 3   DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK-------DPDTTI 55

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           EKVMT NP      T +    H+M       LPVVD +  ++ ++   DV+
Sbjct: 56  EKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 13  DSNALLCGILTDKDIATRVI-ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGK 71
           D N  L G L+++D   +++ +         V  +MT     V  D   V+  Q M++ K
Sbjct: 31  DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAK 90

Query: 72  FRHLPVVENGEVIALL 87
            +  PVV++G+++  +
Sbjct: 91  PKRYPVVDDGKLVGQI 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 156 TISPTDTVLMATKKMLELRLSSA------VVTVENKPRGILTSKDILMRVISQNLPADST 209
            +    TV  A + +              VV  E +  G+++ +D+L+           T
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-------DPDT 53

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVI 259
            V  +M  +    + D    +   +      L LPVVD +G +V      DV+DVI
Sbjct: 54  PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 156 TISPTDTVLMATKKMLELRLSSAVVTVENKP-RGILTSKDI---LMRVISQNLPADSTLV 211
            I+PT +   A  +M E RL SA+V  EN    G+ T  D+   L+   S         V
Sbjct: 168 LIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSE-----V 222

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
              MT  P+   +D  +++AL  +   K   L VVD    V+ V+
Sbjct: 223 RDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVIS 201
             VVT+ P  ++  A + M E  +S   V  E+ K  GI+T +D+L  ++ 
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 16/110 (14%)

Query: 155 VTISPTDTV--LMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADS 208
             +SP  TV  ++  K+  +   S   VT + K      GI+TS+DI        L    
Sbjct: 5   SVLSPDHTVADVLEIKE--KKGFSGIPVTEDGKSGGKLLGIVTSRDI------DFLTDSE 56

Query: 209 TLVEKVMTPNPECATIDTPIV--DALHIMHDGKFLHLPVVDRDGDVVDVV 256
           T + +VMTP        T I   +A  I+ + K   LP+V+ DG++V +V
Sbjct: 57  TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALV 106

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI-------ATRVIARELN--LEETPVSKVMTRNP 51
           M    +  L + D   L+ GI+TD+D+       AT +   EL   L +  VS +MTR+P
Sbjct: 19  MKENSIRRLPVVDRGKLV-GIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDP 77

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALL 87
             V  D    EA + M++ K   LPVV+  G ++ ++
Sbjct: 78  ITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGII 114

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 6  VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP--TFVLSDTLAVEA 63
          V +L + D +  L G+++ KD+    I    +L++ PV  +MTR P  T    +   +EA
Sbjct: 24 VGSLFVVDEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMTRMPNITTTTPEESVLEA 82

Query: 64 LQKMVQGKFRHLPVVEN 80
           +K+++ +   LPVVE 
Sbjct: 83 AKKLIEHQVDSLPVVEK 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 30/129 (23%)

Query: 69  QGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128
           + KF HL VVE+ E++ ++     L              KAI+  +         +    
Sbjct: 21  KHKFHHLLVVEDNELVGVISDRDYL--------------KAISPFLG--------TAGET 58

Query: 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPR 187
              + TL  R        I+      +T+SP   V  A+K +LE  +S   VV    +  
Sbjct: 59  EKDLATLNRRA-----HQIM--TRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLI 111

Query: 188 GILTSKDIL 196
           GI+T KD+L
Sbjct: 112 GIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 13 DSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKF 72
          D    + GI+T KD+A +         +T + KVMT+NP  V   T        M+    
Sbjct: 32 DEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGI 84

Query: 73 RHLPVVEN 80
            LPVV++
Sbjct: 85 EMLPVVDD 92

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 10 LLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ 69
           + D +  L GI++  DI   ++      +    S +MT+ P  V  +    +AL+K   
Sbjct: 28 PVVDDDGRLVGIVSLDDIRE-ILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDALKKFED 86

Query: 70 GKFRHLPVVENGE 82
            +  LPVV++  
Sbjct: 87 SDYEQLPVVDDDP 99

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M+ +R+ + ++ D N  L G+ TD D+  R         ++ V   MT  P     D L 
Sbjct: 182 MSEKRLGSAIVCDENNQLVGVFTDGDL--RRALLGGGSLKSEVRDFMTLGPKTFKLDALL 239

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL 87
           +EAL+ + + K   L VV ++ +V+ +L
Sbjct: 240 LEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            ++T++P  T+  A +      +  A V  + K  GI+T  DI    I++ L      V+
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAH-AIARGLE--LAKVK 58

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 261
            VMT +      D  + DA+ +M+      L V D +G  V ++   D++  
Sbjct: 59  DVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 41/150 (27%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIARMERAAEKG 107
           R+   V  D    EAL+ M++     LPVV ++G ++ ++       D +  +       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTER----DLLRALAE----- 51

Query: 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 167
                              G    + T+ + M R            VVT+SP  ++  A 
Sbjct: 52  -------------------GGLDPLVTVGDVMTRD-----------VVTVSPDTSLEEAA 81

Query: 168 KKMLELRLSS-AVVTVENKPRGILTSKDIL 196
           + MLE  +    VV  E +  GI+T  DIL
Sbjct: 82  ELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M     DALL+ D +  L GI+T  D+    +  +     TPV ++ T     V  D   
Sbjct: 19  MREHGADALLVRDGDPRL-GIVTRTDL-LDAVLLDGLPSSTPVGEIATFPLITVDPDDFL 76

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLD 88
             AL  M + +   + V E GEV+ +L+
Sbjct: 77  FNALLLMTRHRIHRVVVREGGEVVGVLE 104

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + +L++ +   L+ G+LT +++   +      + +T V  +M   P     D   
Sbjct: 19  MAEQDLGSLVVMERGELV-GLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSI 77

Query: 61  VEALQKMVQGKFRHLPVVENGE---VIALLDIAK 91
            E  + MV+   R+LPV++ G    VI+  D+AK
Sbjct: 78  DEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAK 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 18 LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77
          L GI+T  DI  R +  E       V  VMTR+P     D    +AL++M +     LPV
Sbjct: 35 LVGIVTLADI--RRVPAEGREATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPV 92

Query: 78 VEN 80
          V++
Sbjct: 93 VDD 95

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 35/143 (24%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN------LP 205
              +T +  DT+  A + + E ++S A V    K  GI++  DIL  +++ +      LP
Sbjct: 1   KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLP 60

Query: 206 -------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKF 240
                                    A    V  +MT      + D  I DA  +M   K 
Sbjct: 61  SPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKI 120

Query: 241 LHLPVVDRDGDVVDVV---DVIH 260
             LPVV+ DG +V +V   D+I 
Sbjct: 121 KRLPVVE-DGRLVGIVTRGDIIE 142

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 54/243 (22%), Positives = 91/243 (37%), Gaps = 41/243 (16%)

Query: 40  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAKCLYD 95
           +  V  +    P  V  DT   EA   M +   + LPVV+       +++L D+A+   D
Sbjct: 67  KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMD 126

Query: 96  A--IARMERAAEKGKAIAAAVEGVEKHWGTSISG-PNTFIETLRER---MFRPSLSTIIP 149
                 + ++    + I   ++      G  + G     +E  +     M   SL   I 
Sbjct: 127 ILDPEILSKSPTSLENIIRTLD------GEVLVGAEEDKVEEGKVVVAAMAPESLLERIE 180

Query: 150 EKSKVVTISPTDTVLMATKKMLELRLSSAVVT--------VENKPRG-----ILTSKD-- 194
           E   V+     D  L A    +E  +   ++T        V    +      I T  D  
Sbjct: 181 EGDIVIVGDREDIQLAA----IEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTF 236

Query: 195 ILMRVISQNLPADSTLVEKVM-TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
              R+I+Q++P     V  +M T +    + D  + D   +M   ++   PVVD DG VV
Sbjct: 237 TTARLINQSIP-----VSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVV 291

Query: 254 DVV 256
            V+
Sbjct: 292 GVI 294

Length = 546

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 18 LCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV 77
          + GI++ +D+     A    L   PV   M+ +   V  DT   E  + MV+     +PV
Sbjct: 36 VVGIISRRDV---EKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPV 92

Query: 78 VENGEVI 84
          VE+G ++
Sbjct: 93 VEDGRLV 99

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
            VVTI     +      +     ++  VV  + +  GI++  DI   ++      D  + 
Sbjct: 2   DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVA 60

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251
             +MT  P     +  + DAL    D  +  LPVVD D  
Sbjct: 61  SDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG 100

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239991 cd04619, CBS_pair_6, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 4   RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEET-PVSKVMTRNPTFVLSDTLAVE 62
             +D +++ D +  L G+LT  D+  R + R      T PV  VMTR         L  +
Sbjct: 22  PGIDLVVVCDPHGKLAGVLTKTDV-VRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD 80

Query: 63  ALQKMVQGKFRHLPVV-ENGEVIALLDI 89
             Q M Q   +++PVV EN   + +L+ 
Sbjct: 81  VWQVMKQRGLKNIPVVDENARPLGVLNA 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 137 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSK 193
           ERM    +   +   S V+T SP D+V  A  +MLE   SS VV     + K  GILT K
Sbjct: 66  ERMLDLPVYDAM--SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKK 123

Query: 194 DILMR 198
           D+L  
Sbjct: 124 DVLRA 128

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARE--------LNLEETPVSKVMTRNPT 52
           M   R+  L + + +  L G+LT +D+    ++              + PV++VM  +  
Sbjct: 19  MREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVL 78

Query: 53  FVLSDTLAVEALQKMVQGKFRHLPVVENGE 82
            V  DT   EA + MV+ K   LPVV++  
Sbjct: 79  TVTPDTPLREAAEIMVENKIGCLPVVDDKG 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR--GILTSKDILMRVISQNLPADST 209
            K   +     +  A  +M      +  V V++K R  GI+T  D+L   +      D  
Sbjct: 1   MKPSCVVLNTDIARAVAEMYTSGSRALPV-VDDKKRLVGIITRYDVLSYALESEELKD-A 58

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            V +VM         +  I  A  +M +     LPV+D  G V  +V
Sbjct: 59  KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 11/96 (11%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTF-VLSDTL 59
           MA   +  + + D N  L GI+T++D+  R           PVS+VMT+     V   T 
Sbjct: 113 MARYGISGVPVVDENGKLVGIITNRDV--RFETD----LSQPVSEVMTKERLVTVPEGTT 166

Query: 60  AVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAK 91
             EAL+ + + +   LPVV +NG +  L+   DI K
Sbjct: 167 LEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEK 202

Length = 486

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSN 276
            +    + D  + +AL +M +     LPVVD DG +V +V    +  A      +   + 
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 277 NEAAST 282
            +  + 
Sbjct: 61  GDVMTR 66

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 9   LLLTDSNALLCGILTDKDIATRV---------IARELNLEETPVSKVMTRNPTFVLSDTL 59
           LL+ + N L  G+++D+D    +           ++L        ++MTR+P  V  DT 
Sbjct: 27  LLVVEDNEL-VGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVSPDTP 85

Query: 60  AVEALQKMVQGKFRHLPVV-ENGEVIALL 87
             EA + +++     LPVV ENG++I ++
Sbjct: 86  VDEASKLLLENSISCLPVVDENGQLIGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI-------ATRVIARELNLEETP--VSKVMTRNP 51
           +   R+ AL + D +  L GI+T +D+         R +   L   + P  V  +M+   
Sbjct: 20  LRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPV 79

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIA 85
             V  DT   E +  +  G   H+PVV+    + 
Sbjct: 80  VTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLV 113

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
           VV ++   T     + + E ++S   VV    +  GI+T KD+L          +   + 
Sbjct: 3   VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN-------PEEEQLA 55

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
            +MT +P   + D  + +A  +M +     +PVVD DG +V +V V  I  A
Sbjct: 56  LLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
           VVT+SP  T+  A + + E  +    VV  E +  GI+T +DI+
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 13  DSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKF 72
           D N  + GI TD D+  RV    ++L +  ++ VMT     V    LAV+AL  M     
Sbjct: 242 DDNMKIEGIFTDGDL-RRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHI 300

Query: 73  RHLPVVENGEVIALL 87
             + V +   ++ +L
Sbjct: 301 TSVLVADGDHLLGVL 315

Length = 326

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 35/139 (25%)

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGV 117
             A + M+      LPV+E G+++ ++   DIA                  A+ +    V
Sbjct: 13  SHARRLMLDHDISRLPVIEGGKLVGIVTEKDIAD-----------------ALRSFRPLV 55

Query: 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
                               R+    +S I+     V+TI P  +V      MLE  +  
Sbjct: 56  RD-------------RHQERRIRNLPVSDIM--TRPVITIEPDTSVSDVASLMLENNIGG 100

Query: 178 AVVTVENKPRGILTSKDIL 196
             V  + K  GI+T  DIL
Sbjct: 101 LPVVDDGKLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 38/153 (24%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGK 108
           +NP  V  DT  +EAL+ M +   R LPVV+ G+++ ++           R  + A   K
Sbjct: 1   KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIV---------TDRDLKLASPSK 51

Query: 109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTI---IPEKSKVVTISPTDTVLM 165
           A                        TL        LS I          +T+SP  +V  
Sbjct: 52  A-----------------------TTLDIWELYYLLSKIKVSDIMTRDPITVSPDASVEE 88

Query: 166 ATKKMLELRLSSAVVTVENKPR--GILTSKDIL 196
           A + MLE ++S   V V+++ R  GI+T  D+ 
Sbjct: 89  AAELMLERKISGLPV-VDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 261
           +    + DT + +AL ++ +     LPVVD +G +V +V   D+I  
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKA 47

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
             +VVTISP  ++L A + M E ++    V  E K  GI+T   I 
Sbjct: 58  TREVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 1  MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
          +   +  + L+ D +  + GI+T  D+  R +  +   E + V +V T     V  D   
Sbjct: 19 LIESKHGSALVVDRDGGVVGIITLPDL-LRALEADEAGEPSAVDEVATPPLLTVHPDEPL 77

Query: 61 VEALQKMVQGKFRHLPVV 78
            AL +M     R LPVV
Sbjct: 78 AHALDRMASRGLRQLPVV 95

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNL----PA 206
            +V  +  T+T+  A   + +   S+  V+  E K  G ++  DIL ++           
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERL 60

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
               V  VM  +      D  I + LH++ D  F  LPVVD DG
Sbjct: 61  VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQPF--LPVVDDDG 102

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 37/153 (24%)

Query: 49  RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAA 104
           R+   +   T   EAL+ M + K RHLPVV E G ++ ++   D+            R A
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDL------------RDA 48

Query: 105 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVL 164
                              S S   T  E     + +  +  I+     V+T+ P DTV 
Sbjct: 49  -------------------SPSPFTTLSEHELYLLLKMPVKEIM--TKDVITVHPLDTVE 87

Query: 165 MATKKMLELRLSSAVVTVENKPRGILTSKDILM 197
            A   M E R+    V  + +  GI+T  D+L 
Sbjct: 88  EAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 51/139 (36%)

Query: 62  EALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGV 117
           EA + M++    HLPVV E+G ++ ++   DI+K    A+AR ++               
Sbjct: 15  EAAKLMIEENINHLPVVDEDGRLVGIVTSWDISK----AVARDKK--------------- 55

Query: 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
                           ++ + M R            V+T +P + + +A +KM    +S+
Sbjct: 56  ----------------SVEDIMTR-----------NVITATPDEPIDVAARKMERHNISA 88

Query: 178 -AVVTVENKPRGILTSKDI 195
             VV  EN+  GI+TS+DI
Sbjct: 89  LPVVDAENRVIGIITSEDI 107

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
             +TI P D+V  A + M + R+    V  + K  GI+TS+D + R     L AD+ +  
Sbjct: 2   DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRD-VRRAHPNRLVADA-MTR 59

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 249
           +V+T +PE +     +++A  +M + K   LPV+   
Sbjct: 60  EVVTISPEAS-----LLEAKRLMEEKKIERLPVLRER 91

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 109 AIAAAVEGVEKHWGTSISGPNTFIET---LRERMFRPSLSTIIPEK----SKVVTISPTD 161
           A     EGV        SGP   I T   LR R+     S          S V+++   D
Sbjct: 172 ARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVISVDRGD 231

Query: 162 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL 204
            +  A   ML  R+    VT + +P GILT  DIL R+ SQN 
Sbjct: 232 FLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDIL-RLFSQNS 273

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
COG2524	294	Predicted transcriptional regulator, contains C-te	99.79
COG2524	294	Predicted transcriptional regulator, contains C-te	99.77
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.76
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.72
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.69
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.68
COG3620	187	Predicted transcriptional regulator with C-termina	99.68
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.66
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.66
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.66
COG3620	187	Predicted transcriptional regulator with C-termina	99.65
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.65
PRK11573	413	hypothetical protein; Provisional	99.64
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.64
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.64
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.63
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.62
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.62
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.61
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.61
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.6
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.6
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.6
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.6
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.6
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.6
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.6
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.6
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.59
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.59
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.59
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.59
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.59
COG2905	610	Predicted signal-transduction protein containing c	99.59
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.59
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.58
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.58
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.58
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.58
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.57
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.57
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.57
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.57
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.57
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.57
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.57
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.57
COG4109	432	Predicted transcriptional regulator containing CBS	99.56
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.56
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.56
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.56
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.55
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.55
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.55
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.55
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.55
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.55
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.54
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.54
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.54
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.54
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.54
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.53
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.53
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.53
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.53
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.52
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.52
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.52
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.52
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.52
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.52
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.51
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.5
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.5
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.5
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.5
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.5
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.48
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.48
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.48
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.47
COG0517	117	FOG: CBS domain [General function prediction only]	99.47
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.46
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.46
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.45
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.44
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.44
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.44
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.44
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.43
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.43
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.43
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.42
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.42
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.42
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.42
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.42
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.42
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.4
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.4
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.4
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.39
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.39
COG2905	610	Predicted signal-transduction protein containing c	99.38
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.38
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.38
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.37
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.37
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.36
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.35
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.34
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.34
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.34
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.34
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.34
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.33
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.33
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.33
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.33
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.33
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.33
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.33
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.33
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.33
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.33
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.33
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.32
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.32
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.32
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.32
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.32
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.32
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.31
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.31
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.3
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.3
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.3
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.29
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.29
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.28
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.28
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.28
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.28
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.27
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.27
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.27
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.27
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.26
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.26
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.26
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.25
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.24
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.24
PRK11573	413	hypothetical protein; Provisional	99.24
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.24
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.24
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.23
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.23
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.23
COG4109	432	Predicted transcriptional regulator containing CBS	99.22
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.22
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.22
COG0517	117	FOG: CBS domain [General function prediction only]	99.22
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.22
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.21
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.21
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.2
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.2
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.2
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.2
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.2
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.18
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.18
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.17
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.16
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.15
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.15
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.14
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	99.14
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.1
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.09
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.06
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.05
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.9
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.89
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.89
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.82
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.58
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.56
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.53
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.49
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.47
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.45
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.31
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.17
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.12
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.06
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.99
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.85
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.68
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.5
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.25
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	97.19
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.79
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.61
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.21
KOG2118	498	consensus Predicted membrane protein, contains two	91.04
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	86.03

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.79  E-value=1.1e-18  Score=142.65  Aligned_cols=123  Identities=25%  Similarity=0.334  Sum_probs=112.5

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~  219 (308)
                      .+.++.++|.  ++++++.+++++.++..+|.+++++.+||+|+++++|++|.+|+. .+++++.-  ...++++|.+++
T Consensus       170 Pk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~-~aia~g~~--~~kV~~~M~k~v  244 (294)
T COG2524         170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIA-KAIANGNL--DAKVSDYMRKNV  244 (294)
T ss_pred             Ccchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHH-HHHHcCCc--cccHHHHhccCC
Confidence            4556788898  899999999999999999999999999999977999999999995 77766632  568999999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      .++.+++.+.+|++.|.++++.+|.|+|.+|+++|+||++||++.+..
T Consensus       245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence            999999999999999999999999999999999999999999987643

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.77  E-value=2.9e-18  Score=140.25  Aligned_cols=123  Identities=22%  Similarity=0.354  Sum_probs=110.3

Q ss_pred             cCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        36 ~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      ..+.+.+++++|+++++++++++++.+|..+|.+++++++||+|+++++|+++.+|+..+....                
T Consensus       167 ~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g----------------  230 (294)
T COG2524         167 VSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANG----------------  230 (294)
T ss_pred             eecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcC----------------
Confidence            3566778999999999999999999999999999999999999988999999999997653321                


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHH
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (308)
                                             ....++.++|.  ++++++..++.+.+|+++|.+++++++.|+| +|+++|++|++|
T Consensus       231 -----------------------~~~~kV~~~M~--k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTD  285 (294)
T COG2524         231 -----------------------NLDAKVSDYMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTD  285 (294)
T ss_pred             -----------------------CccccHHHHhc--cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHH
Confidence                                   23456899998  8999999999999999999999999999999 999999999999


Q ss_pred             HHHHH
Q 021709          195 ILMRV  199 (308)
Q Consensus       195 l~~~~  199 (308)
                      ++.++
T Consensus       286 IL~~i  290 (294)
T COG2524         286 ILTRI  290 (294)
T ss_pred             HHHHh
Confidence            98554

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.76  E-value=6e-17  Score=145.45  Aligned_cols=240  Identities=21%  Similarity=0.219  Sum_probs=175.4

Q ss_pred             CCCCcCEEEEECC-CCcEEEEEehhHHHHHHHHhcc------CCcc---------ccc----ccccccCceEEeCCCcHH
Q 021709            2 AARRVDALLLTDS-NALLCGILTDKDIATRVIAREL------NLEE---------TPV----SKVMTRNPTFVLSDTLAV   61 (308)
Q Consensus         2 ~~~~~~~~~V~~~-~~~~~Giit~~D~~~~~~~~~~------~~~~---------~~v----~~im~~~~~~v~~~~~l~   61 (308)
                      ..++.++.|+++. .....|+++..|+...+.....      +...         ..+    +....++++.+.+..++.
T Consensus        95 ~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l  174 (381)
T KOG1764|consen   95 VQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL  174 (381)
T ss_pred             HhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH
Confidence            3567888999985 3578999999999854433111      0000         011    111223448999999999


Q ss_pred             HHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHh
Q 021709           62 EALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERM  139 (308)
Q Consensus        62 ~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (308)
                      ++...+.+++++++||.|  .+.+..+++.+.+++.+........                              +.. +
T Consensus       175 ~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~------------------------------~~~-~  223 (381)
T KOG1764|consen  175 DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP------------------------------LPS-L  223 (381)
T ss_pred             HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc------------------------------cHH-H
Confidence            999999999999999998  4899999999999887553322110                              011 1


Q ss_pred             cCCCcccccCC-CCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccc-ccccc-
Q 021709          140 FRPSLSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL-VEKVM-  215 (308)
Q Consensus       140 ~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~-v~~~~-  215 (308)
                      ...++.++-.. ..++..+..++++.+|+++|..++++.+||++ .|..+|.++..|+...+........... ++... 
T Consensus       224 l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~  303 (381)
T KOG1764|consen  224 LSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALS  303 (381)
T ss_pred             hhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhh
Confidence            12223222211 14599999999999999999999999999999 7777999999999644444444333333 33222 


Q ss_pred             -----ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCC
Q 021709          216 -----TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT  272 (308)
Q Consensus       216 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~  272 (308)
                           .....++..+.+|.+++.+|..++.++++|||++|.++|+||..||+.++.....+.
T Consensus       304 ~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~~~  365 (381)
T KOG1764|consen  304 HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPSGG  365 (381)
T ss_pred             hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCccCC
Confidence                 235689999999999999999999999999999999999999999999888765553

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.72  E-value=1.1e-16  Score=139.69  Aligned_cols=166  Identities=16%  Similarity=0.210  Sum_probs=132.9

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      +...++.++|.++.++.+++++.++.++.+.+.+++++++||++ + +.++|+++.+|++ ........  ..++.++|.
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll-~~~~~~~~--~~~l~~l~r  140 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDAE--AFSMDKVLR  140 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHH-hHhhccCC--cCCHHHHcC
Confidence            45667899999766899999999999999999999999999998 4 7899999999996 44332221  234678886


Q ss_pred             cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCC------------cchhhhH
Q 021709          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN------------EAASTMM  284 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~------------~~~~~~~  284 (308)
                       .+.+++++.++.++++.|.+++.+.+||+|+.|.++|+||+.||++.+++..........            .+.....
T Consensus       141 -~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~  219 (292)
T PRK15094        141 -QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALAS  219 (292)
T ss_pred             -CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccC
Confidence             566899999999999999999999999999999999999999999999987655432111            1222233


Q ss_pred             HHHHHhhccCCCCCchhhhccccC
Q 021709          285 QKFWDSAMALSPNDDEEDNRRFYA  308 (308)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~  308 (308)
                      ....+..+.++++.++|+|++||.
T Consensus       220 l~dl~~~l~~~l~~~~~~Tl~G~i  243 (292)
T PRK15094        220 IEDFNEAFGTHFSDEEVDTIGGLV  243 (292)
T ss_pred             HHHHHHHhCCCCCCCCCccHHHHH
Confidence            566667777888878999999973

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.69  E-value=9.7e-16  Score=145.83  Aligned_cols=216  Identities=20%  Similarity=0.228  Sum_probs=151.0

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      .+++++|.++++++++++++.+|+++|.+++++.+||++ +|+++|+++..|+.+........  +.......++..+.+
T Consensus        68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~--~~~~~~~~t~~~i~~  145 (546)
T PRK14869         68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDP--EILSKSPTSLENIIR  145 (546)
T ss_pred             CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcch--hhhhhcCCCHHHHHH
Confidence            578999999999999999999999999999999999998 68999999999998776643321  011112233333444


Q ss_pred             ccCCCCCChhHHHHHH-HHHhc----CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCC----------
Q 021709          120 HWGTSISGPNTFIETL-RERMF----RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN----------  184 (308)
Q Consensus       120 ~~~~~~~~~~~~~~~~-~~~~~----~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----------  184 (308)
                      .++............. .....    ...+.+.+.+ ..++.+..+..+   ...+.+.+.++++|+.+.          
T Consensus       146 ~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~-~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~~v~~la  221 (546)
T PRK14869        146 TLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE-GDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSEDVLELA  221 (546)
T ss_pred             hcCcEEEecCcccccccccEEEEEcCHHHHHHhccC-CCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence            3333322111100000 00000    0011223332 345555555443   334677889999888632          


Q ss_pred             ---EEEEEeeHHHHHHHHHhcCCCccccccccccc-cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhH
Q 021709          185 ---KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH  260 (308)
Q Consensus       185 ---~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~d  260 (308)
                         .+.+++|..|....+. .-..  ..+++++|+ +++.++++++++.++.+.|..++.+.+||+|++|+++|+||..|
T Consensus       222 ~~~~i~ii~t~~dt~~t~~-~l~~--~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~d  298 (546)
T PRK14869        222 KENGVTVISTPYDTFTTAR-LINQ--SIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYH  298 (546)
T ss_pred             HhCCCeEEEecccHHHHHH-Hhhc--CCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHH
Confidence               3888999999964433 2222  568999999 89999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 021709          261 ITHAA  265 (308)
Q Consensus       261 i~~~~  265 (308)
                      +++..
T Consensus       299 l~~~~  303 (546)
T PRK14869        299 LLSPV  303 (546)
T ss_pred             hhccc
Confidence            99854

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.68  E-value=5.7e-16  Score=129.20  Aligned_cols=133  Identities=26%  Similarity=0.313  Sum_probs=114.0

Q ss_pred             HHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHh----cCCCcccc
Q 021709          135 LRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS----QNLPADST  209 (308)
Q Consensus       135 ~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~----~~~~~~~~  209 (308)
                      +.-.+..-...++|.  +++++++.++++.++.+++.+++++.+||+| +.+++|+||.+|++..+..    ........
T Consensus       238 ~~R~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~  315 (382)
T COG3448         238 LRRRMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPP  315 (382)
T ss_pred             HHHHhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCC
Confidence            333455566789998  8999999999999999999999999999999 8899999999999742221    11222345


Q ss_pred             ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHh
Q 021709          210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (308)
Q Consensus       210 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~  269 (308)
                      .++.+|++...++.++++..+++-.+.+.+.+++||+|+.|+++||||++|++.+++...
T Consensus       316 ~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~  375 (382)
T COG3448         316 TVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNW  375 (382)
T ss_pred             cccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999998877543

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.68  E-value=1.2e-15  Score=115.99  Aligned_cols=120  Identities=23%  Similarity=0.269  Sum_probs=105.5

Q ss_pred             CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCcee
Q 021709          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (308)
Q Consensus       142 ~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (308)
                      .....+|.  .+++.+++++++.++.++|.+++++.+||+++++++|-||..++.+..+....+.....+..+|...+++
T Consensus        65 ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~  142 (187)
T COG3620          65 ITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPT  142 (187)
T ss_pred             EeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCc
Confidence            34578887  8999999999999999999999999999999999999999999975555554666678899999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      |++++++..+.+++..++.  +.|+ ++|+++||||+.||++.+.
T Consensus       143 Vs~~~~l~vI~~LL~~~~A--VlV~-e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         143 VSPDESLNVISQLLEEHPA--VLVV-ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             CCCCCCHHHHHHHHhhCCe--EEEE-eCCceEEEEeHHHHHHHHh
Confidence            9999999999998888774  7677 6899999999999998543

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2e-15  Score=113.65  Aligned_cols=110  Identities=24%  Similarity=0.314  Sum_probs=96.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhc-CCCccccccccccccCceeecCCCCHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~-~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      .+.+++++.++.++++.|.+.+.+.+||++ +|+++|++|..|++ +.... .......++.++|..++.++.+++++.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   80 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVV-RQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD   80 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHH-HHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHH
Confidence            377899999999999999999999999998 88999999999996 44432 2222245788999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++.|..++...+||+|++|+++|+||..|+++
T Consensus        81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          81 VWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            999999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.6e-15  Score=112.95  Aligned_cols=110  Identities=28%  Similarity=0.343  Sum_probs=96.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      ++.++.++.++.++++.|.+.+.+.+||++ + ++++|+++..|+++.+..........++.++|..++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY   81 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence            578899999999999999988999999998 6 89999999999964455443333345788999889999999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++.|.+.+...+||+|+ |+++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            999999999999999987 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.66  E-value=1.4e-15  Score=138.77  Aligned_cols=162  Identities=15%  Similarity=0.164  Sum_probs=129.4

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC--CEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE--NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~  217 (308)
                      ...+++++|+++.++.+++.++++.++.+.+.+++++++||.++  +.++|+++.+|++ .....    ...++.+++. 
T Consensus       189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll-~~~~~----~~~~l~~~~~-  262 (408)
T TIGR03520       189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLL-PHLNK----KNFDWQSLLR-  262 (408)
T ss_pred             CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHH-hHhcc----CCCCHHHHcC-
Confidence            45678999998889999999999999999999999999999983  5899999999997 33322    1235677775 


Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCCc-----------chhhhHHH
Q 021709          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE-----------AASTMMQK  286 (308)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~~-----------~~~~~~~~  286 (308)
                      ++.++++++++.++++.|.+++.+.++|+|+.|..+|+||..||++.+++....+.+....           .......+
T Consensus       263 ~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~l~  342 (408)
T TIGR03520       263 EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTSLK  342 (408)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccCHH
Confidence            6889999999999999999999999999999999999999999999998765543221111           12223345


Q ss_pred             HHHhhccCCCC-----Cchhhhcccc
Q 021709          287 FWDSAMALSPN-----DDEEDNRRFY  307 (308)
Q Consensus       287 ~~~~~~~~~~~-----~~~~~~~~~~  307 (308)
                      ..+..+.+++.     .++|+|.+||
T Consensus       343 ~l~~~l~~~~~~~~~~~~~~~Tl~G~  368 (408)
T TIGR03520       343 DFYKILKLEEDMFDEVKGEAETLAGF  368 (408)
T ss_pred             HHHHHhCCCccccCCcCCCCccHHHH
Confidence            66666777642     4589999987

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.65  E-value=1.8e-15  Score=115.06  Aligned_cols=122  Identities=18%  Similarity=0.300  Sum_probs=104.4

Q ss_pred             cccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        39 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      ...+++.+|.++++.+.+++++.++.++|.+++++.+||+++++++|-++..++.+..++.++.                
T Consensus        63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~----------------  126 (187)
T COG3620          63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMES----------------  126 (187)
T ss_pred             ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccc----------------
Confidence            3567899999999999999999999999999999999999999999999999999887654422                


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~  198 (308)
                                          ....++.++|.  ..++++++++++..+.+++..+  .++.|+++|+++|++|+.|++ +
T Consensus       127 --------------------i~~~~vr~vM~--e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~-k  181 (187)
T COG3620         127 --------------------IRSLRVREVMG--EPFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIM-K  181 (187)
T ss_pred             --------------------hhhhhHHHHhc--CCCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHH-H
Confidence                                12234778887  8899999999999998888754  568888999999999999996 5


Q ss_pred             HHh
Q 021709          199 VIS  201 (308)
Q Consensus       199 ~~~  201 (308)
                      +++
T Consensus       182 ~~~  184 (187)
T COG3620         182 LLA  184 (187)
T ss_pred             HHh
Confidence            543

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.65  E-value=3.2e-15  Score=111.97  Aligned_cols=108  Identities=23%  Similarity=0.268  Sum_probs=94.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.+++++.++.++.+.|.+.+.+.++|++ +++++|+++..|+. +....  .....++.++|...+.++.+++++.++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~a   78 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDL   78 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHH
Confidence            477899999999999999988899999998 78999999999995 43211  111346888998889999999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++|.+++.+.+||+|++|+++|+||..|+++
T Consensus        79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            99999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11573 hypothetical protein; Provisional

Probab=99.64  E-value=3.1e-15  Score=136.55  Aligned_cols=167  Identities=14%  Similarity=0.109  Sum_probs=133.9

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~  217 (308)
                      ...++.++|.|+.++..++.+.++.++.+.+.+++++++||.+  -+.++|++..+|++. ....+.......+.+++ +
T Consensus       185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~-~~~~~~~~~~~~l~~~~-r  262 (413)
T PRK11573        185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR-LMTEKKEFTKENMLRAA-D  262 (413)
T ss_pred             CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHH-HhhccCcCCHHHHHhhc-c
Confidence            4567899999999999999999999999999999999999987  378999999999974 33222211112233444 4


Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCC-c-----------chhhhHH
Q 021709          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN-E-----------AASTMMQ  285 (308)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~-~-----------~~~~~~~  285 (308)
                      ++.+|+++.++.++++.|.+++.+-..|+|+.|...|+||..||++.+++..+...+... .           +......
T Consensus       263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l  342 (413)
T PRK11573        263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANV  342 (413)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeEH
Confidence            789999999999999999999999999999999999999999999999987766533211 1           1222335


Q ss_pred             HHHHhhccCCCCCchhhhccccC
Q 021709          286 KFWDSAMALSPNDDEEDNRRFYA  308 (308)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~  308 (308)
                      +..+..+.+++++++|+|.+||.
T Consensus       343 ~d~~~~l~~~l~~~~~~Tl~G~i  365 (413)
T PRK11573        343 REINKAFNWHLPEDDARTVNGVI  365 (413)
T ss_pred             HHHHHHhCCCCCCCCCeeHHHHH
Confidence            67777788888888999999973

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=5.4e-15  Score=112.32  Aligned_cols=110  Identities=14%  Similarity=0.189  Sum_probs=91.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCC-ccccccc------cccccCceeecC
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-ADSTLVE------KVMTPNPECATI  224 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~-~~~~~v~------~~~~~~~~~v~~  224 (308)
                      ++.++++++++.++.+.|.+++.+++||++ +|+++|+++.+|++ .+...+.. ....++.      +.|..++.++.+
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVI-NLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP   80 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHH-HHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence            578899999999999999999999999998 88999999999996 44433221 1111222      233456789999


Q ss_pred             CCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       225 ~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus        81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=3.2e-15  Score=109.49  Aligned_cols=93  Identities=22%  Similarity=0.267  Sum_probs=84.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      ++.++++++++.++.+.|.+++.+++||++ + ++++|++|..|+. +...                 +.++.+++++.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~-~~~~-----------------~~~v~~~~~l~~   63 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI-LILR-----------------LVSIHPERSLFD   63 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh-hhee-----------------eEEeCCCCcHHH
Confidence            478999999999999999999999999998 4 7999999999996 3211                 778999999999


Q ss_pred             HHHHHHhCCCCEEEEECCC-CcEEEEEEhhHHHH
Q 021709          231 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH  263 (308)
Q Consensus       231 ~~~~~~~~~~~~l~Vvd~~-~~~iGiit~~di~~  263 (308)
                      +++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus        64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            9999999999999999987 89999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=7.4e-15  Score=111.23  Aligned_cols=110  Identities=21%  Similarity=0.259  Sum_probs=94.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CceeecCCCCHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV  229 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~  229 (308)
                      ++.+++++.++.++++.|..++.+.+||++ +++++|++|..|+++... ........++.++|.+  ++.+++.++++.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   80 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI-GGADLQKVPVGVIMTRMPNITTTTPEESVL   80 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH-cCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence            478899999999999999988999999998 789999999999964433 3333334567788874  788999999999


Q ss_pred             HHHHHHHhCCCCEEEEECCC---CcEEEEEEhhHHHH
Q 021709          230 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH  263 (308)
Q Consensus       230 ~~~~~~~~~~~~~l~Vvd~~---~~~iGiit~~di~~  263 (308)
                      +++++|.+++.+.+||+|++   |+++|+||..||++
T Consensus        81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            99999999999999999877   69999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.62  E-value=5.1e-15  Score=123.55  Aligned_cols=129  Identities=20%  Similarity=0.326  Sum_probs=109.9

Q ss_pred             CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      ..+.+..++|+++++++++++++.+|..+|.+++++.+||+| +.+++|+|+++|++...-                   
T Consensus       242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~-------------------  302 (382)
T COG3448         242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR-------------------  302 (382)
T ss_pred             hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC-------------------
Confidence            456789999999999999999999999999999999999998 478999999999975310                   


Q ss_pred             hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl  195 (308)
                                  ..++..++ .+...+++.+|+  +++.++.++++..++.-.+.+.+.+++||+| +|+++|+||++|+
T Consensus       303 ------------~~p~qrlr-~~~~~~vk~imt--~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDl  367 (382)
T COG3448         303 ------------PSPFQRLR-FLRPPTVKGIMT--TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDL  367 (382)
T ss_pred             ------------cchHHHhh-ccCCCccccccc--CcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHH
Confidence                        11222222 245577899998  7999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHh
Q 021709          196 LMRVIS  201 (308)
Q Consensus       196 ~~~~~~  201 (308)
                      + ..+.
T Consensus       368 i-aal~  372 (382)
T COG3448         368 I-AALY  372 (382)
T ss_pred             H-HHHH
Confidence            7 4443

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.62  E-value=1.3e-14  Score=108.76  Aligned_cols=111  Identities=58%  Similarity=0.840  Sum_probs=96.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      ++.++.++.++.++++.|.+.+.+.+||+++++++|+++..|++......+......++.++|...+.++.+++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~   81 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL   81 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence            47788999999999999998888899999889999999999996555544333322578889988899999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +.|..++..++||+|++|+++|+||..|++.
T Consensus        82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            9999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.61  E-value=1.3e-14  Score=109.19  Aligned_cols=110  Identities=27%  Similarity=0.397  Sum_probs=95.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.++.++.++.++.+.|.+.+.+.+||++ +|+++|+++..|+. ............++.++|...+.++..++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-RALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA   80 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHH-HHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence            467889999999999999998999999999 79999999999996 5444333222345788888899999999999999


Q ss_pred             HHHHHhCCCCEEEEECCC--CcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~--~~~iGiit~~di~~  263 (308)
                      ++.|..++...+||+|++  |+++|+||..||++
T Consensus        81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            999999999999999987  89999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.61  E-value=4.2e-15  Score=113.74  Aligned_cols=112  Identities=17%  Similarity=0.128  Sum_probs=95.8

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      +++.+++++.++.++++.|.+++.+.+||++ +++++|+++..|++..+...... ...++.++|.+++.++.+++++.+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~-~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQ-PSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccC-CCCcHHHHhhccceecCCCCCHHH
Confidence            4688899999999999999999999999998 78999999999997444443333 356899999999999999999999


Q ss_pred             HHHHHH---------hCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709          231 ALHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (308)
Q Consensus       231 ~~~~~~---------~~~~~~l~Vvd~~~~~iGiit~~di~~~  264 (308)
                      +.+++.         ..+.+.+||+|++|+++|+||..||+++
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            999653         3356778899988999999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.60  E-value=9.2e-15  Score=130.48  Aligned_cols=123  Identities=22%  Similarity=0.279  Sum_probs=105.8

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~  218 (308)
                      ...+++++|.+.+++.++++++++.++.+.|.+++.+.+||++ +|+++|++|..|+. +....+......++.++|.++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~  278 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG  278 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence            3445789997223899999999999999999988888888888 89999999999994 665544333346899999999


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (308)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~  264 (308)
                      +.++.+++++.++++.|.+++.+.+||+| +|+++|+||+.||+++
T Consensus       279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            99999999999999999999999999997 6899999999999974

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.60  E-value=2.1e-14  Score=132.49  Aligned_cols=138  Identities=22%  Similarity=0.292  Sum_probs=118.8

Q ss_pred             cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI  200 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~  200 (308)
                      -|..+.|.+...+...+.....+..++|.  .+++++.+++++.+++++|.+.+.+.+||+++++++|++|.+|+. .  
T Consensus        67 GGigvIh~n~~i~~qae~v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~-~--  141 (475)
T TIGR01303        67 GGIVILPQDLPIPAVKQTVAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLL-G--  141 (475)
T ss_pred             CCEEEEeCCCCHHHHHHHHhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhh-c--
Confidence            36667777766666666666777778887  789999999999999999999999999999888999999999993 2  


Q ss_pred             hcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       201 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                         ... ..++.++|..++.++++++++.+++++|.+++.+.+||+|++|+++|+||.+||++....
T Consensus       142 ---~~~-~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       142 ---VDR-FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY  204 (475)
T ss_pred             ---CCC-CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence               222 357999999999999999999999999999999999999989999999999999985553

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=2.7e-14  Score=106.96  Aligned_cols=111  Identities=32%  Similarity=0.478  Sum_probs=97.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      ++.++.+++++.++.+.|.+.+.+.+||+++|+++|+++..|++.+....+......++.++|...+.++.+++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence            47789999999999999999899999999889999999999996455544444333348899988999999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +.|...+.+++||+|++|+++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=2.3e-14  Score=107.25  Aligned_cols=110  Identities=33%  Similarity=0.479  Sum_probs=94.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.++.++.++.++.+.|.+.+++.+||++ +++++|+++..|++..+..........++.++|...+.++..+.++.++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   81 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence            467789999999999999988999999998 6899999999999644433322222457888998889999999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.|.+.+.+.+||+++ |+++|+||..||++
T Consensus        82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            99999999999999986 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.60  E-value=1.8e-14  Score=109.86  Aligned_cols=111  Identities=27%  Similarity=0.417  Sum_probs=96.7

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCC----------ccccccccccccCce
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE  220 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~~~~~~~~~  220 (308)
                      +++.++.++.++.++.+.|.+.+++.+||++ +|+++|+++..+++ ........          ....++.++|.+.+.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLL-RHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHH-hhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            5688899999999999999998999999998 79999999999996 44332211          124468889989999


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999999999999998999999999999985

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.60  E-value=2.8e-14  Score=107.04  Aligned_cols=109  Identities=27%  Similarity=0.412  Sum_probs=95.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.++.++.++.++.+.|.+.+.+.++|++ +++++|+++..|++ +........ ..++.++|...+.++.+++++.++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIR-RALLKGLSL-DDPVSEVMNRNPITAKVGSSREEI   80 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHH-HHHhcCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence            467789999999999999988999999998 78999999999996 444333333 346889998889999999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.|..++.+.+||+|++|+++|+||..||+.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            99999999999999998899999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.60  E-value=1.8e-14  Score=133.07  Aligned_cols=136  Identities=25%  Similarity=0.282  Sum_probs=116.3

Q ss_pred             CCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHH
Q 021709          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (308)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~  200 (308)
                      |..+.+.+...+...+.+...++.++|.  .++.++++++++.++++.|.+++++.+||++ +++++|+||.+|+. .. 
T Consensus        69 GiGvih~nl~~~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~-  144 (479)
T PRK07807         69 GLVVLPQDIPIDVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV-  144 (479)
T ss_pred             CceEeeCCCCHHHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-
Confidence            4445555555555556666667788887  7899999999999999999999999999998 88999999999993 21 


Q ss_pred             hcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       201 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                          .. ..++.++|..++.++++++++.+++++|.+++.+.+||+|++|+++|+||..||++...
T Consensus       145 ----~~-~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        145 ----DR-FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             ----cc-CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                22 34789999999999999999999999999999999999998999999999999998654

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=2.1e-14  Score=108.06  Aligned_cols=110  Identities=25%  Similarity=0.345  Sum_probs=93.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-CcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCC--CCHH
Q 021709          153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV  229 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~--~~l~  229 (308)
                      ++.+++++.++.++++.|.+.+ .+.++|.++++++|+++..|++ +...........++.++|..++.++.++  +++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHH-HHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence            4677899999999999998877 6677877788999999999996 5544433322357888998888888887  7899


Q ss_pred             HHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       230 ~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++++.|.+++...+||+|++|+++|+||+.|+++
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=3.6e-14  Score=106.21  Aligned_cols=110  Identities=25%  Similarity=0.391  Sum_probs=93.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      .+.++.++.++.++.+.|.+++.+.++|.++++++|+++..|+++............++.++|...+.++..++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~   81 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR   81 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence            46788999999999999988788778777789999999999996443322222224578899988899999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++|..++...+||+| +|+++|+||..|+++
T Consensus        82 ~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          82 RLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            999999999999998 699999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.59  E-value=5e-14  Score=105.10  Aligned_cols=109  Identities=31%  Similarity=0.481  Sum_probs=96.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      ++.+++++.++.++.+.|.+.+.+.+||+++++++|+++..|++ +....... ...++.++|.+++.++.+++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l   79 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR   79 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHH-HHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence            46789999999999999998888999999889999999999995 55444332 24578899988999999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            9999999999999998899999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.59  E-value=1.5e-14  Score=128.95  Aligned_cols=122  Identities=19%  Similarity=0.275  Sum_probs=105.4

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~  219 (308)
                      ..++.++|.+..++.+++++.++.++.+.|.+.+.+.+||++ +|+++|++|..|+. +.+..+... ..++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence            345888887322399999999999999999888889999999 88999999999995 554433322 456899999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~  264 (308)
                      .++.+++++.++++.|..++...+||+|++|+++|+||+.|++++
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            999999999999999999999999999988999999999999975

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2.8e-14  Score=107.00  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       154 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      +..+.++.++.++++.|.+.+.+.+||++ +++++|+++..|+++.... .......++.++|..++.++..++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE-SEELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhh-hhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            67789999999999999999999999998 7899999999999633333 222234578889988999999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +.|..++...+||+|++|+++|++|..|+++
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=3.3e-14  Score=108.41  Aligned_cols=110  Identities=20%  Similarity=0.300  Sum_probs=90.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCC-----c---cccccccccccCceee
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLP-----A---DSTLVEKVMTPNPECA  222 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~-----~---~~~~v~~~~~~~~~~v  222 (308)
                      ++.++++++++.++++.|.+.+++++||++ + ++++|+++..|+++........     .   ....+...|..++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI   81 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence            577899999999999999988899999998 6 8999999999996433222111     0   0012234677788999


Q ss_pred             cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHH
Q 021709          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  262 (308)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~  262 (308)
                      .+++++.++++.|.+++.+++||+|++|+++|+||..||-
T Consensus        82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            9999999999999999999999999889999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.59  E-value=8.1e-14  Score=126.17  Aligned_cols=120  Identities=27%  Similarity=0.356  Sum_probs=109.5

Q ss_pred             CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCce
Q 021709          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (308)
Q Consensus       142 ~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~  220 (308)
                      +.+.+++.  .+++++++.+++.+|..+|.+.+.+++.+++ ++...||||.+|+..+.++.+.+. ..+++++|+.++.
T Consensus       149 trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~  225 (610)
T COG2905         149 TRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVI  225 (610)
T ss_pred             HHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCce
Confidence            34566666  7899999999999999999999999888888 999999999999988888887776 6799999999999


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      +++.++.+.+|+-.|..++++++||++ +|+++|+||.+||++..
T Consensus       226 svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         226 SVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF  269 (610)
T ss_pred             eecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence            999999999999999999999999996 79999999999999743

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.59  E-value=2.8e-14  Score=106.99  Aligned_cols=111  Identities=28%  Similarity=0.390  Sum_probs=97.2

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      .++.++.++.++.++.+.|.+.+.+.+||++ +++++|+++..++. +++.........++.++|.+.+.++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   80 (114)
T cd04604           2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence            3567789999999999999888889999998 78999999999995 555544443345789999989999999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++.|...+...+||+|++|+++|+||..||++
T Consensus        81 ~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999998899999999999985

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.58  E-value=2.8e-14  Score=106.96  Aligned_cols=110  Identities=21%  Similarity=0.286  Sum_probs=96.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.+++++.++.++.+.|.+.+++.+||++ +++++|+++..|+. +...........++.++|.+.+.++.+++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   80 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA   80 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence            577899999999999999998999999999 78999999999995 5554433332357889999999999999999999


Q ss_pred             HHHHHhCCCCEEEEECC-CCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~-~~~~iGiit~~di~~  263 (308)
                      ++.|...+.+.+||+|+ +|+++|++|..|++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            99999999999999987 799999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.58  E-value=5.6e-14  Score=104.98  Aligned_cols=109  Identities=35%  Similarity=0.493  Sum_probs=95.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      ++.+++++.++.++.+.|.+.+.+.+||+++++++|+++..+++..+...+... ..++.++|..++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~-~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLDP-DTPVSEVMTAPPITIPPDATVFEAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCCc-cCCHHHHhCCCCeEECCCCcHHHHH
Confidence            577899999999999999988899999998899999999999964444333222 3578889988999999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +.|.+++..++||+++ |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            9999999999999986 99999999999984

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=3e-14  Score=106.43  Aligned_cols=108  Identities=25%  Similarity=0.368  Sum_probs=94.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.++.++.++.++++.|.+.+.+.+||++ +++++|+++..++. +.+.....  ..++.++|..++.++..++++.++
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~   78 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLI-RALAEGGP--DAPVRGVMRRDFPTVSPSATLDAV   78 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHH-HHHHhcCC--CCcHHHHhcCCCcEECCCCcHHHH
Confidence            467889999999999999888889999999 68999999999996 54443322  347888998899999999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.|..++...+||+|++|+++|++|..|+.+
T Consensus        79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999998799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=3.4e-14  Score=108.88  Aligned_cols=110  Identities=21%  Similarity=0.194  Sum_probs=91.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccc-------------ccccccccC
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADST-------------LVEKVMTPN  218 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~-------------~v~~~~~~~  218 (308)
                      .+.++++++++.++++.|.+++++.+||++ +|+++|+++..|++ ............             .....+..+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLK-GLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP   80 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhh-hhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence            477899999999999999988999999998 78999999999995 444322221111             122456678


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++
T Consensus        81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            899999999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=4.3e-14  Score=107.94  Aligned_cols=110  Identities=32%  Similarity=0.388  Sum_probs=95.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCc-----------cccccccccccCc
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP  219 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~-----------~~~~v~~~~~~~~  219 (308)
                      ++.++.++.++.+++++|.+.+.+.+||++ + |+++|+++..|++ ..+......           ...++.+++...+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDIL-KYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHH-HHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            467889999999999999998999999998 5 8999999999996 544332211           1346788888899


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      .++++++++.++++.|.+.+.+.+||+|++|+++|+||..||++
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=3.6e-14  Score=106.84  Aligned_cols=108  Identities=27%  Similarity=0.285  Sum_probs=92.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcc-----ccccccccccCceeecCCC
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD-----STLVEKVMTPNPECATIDT  226 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~-----~~~v~~~~~~~~~~v~~~~  226 (308)
                      ++.++++++++.++++.|.+.+++.+||++ +++++|+++..|++ +.........     ..++.++|.+.+.++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   80 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA   80 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHH-HHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence            477899999999999999999999999998 78999999999996 4443222111     3468888988999999999


Q ss_pred             CHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       227 ~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.++++.|.+.+  .+||+|++|+++|+||..|+++
T Consensus        81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            9999999998765  5999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.57  E-value=9.9e-14  Score=103.45  Aligned_cols=108  Identities=26%  Similarity=0.341  Sum_probs=95.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      ++.+++++.++.++++.|.+.+++.+||+++++++|+++..|++ +....+..  ..++.+++...+.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIA-HAIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence            57789999999999999999899999999888999999999996 55444332  2568888888999999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +.|...+.+.+||+|++|+++|+||..|+++
T Consensus        79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            9999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=7.6e-14  Score=104.40  Aligned_cols=109  Identities=30%  Similarity=0.511  Sum_probs=95.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.++.++.++.++.+.|.+.+.+.+||++ +++++|+++..|++ +.+..+... ..++.++|..++.++..++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGIDL-DTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHH-HHHhccCCC-ccCHHHhccCCCEEECCCCcHHHH
Confidence            467889999999999999988999999998 79999999999996 444433322 347888988899999999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.|.+++...+||+|++|+++|++|..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            99999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.57  E-value=4.7e-14  Score=104.97  Aligned_cols=105  Identities=30%  Similarity=0.291  Sum_probs=94.2

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      .++.++++++++.++.+.|.+.+.+.+||++ +|+++|+++..+++ ..     . ...++.++|...+.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~-----~-~~~~v~~~~~~~~~~v~~~~~l~~   74 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA-GK-----D-PDTTIEKVMTKNPITVNPKTSVAS   74 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh-cc-----c-ccccHHHHhcCCCeEECCCCCHHH
Confidence            4688899999999999999988888999998 79999999999995 21     1 134788899889999999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++.|..++...+||+|++|+++|++|..|+++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            999999999999999999999999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=1.1e-13  Score=103.49  Aligned_cols=110  Identities=30%  Similarity=0.459  Sum_probs=94.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      ++.+++++.++.++++.|.+.+.+.+||+++++++|+++..|++..+..........++.++|.+++.++.+++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   81 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA   81 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence            46778999999999999998889999999966999999999997444433222224578889988899999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++|.+.+...+||+|++ +++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            99999999999999864 9999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.57  E-value=9.8e-14  Score=103.51  Aligned_cols=108  Identities=23%  Similarity=0.381  Sum_probs=95.8

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      .++.+++.+.++.++.+.|.+.+.+.+||+++++++|+++..|+. +......  ...++.++|...+.++..++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~   78 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV   78 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence            467889999999999999998888999999888999999999995 5544333  2457889999999999999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++|.+++.+.+||+| +|+++|+||..|+++
T Consensus        79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            9999999999999998 899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=5.2e-14  Score=106.99  Aligned_cols=110  Identities=33%  Similarity=0.428  Sum_probs=95.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCC---------ccccccccccccCceee
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECA  222 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~---------~~~~~v~~~~~~~~~~v  222 (308)
                      ++.++.+++++.++.+.|.+.+++.+||++ +|+++|+++..+++ +.......         ....++.+++..++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v   80 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL-RAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHH-HHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence            577899999999999999999999999998 68999999999996 44433221         12457888998899999


Q ss_pred             cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ..++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.56  E-value=5.1e-14  Score=120.37  Aligned_cols=122  Identities=23%  Similarity=0.244  Sum_probs=111.1

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCcee
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (308)
                      .++++|.|..+...+.+++++.+..++..+.+.+++||+| ..+++|+||.+|+.      +..+ +.++..+|+++|.+
T Consensus       189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~~~-~t~ieKVMtknp~t  261 (432)
T COG4109         189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DKKP-STTIEKVMTKNPIT  261 (432)
T ss_pred             eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cCCC-CccHHHHhccCCee
Confidence            4689998888899999999999999999999999999999 88999999999996      3333 67999999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcC
Q 021709          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (308)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~  271 (308)
                      +.+.+++..+.+.|..-++.-+||+|++++++|+||+.|+++++-...++
T Consensus       262 v~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~q  311 (432)
T COG4109         262 VRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQ  311 (432)
T ss_pred             ecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999976544433

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.56  E-value=5.2e-14  Score=105.78  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=90.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-CcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CceeecCCCCH
Q 021709          153 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI  228 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l  228 (308)
                      ++.++++++++.++.+.|.+++ .+.+||++ +++++|+++..|++. ......  ...++.++|..  .+.++.+++++
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~-~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l   78 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRA-IPTSQW--AQTTVIQVMTPAAKLVTVLSEESL   78 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHH-HHHhhc--cccchhhhhcccccceEECCCCcH
Confidence            5778999999999999997665 88999998 789999999999964 433222  13467888864  35689999999


Q ss_pred             HHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       229 ~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      .++++.|.+++.+.+||+|++|+++|++|..||++
T Consensus        79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            99999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=4.3e-14  Score=103.04  Aligned_cols=93  Identities=16%  Similarity=0.262  Sum_probs=84.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++..+.+++++.++++.|.+.+.+.+||++ +|+++|+++..|+. ...                 .+.++.+++++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~-----------------~~~~v~~~~~l~~a   63 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLI-AKS-----------------EVVTATKRTTVSEC   63 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHh-cCC-----------------CcEEecCCCCHHHH
Confidence            577899999999999999989999999998 78999999999995 210                 18889999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.|.+++.+.+||+|++|+++|+||..||++
T Consensus        64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=4.6e-14  Score=105.89  Aligned_cols=110  Identities=25%  Similarity=0.346  Sum_probs=94.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC-CCccccccccccccCceeecCCCCHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~-~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      ++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++..++++.+.... ......++.++|...+.++.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD   81 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence            467899999999999999988888999998 789999999999964443322 111245788899888999999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++.|.+++...+||+|+ |+++|+||..||++
T Consensus        82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            999999999999999986 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.55  E-value=1.2e-13  Score=103.21  Aligned_cols=107  Identities=21%  Similarity=0.252  Sum_probs=92.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      ++.+++++.++.++.+.|.+.+.+.+||++ + ++++|+++..+++ +........  .++..++ .++.++..++++.+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~-~~~~~~~~~--~~~~~~~-~~~~~v~~~~~l~~   77 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLL-RALAEGEED--LDLRDLL-RPPLFVPESTPLDD   77 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHH-HHHHcCCCc--CCHHHHh-cCCeecCCCCcHHH
Confidence            578899999999999999988899999998 6 8999999999996 555433321  3566666 47889999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++.|..++.+++||+|++|+++|+||+.|+++
T Consensus        78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            999999999999999998899999999999974

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.55  E-value=9.2e-14  Score=102.90  Aligned_cols=103  Identities=23%  Similarity=0.289  Sum_probs=91.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.+++++.++.++++.|.+.+.+.++|++ +|+++|+++..|++ +..       ..++.++|.+.+.++..++++.++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~   73 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAA-RAS-------GGCCGDHAEPFKVTVSVDDDLRIV   73 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHH-Hhc-------ccchhhhcccCCEEECCCCCHHHH
Confidence            567889999999999999988889999998 79999999999995 331       124678888888889999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.|.+++...+||+|++|+++|+||..|+++
T Consensus        74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999998899999999999985

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.55  E-value=1.7e-13  Score=102.20  Aligned_cols=107  Identities=33%  Similarity=0.395  Sum_probs=94.4

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      +++.++.++.++.++++.|.+++.+.+||++ +|+++|+++..+++ +......    .++.++|..++.++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~----~~~~~~~~~~~~~v~~~~~l~~   76 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-KAVARDK----KSVEDIMTRNVITATPDEPIDV   76 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHH-HHHhhCc----cCHHHhcCCCCeEECCCCcHHH
Confidence            4678899999999999999988999999998 78999999999996 4443222    2478888889999999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++.|.+++...+||++++|+++|+||+.||++
T Consensus        77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          77 AARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            999999999999999998999999999999964

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=7.9e-14  Score=106.86  Aligned_cols=111  Identities=19%  Similarity=0.290  Sum_probs=90.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHH-----HHhcCCCccccccccccccCceee----
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR-----VISQNLPADSTLVEKVMTPNPECA----  222 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~-----~~~~~~~~~~~~v~~~~~~~~~~v----  222 (308)
                      ++.++.++.++.++++.|.+.+.+.+||++ +|+++|+++..|+...     +..........+++++|.+++..+    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            477899999999999999988999999998 7899999999999531     222112222457889997655443    


Q ss_pred             --cCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEEhhHHHH
Q 021709          223 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH  263 (308)
Q Consensus       223 --~~~~~l~~~~~~~~~~~~~~l~Vvd~~-~~~iGiit~~di~~  263 (308)
                        .+++++.++++.|.+++.+.+||+|++ |+++|+||+.||++
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              368899999999999999999999986 79999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=8e-14  Score=107.72  Aligned_cols=109  Identities=28%  Similarity=0.356  Sum_probs=93.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccc--------------------ccc
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV  211 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~--------------------~~v  211 (308)
                      ++.++.++.++.++++.|.+.+.+.+||++ +++++|+++..+++ +..........                    .++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI-RKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHH-HHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            477899999999999999988999999998 78999999999996 44433222111                    167


Q ss_pred             ccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       212 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      .++|.+++..+..++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            8888888999999999999999999999999999997 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.55  E-value=1.7e-13  Score=102.38  Aligned_cols=109  Identities=20%  Similarity=0.228  Sum_probs=93.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      ++++++++.++.++.+.|.+.+.+.++|++++++.|+++..|++ ............++.++|.+++.++++++++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLL-DAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHH-HHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            46778999999999999998888899999878899999999996 44433322224578889988899999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +.|.+++...+||+|+ |+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            9999999999999984 89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.54  E-value=1.2e-13  Score=102.74  Aligned_cols=106  Identities=25%  Similarity=0.339  Sum_probs=93.7

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      .++..++++.++.++++.|.+.++..+||++ +++++|+++..|++ .....     ..++.++|...+.++++++++.+
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~-----~~~v~~~~~~~~~~v~~~~~~~~   75 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLE-QAYKE-----AKSLEDIMLEDVFTVQPDASLRD   75 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHH-HHhhc-----CCcHhHhhcCCceEECCCCcHHH
Confidence            4578899999999999999988999999998 78999999999995 43221     23678888889999999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++.|...+..++||+|++|+++|++|..|+++
T Consensus        76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            999999999999999998899999999999974

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.54  E-value=1.8e-13  Score=102.10  Aligned_cols=109  Identities=33%  Similarity=0.367  Sum_probs=94.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      ++..+.++.++.++.+.|.+.+.+.+||+++++++|+++..|+. +........ ..++.++|..++.++..++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~   79 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIR-RVPAEGREA-TVLVGDVMTRDPVTASPDETLRDAL   79 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHH-HHHhcCccc-ccCHHHhccCCCeEECCCCCHHHHH
Confidence            57789999999999999998889999999889999999999996 444332221 2356788888999999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +.|.+++.+.+||+|++|+++|+||..||++
T Consensus        80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            9999999999999998899999999999985

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.3e-13  Score=107.09  Aligned_cols=109  Identities=23%  Similarity=0.370  Sum_probs=93.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCc-----------------------cc
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-----------------------DS  208 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~-----------------------~~  208 (308)
                      ++.++.+++++.++++.|.+.+.+.+||++ +++++|+++..|++ +........                       ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLA-FAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHH-HHhhcccccccchhhhhhhhhccccccccccccc
Confidence            467889999999999999998999999999 79999999999996 443321111                       13


Q ss_pred             cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      .++.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus        81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4788899888999999999999999999999999999986 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.54  E-value=5.8e-14  Score=108.95  Aligned_cols=110  Identities=27%  Similarity=0.409  Sum_probs=94.7

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC----------------------Cccc
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------------------PADS  208 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~----------------------~~~~  208 (308)
                      .++.+++++.++.++++.|.+.+.+++||++ +++++|+++..|+. +......                      ....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL-RRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHH-HHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            5688899999999999999999999999999 78999999999996 3322111                      1123


Q ss_pred             cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      .++.++|.+++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||+.|+++
T Consensus        81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            467888888899999999999999999999999999999 899999999999985

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.54  E-value=1.5e-13  Score=104.18  Aligned_cols=110  Identities=25%  Similarity=0.361  Sum_probs=94.7

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCC----------ccccccccccccCceee
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA  222 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~~~~~~~~~~v  222 (308)
                      ++.++.++.++.++++.|.+.+...+||+++++++|+++..++. ........          ....++.++|.+++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLK-LASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHH-HhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence            46788999999999999999889999999989999999999996 44332111          01346778888899999


Q ss_pred             cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ..++++.++++.|.+.+.+.+||+|++|+++|+||..||++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999999999999998899999999999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.53  E-value=1.5e-13  Score=102.27  Aligned_cols=109  Identities=24%  Similarity=0.303  Sum_probs=91.3

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      ++.++.++.++.++.+.|.+.+.+.+||+++++++|+++..|+. +...........++.++|.+++.++++++++.++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLL-DALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHH-HHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence            46788999999999999999999999999888999999999996 54433332223468888888899999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~  264 (308)
                      ++|.. .. .+||++++|+++|+||..||+++
T Consensus        81 ~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          81 ELLDR-GN-VAVVVDEGGKFVGIITRADLLKY  110 (110)
T ss_pred             HHHHh-CC-ceeEEecCCeEEEEEeHHHhhcC
Confidence            99988 33 47889888999999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.6e-13  Score=102.52  Aligned_cols=108  Identities=25%  Similarity=0.293  Sum_probs=93.6

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.+++++.++.++++.|.+.+.+.+||++ +|+++|+++..|++ .+...... ...++.++|.+++.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            467899999999999999988999999998 78999999999995 44332211 1346888898899999999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.|.+++...+||+|+ |+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            99999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.53  E-value=2e-13  Score=125.77  Aligned_cols=166  Identities=17%  Similarity=0.191  Sum_probs=132.4

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      +...+++++|+|+.++..++.+.++.++.+.+.+++++++||.+  .+.++|++..+|++..........   .....+ 
T Consensus       203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~---~~~~~~-  278 (429)
T COG1253         203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDL---DLRVLV-  278 (429)
T ss_pred             cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcccc---chhhcc-
Confidence            35678899999999999999999999999999999999999998  568999999999985554332211   111222 


Q ss_pred             cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCCc------------chhhhH
Q 021709          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE------------AASTMM  284 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~~------------~~~~~~  284 (308)
                      .+|..|+++.++.+++++|.+.+.+-..|+|+.|.+.|+||..||++.+++..+...+..++            ++....
T Consensus       279 ~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~  358 (429)
T COG1253         279 RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVP  358 (429)
T ss_pred             cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEecccc
Confidence            38999999999999999999999999999999999999999999999999977765543111            223333


Q ss_pred             HHHHHhhccCCCC-CchhhhccccC
Q 021709          285 QKFWDSAMALSPN-DDEEDNRRFYA  308 (308)
Q Consensus       285 ~~~~~~~~~~~~~-~~~~~~~~~~~  308 (308)
                      ....+....++.. +.+|+|.+||.
T Consensus       359 l~e~~~~l~~~~~~~~~~~Ti~G~v  383 (429)
T COG1253         359 LEELEELLGIDLDEEEDYDTIAGLV  383 (429)
T ss_pred             HHHHHHHhCCCCcccCCcccHHHHH
Confidence            5666677777754 44799999973

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.7e-13  Score=105.23  Aligned_cols=111  Identities=23%  Similarity=0.218  Sum_probs=92.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC------------CCccccccccccccCc
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN------------LPADSTLVEKVMTPNP  219 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~------------~~~~~~~v~~~~~~~~  219 (308)
                      ++.++.++.++.++++.|.+.+.+.+||++ +++++|++|..|++..+....            ......++.++|..++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV   81 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence            467889999999999999999999999998 789999999999963322210            0011346788898889


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEEC--CCCcEEEEEEhhHHHH
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITH  263 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd--~~~~~iGiit~~di~~  263 (308)
                      .++.+++++.++++.|.+.+...+||++  ++|+++|+||..||++
T Consensus        82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            9999999999999999999999999984  4699999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.52  E-value=3.2e-13  Score=100.09  Aligned_cols=105  Identities=27%  Similarity=0.383  Sum_probs=93.1

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      +++.+++.+.++.++.+.|.+.+.+.+||+++++++|+++..|++ ..     . ...++.++|...+.++..++++.++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~-~~-----~-~~~~~~~~~~~~~~~v~~~~~l~~~   74 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLL-GK-----D-PDETVEEIMSKDLVVAVPEMDIMDA   74 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh-cc-----C-ccccHHHhCCCCCeEECCCCCHHHH
Confidence            467889999999999999988888889998889999999999995 21     1 1346888898889999999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.|.+++...+||+|++|+++|+|+..||++
T Consensus        75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.3e-13  Score=104.75  Aligned_cols=111  Identities=28%  Similarity=0.334  Sum_probs=94.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC---CC-----ccccccccccccCceeec
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---LP-----ADSTLVEKVMTPNPECAT  223 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~---~~-----~~~~~v~~~~~~~~~~v~  223 (308)
                      ++.+++++.++.++++.|.+.+.+.+||++ +|+++|+++..|+++......   ..     ....++.++|..++.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence            577899999999999999988999999999 799999999999963321110   00     123467788888899999


Q ss_pred             CCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      .++++.++++.|..++.+.+||+|++|+++|++|..|+++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            9999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2e-13  Score=103.76  Aligned_cols=110  Identities=23%  Similarity=0.403  Sum_probs=94.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCC--------C--ccccccccccccCceee
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL--------P--ADSTLVEKVMTPNPECA  222 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~--------~--~~~~~v~~~~~~~~~~v  222 (308)
                      ++.+++++.++.++.+.|.+.+++.+||+++|+++|+++..++. +.+....        +  ....++.++|..++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV   80 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHH-HHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence            47789999999999999999899999999988999999999996 4433211        0  01236788888899999


Q ss_pred             cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ..++++.++++.|..++...+||+|++|+++|++|+.|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            99999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2.1e-13  Score=103.52  Aligned_cols=109  Identities=31%  Similarity=0.371  Sum_probs=93.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCC----------CccccccccccccCceee
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL----------PADSTLVEKVMTPNPECA  222 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~----------~~~~~~v~~~~~~~~~~v  222 (308)
                      ++.++.++.++.++.+.|.+.+.+.+||+++|+++|+++..++. +......          .....++.++|..++.++
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIA-DALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI   80 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHH-HhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence            46788999999999999998899999999989999999999996 4332211          112346778888899999


Q ss_pred             cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ..++++.++++.|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            99999999999999999999999997 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.52  E-value=1.7e-13  Score=131.14  Aligned_cols=128  Identities=22%  Similarity=0.234  Sum_probs=108.3

Q ss_pred             HHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccccc
Q 021709          137 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM  215 (308)
Q Consensus       137 ~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~  215 (308)
                      +.+...+++++|.  +++.++++++++.++.+.+.+++.+.+||+| +++++|+++.+|+.+.+... ......++.++|
T Consensus       442 ~~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~-~~~~~~~v~dim  518 (574)
T PRK01862        442 ERLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK-RDTTDKTAADYA  518 (574)
T ss_pred             hHHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-cccccchHHHhc
Confidence            3445567889987  6788999999999999999999999999999 78999999999996433322 222235788999


Q ss_pred             ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCC--CcEEEEEEhhHHHHHHHH
Q 021709          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       216 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--~~~iGiit~~di~~~~~~  267 (308)
                      ++++.++++++++.+++++|.+++.+.+||+|++  ++++|+||++|+++++..
T Consensus       519 ~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        519 HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999999999999876  589999999999987654

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.52  E-value=3.6e-13  Score=99.42  Aligned_cols=102  Identities=27%  Similarity=0.389  Sum_probs=91.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      ++.++.+++++.++++.|.+.+.+.+||+++++++|+++..+++ ...      ...++.++|.+.+.+++.++++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~-~~~------~~~~~~~~~~~~~~~v~~~~~l~~~~   74 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR-RAH------PNRLVADAMTREVVTISPEASLLEAK   74 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh-ccc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence            46778999999999999998888999999988999999999995 321      13467888988999999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  262 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~  262 (308)
                      +.|..++...+||+|+ |+++|+||..|++
T Consensus        75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          75 RLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             HHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence            9999999999999996 9999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.51  E-value=7.2e-13  Score=115.70  Aligned_cols=190  Identities=13%  Similarity=0.128  Sum_probs=137.2

Q ss_pred             HHHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHH
Q 021709           30 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAE  105 (308)
Q Consensus        30 ~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~  105 (308)
                      .++.+...+.+.+++++|.+  .+++++++.++.++++.+.+++++++||++ + ++++|+++..|++......      
T Consensus        56 ~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~------  129 (292)
T PRK15094         56 DMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD------  129 (292)
T ss_pred             HHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc------
Confidence            44445667888899999987  689999999999999999999999999997 3 6899999999997431100      


Q ss_pred             hHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CC
Q 021709          106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN  184 (308)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~  184 (308)
                                                       .....+.++|.   ++.++++++++.++++.|.+++.+.+||+| .|
T Consensus       130 ---------------------------------~~~~~l~~l~r---~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G  173 (292)
T PRK15094        130 ---------------------------------AEAFSMDKVLR---QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG  173 (292)
T ss_pred             ---------------------------------CCcCCHHHHcC---CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCC
Confidence                                             00112445564   456899999999999999999999999999 78


Q ss_pred             EEEEEeeHHHHHHHHHhcCCCccccccc-ccc--ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHH
Q 021709          185 KPRGILTSKDILMRVISQNLPADSTLVE-KVM--TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI  261 (308)
Q Consensus       185 ~~~Givt~~dl~~~~~~~~~~~~~~~v~-~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di  261 (308)
                      .++|+||..|++..+...-.+.....-. .+.  ...-..++...++.++.+.+.- +   +|   + +   ++-|...+
T Consensus       174 ~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~-~---l~---~-~---~~~Tl~G~  242 (292)
T PRK15094        174 GVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGT-H---FS---D-E---EVDTIGGL  242 (292)
T ss_pred             CEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhCC-C---CC---C-C---CCccHHHH
Confidence            8999999999986666432222111111 121  2345778889999998888733 1   22   1 1   45577777


Q ss_pred             HHHHHHHhcCC
Q 021709          262 THAAVATVGNT  272 (308)
Q Consensus       262 ~~~~~~~~~~~  272 (308)
                      +-..++..+..
T Consensus       243 i~~~l~~iP~~  253 (292)
T PRK15094        243 VMQAFGHLPAR  253 (292)
T ss_pred             HHHHhCcCCCC
Confidence            66666655553

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.50  E-value=3.6e-13  Score=100.29  Aligned_cols=106  Identities=32%  Similarity=0.437  Sum_probs=91.7

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecC-CCCHH
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIV  229 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~-~~~l~  229 (308)
                      +++.++..+.++.++.+.|.+.+.+.+||++ +|+++|+++..++. ...    . ...++.++|...+..+.. ++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~----~-~~~~v~~~~~~~~~~~~~~~~~l~   75 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR-FET----D-LDKPVSEVMTPENLLTTVEGTSLE   75 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee-ecc----c-CCCCHHHhcccCceEEecCCCCHH
Confidence            4578899999999999999988999999998 78999999999984 221    1 234788888877777777 99999


Q ss_pred             HHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          230 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       230 ~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            9999999999999999998899999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.50  E-value=3.8e-13  Score=101.13  Aligned_cols=106  Identities=27%  Similarity=0.343  Sum_probs=91.4

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecC--C
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--D  225 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~--~  225 (308)
                      .++.++.+++++.++.+.|.+.+.+.+||+++    ++++|+++..|++ ....    . ..++.++|...+.++..  +
T Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~~----~-~~~v~~~~~~~~~~~~~~~~   75 (114)
T cd04602           2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLTD----S-ETPLSEVMTPREVLVVAPTG   75 (114)
T ss_pred             CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhhc----c-CCCHHHhcCCCceEEECCCC
Confidence            35778899999999999998888889999983    7999999999985 3221    1 24688899888888866  9


Q ss_pred             CCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       226 ~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +++.++++.|..++...+||+|++|+++|+||..||++
T Consensus        76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999999999998999999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.50  E-value=2.6e-13  Score=101.09  Aligned_cols=101  Identities=21%  Similarity=0.271  Sum_probs=88.0

Q ss_pred             eCCCCcHHHHHHHHHHcC-----CcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHH
Q 021709          157 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD  230 (308)
Q Consensus       157 v~~~~~~~~~~~~~~~~~-----~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  230 (308)
                      +.++.++.++++.|.+++     +..+||++ +++++|+++.++++ .     .. ...++.+++..++.++.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~-~-----~~-~~~~v~~~~~~~~~~i~~~~~~~~   74 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL-L-----AD-PDTPVSDIMDTDVISVSADDDQEE   74 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHh-c-----CC-CcchHHHHhCCCCeEEcCCCCHHH
Confidence            567899999999998766     46789998 78999999999996 2     11 134688888888999999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709          231 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (308)
Q Consensus       231 ~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~  264 (308)
                      +++.|...+...+||+|++|+++|+||..|++++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            9999999999999999988999999999999975

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.50  E-value=3e-13  Score=125.89  Aligned_cols=138  Identities=25%  Similarity=0.292  Sum_probs=112.1

Q ss_pred             cCCCCCChhHHHHHHHHHhcC-CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFR-PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDI  195 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl  195 (308)
                      -|..+++.+...+...+...+ ...++.+.  .++.++++++++.+++++|.+++++.+||+++    ++++|++|.+|+
T Consensus        74 GglGvi~~~~~~e~~~~~v~kvk~~e~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL  151 (495)
T PTZ00314         74 GGIGVIHNNCSIEEQVEEVRKVKRFENGFI--MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDI  151 (495)
T ss_pred             CCeEEecCCCCHHHHHHHHhhccccccccc--cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHH
Confidence            355556655444444433333 33556666  67899999999999999999999999999984    799999999999


Q ss_pred             HHHHHhcCCCcccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          196 LMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       196 ~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      . ..     .....++.++|.+  ++.++.+++++.+++++|.+++...+||+|++++++|+||++||++...
T Consensus       152 ~-~~-----~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        152 D-FV-----KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             h-hc-----ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence            4 21     1124579999987  8899999999999999999999999999999999999999999998654

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.50  E-value=1.1e-12  Score=119.96  Aligned_cols=163  Identities=13%  Similarity=0.148  Sum_probs=127.1

Q ss_pred             HHHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHH
Q 021709           30 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE  105 (308)
Q Consensus        30 ~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~  105 (308)
                      .++.+..++.+.+++++|.+  ++++++.++++.++++.+.+++++++||+++  ++++|+++.+|++.....       
T Consensus       180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------  252 (408)
T TIGR03520       180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------  252 (408)
T ss_pred             HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------
Confidence            44455667888899999986  7899999999999999999999999999974  689999999999743100       


Q ss_pred             hHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CC
Q 021709          106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN  184 (308)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~  184 (308)
                                                        ....+.+++   +++.++++++++.++++.|++++.+.++|+| .|
T Consensus       253 ----------------------------------~~~~l~~~~---~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G  295 (408)
T TIGR03520       253 ----------------------------------KNFDWQSLL---REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG  295 (408)
T ss_pred             ----------------------------------CCCCHHHHc---CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC
Confidence                                              011234455   3588999999999999999999999999999 79


Q ss_pred             EEEEEeeHHHHHHHHHhcCCCcccccccccc---ccCceeecCCCCHHHHHHHHHh
Q 021709          185 KPRGILTSKDILMRVISQNLPADSTLVEKVM---TPNPECATIDTPIVDALHIMHD  237 (308)
Q Consensus       185 ~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~  237 (308)
                      ...|+||..|++..+..+-.+..+ +-.+.+   ......++...++.++.+.|.-
T Consensus       296 ~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       296 GTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             CEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccCHHHHHHHhCC
Confidence            999999999999777654332211 112222   2455778889999999988844

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.8e-13  Score=96.75  Aligned_cols=91  Identities=20%  Similarity=0.278  Sum_probs=82.3

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      .++++++++++.+|.+.|.+++++++||++ + |+++|+++..|+.+.                                
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~--------------------------------   49 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI--------------------------------   49 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence            467899999999999999999999999998 4 799999999998642                                


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~  196 (308)
                                              ..+.++.+++++.++++.|.+++.+++||++ + |+++|++|.+|++
T Consensus        50 ------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~   96 (98)
T cd04618          50 ------------------------LRLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL   96 (98)
T ss_pred             ------------------------eeeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence                                    1177899999999999999999999999999 6 8999999999995

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.48  E-value=3e-13  Score=125.39  Aligned_cols=175  Identities=18%  Similarity=0.162  Sum_probs=138.1

Q ss_pred             hccCCcccccccccccCceEEeCCCcHHHHHHHhHh-----CCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhH
Q 021709           34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKG  107 (308)
Q Consensus        34 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~-----~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~  107 (308)
                      .-..+.+.+++++|.+++++++++.++.++++.|.+     ++...++|+| +++++|+++.++++..            
T Consensus       124 ~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a------------  191 (449)
T TIGR00400       124 LLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA------------  191 (449)
T ss_pred             HHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC------------
Confidence            334556678999999999999999999999999975     4567788887 6899999999998632            


Q ss_pred             HHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEE
Q 021709          108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP  186 (308)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~  186 (308)
                                                     ....++.++|.  +++.++++++++.++++.|.+++...+||+| +|++
T Consensus       192 -------------------------------~~~~~v~~im~--~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~l  238 (449)
T TIGR00400       192 -------------------------------KPEEILSSIMR--SSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRL  238 (449)
T ss_pred             -------------------------------CCCCcHHHHhC--CCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeE
Confidence                                           01234677776  6788999999999999999999999999999 8999


Q ss_pred             EEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          187 RGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       187 ~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      +|+||.+|++..+..+ .      .+++|.....+..+++++.+++..|.+++...++|.    .+.|++| ..++...
T Consensus       239 vGiIt~~Dil~~l~~~-~------~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f  305 (449)
T TIGR00400       239 VGIVTVDDIIDVIQSE-A------TEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNY  305 (449)
T ss_pred             EEEEEHHHHHHHHHhh-h------HHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHH
Confidence            9999999997444322 1      245665555555567888999999999999998885    5777777 5555543

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.48  E-value=9.2e-13  Score=97.33  Aligned_cols=100  Identities=26%  Similarity=0.241  Sum_probs=88.6

Q ss_pred             eEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHH
Q 021709          155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI  234 (308)
Q Consensus       155 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~  234 (308)
                      .+++++.++.++++.|.+.+.+.+||+++++++|+++..|++ ...       ..++.++|...+.+++++.++.++++.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~   75 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIE-NAT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV   75 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHh-hhc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence            567899999999999999899999999889999999999995 321       124677888889999999999999999


Q ss_pred             HHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          235 MHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       235 ~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      |.+++...+||+| +|+++|+||..|+++
T Consensus        76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            9999999999998 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.47  E-value=6.8e-13  Score=122.77  Aligned_cols=115  Identities=30%  Similarity=0.355  Sum_probs=102.0

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C---CEEEEEeeHHHHHHHHHhcCCCccccccccccc-c
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P  217 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~-~  217 (308)
                      .+.+.|.  .++.+++++.++.++++.|.+++++.+||++ +   ++++|++|.+|++ ...    . ...++.++|. .
T Consensus        81 ~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~-~~~----~-~~~~V~dvm~~~  152 (450)
T TIGR01302        81 RAENGII--SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR-FVK----D-KGKPVSEVMTRE  152 (450)
T ss_pred             cccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh-hhh----c-CCCCHHHhhCCC
Confidence            3566666  6899999999999999999999999999999 5   6999999999995 321    1 1457899998 4


Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++..
T Consensus       153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            999999999999999999999999999999999999999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.47  E-value=1.6e-12  Score=97.81  Aligned_cols=109  Identities=34%  Similarity=0.444  Sum_probs=95.9

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      +.+.++.++.++.++...|.++++..+|+.+.++++|++|.+|++ ......... ..++..+|..++.++.+++++.++
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~-~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~   84 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL-RALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEA   84 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhccCCc-cccHHHhccCCcEEECCCCCHHHH
Confidence            579999999999999999999999999999977999999999996 444333322 126889998899999999999999


Q ss_pred             HHHHHh-CCCCEEEEECCCC-cEEEEEEhhHHH
Q 021709          232 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT  262 (308)
Q Consensus       232 ~~~~~~-~~~~~l~Vvd~~~-~~iGiit~~di~  262 (308)
                      ++.|.. ++.+.+||+|+++ +++|++|..|++
T Consensus        85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            999999 7999999999886 999999999974

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.5e-12  Score=96.72  Aligned_cols=110  Identities=34%  Similarity=0.440  Sum_probs=93.9

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.+++.+.++.++.+.|.+.+.+.+||++ +++++|+++..|++ .............+.++|..++.++..++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA   80 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHH-HHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence            467789999999999999998889999998 68999999999996 4443333221223667788889999999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++.|...+...+||+|++|+++|+++..|+++
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.46  E-value=1.4e-12  Score=121.34  Aligned_cols=108  Identities=27%  Similarity=0.284  Sum_probs=95.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CceeecCCC
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDT  226 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~  226 (308)
                      .+.++++++++.++++.|.+++.+.+||+++    ++++|+||..|+. ..   . .....+++++|++  ++.++.+++
T Consensus       106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~---~-~~~~~~V~dIMt~~~~~itv~~d~  180 (502)
T PRK07107        106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS---R-MSLDTKVKDFMTPFEKLVTANEGT  180 (502)
T ss_pred             CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc---c-cCCCCCHHHHhCCCCCeEEECCCC
Confidence            4579999999999999999999999999984    7999999999993 32   1 1235689999986  778899999


Q ss_pred             CHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          227 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       227 ~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      ++.+++++|.++++..+||+|++|+++|+||..||++..
T Consensus       181 ~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        181 TLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            999999999999999999999899999999999999854

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.45  E-value=1.5e-12  Score=121.66  Aligned_cols=115  Identities=27%  Similarity=0.332  Sum_probs=102.7

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc-cCcee
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPEC  221 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~-~~~~~  221 (308)
                      +.++|.  .++.+++++.++.++++.|.+++++.+||++ +++++|++|.+|+. ...    . ...++.++|. .++.+
T Consensus        89 ~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~-~~~----~-~~~~V~dim~~~~~v~  160 (486)
T PRK05567         89 SESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR-FET----D-LSQPVSEVMTKERLVT  160 (486)
T ss_pred             hhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhh-hcc----c-CCCcHHHHcCCCCCEE
Confidence            567776  7899999999999999999999999999999 89999999999994 321    1 2357889998 78899


Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      +..++++.++++.|.+++.+.+||+|++|+++|+||..||++...
T Consensus       161 v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        161 VPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             ECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence            999999999999999999999999999999999999999998753

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.44  E-value=1.3e-12  Score=98.94  Aligned_cols=109  Identities=25%  Similarity=0.320  Sum_probs=93.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC---------CccccccccccccCceee
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECA  222 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~---------~~~~~~v~~~~~~~~~~v  222 (308)
                      ++.+++++.++.++.+.|.+.+.+.+||++ +++++|+++..+++ .......         .....++.++|...+.++
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i   80 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR-DASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV   80 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHH-HHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence            467889999999999999988999999999 69999999999996 4332110         112346788888899999


Q ss_pred             cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ..++++.++++.|...+...+||+|. |+++|++|..||++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            99999999999999999999999986 99999999999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.44  E-value=1.5e-12  Score=120.76  Aligned_cols=120  Identities=19%  Similarity=0.255  Sum_probs=104.4

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHH-----cCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~  213 (308)
                      ...+++++|+  +++.+++++.++.++.+.+.+     .+...++|++ +++++|+++.+|++.      .. ...++++
T Consensus       129 ~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~------a~-~~~~v~~  199 (449)
T TIGR00400       129 SDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL------AK-PEEILSS  199 (449)
T ss_pred             CcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc------CC-CCCcHHH
Confidence            4567899998  789999999999999999975     3456788888 889999999999962      11 2457999


Q ss_pred             ccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                      +|.+++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++.+...
T Consensus       200 im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       200 IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999877653

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.44  E-value=3.3e-12  Score=119.07  Aligned_cols=110  Identities=27%  Similarity=0.286  Sum_probs=98.6

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccC--ceeecCC
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PECATID  225 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~  225 (308)
                      ++++++++++++.++.+.|.+++++.+||+++    ++++|+||.+|+. ...     ....++.++|.+.  +.++.++
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvtv~~~  181 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVTAPAG  181 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEEECCC
Confidence            68999999999999999999999999999984    7999999999994 321     1256899999876  7799999


Q ss_pred             CCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       226 ~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      +++.+++++|.+++...+||+|++++++|+||+.||+++...
T Consensus       182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            999999999999999999999999999999999999987764

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.44  E-value=2.1e-12  Score=96.64  Aligned_cols=106  Identities=15%  Similarity=0.107  Sum_probs=88.9

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++++++++.+|++.|.+++.+.+||++ +++++|+++..|+.+...                               
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-------------------------------   50 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-------------------------------   50 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-------------------------------
Confidence            467899999999999999999999999998 589999999999864200                               


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                              ......++.++|.  .++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        51 --------~~~~~~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~  109 (111)
T cd04603          51 --------NDYETLKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL  109 (111)
T ss_pred             --------ccccccChhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence                    0011224666775  6788999999999999999999999999999 79999999999995

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.43  E-value=3.6e-12  Score=119.20  Aligned_cols=172  Identities=22%  Similarity=0.264  Sum_probs=128.1

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (308)
                      .++++|.+++++++++.++.+++++|.++++..+||++ +++++|+++..|+....                        
T Consensus        88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------------------------  143 (486)
T PRK05567         88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------------------------  143 (486)
T ss_pred             hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------------------------
Confidence            35778889999999999999999999999999999998 68999999999985210                        


Q ss_pred             cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~  199 (308)
                                        ....++.++|. ..+++++++++++.++++.|.+++.+.+||++ +++++|++|.+|+++..
T Consensus       144 ------------------~~~~~V~dim~-~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        144 ------------------DLSQPVSEVMT-KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             ------------------cCCCcHHHHcC-CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence                              01123556664 25789999999999999999999999999999 89999999999997443


Q ss_pred             HhcCCC---ccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEC-CCCcEEEEEEhhHHHHH
Q 021709          200 ISQNLP---ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITHA  264 (308)
Q Consensus       200 ~~~~~~---~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~~~~iGiit~~di~~~  264 (308)
                      ......   .....+...|...     + .+ .+..+.|.+.+...+ ++| .+|+..|+++..+.++.
T Consensus       205 ~~p~a~~d~~g~l~V~aai~~~-----~-~~-~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        205 EFPNACKDEQGRLRVGAAVGVG-----A-DN-EERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             hCCCcccccCCCEEEEeecccC-----c-ch-HHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence            221110   0122344444432     2 12 677778888899866 555 46888777765555553

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.43  E-value=1.7e-12  Score=115.89  Aligned_cols=119  Identities=14%  Similarity=0.136  Sum_probs=100.0

Q ss_pred             ccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        39 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      ...+++++|.+  +++++++++++.+|++.|.+++...+||++ +|+++|+++..|+.+.....                
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~----------------  263 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG----------------  263 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC----------------
Confidence            45578999987  899999999999999999998888888887 78999999999986421100                


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHH
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI  195 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl  195 (308)
                                           ......++.++|.  +++.++.+++++.++++.|.+++.+.+||+++++++|++|.+|+
T Consensus       264 ---------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di  320 (326)
T PRK10892        264 ---------------------IDLRQASIADVMT--PGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL  320 (326)
T ss_pred             ---------------------CCcccCCHHHhcC--CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence                                 0011245778887  68999999999999999999999999999998899999999999


Q ss_pred             H
Q 021709          196 L  196 (308)
Q Consensus       196 ~  196 (308)
                      +
T Consensus       321 l  321 (326)
T PRK10892        321 L  321 (326)
T ss_pred             H
Confidence            7

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.4e-12  Score=100.11  Aligned_cols=109  Identities=30%  Similarity=0.378  Sum_probs=93.1

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCC---------------------------
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP---------------------------  205 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~---------------------------  205 (308)
                      ++.+++++.++.++.+.|.+.+++.+||+++++++|+++..|++ +.+.....                           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDIL-KLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHH-HHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            57889999999999999999999999999888999999999996 44432110                           


Q ss_pred             -----ccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          206 -----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       206 -----~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                           ....++.++|...+.+++.++++.++++.|...+...+||+++ |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                 0134577788889999999999999999999999999999986 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.2e-12  Score=98.32  Aligned_cols=94  Identities=26%  Similarity=0.359  Sum_probs=81.4

Q ss_pred             CCCCCcCEEEEECCC-CcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee
Q 021709            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE   79 (308)
Q Consensus         1 m~~~~~~~~~V~~~~-~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd   79 (308)
                      |.+++++.+||++++ ++++|++|..|+++.+..........+++++|.+++.++++++++.++++.|.+++...+||++
T Consensus        19 ~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd   98 (114)
T cd04630          19 MKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE   98 (114)
T ss_pred             HHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee
Confidence            456788899999987 8999999999998655554334445689999988999999999999999999999999999998


Q ss_pred             CCeEEEEEeHHHHHH
Q 021709           80 NGEVIALLDIAKCLY   94 (308)
Q Consensus        80 ~~~~vGivs~~dll~   94 (308)
                      +|+++|+++..++++
T Consensus        99 ~~~~~Gvi~~~dl~~  113 (114)
T cd04630          99 NNELIGIISLTDIFL  113 (114)
T ss_pred             CCEEEEEEEHHHhhc
Confidence            899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.42  E-value=3.7e-12  Score=94.38  Aligned_cols=99  Identities=16%  Similarity=0.203  Sum_probs=87.3

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCC
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP  227 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~  227 (308)
                      +....+.++.++.++.+.+.+.+.+.+||+++    ++++|+++.+|+. .....           +|.+++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~-~~~~~-----------~m~~~~~~v~~~~~   69 (105)
T cd04591           2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLV-VALKN-----------YIDPSPFTVSPRTS   69 (105)
T ss_pred             CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHH-HHHHH-----------hccCCCceECCCCc
Confidence            45678899999999999999888888999984    7899999999995 43322           67778899999999


Q ss_pred             HHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       228 l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +.++++.|..++.+.+||++ +|+++|+||+.|+++
T Consensus        70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            99999999999999999995 799999999999985

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.9e-12  Score=98.25  Aligned_cols=116  Identities=23%  Similarity=0.276  Sum_probs=88.3

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      +++.++++++++.+|++.|.+++++.+||++ +|+++|+++..|++.........                         
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~-------------------------   55 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN-------------------------   55 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc-------------------------
Confidence            4678999999999999999999999999997 68999999999998542211000                         


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                        .........+.   ....|.  .++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        56 --~~~~~~~~~~~---~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~  118 (120)
T cd04641          56 --NLDLTVGEALE---RRSQDF--EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL  118 (120)
T ss_pred             --cccCCHHHHHh---hcccCC--CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence              00000000000   112232  5678999999999999999999999999999 68999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=3.9e-12  Score=92.63  Aligned_cols=91  Identities=25%  Similarity=0.345  Sum_probs=82.7

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      +++++.++.++.+|++.|.++++..+||++ +|+++|+++..++.+.                                 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~---------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK---------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence            577899999999999999999999999998 6899999999998632                                 


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                             ..+.++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus        49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~   94 (96)
T cd04614          49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL   94 (96)
T ss_pred             -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence                                   2378899999999999999999999999998 68999999999995

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.42  E-value=1.6e-12  Score=112.84  Aligned_cols=112  Identities=27%  Similarity=0.370  Sum_probs=97.9

Q ss_pred             CCcccccCCCCc-eeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709          142 PSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (308)
Q Consensus       142 ~~v~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~  219 (308)
                      .++.++|.  ++ +.++.++.++.++++.|.+.+.+.+||++ +|+++|+++..|++ +........ ..++.++|.+++
T Consensus       155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~-~~~~~~~~~-~~~v~~im~~~~  230 (268)
T TIGR00393       155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR-RALLGGGSL-KSEVRDFMTLGP  230 (268)
T ss_pred             hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHH-HHHhcCCcc-cCcHHHhCCCCC
Confidence            45788887  55 88999999999999999988899999999 89999999999996 444332222 457999999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEE
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD  257 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit  257 (308)
                      .++.+++++.++++.|.+.+...+||+|++|+++|+|+
T Consensus       231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       231 KTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             eEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            99999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.42  E-value=8.9e-12  Score=115.32  Aligned_cols=180  Identities=16%  Similarity=0.165  Sum_probs=129.6

Q ss_pred             CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      ....+++++|.++++++.+++++.+++++|.++++..+||+| +++++|+|+..|+...                     
T Consensus        86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---------------------  144 (479)
T PRK07807         86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---------------------  144 (479)
T ss_pred             HhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---------------------
Confidence            344567889999999999999999999999999999999998 6899999999997311                     


Q ss_pred             hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl  195 (308)
                                            ....++.++|.  .++.++++++++.+++++|.+++.+.+||+| +++++|+||.+|+
T Consensus       145 ----------------------~~~~~V~diMt--~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DI  200 (479)
T PRK07807        145 ----------------------DRFTQVRDVMS--TDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGA  200 (479)
T ss_pred             ----------------------ccCCCHHHhcc--CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence                                  01134677887  7899999999999999999999999999999 8999999999999


Q ss_pred             HHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEEhhHHHHHHHHHhcC
Q 021709          196 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHAAVATVGN  271 (308)
Q Consensus       196 ~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~iGiit~~di~~~~~~~~~~  271 (308)
                      + +.....  +....-...+-..  .+.......+.++.|.+.+.+.+ ++|. +|.   -....+.++.+....++
T Consensus       201 l-~~~~~~--~~~~~~g~l~V~a--av~~~~~~~~~a~~Lv~aGvd~i-~~D~a~~~---~~~~~~~i~~ik~~~p~  268 (479)
T PRK07807        201 L-RATIYT--PAVDAAGRLRVAA--AVGINGDVAAKARALLEAGVDVL-VVDTAHGH---QEKMLEALRAVRALDPG  268 (479)
T ss_pred             H-HHhhCC--chhhhhhccchHh--hhccChhHHHHHHHHHHhCCCEE-EEeccCCc---cHHHHHHHHHHHHHCCC
Confidence            7 433221  1000000111001  12223346788888888898875 5564 444   33444555555555543

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.40  E-value=2.1e-11  Score=112.72  Aligned_cols=178  Identities=13%  Similarity=0.078  Sum_probs=126.6

Q ss_pred             CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (308)
Q Consensus        38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (308)
                      ....++.++|.++++++.+++++.+++++|.++++..+||+|+++++|+++..|+...                      
T Consensus        85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~----------------------  142 (475)
T TIGR01303        85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV----------------------  142 (475)
T ss_pred             HhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC----------------------
Confidence            3455777889999999999999999999999999999999998899999999997311                      


Q ss_pred             hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                           -...++.++|.  .+++++++++++.+++++|.+++.+.+||++ +++++|+||.+|++
T Consensus       143 ---------------------~~~~~V~dIMt--~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl  199 (475)
T TIGR01303       143 ---------------------DRFTQVRDIMS--TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGAL  199 (475)
T ss_pred             ---------------------CCCCCHHHHcc--CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence                                 01134777887  7899999999999999999999999999999 89999999999997


Q ss_pred             HHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          197 MRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       197 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                       +.....  +... .+. -..--..+.......+.++.|.+.+.+.+.+=-.+|+.   ....|.++.+...
T Consensus       200 -~~~~~~--~~~d-~~g-rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~---~~~~~~i~~i~~~  263 (475)
T TIGR01303       200 -RATIYT--PATD-AAG-RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQ---VKMISAIKAVRAL  263 (475)
T ss_pred             -HHHhCC--chhh-hcc-CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCc---HHHHHHHHHHHHH
Confidence             433221  1000 000 00011112234456677777888888776442234544   3333444444433

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=2e-12  Score=97.15  Aligned_cols=93  Identities=25%  Similarity=0.361  Sum_probs=79.8

Q ss_pred             CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-
Q 021709            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-   79 (308)
Q Consensus         1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-   79 (308)
                      |.+++.+.+||+|++++++|++|..|+.+............+++++|.+++.++.+++++.+|++.|.+++...+||++ 
T Consensus        19 ~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~   98 (114)
T cd04619          19 LGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE   98 (114)
T ss_pred             HHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC
Confidence            4567889999999889999999999998544331223345679999999999999999999999999999999999998 


Q ss_pred             CCeEEEEEeHHHHH
Q 021709           80 NGEVIALLDIAKCL   93 (308)
Q Consensus        80 ~~~~vGivs~~dll   93 (308)
                      +|+++|+++..+++
T Consensus        99 ~~~~~Gvi~~~dl~  112 (114)
T cd04619          99 NARPLGVLNARDAL  112 (114)
T ss_pred             CCcEEEEEEhHhhc
Confidence            58999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.40  E-value=4.9e-12  Score=118.08  Aligned_cols=124  Identities=19%  Similarity=0.203  Sum_probs=101.8

Q ss_pred             HHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccc
Q 021709          136 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV  214 (308)
Q Consensus       136 ~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~  214 (308)
                      ...+...++.++|.  +++.++.+++++.++++.|.+++++.+||++ +++++|+||..|++ +.+.........++.++
T Consensus       329 ~~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~i  405 (454)
T TIGR01137       329 FDVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELL-SALFAGKANPDDAVSKV  405 (454)
T ss_pred             HHHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH-HHHhccCCCcCCCHHHh
Confidence            34456667889997  7899999999999999999988999999998 78999999999996 44333322224578899


Q ss_pred             cccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       215 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      |.+++.+++.++++.+++++|..++   .|||+++|+++|+||+.||++++
T Consensus       406 m~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       406 MSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             cCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence            9989999999999999999998864   34455579999999999999863

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.39  E-value=1e-11  Score=91.56  Aligned_cols=102  Identities=25%  Similarity=0.310  Sum_probs=87.8

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (308)
                      ++.++++++++.++++.|.+++...+||+++++++|+++..++....                                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~---------------------------------   48 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH---------------------------------   48 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence            56789999999999999999999999999999999999999986420                                 


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                                ...++.++|.  .++.++++++++.++++.|.+++.+.+||+++++++|++|..|++
T Consensus        49 ----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~  103 (105)
T cd04599          49 ----------PNRLVADAMT--REVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA  103 (105)
T ss_pred             ----------ccCCHHHHcc--CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence                      0112445564  678999999999999999999999999999989999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.39  E-value=5.6e-12  Score=94.61  Aligned_cols=109  Identities=19%  Similarity=0.276  Sum_probs=87.4

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCC-CcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGK-FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~-~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (308)
                      +++.++++++++.+|++.|.+++ ...+||++ +|+++|+++..+++......                           
T Consensus         1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~---------------------------   53 (114)
T cd04801           1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ---------------------------   53 (114)
T ss_pred             CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh---------------------------
Confidence            35778999999999999997765 88999998 58999999999987542100                           


Q ss_pred             ChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                  ....++.++|.+...+.++.+++++.++++.|.+++.+++||++ +++++|++|.+|++
T Consensus        54 ------------~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~  112 (114)
T cd04801          54 ------------WAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL  112 (114)
T ss_pred             ------------ccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence                        01223555664223466899999999999999999999999998 68999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.38  E-value=1.4e-12  Score=118.33  Aligned_cols=94  Identities=33%  Similarity=0.469  Sum_probs=87.6

Q ss_pred             CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC
Q 021709            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN   80 (308)
Q Consensus         1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~   80 (308)
                      |.+.|++++.++++++...||+|.+|++++++.+..+. ..+|+.+|..++++++.++.+.+|+.+|.+++++++||.++
T Consensus       175 m~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~  253 (610)
T COG2905         175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED  253 (610)
T ss_pred             HHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence            67889999999999999999999999998887776554 78999999999999999999999999999999999999999


Q ss_pred             CeEEEEEeHHHHHHH
Q 021709           81 GEVIALLDIAKCLYD   95 (308)
Q Consensus        81 ~~~vGivs~~dll~~   95 (308)
                      |+++|+++..|+++.
T Consensus       254 gq~~Gilt~~dIl~l  268 (610)
T COG2905         254 GQPLGILTLTDILRL  268 (610)
T ss_pred             CeeeEEeeHHHHHHh
Confidence            999999999999864

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.1e-11  Score=91.64  Aligned_cols=103  Identities=28%  Similarity=0.417  Sum_probs=89.4

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA  231 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  231 (308)
                      ++.++.++.++.+++..|.+.+.+.+||++ +++++|+++..+++ ..      ....++.++|...+.++..++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~-~~------~~~~~~~~~~~~~~~~v~~~~~l~~~   74 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-RN------PEEEQLALLMTRDPPTVSPDDDVKEA   74 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHH-hc------cccchHHHHhcCCCceECCCCCHHHH
Confidence            467788999999999999988889999998 68999999999995 31      11235677788889999999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       232 ~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      +..|..++.+.+||+| +|+++|+||..|+++
T Consensus        75 ~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          75 AKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence            9999999999999998 489999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.38  E-value=4.3e-12  Score=113.13  Aligned_cols=117  Identities=12%  Similarity=0.167  Sum_probs=99.7

Q ss_pred             ccccccccccC--ceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        40 ~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      ..+|+++|.++  +.++++++++.+|.+.|.+.+...+||++ +|+++|+++..|+.+.....                 
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~-----------------  258 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG-----------------  258 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC-----------------
Confidence            46799999988  99999999999999999999999999998 68999999999986431100                 


Q ss_pred             hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl  195 (308)
                                           .....++.++|.  +++.++.+++++.++++.|.+++...+||++ +++++|++|..|+
T Consensus       259 ---------------------~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di  315 (321)
T PRK11543        259 ---------------------GALTTPVNEAMT--RGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF  315 (321)
T ss_pred             ---------------------CCcCCcHHHhcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence                                 011234667786  6788999999999999999999999999999 7899999999999


Q ss_pred             H
Q 021709          196 L  196 (308)
Q Consensus       196 ~  196 (308)
                      +
T Consensus       316 ~  316 (321)
T PRK11543        316 Y  316 (321)
T ss_pred             H
Confidence            6

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.5e-11  Score=92.91  Aligned_cols=110  Identities=22%  Similarity=0.336  Sum_probs=88.9

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++++++++.+|++.|.++++..+||++ +++++|+++..++.+......                            
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----------------------------   53 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----------------------------   53 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----------------------------
Confidence            568999999999999999999999999998 589999999999876422100                            


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C---CEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~dl~  196 (308)
                               .....++.++|.....+.++.+++++.+++++|.+++.+.+||++ +   ++++|++|.+|++
T Consensus        54 ---------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          54 ---------DLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             ---------CccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence                     011223455664113688999999999999999999999999998 5   6999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.37  E-value=2.4e-11  Score=90.52  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=90.1

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      +++.+++++.++.++.+.|.+++...+||+++++++|+++..++.+.....                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRHG-----------------------------   52 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence            467889999999999999999999999999889999999999986531100                             


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                                ....++.++|.  ..+.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        53 ----------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~  108 (110)
T cd04595          53 ----------LGHAPVKDYMS--TDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL  108 (110)
T ss_pred             ----------cccCcHHHHhc--CCCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence                      01233556665  678899999999999999999999999999988999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.36  E-value=1.2e-11  Score=93.47  Aligned_cols=110  Identities=20%  Similarity=0.299  Sum_probs=90.2

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcC-CcEEEEeeCCEEEEEeeHHHHHHHHHhcCCC---ccccccccccccCceeecCCCCH
Q 021709          153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLP---ADSTLVEKVMTPNPECATIDTPI  228 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~~~~~~~~~v~~~~~l  228 (308)
                      ++.++++++++.++++.|...+ .+.+||+++|+++|+++..|++ +.......   ....++.++|...+.++.+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~   80 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALM-ELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL   80 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHH-HHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence            4567899999999999998876 8899999889999999999995 44332110   11346888999899999999999


Q ss_pred             HHHHHHHHhCCCC---EEEEECCCCcEEEEEEhhHHHH
Q 021709          229 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       229 ~~~~~~~~~~~~~---~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      .++++.|...+..   ..||++++|+++|+||..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            9999999988754   3468888899999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.35  E-value=1.9e-11  Score=93.05  Aligned_cols=119  Identities=22%  Similarity=0.289  Sum_probs=92.8

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      +++.+++++.++.++.+.|.+++++.+||++ +|+++|+++..+++.........                         
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-------------------------   56 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR-------------------------   56 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-------------------------
Confidence            5788999999999999999999999999998 59999999999987542211000                         


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                        .............++.++|.  .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        57 --~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~  122 (124)
T cd04600          57 --PLRGRLRGRDKPETVGDIMS--PPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI  122 (124)
T ss_pred             --hhhhhhhcccccccHHHhcc--CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence              00000000112334667776  6899999999999999999999999999999 89999999999995

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.34  E-value=2.9e-11  Score=90.10  Aligned_cols=109  Identities=24%  Similarity=0.321  Sum_probs=90.2

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      +++.+++++.++.++.+.|.+++.+.+||+++++++|+++..++++.....                             
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~-----------------------------   51 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE-----------------------------   51 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc-----------------------------
Confidence            367789999999999999999999999999889999999999987532110                             


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                              ......++.++|.  .++.++.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus        52 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~  109 (111)
T cd04800          52 --------GLDPDTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL  109 (111)
T ss_pred             --------CCCccCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence                    0001223556665  678899999999999999999999999999888999999999995

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=4.3e-11  Score=91.12  Aligned_cols=116  Identities=22%  Similarity=0.207  Sum_probs=87.9

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      ++.++.+++++.+|++.|.++++.++||++ + ++++|+++..|+++..........  .                    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~--~--------------------   59 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP--G--------------------   59 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc--c--------------------
Confidence            567899999999999999999999999998 4 799999999999865332111000  0                    


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl  195 (308)
                          .....  .......+++.  .++.++.+++++.++++.|.+++.+++||++ +++++|+||.+|+
T Consensus        60 ----~~~~~--~~~~~~~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di  120 (123)
T cd04627          60 ----LDPLY--PIPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             ----hhhhh--hhhhhhcccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence                00000  00001223444  6789999999999999999999999999998 7899999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=3.7e-11  Score=89.71  Aligned_cols=109  Identities=22%  Similarity=0.302  Sum_probs=88.6

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (308)
                      .+.++++++++.++++.|.+++...++|.++|+++|+++..++++......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~-----------------------------   52 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHG-----------------------------   52 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcC-----------------------------
Confidence            467899999999999999888888888888899999999999976522100                             


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                             ......++.++|.  ..+.++.+++++.++++.|.+++...+||+++++++|++|.+|++
T Consensus        53 -------~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~  110 (112)
T cd04625          53 -------AGVLDTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVA  110 (112)
T ss_pred             -------CchhcCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence                   0001123566665  568899999999999999999999999999989999999999995

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.34  E-value=4.1e-11  Score=89.16  Aligned_cols=105  Identities=28%  Similarity=0.412  Sum_probs=88.2

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      +++.++.++.++.++++.|.+++...+||++ +|+++|+++..++++.....                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~----------------------------   53 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD----------------------------   53 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence            5778999999999999999999999999998 58999999999987542110                            


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                   ..++.++|.  .++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|+.
T Consensus        54 -------------~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~  108 (110)
T cd04605          54 -------------KKSVEDIMT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS  108 (110)
T ss_pred             -------------ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence                         012444554  5788999999999999999999999999998 78999999999984

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2.4e-11  Score=90.96  Aligned_cols=111  Identities=26%  Similarity=0.424  Sum_probs=90.6

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      +++.+++++.++.++++.|.+++.+.+||++ +++++|+++..++++........                         
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~-------------------------   55 (114)
T cd04629           1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYH-------------------------   55 (114)
T ss_pred             CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhc-------------------------
Confidence            3577899999999999999999999999998 68999999999987653321000                         


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                                .....++.++|.  .++..+.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus        56 ----------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~  112 (114)
T cd04629          56 ----------CDGVATVRDIMT--TEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVL  112 (114)
T ss_pred             ----------cCCCccHHHHhc--cCceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence                      011234566665  578899999999999999999999999999888999999999995

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.33  E-value=3.9e-11  Score=88.64  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=86.1

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.+++++.++.+|++.|.+++...+||++ +|+++|+++..++++..                                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------------------------------   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------------------------------   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence            567899999999999999999999999998 68999999999987430                                


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                  ..++.++|.  +.+..+.+++++.++++.|.+++...+||++ +++++|++|.++++
T Consensus        50 ------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~  104 (106)
T cd04582          50 ------------GGCCGDHAE--PFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA  104 (106)
T ss_pred             ------------ccchhhhcc--cCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence                        011445554  5677899999999999999999999999998 78999999999985

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.1e-11  Score=90.94  Aligned_cols=106  Identities=14%  Similarity=0.174  Sum_probs=88.4

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++.+++++.++++.|.+.+...+||++ +|+++|+++..++.+.....                             
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~-----------------------------   52 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEG-----------------------------   52 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhc-----------------------------
Confidence            567899999999999999988999999998 48999999999987542210                             


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                ....++.++|.  .++.+++++.++.++++.|.+++.+.+||++ +++++|++|.+|+.
T Consensus        53 ----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~  109 (111)
T cd04639          53 ----------GPDAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG  109 (111)
T ss_pred             ----------CCCCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence                      01123556665  6788999999999999999999999999998 59999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=3e-11  Score=93.77  Aligned_cols=131  Identities=21%  Similarity=0.271  Sum_probs=92.8

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.+++++.++.+|++.|.+++...+||++ +++++|+++..++++.............   +.-.  ..+         
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~---~~~~--~~~---------   67 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKK---SIKM--KRK---------   67 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchh---hhhh--hhh---------
Confidence            467899999999999999999999999998 5999999999999865321100000000   0000  000         


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                      ..............++.++|.  +++..+.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus        68 ~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~  133 (135)
T cd04621          68 AGQKRYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC  133 (135)
T ss_pred             cccccccccccccccHHHhcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence            000000000112345778886  678899999999999999999999999999989999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.33  E-value=4.4e-11  Score=88.99  Aligned_cols=107  Identities=20%  Similarity=0.314  Sum_probs=89.2

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      +++++++++.++.++++.|.+++++.+||+++++++|+++..++++.....                             
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~-----------------------------   51 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG-----------------------------   51 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence            467889999999999999999999999999889999999999987541100                             


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                ....++.+++.  .++.+++++.++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        52 ----------~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~  108 (110)
T cd04588          52 ----------LELAKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL  108 (110)
T ss_pred             ----------ccccCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence                      00123455554  6789999999999999999999999999998 69999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=3.7e-11  Score=89.86  Aligned_cols=108  Identities=27%  Similarity=0.355  Sum_probs=89.7

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++.+++++.++++.|.+.+.+.+||++ +++++|+++..++.+.....                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES-----------------------------   52 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence            467889999999999999999999999998 58999999999997542210                             


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                              ..+...++.++|.  .++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        53 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~  111 (113)
T cd04615          53 --------EELKDAKVREVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDIL  111 (113)
T ss_pred             --------hhhcCCcHHHhcc--CCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence                    0122234566665  6789999999999999999999999999998 78999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.33  E-value=3.9e-11  Score=89.30  Aligned_cols=108  Identities=23%  Similarity=0.286  Sum_probs=89.0

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      +++.+++++.++.++++.|.+.+..++||+++++++|+++..++.+......                            
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------   52 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEGR----------------------------   52 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcCc----------------------------
Confidence            4678899999999999999999999999998899999999999875321000                            


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                ....++.++|.  .++.++.+++++.++++.|.+++.+.+||++ +++++|++|..|++
T Consensus        53 ----------~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  109 (111)
T cd04612          53 ----------EATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL  109 (111)
T ss_pred             ----------ccccCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                      00012444554  6789999999999999999999999999998 69999999999985

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.33  E-value=2.3e-11  Score=90.31  Aligned_cols=103  Identities=14%  Similarity=0.249  Sum_probs=87.8

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      .++.++++++++.++++.|.+++...+||++ +|+++|+++..++....                               
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------   50 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------------------------------   50 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------------------------------
Confidence            3678999999999999999999999999998 68999999999985310                               


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                  ...++.++|.  ..+.+++++.++.++++.|.+++.+.+||++ +|+++|++|..|++
T Consensus        51 ------------~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~  106 (108)
T cd04596          51 ------------PDTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL  106 (108)
T ss_pred             ------------ccccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                        0123455564  5788999999999999999999999999998 88999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=3.1e-11  Score=91.96  Aligned_cols=120  Identities=28%  Similarity=0.378  Sum_probs=91.1

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (308)
                      +++.++.++.++.+++++|.+.+...+||++ + |+++|+++..+++...........  .              ..   
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~--~--------------~~---   61 (125)
T cd04631           1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNK--I--------------KT---   61 (125)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcc--c--------------cc---
Confidence            4677899999999999999999999999998 4 899999999999764321100000  0              00   


Q ss_pred             ChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                        ..     .......++.+++.  .++.++++++++.++++.|.+.+.+.+||++ +|+++|+||..|++
T Consensus        62 --~~-----~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~  123 (125)
T cd04631          62 --GN-----GLEAINEPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL  123 (125)
T ss_pred             --cc-----cchhhhcCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence              00     00011234556665  6799999999999999999999999999998 69999999999995

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.33  E-value=5.4e-11  Score=88.54  Aligned_cols=107  Identities=19%  Similarity=0.261  Sum_probs=89.1

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (308)
                      ++.++++++++.++++.|.+++.+.+||+++++++|+++..++.+......                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~~-----------------------------   52 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASGP-----------------------------   52 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcCC-----------------------------
Confidence            467899999999999999999999999999899999999999875422100                             


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                               ....++.++|.  .++.++++++++.++++.|.+.+.+.+||++ +|+++|+++.+|++
T Consensus        53 ---------~~~~~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~  109 (111)
T cd04611          53 ---------DLQTPVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL  109 (111)
T ss_pred             ---------CCCcCHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence                     01233556665  6788999999999999999999999999998 69999999999985

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.5e-11  Score=91.87  Aligned_cols=94  Identities=35%  Similarity=0.615  Sum_probs=79.6

Q ss_pred             CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC
Q 021709            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN   80 (308)
Q Consensus         1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~   80 (308)
                      |.++++..+||++++++++|+++..|+++.+..........++.++|.+++.++.+++++.++++.|.+.+.+.+||+++
T Consensus        19 ~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~   98 (113)
T cd04623          19 MAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG   98 (113)
T ss_pred             HHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence            34567889999998889999999999985554332223345789999889999999999999999999999999999988


Q ss_pred             CeEEEEEeHHHHHH
Q 021709           81 GEVIALLDIAKCLY   94 (308)
Q Consensus        81 ~~~vGivs~~dll~   94 (308)
                      |+++|+++..++++
T Consensus        99 ~~~~Gvit~~di~~  112 (113)
T cd04623          99 GKLVGIVSIGDVVK  112 (113)
T ss_pred             CEEEEEEEHHHhhc
Confidence            99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=5.1e-11  Score=88.94  Aligned_cols=110  Identities=22%  Similarity=0.298  Sum_probs=89.8

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      +++.+++++.++.++++.|.+.+.+.+||+++++++|+++..++++......                            
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------   52 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN----------------------------   52 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc----------------------------
Confidence            3567899999999999999999999999999789999999999986432100                            


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                              ......++.++|.  .++.++.+++++.++++.|.+.+.+.+||+++++++|+++..|++
T Consensus        53 --------~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~  110 (112)
T cd04802          53 --------LKPREVPVGEVMS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIV  110 (112)
T ss_pred             --------CCcccCCHHHhcC--CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence                    0001223556665  678899999999999999999999999999955999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.32  E-value=5.6e-11  Score=87.70  Aligned_cols=99  Identities=20%  Similarity=0.177  Sum_probs=84.9

Q ss_pred             eEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHH
Q 021709           52 TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF  131 (308)
Q Consensus        52 ~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (308)
                      +++++++++.++++.|.+.+...+||+++++++|+++..++.+..                                   
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~-----------------------------------   48 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT-----------------------------------   48 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence            478999999999999999999999999889999999999986420                                   


Q ss_pred             HHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       132 ~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                               ..++.++|.  ..+.++.++.++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus        49 ---------~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~  102 (104)
T cd04594          49 ---------YGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL  102 (104)
T ss_pred             ---------ccchhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence                     011344454  568899999999999999999999999999989999999999985

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=3.9e-11  Score=89.49  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=88.8

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.+++++.++.++++.|.+++++.+||++ +|+++|+++..+++......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE-----------------------------   52 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence            567899999999999999999999999998 59999999999987531100                             


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                               .....++.++|.  +++.++.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus        53 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~  109 (111)
T cd04626          53 ---------SFLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL  109 (111)
T ss_pred             ---------ccccCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence                     001123555665  678899999999999999999999999999888999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.32  E-value=7e-11  Score=88.10  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=89.2

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (308)
                      ++++++++.++.++++.|.+++...+||+++++++|+++..++++.....                              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------   51 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------   51 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence            56789999999999999999999999999888999999999987532100                              


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                             ......++.++|.  .++..+++++++.++++.|.+++.+.+||+++++++|++|..|++
T Consensus        52 -------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~  109 (111)
T cd04589          52 -------GLPSSTPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL  109 (111)
T ss_pred             -------CCCCCCCHHHHhC--CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence                   0011233556665  678899999999999999999999999999988999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.32  E-value=3.8e-11  Score=90.87  Aligned_cols=119  Identities=27%  Similarity=0.376  Sum_probs=92.1

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      +++.+++++.++.++++.|.+.++..+||+++|+++|+++..++.+.........                       ..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~-----------------------~~   57 (122)
T cd04585           1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTL-----------------------DI   57 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccc-----------------------cc
Confidence            3577899999999999999999999999998899999999999976422110000                       00


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                      ..    ........++.++|.  +++.++++++++.+++..|.+.+.+.+||++ +|+++|++|..|++
T Consensus        58 ~~----~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~  120 (122)
T cd04585          58 WE----LYYLLSKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF  120 (122)
T ss_pred             hh----hhhhhcccCHHHhcc--CCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence            00    000012334666776  6789999999999999999999999999998 69999999999996

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=4.8e-11  Score=90.39  Aligned_cols=119  Identities=24%  Similarity=0.271  Sum_probs=92.4

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++++++.+++++.++++.|.+++++.+||+++|+++|+++..++.+..........                        
T Consensus         1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~------------------------   56 (121)
T cd04633           1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVR------------------------   56 (121)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhccc------------------------
Confidence            36778999999999999999999999999999999999999998754321110000                        


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                         ...........++.++|.  .++.++.+++++.++++.|.+.+.+.+||+++++++|++|..|++
T Consensus        57 ---~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~  119 (121)
T cd04633          57 ---DRHQERRIRNLPVSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL  119 (121)
T ss_pred             ---chhhhhhhhccCHHHHcc--CCceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence               000011122334566665  678899999999999999999999999999889999999999995

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.32  E-value=4.4e-11  Score=89.85  Aligned_cols=108  Identities=19%  Similarity=0.293  Sum_probs=88.7

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++++++++.++++.|.+.+...+||++ +|+++|+++..++.+......                            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~----------------------------   53 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE----------------------------   53 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc----------------------------
Confidence            567889999999999999999999999998 589999999999975422100                            


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C--CEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~--~~~~Givt~~dl~  196 (308)
                               .....++.++|.  .++.++.+++++.+++++|.+++.+.+||++ +  |+++|++|.+|++
T Consensus        54 ---------~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~  113 (115)
T cd04593          54 ---------AGEPSAVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL  113 (115)
T ss_pred             ---------ccccccHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence                     001122455565  6789999999999999999999999999998 5  7999999999996

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.31  E-value=7.2e-11  Score=87.56  Aligned_cols=104  Identities=20%  Similarity=0.269  Sum_probs=88.2

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      +++.+++++.++.++++.|.++++..+||++ +++++|+++..+++....                              
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------   51 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------   51 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence            4577899999999999999999999999998 589999999999865310                              


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                  ...++.++|.  ..+..+++++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus        52 ------------~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~  107 (109)
T cd04583          52 ------------EAKSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV  107 (109)
T ss_pred             ------------cCCcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence                        0123455565  5788999999999999999999999999998 78999999999985

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.31  E-value=3.2e-11  Score=90.29  Aligned_cols=107  Identities=18%  Similarity=0.210  Sum_probs=88.5

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++++++++.++.++++.|.+.+.+.+||++ +|+++|+++..++++.....                             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-----------------------------   53 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG-----------------------------   53 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-----------------------------
Confidence            456889999999999999999999999997 68999999999987532210                             


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                               .....++.++|.  ..+.++.+++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus        54 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          54 ---------LSLDDPVSEVMN--RNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             ---------CCcCCCHHHhhc--CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence                     001223556665  6788999999999999999999999999998 88999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=5.6e-11  Score=88.83  Aligned_cols=110  Identities=23%  Similarity=0.265  Sum_probs=89.6

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      +++.++++++++.+|.+.|.+++.+.+||+++|+++|+++..+++.......                            
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~----------------------------   52 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEG----------------------------   52 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhcc----------------------------
Confidence            3577899999999999999999999999998899999999999863311100                            


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                              ......++.++|.  ..+.++.+++++.++++.|.+.+.+++||++ +++++|++|..|++
T Consensus        53 --------~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  111 (113)
T cd04622          53 --------RDPDTTTVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA  111 (113)
T ss_pred             --------CCcccCCHHHhcc--CCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence                    0001123566665  6788999999999999999999999999998 68999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=5.7e-11  Score=88.67  Aligned_cols=108  Identities=21%  Similarity=0.264  Sum_probs=89.2

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      +++.+++++.++.++++.|.+.++..+||++ +++++|+++..++++.....                            
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------   52 (112)
T cd04624           1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------   52 (112)
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc----------------------------
Confidence            3567899999999999999999999999998 58999999999987542210                            


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                .....++.++|.  .++.++.+++++.++++.|.+++...+||++ +|++.|++|..|++
T Consensus        53 ----------~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~  110 (112)
T cd04624          53 ----------IDLDTPVSEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV  110 (112)
T ss_pred             ----------CCCccCHHHhcc--CCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence                      001223556665  6788999999999999999998899999998 69999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.30  E-value=3.9e-11  Score=92.93  Aligned_cols=130  Identities=22%  Similarity=0.293  Sum_probs=93.8

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHH-HHHhHHHHHHHhhhhhhccCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMER-AAEKGKAIAAAVEGVEKHWGTSIS  126 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  126 (308)
                      +++.++.++.++.++++.|.+++.+++||++ +++++|+++..++.+........ .......    .           .
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~----~-----------~   66 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDL----L-----------A   66 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHH----h-----------c
Confidence            5678999999999999999999999999998 58999999999997643221100 0000000    0           0


Q ss_pred             ChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                      .... ...........++.++|.  +++.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        67 ~~~~-~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~  133 (135)
T cd04586          67 GAEE-LAAAFVRSHGRKVADVMT--RPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL  133 (135)
T ss_pred             chHH-HHHHHHHhcCCCHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence            0000 000000112345777776  679999999999999999999999999999988999999999985

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.29  E-value=7.6e-11  Score=87.18  Aligned_cols=103  Identities=21%  Similarity=0.340  Sum_probs=87.6

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      +++.+++.+.++.++++.|.+.+...+||+++++++|+++..+++..                                 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~---------------------------------   48 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK---------------------------------   48 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------------
Confidence            46788999999999999999888889999988999999999998631                                 


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                ....++.++|.  ..+.++.+++++.++++.|.+++...+||++ +|+++|+++..|++
T Consensus        49 ----------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~  105 (107)
T cd04610          49 ----------DPDETVEEIMS--KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI  105 (107)
T ss_pred             ----------CccccHHHhCC--CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence                      00123556665  6688899999999999999999999999998 78999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=1.3e-10  Score=88.09  Aligned_cols=118  Identities=27%  Similarity=0.299  Sum_probs=90.2

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (308)
                      ++++++++.++.++++.|.++++..+||+++|+++|+++..++.+..........+..                     .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~---------------------~   60 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETE---------------------K   60 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchH---------------------H
Confidence            5678999999999999999999999999998999999999999765332111000000                     0


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                      .    ..  ....++.++|.  .++..+.+++++.++++.|.+++...+||++ +++++|++|..|++
T Consensus        61 ~----~~--~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll  120 (122)
T cd04637          61 D----LA--TLNRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL  120 (122)
T ss_pred             H----HH--HHHhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence            0    00  00112455554  6789999999999999999999999999998 68999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=7.6e-11  Score=89.43  Aligned_cols=117  Identities=22%  Similarity=0.353  Sum_probs=90.8

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++.+++++.++.+.|.+.+++.+||+++ |+++|+++..++++..........                        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~------------------------   57 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNG------------------------   57 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcccccccc------------------------
Confidence            5778999999999999999999999999984 899999999998764321100000                        


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                      ....    ......++.+++.  .++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        58 ~~~~----~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~  120 (122)
T cd04803          58 EESL----TKERDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL  120 (122)
T ss_pred             cccc----ccccCcCHHHhhC--CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence            0000    0112334566665  6788999999999999999999999999998 58999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.28  E-value=1.1e-10  Score=108.80  Aligned_cols=114  Identities=12%  Similarity=0.138  Sum_probs=95.2

Q ss_pred             cccccc---cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           43 VSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        43 v~~im~---~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      ++++|.   ..+.++++++++.+|+++|.++++..+||+++    ++++|+++..|+...                    
T Consensus        96 Vk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~--------------------  155 (502)
T PRK07107         96 VKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS--------------------  155 (502)
T ss_pred             HHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc--------------------
Confidence            445553   34569999999999999999999999999984    799999999998421                    


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHH
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (308)
                                           ......++.++|++.++++++.+++++.+++++|.+++++.+||+| +++++|+||.+|
T Consensus       156 ---------------------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~D  214 (502)
T PRK07107        156 ---------------------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKD  214 (502)
T ss_pred             ---------------------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHH
Confidence                                 0012345788887445889999999999999999999999999999 789999999999


Q ss_pred             HHH
Q 021709          195 ILM  197 (308)
Q Consensus       195 l~~  197 (308)
                      +++
T Consensus       215 ilk  217 (502)
T PRK07107        215 YDS  217 (502)
T ss_pred             HHh
Confidence            973

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=6e-11  Score=90.76  Aligned_cols=121  Identities=20%  Similarity=0.251  Sum_probs=88.1

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      .+.++++++++.+|++.|.++++..+||++ +|+++|+++..|+.+..........                      .+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----------------------~~   59 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----------------------YR   59 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----------------------cc
Confidence            567899999999999999999999999998 5899999999998764321100000                      00


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                      ......+..  ......+.+.  .++.++++++++.++++.|.+++.+++||++ +++++|++|.+|++
T Consensus        60 ~~~~~~~~~--~~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil  124 (126)
T cd04642          60 TITFKELSE--KFTDSDGVKS--RPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII  124 (126)
T ss_pred             chhhhhhhh--hccccccccc--CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence            000000000  0011123343  6789999999999999999999999999998 68999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.28  E-value=1.1e-10  Score=87.24  Aligned_cols=109  Identities=15%  Similarity=0.179  Sum_probs=89.0

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (308)
                      ++.++.++.++.++++.|.+++.+.+||+++++++|+++..+++.......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~-----------------------------   52 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQG-----------------------------   52 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcC-----------------------------
Confidence            567899999999999999999999999998899999999999874322100                             


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                             ......++.++|.  ..+.++.+++++.++++.|.+++..++||++ +++++|++|..|++
T Consensus        53 -------~~~~~~~v~~i~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~  111 (113)
T cd04587          53 -------LDPESTLVERVMT--PNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT  111 (113)
T ss_pred             -------CCcCcCCHHHhcC--CCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence                   0000134566665  6788999999999999999999999999998 68999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.27  E-value=1.9e-11  Score=93.40  Aligned_cols=109  Identities=22%  Similarity=0.337  Sum_probs=88.8

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      +++.+++++.++.++++.|.+++++.+||++ +++++|+++..++++......                           
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~---------------------------   54 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK---------------------------   54 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---------------------------
Confidence            5688999999999999999999999999998 589999999999876432110                           


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHH---------cCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE---------LRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                .....++.++|.  .++.++.+++++.++.+++..         .+.+++||++ +|+++|+||.+|++
T Consensus        55 ----------~~~~~~v~~im~--~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~  121 (124)
T cd04608          55 ----------VQPSDPVSKALY--KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLL  121 (124)
T ss_pred             ----------cCCCCcHHHHhh--ccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhh
Confidence                      012346888887  789999999999999996543         2566777887 68999999999996

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=8.6e-11  Score=88.20  Aligned_cols=108  Identities=18%  Similarity=0.232  Sum_probs=85.8

Q ss_pred             CceEEeCCCcHHHHHHHhHhCC-CcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~-~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.+++++.++.++++.|.+++ ...+||.++|+++|+++..++++......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------   53 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGK----------------------------   53 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCC----------------------------
Confidence            5678899999999999998888 66778878899999999999975421100                            


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCC--CcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPT--DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                               .....++.++|.  .++.++.++  +++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        54 ---------~~~~~~i~~~~~--~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~  113 (115)
T cd04620          54 ---------DLSDLPIGEVMT--QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR  113 (115)
T ss_pred             ---------CccccCHHHhcC--CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence                     001133556665  567778776  7899999999999999999998 79999999999995

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1e-10  Score=90.22  Aligned_cols=128  Identities=17%  Similarity=0.203  Sum_probs=93.8

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++++++++.++++.|.+.+.+++||++ +++++|+++..++++..........               .........
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~---------------~~~~~~~~~   66 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFY---------------VTLLYSVIF   66 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccc---------------ccccccccc
Confidence            567899999999999999999999999998 5899999999998764321100000               000000000


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                      ..  ..........++.++|.  +++..+.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus        67 ~~--~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~  130 (132)
T cd04636          67 LD--ESKIKKLLGKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII  130 (132)
T ss_pred             cc--hHHHHHHcCCCHHHhcc--CCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence            00  11222233346777876  678999999999999999999999999999989999999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=9.7e-11  Score=87.95  Aligned_cols=111  Identities=15%  Similarity=0.263  Sum_probs=86.9

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      +++++++++++.++++.|.++++..+||++ +++++|+++..++++.........                         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~-------------------------   56 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLD-------------------------   56 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchh-------------------------
Confidence            467899999999999999999999999998 589999999999976432100000                         


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                         ..    .+...++.++|.  +.+.++++++++.++++.|.+.+  .+||++ +++++|++|..|++
T Consensus        57 ---~~----~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil  114 (116)
T cd04643          57 ---LE----RLVDLKVIDVMN--TDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREIL  114 (116)
T ss_pred             ---HH----HHhCCcHHHHhc--CCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhh
Confidence               00    012334666675  67999999999999999998754  589998 79999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.26  E-value=5.3e-11  Score=114.09  Aligned_cols=122  Identities=12%  Similarity=0.151  Sum_probs=100.8

Q ss_pred             CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      ....+++|+|.+++.++++++++.++.+.|.+++.+.+||+| +++++|+++..|+.+......                
T Consensus       444 L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~----------------  507 (574)
T PRK01862        444 LRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR----------------  507 (574)
T ss_pred             HhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc----------------
Confidence            445689999999999999999999999999999999999998 589999999999875422100                


Q ss_pred             hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C--CEEEEEeeHH
Q 021709          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSK  193 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~--~~~~Givt~~  193 (308)
                                           .....++.++|.  +++.++++++++.++++.|.+++.+.+||+| +  ++++|++|++
T Consensus       508 ---------------------~~~~~~v~dim~--~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~  564 (574)
T PRK01862        508 ---------------------DTTDKTAADYAH--TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKT  564 (574)
T ss_pred             ---------------------ccccchHHHhcc--CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHH
Confidence                                 001123566776  6788999999999999999999999999998 4  4899999999


Q ss_pred             HHHHH
Q 021709          194 DILMR  198 (308)
Q Consensus       194 dl~~~  198 (308)
                      |+++.
T Consensus       565 DIl~~  569 (574)
T PRK01862        565 SLLDA  569 (574)
T ss_pred             HHHHH
Confidence            99744

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=2e-10  Score=87.97  Aligned_cols=121  Identities=30%  Similarity=0.362  Sum_probs=90.2

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++.++.++.+|++.|.+.+.+.+||++ +++++|+++..++...............                     
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~---------------------   60 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGD---------------------   60 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhh---------------------
Confidence            567899999999999999999999999998 5899999999998754322110000000                     


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~  196 (308)
                        ... ........++.++|.  .++++++++.++.++++.|.+.+...+||++   +++++|+||.+|++
T Consensus        61 --~~~-~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~  126 (128)
T cd04632          61 --RSG-EKERMLDLPVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL  126 (128)
T ss_pred             --hhh-hhhhhccCcHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence              000 000112234667776  6789999999999999999999899999985   48999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.26  E-value=2.6e-11  Score=115.63  Aligned_cols=135  Identities=16%  Similarity=0.162  Sum_probs=97.7

Q ss_pred             CChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhc--
Q 021709          126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ--  202 (308)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~--  202 (308)
                      .++.+.+..........++.++|.+ +++.++++++++.++.+.|.+++.+.+||+| +|+++|++|.+|++. ....  
T Consensus       230 ~t~~dt~~t~~~l~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~-~~~~~~  307 (546)
T PRK14869        230 STPYDTFTTARLINQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS-PVRKKV  307 (546)
T ss_pred             EecccHHHHHHHhhcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhc-cccCce
Confidence            3444555555566667789999962 5799999999999999999999999999999 899999999999973 2221  


Q ss_pred             -------------CCCccc-------cccccccccCceee---cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhh
Q 021709          203 -------------NLPADS-------TLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI  259 (308)
Q Consensus       203 -------------~~~~~~-------~~v~~~~~~~~~~v---~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~  259 (308)
                                   +.....       -++.+++...|..+   +...+..-+.++|.+.++...|++. ...+.||+|-+
T Consensus       308 iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT  386 (546)
T PRK14869        308 ILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDT  386 (546)
T ss_pred             EEEcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHh
Confidence                         000000       02344555555444   3366677888899999988888775 45788888777


Q ss_pred             HHHH
Q 021709          260 HITH  263 (308)
Q Consensus       260 di~~  263 (308)
                      +.++
T Consensus       387 ~~f~  390 (546)
T PRK14869        387 LLFK  390 (546)
T ss_pred             cCcc
Confidence            7665

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.25  E-value=5.9e-11  Score=102.86  Aligned_cols=164  Identities=16%  Similarity=0.186  Sum_probs=134.1

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~  218 (308)
                      +-++.|+|.+++++..+..+.+.+++.+.+....+.++|+-.  -+.++|++..+|++ +++.+........+.... .+
T Consensus       199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~ll-r~l~e~~~~~k~d~~~~a-~e  276 (423)
T COG4536         199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLL-RLLNEKNEFTKEDILRAA-DE  276 (423)
T ss_pred             cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHH-HHhhccCcccHhHHHHHh-cC
Confidence            456899999999999999999999999999999999999986  34599999999997 666554433333333333 58


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCC-----------cchhhhHHHH
Q 021709          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN-----------EAASTMMQKF  287 (308)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  287 (308)
                      |.+|+..+++.+-+..|..++.+...||||.|.+.|+||..||++.+++.....++...           -.+...--+.
T Consensus       277 pyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iRd  356 (423)
T COG4536         277 PYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVRD  356 (423)
T ss_pred             CeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHHH
Confidence            99999999999999999999999999999999999999999999999988875433211           1344444678


Q ss_pred             HHhhccCCCCCchhhhccc
Q 021709          288 WDSAMALSPNDDEEDNRRF  306 (308)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~  306 (308)
                      .|..+.-+++.++.-|..|
T Consensus       357 lNr~l~W~Lp~e~a~TinG  375 (423)
T COG4536         357 LNRALDWNLPDEDARTING  375 (423)
T ss_pred             HHHhcCCCCCCCcchhHHH
Confidence            8888899999888888765

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.3e-10  Score=88.21  Aligned_cols=118  Identities=23%  Similarity=0.389  Sum_probs=90.4

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      +++.++.++.++.++++.|.+.+++.+||++ +|+++|+++..++++........                         
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~-------------------------   55 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSV-------------------------   55 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccc-------------------------
Confidence            3577899999999999999999999999998 59999999999987542110000                         


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                       ...  .........++.+++.  .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus        56 -~~~--~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~  120 (122)
T cd04635          56 -EDQ--QRTQTKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL  120 (122)
T ss_pred             -cch--hhhhhhccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence             000  0000012233556665  6789999999999999999999999999998 78999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=8.8e-11  Score=89.86  Aligned_cols=114  Identities=21%  Similarity=0.249  Sum_probs=84.4

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++.+++++.++++.|.+++.+.+||++ +|+++|+++..|+.+........  +.                      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~--~~----------------------   57 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQ--EG----------------------   57 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHH--Hc----------------------
Confidence            467899999999999999999999999998 58999999999987532110000  00                      


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCcee--Ee----CCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVV--TI----SPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~--~v----~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~  196 (308)
                             .......++.++|.  +++.  .+    .+++++.++++.|.+++.+.+||++ + |.++|+||.+|++
T Consensus        58 -------~~~~~~~~v~~im~--~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~  124 (126)
T cd04640          58 -------GISRSELTVADVMT--PKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA  124 (126)
T ss_pred             -------CCCchheEHHHhcC--chhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence                   00011223556665  3332  23    3688999999999999999999999 5 7999999999995

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=99.24  E-value=4.8e-10  Score=102.62  Aligned_cols=190  Identities=12%  Similarity=0.142  Sum_probs=135.7

Q ss_pred             HHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHh
Q 021709           31 VIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEK  106 (308)
Q Consensus        31 ~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~  106 (308)
                      ++.+..++.+.+++++|.+  .+++++.+.++.++++.+.+++++++||.++  +.++|++..+|++.......      
T Consensus       177 mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~------  250 (413)
T PRK11573        177 MLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK------  250 (413)
T ss_pred             HHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC------
Confidence            3345567888899999985  7899999999999999999999999999974  78999999999985311000      


Q ss_pred             HHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCE
Q 021709          107 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK  185 (308)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~  185 (308)
                                            .         .....+.+++   +++..++++.++.++++.|++++.+.+.|+| .|.
T Consensus       251 ----------------------~---------~~~~~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~  296 (413)
T PRK11573        251 ----------------------E---------FTKENMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGD  296 (413)
T ss_pred             ----------------------c---------CCHHHHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCC
Confidence                                  0         0000122333   4688999999999999999999999999999 799


Q ss_pred             EEEEeeHHHHHHHHHhcCCCcccc----ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHH
Q 021709          186 PRGILTSKDILMRVISQNLPADST----LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI  261 (308)
Q Consensus       186 ~~Givt~~dl~~~~~~~~~~~~~~----~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di  261 (308)
                      ..|+||..|++..+..+-.+..+.    .+... ..+...++...++.++.+.+.- +   +|   ++    ..=|...+
T Consensus       297 ~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~~~l~d~~~~l~~-~---l~---~~----~~~Tl~G~  364 (413)
T PRK11573        297 IQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGTANVREINKAFNW-H---LP---ED----DARTVNGV  364 (413)
T ss_pred             eEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEeeeEHHHHHHHhCC-C---CC---CC----CCeeHHHH
Confidence            999999999997777543222111    11111 2345678888899988888732 2   33   11    23466666


Q ss_pred             HHHHHHHhcCC
Q 021709          262 THAAVATVGNT  272 (308)
Q Consensus       262 ~~~~~~~~~~~  272 (308)
                      +-..++..+..
T Consensus       365 i~~~lg~iP~~  375 (413)
T PRK11573        365 ILEALEEIPVA  375 (413)
T ss_pred             HHHHhCcCCCC
Confidence            66666665553

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.24  E-value=2e-10  Score=85.49  Aligned_cols=105  Identities=16%  Similarity=0.204  Sum_probs=85.8

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      ++++++++.++.+|++.|.+++...+||++ + ++++|+++..++++.....                            
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~----------------------------   53 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG----------------------------   53 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence            467899999999999999999999999997 5 8999999999987542100                            


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                 ....++.+++   .++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus        54 -----------~~~~~~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  109 (111)
T cd04590          54 -----------EEDLDLRDLL---RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL  109 (111)
T ss_pred             -----------CCcCCHHHHh---cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence                       0001233333   3578899999999999999999999999998 69999999999985

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.24  E-value=6.1e-10  Score=104.01  Aligned_cols=112  Identities=10%  Similarity=0.077  Sum_probs=95.6

Q ss_pred             ccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhcc
Q 021709           46 VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (308)
Q Consensus        46 im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (308)
                      .|.++++++++++++.+|+++|.++++..+||+++    ++++|+|+..|+....                         
T Consensus       105 gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-------------------------  159 (505)
T PLN02274        105 GFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-------------------------  159 (505)
T ss_pred             cccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-------------------------
Confidence            36789999999999999999999999999999985    7999999999985210                         


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (308)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~  199 (308)
                                       ....++.++|++..+++++++++++.++++.|.+++.+.+||++ +++++|+||.+|+++..
T Consensus       160 -----------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~  221 (505)
T PLN02274        160 -----------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVK  221 (505)
T ss_pred             -----------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence                             12345778887433488999999999999999999999999998 89999999999997444

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.23  E-value=2.2e-10  Score=84.80  Aligned_cols=97  Identities=18%  Similarity=0.222  Sum_probs=84.3

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCC
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI  125 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (308)
                      ....+.+++++.++...|.+.+...+||+++    |+++|+++..++.+....                           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence            3567899999999999999999999999975    899999999998643110                           


Q ss_pred             CChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                                           +|.  .++.++++++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus        56 ---------------------~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~  103 (105)
T cd04591          56 ---------------------YID--PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL  103 (105)
T ss_pred             ---------------------hcc--CCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence                                 343  578899999999999999999999999999989999999999995

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.23  E-value=7.2e-11  Score=88.24  Aligned_cols=93  Identities=24%  Similarity=0.421  Sum_probs=79.3

Q ss_pred             CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC
Q 021709            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN   80 (308)
Q Consensus         1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~   80 (308)
                      |.+.+++.+||++.+++++|+++..|+.+ +..........++.++|.+++.++++++++.++++.|.+.+...+||+++
T Consensus        19 ~~~~~~~~~~v~~~~~~~~G~v~~~~l~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~   97 (114)
T cd04613          19 IAHSPENNFPVVDDDGRLVGIVSLDDIRE-ILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD   97 (114)
T ss_pred             HHhCCCcceeEECCCCCEEEEEEHHHHHH-HHhcccccccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC
Confidence            45677889999998889999999999974 43433333346899999999999999999999999999999999999986


Q ss_pred             --CeEEEEEeHHHHHH
Q 021709           81 --GEVIALLDIAKCLY   94 (308)
Q Consensus        81 --~~~vGivs~~dll~   94 (308)
                        ++++|+++..+++.
T Consensus        98 ~~~~~~Gvvt~~di~~  113 (114)
T cd04613          98 DPGKLLGILSRSDLLS  113 (114)
T ss_pred             CCCEEEEEEEhHHhhc
Confidence              89999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=3.2e-10  Score=88.84  Aligned_cols=139  Identities=19%  Similarity=0.247  Sum_probs=93.8

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHH-HHHHhHHHHHHHhhhhhhccCCC-CC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME-RAAEKGKAIAAAVEGVEKHWGTS-IS  126 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~  126 (308)
                      ++++++++++++.++++.|.+.+++.+||+++++++|+++..++++....... ......+...    ...  .... ..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~   74 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLE----LIE--LPLREFI   74 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcce----eee--ccchhee
Confidence            36788999999999999999999999999988999999999998764322110 0000000000    000  0000 00


Q ss_pred             ChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                      ........... ....++.++|.  ..+.++++++++.++++.|.+.+.+.+||+++++++|++|..|++
T Consensus        75 ~~~~~~~~~~~-~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~  141 (143)
T cd04634          75 NWEETKRALTD-AGKMKVRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII  141 (143)
T ss_pred             ehHHHHHHHHH-HhcCCHHHHcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence            00011111111 12345667776  679999999999999999999999999999888999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.22  E-value=9.4e-11  Score=100.64  Aligned_cols=147  Identities=15%  Similarity=0.249  Sum_probs=116.2

Q ss_pred             EEEEECCCCcEEEEEehhHHHHHHHHhcc-CCcccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeE
Q 021709            8 ALLLTDSNALLCGILTDKDIATRVIAREL-NLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEV   83 (308)
Q Consensus         8 ~~~V~~~~~~~~Giit~~D~~~~~~~~~~-~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~   83 (308)
                      ++||+..+   .--+|..-.+.+++.+.. .-.=..|.|+|.  .....+.+++++.+...+-.+.+..++||++ ..++
T Consensus       157 ~lPvlsts---YDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kv  233 (432)
T COG4109         157 GLPVLSTS---YDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKV  233 (432)
T ss_pred             CCceEEec---ccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceE
Confidence            45555432   344565555544444321 122246899997  5778999999999999999999999999998 5899


Q ss_pred             EEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcH
Q 021709           84 IALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTV  163 (308)
Q Consensus        84 vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~  163 (308)
                      +|+++.+|+...                                           ....++..+|+  ++++++.+.+++
T Consensus       234 vGvVt~rDv~~~-------------------------------------------~~~t~ieKVMt--knp~tv~~~tsV  268 (432)
T COG4109         234 VGVVTMRDVLDK-------------------------------------------KPSTTIEKVMT--KNPITVRAKTSV  268 (432)
T ss_pred             EEEEEehhhhcC-------------------------------------------CCCccHHHHhc--cCCeeecccchH
Confidence            999999998633                                           23456788887  889999999999


Q ss_pred             HHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhc
Q 021709          164 LMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ  202 (308)
Q Consensus       164 ~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~  202 (308)
                      +.+.+.|...++..+||++ +..++|+||++|++..+...
T Consensus       269 Asvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~  308 (432)
T COG4109         269 ASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI  308 (432)
T ss_pred             HHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence            9999999999999999999 89999999999998665533

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.22  E-value=1e-10  Score=106.77  Aligned_cols=119  Identities=18%  Similarity=0.269  Sum_probs=105.4

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHc-----CCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~  213 (308)
                      ...+++..|+  ..++++.++.|+.+++.++++.     ....++|+| ++++.|+++.++++       ......++++
T Consensus       130 ~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~  200 (451)
T COG2239         130 PEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKD  200 (451)
T ss_pred             Chhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHH
Confidence            3456788888  8999999999999999999954     356789999 88999999999997       2223678999


Q ss_pred             ccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      +|.+.+.++..++..+++.+.+.+++.-.+||||++|+++|+||..|++..+-.
T Consensus       201 im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         201 LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             HhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999986653

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.22  E-value=4.9e-10  Score=104.60  Aligned_cols=113  Identities=10%  Similarity=0.153  Sum_probs=97.0

Q ss_pred             cccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        43 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      .++.|..+++++++++++.+|+++|.+++++.+||+++    ++++|+++..|+...  .                    
T Consensus        98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~--~--------------------  155 (495)
T PTZ00314         98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--K--------------------  155 (495)
T ss_pred             cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--c--------------------
Confidence            45677789999999999999999999999999999985    799999999998521  0                    


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~  197 (308)
                                          ....++.++|.+..++.++++++++.+++++|.+++...+||++ +++++|+||.+|+++
T Consensus       156 --------------------~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~  215 (495)
T PTZ00314        156 --------------------DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKK  215 (495)
T ss_pred             --------------------cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhh
Confidence                                01345778887334899999999999999999999999999999 889999999999973

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.22  E-value=3e-10  Score=85.33  Aligned_cols=110  Identities=25%  Similarity=0.339  Sum_probs=93.3

Q ss_pred             ccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCC
Q 021709           46 VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI  125 (308)
Q Consensus        46 im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (308)
                      .|.++++++.++.++.+|...|.++++..+||++.++++|+++..|+.+.......                        
T Consensus         4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~------------------------   59 (117)
T COG0517           4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGK------------------------   59 (117)
T ss_pred             cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCC------------------------
Confidence            44478999999999999999999999999999998899999999999876432110                        


Q ss_pred             CChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHH-cCCcEEEEee-CC-EEEEEeeHHHH
Q 021709          126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-LRLSSAVVTV-EN-KPRGILTSKDI  195 (308)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~~-~~-~~~Givt~~dl  195 (308)
                                    ...++.++|.  .++.++.++.++.++.+.|.+ .+.+.+||++ ++ +++|++|.+|+
T Consensus        60 --------------~~~~v~~v~~--~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          60 --------------RLLPVKEVMT--KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             --------------ccccHHHhcc--CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence                          0004666776  579999999999999999999 6999999999 54 99999999987

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.22  E-value=1.1e-10  Score=86.83  Aligned_cols=98  Identities=21%  Similarity=0.301  Sum_probs=81.0

Q ss_pred             EeCCCcHHHHHHHhHhCC-----CcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           54 VLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        54 v~~~~~l~~a~~~m~~~~-----~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      +.+++++.++++.|.+++     +..+||++ +++++|+++..++++..                               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------------------------------   50 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------------------------------   50 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence            578899999999998777     47889998 58999999998886310                               


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                  ...++.+++.  .++..+.+++++.++++.|.+.+.+.+||++ +++++|++|..|++
T Consensus        51 ------------~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll  106 (109)
T cd04606          51 ------------PDTPVSDIMD--TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI  106 (109)
T ss_pred             ------------CcchHHHHhC--CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence                        0112445554  5689999999999999999999999999998 89999999999996

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.21  E-value=5e-11  Score=96.86  Aligned_cols=163  Identities=16%  Similarity=0.176  Sum_probs=133.0

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~  218 (308)
                      ...++++|.++....++..+.++.+.+..+.+...+++||+.  .+.+.|++-.+|++ +.+.....++  .++++. ++
T Consensus        66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~~F--~i~~lL-RP  141 (293)
T COG4535          66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAEPF--DIKELL-RP  141 (293)
T ss_pred             HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcccc--cHHHhc-cc
Confidence            445899999989999999999999999999999999999997  67899999999997 5554444332  456665 57


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCCCCCCCcch-----hhh-------HHH
Q 021709          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAA-----STM-------MQK  286 (308)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~~~~~~~~~-----~~~-------~~~  286 (308)
                      ...|+++-.+...++-|.....+-..|+|+.|.+-|+||..||++.+++....+....+...     ...       .-+
T Consensus       142 av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~Ie  221 (293)
T COG4535         142 AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIE  221 (293)
T ss_pred             ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccHH
Confidence            78899999999999999999988899999999999999999999999987776543332211     111       135


Q ss_pred             HHHhhccCCCCCchhhhcccc
Q 021709          287 FWDSAMALSPNDDEEDNRRFY  307 (308)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~  307 (308)
                      -+|....++-+++|+||.+|-
T Consensus       222 dFNe~F~t~FsDeevDTIGGL  242 (293)
T COG4535         222 DFNEAFGTHFSDEEVDTIGGL  242 (293)
T ss_pred             HHHHHhcCCCChhhhhhhhHH
Confidence            678888999999999999874

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.21  E-value=3.2e-10  Score=85.04  Aligned_cols=103  Identities=16%  Similarity=0.252  Sum_probs=83.8

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCC
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI  125 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (308)
                      ++.++.+++++.++++.|.+++...+||+|+    |+++|+++..+++...                             
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~-----------------------------   53 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT-----------------------------   53 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence            4678899999999999999999999999984    8999999998875210                             


Q ss_pred             CChhHHHHHHHHHhcCCCcccccCCCCceeEeC--CCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS--PTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                   ....++.++|.  ..+..+.  +++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus        54 -------------~~~~~v~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~  112 (114)
T cd04602          54 -------------DSETPLSEVMT--PREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK  112 (114)
T ss_pred             -------------ccCCCHHHhcC--CCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence                         01123556665  4455554  499999999999999999999998 78999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.20  E-value=9.2e-10  Score=101.62  Aligned_cols=174  Identities=14%  Similarity=0.195  Sum_probs=131.4

Q ss_pred             EEEEehhHHHHHHHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHH
Q 021709           19 CGILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLY   94 (308)
Q Consensus        19 ~Giit~~D~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~   94 (308)
                      .|.+...+-  .++.+-.++.+.+++++|.+  +++.++.+.++.++.+.+.+++++++||.+  .+.++|+++.+|++.
T Consensus       186 ~g~~~~~E~--~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~  263 (429)
T COG1253         186 EGVLEEEER--EMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR  263 (429)
T ss_pred             cCCcCHHHH--HHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence            566776665  67777788899999999985  678999999999999999999999999998  378999999999987


Q ss_pred             HHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcC
Q 021709           95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR  174 (308)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  174 (308)
                      .....-.                                       .......+   .+++.+++++++.++++.|++.+
T Consensus       264 ~~~~~~~---------------------------------------~~~~~~~~---~~~~~Vpet~~~~~lL~~~r~~~  301 (429)
T COG1253         264 ALLDGQS---------------------------------------DLDLRVLV---RPPLFVPETLSLSDLLEEFREER  301 (429)
T ss_pred             HHhcCcc---------------------------------------ccchhhcc---cCCeEecCCCcHHHHHHHHHHhC
Confidence            6332100                                       00001111   37999999999999999999999


Q ss_pred             CcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccc----cccccccccCceeecCCCCHHHHHHHHHh
Q 021709          175 LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS----TLVEKVMTPNPECATIDTPIVDALHIMHD  237 (308)
Q Consensus       175 ~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~----~~v~~~~~~~~~~v~~~~~l~~~~~~~~~  237 (308)
                      .+.+.|+| .|...|+||..|++..+..+-.+..+    ..+....... ..++...++.++.+.+.-
T Consensus       302 ~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~-~~v~G~~~l~e~~~~l~~  368 (429)
T COG1253         302 THMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDG-WLVDGRVPLEELEELLGI  368 (429)
T ss_pred             CeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCc-EEEeccccHHHHHHHhCC
Confidence            99999999 89999999999998666643322211    1222222223 567888888888877644

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.20  E-value=1.2e-10  Score=87.05  Aligned_cols=92  Identities=36%  Similarity=0.569  Sum_probs=78.6

Q ss_pred             CCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-C
Q 021709            2 AARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N   80 (308)
Q Consensus         2 ~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~   80 (308)
                      .+++.+.++|++++++++|+++..++.+ ...........++.++|.+++.++.+++++.++++.|.+++...+||++ +
T Consensus        21 ~~~~~~~~~v~d~~~~~~G~v~~~~i~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~   99 (114)
T cd04604          21 SRKGLGMTAVVDEDGRLVGIFTDGDLRR-ALEKGLDILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDN   99 (114)
T ss_pred             HhcCccEEEEEcCCCCEEEEechHHHHH-HHhccCccccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC
Confidence            3456789999998899999999999984 4444334444579999998999999999999999999999999999998 7


Q ss_pred             CeEEEEEeHHHHHH
Q 021709           81 GEVIALLDIAKCLY   94 (308)
Q Consensus        81 ~~~vGivs~~dll~   94 (308)
                      ++++|+++..++++
T Consensus       100 ~~~iG~it~~di~~  113 (114)
T cd04604         100 GRPVGVLHIHDLLR  113 (114)
T ss_pred             CCEEEEEEHHHhhc
Confidence            99999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.20  E-value=4.3e-10  Score=85.06  Aligned_cols=117  Identities=26%  Similarity=0.360  Sum_probs=90.0

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.+++++.++.+|++.|.+.+.+.+||++ +++++|+++..++.+.........                         
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~-------------------------   56 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTL-------------------------   56 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccc-------------------------
Confidence            567899999999999999999999999998 599999999999865421110000                         


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                        ..... ......++.++|.  ..+.++.+++++.++++.|.+.+.+.+||+++++++|++|..|++
T Consensus        57 --~~~~~-~~~~~~~v~~~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~  119 (121)
T cd04584          57 --SEHEL-YLLLKMPVKEIMT--KDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL  119 (121)
T ss_pred             --hhhhh-hhhcCcCHHHHhh--CCCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence              00000 0112234556665  678999999999999999999999999999888999999999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.20  E-value=2.4e-10  Score=88.41  Aligned_cols=98  Identities=30%  Similarity=0.297  Sum_probs=78.0

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccc----------ccccccc------
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS----------TLVEKVM------  215 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~----------~~v~~~~------  215 (308)
                      ++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|+++...........          ..+.++|      
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~   81 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY   81 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence            578899999999999999988999999999 79999999999997544332221100          1123344      


Q ss_pred             ---ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCC
Q 021709          216 ---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG  250 (308)
Q Consensus       216 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~  250 (308)
                         ..++.++.+++++.++++.|.+++.+.+||+|+.+
T Consensus        82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence               45788999999999999999999999999998543

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.20  E-value=2.3e-10  Score=106.08  Aligned_cols=114  Identities=20%  Similarity=0.307  Sum_probs=96.9

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (308)
                      .+++.|.+++++++++.++.+++++|.+++++++||+++    ++++|+++.+|++...                     
T Consensus        81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~---------------------  139 (450)
T TIGR01302        81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK---------------------  139 (450)
T ss_pred             cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence            356678889999999999999999999999999999984    5999999999986320                     


Q ss_pred             hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                           ....++.++|.+ .++.++++++++.++++.|.+++.+.+||+| +|+++|+||.+|++
T Consensus       140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl  197 (450)
T TIGR01302       140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV  197 (450)
T ss_pred             ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence                                 012346667752 3799999999999999999999999999999 89999999999997


Q ss_pred             HH
Q 021709          197 MR  198 (308)
Q Consensus       197 ~~  198 (308)
                      +.
T Consensus       198 ~~  199 (450)
T TIGR01302       198 KR  199 (450)
T ss_pred             hc
Confidence            44

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=6.4e-10  Score=82.14  Aligned_cols=102  Identities=26%  Similarity=0.353  Sum_probs=84.7

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++.++.++.+++..|.+.+...+||++ +++++|+++..+++...                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~--------------------------------   49 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP--------------------------------   49 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence            467889999999999999998999999998 58999999999986320                                


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                                 ...++.++|.  .++.++.+++++.++++.|.+.+.+.+||+++++++|++|..|++
T Consensus        50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~  104 (106)
T cd04638          50 -----------EEEQLALLMT--RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV  104 (106)
T ss_pred             -----------ccchHHHHhc--CCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence                       0011333443  568889999999999999999999999999977999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.18  E-value=3.3e-10  Score=84.09  Aligned_cols=104  Identities=23%  Similarity=0.359  Sum_probs=84.8

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      +++.++.++.++.++++.|.+++...+||++ +|+++|+++..++....                               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------   50 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-------------------------------   50 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence            4678899999999999999999999999998 58999999998875210                               


Q ss_pred             hhHHHHHHHHHhcCCCcccccCCCCceeEeCC-CCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISP-TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                 ....++.++|.  ..+..+.+ ++++.++++.|.+.+.+.+||++ +++++|++|.+|++
T Consensus        51 -----------~~~~~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil  108 (110)
T cd04601          51 -----------DLDKPVSEVMT--PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE  108 (110)
T ss_pred             -----------cCCCCHHHhcc--cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence                       01123555664  44555566 99999999999999999999998 78999999999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.17  E-value=1.7e-10  Score=100.21  Aligned_cols=111  Identities=16%  Similarity=0.198  Sum_probs=93.7

Q ss_pred             cccccccccC-ceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           41 TPVSKVMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        41 ~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      .+++++|.++ +.++.+++++.++++.|.+.+++.+||++ +|+++|+++..|+.+....                    
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~--------------------  214 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG--------------------  214 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence            4688999888 99999999999999999999999999998 6899999999998753110                    


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEee
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  191 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt  191 (308)
                                        ......++.++|.  +++.++.+++++.++++.|.+.+...+||++ +|+++|+|+
T Consensus       215 ------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       215 ------------------GGSLKSEVRDFMT--LGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ------------------CCcccCcHHHhCC--CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                              0011234677776  6788999999999999999999999999998 789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.16  E-value=1.1e-10  Score=76.16  Aligned_cols=56  Identities=34%  Similarity=0.571  Sum_probs=52.6

Q ss_pred             cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       211 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      ++++|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++.
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            45788999999999999999999999999999999999999999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.15  E-value=1.3e-09  Score=82.16  Aligned_cols=111  Identities=16%  Similarity=0.184  Sum_probs=86.3

Q ss_pred             CceEEeCCCcHHHHHHHhHhCC-CcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~-~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++++++++.++++.|...+ +..+||+++|+++|+++..++.+......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~----------------------------   53 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPY----------------------------   53 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchh----------------------------
Confidence            5668899999999999998876 88999998899999999999875422100                            


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCc---EEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS---SAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~V~~-~~~~~Givt~~dl~  196 (308)
                            ........++.++|.  .++.++.+++++.+++..|.+.+..   ..+|++ +|+++|++|..|++
T Consensus        54 ------~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~  117 (119)
T cd04598          54 ------GRALYGKKPVSEVMD--PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL  117 (119)
T ss_pred             ------hHHHHcCCcHHHhcC--CCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence                  001122334677776  6799999999999999999987753   335666 89999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.15  E-value=1e-09  Score=81.41  Aligned_cols=106  Identities=24%  Similarity=0.314  Sum_probs=83.9

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN  129 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (308)
                      ++.+++++.++.++.+.|.+++.+.+||+++++++|+++..++.+.......                            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~----------------------------   53 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGKA----------------------------   53 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcccc----------------------------
Confidence            4678999999999999999999999999988999999999998764221100                            


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                               ....++.++|.  .++.++++++++.++.+.|.+ .. .+||++ +++++|++|.+|++
T Consensus        54 ---------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~  108 (110)
T cd04609          54 ---------KFSLPVREVMG--EPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLL  108 (110)
T ss_pred             ---------ccCcCHHHHhc--CCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhh
Confidence                     00123455564  568889999999999999988 33 367777 79999999999985

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.14  E-value=5.8e-10  Score=104.17  Aligned_cols=144  Identities=22%  Similarity=0.248  Sum_probs=105.9

Q ss_pred             CCCCcEEEEEehhHHHHHH--HHh-----ccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEE
Q 021709           13 DSNALLCGILTDKDIATRV--IAR-----ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVI   84 (308)
Q Consensus        13 ~~~~~~~Giit~~D~~~~~--~~~-----~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~v   84 (308)
                      |...++..-+-..++++..  ..+     ..-+.+.+++++|.+++.++.+++++.++++.|.++++..+||++ +++++
T Consensus       300 d~g~~y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~  379 (454)
T TIGR01137       300 DSIRNYMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVL  379 (454)
T ss_pred             CCCccccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEE
Confidence            3344565555445655432  111     112556789999999999999999999999999999999999998 58999


Q ss_pred             EEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHH
Q 021709           85 ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVL  164 (308)
Q Consensus        85 Givs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~  164 (308)
                      |+++..++++......                                     .....++.++|.  .++.++++++++.
T Consensus       380 Givt~~dl~~~~~~~~-------------------------------------~~~~~~v~~im~--~~~~~v~~~~~l~  420 (454)
T TIGR01137       380 GSVTLRELLSALFAGK-------------------------------------ANPDDAVSKVMS--KKFIQIGEGEKLS  420 (454)
T ss_pred             EEEEHHHHHHHHhccC-------------------------------------CCcCCCHHHhcC--CCCeEECCcCcHH
Confidence            9999999876422100                                     011224667776  6788999999999


Q ss_pred             HHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHH
Q 021709          165 MATKKMLELRLSSAVVTVENKPRGILTSKDILM  197 (308)
Q Consensus       165 ~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~  197 (308)
                      ++++.|.+++  ..+|+++++++|+||.+|++.
T Consensus       421 ~a~~~~~~~~--~~vV~~~g~liGvvt~~dll~  451 (454)
T TIGR01137       421 DLSKFLEKNS--SAIVTEEGKPIGVVTKIDLLS  451 (454)
T ss_pred             HHHHHHHHCC--eeEEEECCEEEEEEEHHHHHH
Confidence            9999998753  345555899999999999973

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.14  E-value=1.1e-10  Score=102.08  Aligned_cols=108  Identities=31%  Similarity=0.366  Sum_probs=97.3

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee----CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCC
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP  227 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~----~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~  227 (308)
                      .+++.++|+.++.++++....+++..+|+++    +++++|+||.+|+ ..+     .....+++++|.+.+.+.++..+
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~-----~~~~~~~~~vmt~~~~~~~~gi~  189 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL-----EDNSLLVSDVMTKNPVTGAQGIT  189 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh-----hcccchhhhhccccccccccccc
Confidence            5789999999999999999999999999996    5689999999999 344     22256889999999999999999


Q ss_pred             HHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          228 IVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       228 l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      +.++-+++.+++...+||||++|.++.+|+++|+.+..
T Consensus       190 l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  190 LKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             HHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence            99999999999999999999999999999999999743

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.10  E-value=4.7e-09  Score=94.72  Aligned_cols=196  Identities=20%  Similarity=0.242  Sum_probs=141.6

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (308)
                      ...+.++...++.+|+..+..++.+..|+++  ...++|+++..|++...........                      
T Consensus        76 ~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~----------------------  133 (381)
T KOG1764|consen   76 SKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS----------------------  133 (381)
T ss_pred             ceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC----------------------
Confidence            4678899999999999999999999999998  4889999999999877654433200                      


Q ss_pred             ChhHHHHHHHHHh-cCCCcccc--cCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHh
Q 021709          127 GPNTFIETLRERM-FRPSLSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVIS  201 (308)
Q Consensus       127 ~~~~~~~~~~~~~-~~~~v~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~  201 (308)
                      ........-.... ....+..+  ....+++..+.+..++.++...+.+.+++++||.|  .+.+..++|.+-++..+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~  213 (381)
T KOG1764|consen  134 SLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWL  213 (381)
T ss_pred             cHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHH
Confidence            0000000000001 11111000  00113449999999999999999999999999998  6799999999999744443


Q ss_pred             cCCCc-----ccccccccc---ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          202 QNLPA-----DSTLVEKVM---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       202 ~~~~~-----~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      .....     ...+++++-   -.+...+..++++.+|+++|...+++.+||||++|+.+|+++..|+.....
T Consensus       214 ~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~  286 (381)
T KOG1764|consen  214 NGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAR  286 (381)
T ss_pred             hhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhh
Confidence            32222     112222221   136788999999999999999999999999999999999999999997554

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=3.5e-09  Score=78.32  Aligned_cols=108  Identities=27%  Similarity=0.339  Sum_probs=87.0

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.+++++.++.++++.|.+++...+||+++ ++++|+++..++..........                          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~--------------------------   55 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD--------------------------   55 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC--------------------------
Confidence            5678899999999999999999999999984 8999999999997653211000                          


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                 ....+.+++.  .++..+.++.++.++++.|.+.+.+.+||++ +++++|+++..|++
T Consensus        56 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~  111 (113)
T cd02205          56 -----------PLVTVGDVMT--RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL  111 (113)
T ss_pred             -----------ccccHHHHhc--CCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence                       0000233444  5788899999999999999999999999998 79999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.06  E-value=3.6e-09  Score=91.96  Aligned_cols=164  Identities=15%  Similarity=0.146  Sum_probs=126.0

Q ss_pred             hccCCcccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHhHHH
Q 021709           34 RELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKA  109 (308)
Q Consensus        34 ~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~~~~  109 (308)
                      .-.++++.+|+|+|.  .++..++.+++..+.++-+....+.++|++++  +.++|++..+++++.+.+.-.-.      
T Consensus       193 gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~------  266 (423)
T COG4536         193 GVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFT------  266 (423)
T ss_pred             cccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCccc------
Confidence            445788999999997  47889999999999999999999999999974  67999999999998765421100      


Q ss_pred             HHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEE
Q 021709          110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG  188 (308)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~G  188 (308)
                                        ..+             +..+.   .++..+++++++.+-+..|.+++-+...|+| .|.+.|
T Consensus       267 ------------------k~d-------------~~~~a---~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~G  312 (423)
T COG4536         267 ------------------KED-------------ILRAA---DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQG  312 (423)
T ss_pred             ------------------HhH-------------HHHHh---cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEe
Confidence                              000             11111   5799999999999999999999999999999 899999


Q ss_pred             EeeHHHHHHHHHhcCCCccccccccccc--cCceeecCCCCHHHHHHHHHh
Q 021709          189 ILTSKDILMRVISQNLPADSTLVEKVMT--PNPECATIDTPIVDALHIMHD  237 (308)
Q Consensus       189 ivt~~dl~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~  237 (308)
                      +||..|++..+.....+......+++..  ..-+.++.+.++.+.-+.|.-
T Consensus       313 LVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W  363 (423)
T COG4536         313 LVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVRDLNRALDW  363 (423)
T ss_pred             eeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHHHHHHhcCC
Confidence            9999999988876544333333333332  244667888888888877754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.05  E-value=1.5e-08  Score=91.27  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=90.8

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHH
Q 021709          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL  232 (308)
Q Consensus       154 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  232 (308)
                      .....++.+..++++.|...+...++|++ ++++.|.++..++. ......     ..+.+.+.....++++++++.+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  325 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKKA-----QGLQDVLIDDIYTVDAGTLLRETV  325 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhcC-----CchhhhhccCCceECCCCcHHHHH
Confidence            34566777899999999998998999998 89999999999984 444322     245666777888999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          233 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       233 ~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ..|..++.. +||+|++|+++|+||..++++++..
T Consensus       326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            999999998 9999999999999999999987754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.90  E-value=1.7e-08  Score=78.08  Aligned_cols=114  Identities=15%  Similarity=0.008  Sum_probs=76.6

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCCh
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP  128 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (308)
                      ++.++.+++++.+|++.|.++++..+||+| +|+++|+++..|+++..............          ..++      
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~----------~~~~------   65 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPED----------ETKQ------   65 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccch----------hhcc------
Confidence            578999999999999999999999999998 58999999999998754321000000000          0000      


Q ss_pred             hHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee
Q 021709          129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV  182 (308)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~  182 (308)
                       .........+....+.+.|.  .+++++.+++++.++++.|.+++++++||++
T Consensus        66 -~~~~~v~~i~~~~~~~~~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd  116 (133)
T cd04592          66 -TNTCLVSSVCTKGISYGGQE--CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK  116 (133)
T ss_pred             -cccccHHHHhhhhhhhcccC--CCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence             00000011111111222233  5688999999999999999999999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.89  E-value=6.5e-09  Score=67.69  Aligned_cols=54  Identities=30%  Similarity=0.453  Sum_probs=50.4

Q ss_pred             cccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHH
Q 021709           43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDA   96 (308)
Q Consensus        43 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~   96 (308)
                      ++++|.++++++++++++.++++.|.+++++.+||++ +|+++|+++.+|+++..
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            4688999999999999999999999999999999996 79999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=9.7e-08  Score=87.01  Aligned_cols=104  Identities=18%  Similarity=0.191  Sum_probs=88.5

Q ss_pred             eCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHH
Q 021709          157 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIM  235 (308)
Q Consensus       157 v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~  235 (308)
                      ..++.+..+++..|...+.+.++|++ ++++.|+++..++. +.....     .++...+.....++..++++.+++..+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQQ-----QGLDAALIDAPLAVDAQTPLSELLSHV  363 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhcC-----CchhhhhccCCceeCCCCCHHHHHHHH
Confidence            44667889999999999999999999 89999999999994 443321     245666677888999999999999999


Q ss_pred             HhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          236 HDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       236 ~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ..+... +||+|++|+++|+||..++++++..
T Consensus       364 ~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        364 GQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             HhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            998876 9999999999999999999987753

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.82  E-value=3.1e-08  Score=90.62  Aligned_cols=121  Identities=21%  Similarity=0.277  Sum_probs=101.2

Q ss_pred             hccCCcccccccccccCceEEeCCCcHHHHHHHhHh-----CCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhH
Q 021709           34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKG  107 (308)
Q Consensus        34 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~-----~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~  107 (308)
                      .......-+++.+|...++++.++.|+.+++.++.+     ..++.+.|+| +++++|+++.++++.+            
T Consensus       125 ~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a------------  192 (451)
T COG2239         125 QLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA------------  192 (451)
T ss_pred             HhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC------------
Confidence            344556668999999999999999999999999984     3467788898 6889999999999743            


Q ss_pred             HHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEE
Q 021709          108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP  186 (308)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~  186 (308)
                                         .            ...++.++|.  +.++++.+++.-+++.+.+.+++.-++||+| ++++
T Consensus       193 -------------------~------------~~~~i~~im~--~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~L  239 (451)
T COG2239         193 -------------------E------------PDELLKDLME--DDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRL  239 (451)
T ss_pred             -------------------C------------cHhHHHHHhc--ccceeecccCCHHHHHHHHHHhCCeecceECCCCce
Confidence                               0            1122566776  5699999999999999999999999999999 8999


Q ss_pred             EEEeeHHHHHHHH
Q 021709          187 RGILTSKDILMRV  199 (308)
Q Consensus       187 ~Givt~~dl~~~~  199 (308)
                      +|++|..|++.-+
T Consensus       240 iG~itiDDiidvi  252 (451)
T COG2239         240 IGIITIDDIIDVI  252 (451)
T ss_pred             eeeeeHHHHHHHH
Confidence            9999999997433

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.58  E-value=1.2e-07  Score=87.45  Aligned_cols=124  Identities=13%  Similarity=0.206  Sum_probs=103.8

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee---C---CEEEEEeeHHHHHHHHHhcCCCc------
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---E---NKPRGILTSKDILMRVISQNLPA------  206 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~---~~~~Givt~~dl~~~~~~~~~~~------  206 (308)
                      +....+.++|.  .+++++...+.+..+.+.+.++.++.+||+|   .   +++.|+|=+.+++ .++.+....      
T Consensus       579 mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCccc
Confidence            44455788887  7999999999999999999999999999998   2   4789999999996 554331100      


Q ss_pred             --------------------------------cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEE
Q 021709          207 --------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD  254 (308)
Q Consensus       207 --------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iG  254 (308)
                                                      ...++..+|++.|.+|++++++..++.+|.+-+.+++.||+..++.+|
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~g  735 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVG  735 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeE
Confidence                                            014667788999999999999999999999999999999999999999


Q ss_pred             EEEhhHHHHHH
Q 021709          255 VVDVIHITHAA  265 (308)
Q Consensus       255 iit~~di~~~~  265 (308)
                      ++|++|+.++-
T Consensus       736 ilTR~D~~~~~  746 (762)
T KOG0474|consen  736 ILTRKDLARYR  746 (762)
T ss_pred             EEehhhhhhHH
Confidence            99999999643

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.56  E-value=4.3e-06  Score=75.37  Aligned_cols=148  Identities=16%  Similarity=0.218  Sum_probs=104.2

Q ss_pred             cCEEEEECCCCcEEEEEehhHHHHH--------HHHhccCCcccccccc---cccCceEEeCCCcHHHHHHHhHhCCCcE
Q 021709            6 VDALLLTDSNALLCGILTDKDIATR--------VIARELNLEETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRH   74 (308)
Q Consensus         6 ~~~~~V~~~~~~~~Giit~~D~~~~--------~~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~~~~~   74 (308)
                      ++.+.+++ +|+++..-+..+++..        +.............++   +........++.+..+++..|...+...
T Consensus       197 ~drI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (363)
T TIGR01186       197 GDRIVIMK-AGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDS  275 (363)
T ss_pred             CCEEEEEe-CCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCce
Confidence            45666775 6889888888887642        1111100111122222   3333345666778999999999999999


Q ss_pred             eeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCc
Q 021709           75 LPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK  153 (308)
Q Consensus        75 ~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  153 (308)
                      +.|++ ++++.|.++..++..+.-.                                          ...+.+.+.  ..
T Consensus       276 ~~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~~~~~~~~~--~~  311 (363)
T TIGR01186       276 LYVVDRQNKLVGVVDVESIKQARKK------------------------------------------AQGLQDVLI--DD  311 (363)
T ss_pred             EEEEcCCCCEEEEEeHHHHHHHhhc------------------------------------------CCchhhhhc--cC
Confidence            99998 6899999998887543110                                          111333343  56


Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (308)
Q Consensus       154 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~  199 (308)
                      ..++++++++.+++..+.+++.. +||++ +|+++|+||..+++..+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       312 IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL  357 (363)
T ss_pred             CceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence            78899999999999999999998 99999 89999999999997444

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=6.1e-06  Score=75.37  Aligned_cols=148  Identities=11%  Similarity=0.101  Sum_probs=103.8

Q ss_pred             cCEEEEECCCCcEEEEEehhHHHHH--------HHHhccCCcc-cccccccccCc---eEEeCCCcHHHHHHHhHhCCCc
Q 021709            6 VDALLLTDSNALLCGILTDKDIATR--------VIARELNLEE-TPVSKVMTRNP---TFVLSDTLAVEALQKMVQGKFR   73 (308)
Q Consensus         6 ~~~~~V~~~~~~~~Giit~~D~~~~--------~~~~~~~~~~-~~v~~im~~~~---~~v~~~~~l~~a~~~m~~~~~~   73 (308)
                      ++.+.+++ +|+++..-+..++...        ++.. .+... .++.++|.+..   +...++.+..+++..|...+..
T Consensus       232 ~Dri~vL~-~G~i~~~g~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (400)
T PRK10070        232 GDRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRG-VDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDRE  309 (400)
T ss_pred             CCEEEEEE-CCEEEecCCHHHHHhCcccHHHHHHHhc-cccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCc
Confidence            45666666 5777766666666531        1111 11111 35666775432   2334667889999999999999


Q ss_pred             EeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCC
Q 021709           74 HLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS  152 (308)
Q Consensus        74 ~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  152 (308)
                      .+.|+| ++++.|+++..++.+..-                                          ....+.+.+.  .
T Consensus       310 ~~~~~~~~~~~~g~~~~~~~~~~~~------------------------------------------~~~~~~~~~~--~  345 (400)
T PRK10070        310 YGYVIERGNKFVGAVSIDSLKTALT------------------------------------------QQQGLDAALI--D  345 (400)
T ss_pred             eEEEEcCCCcEEEEEeHHHHHhhhh------------------------------------------cCCchhhhhc--c
Confidence            999998 699999999999864311                                          0011333333  5


Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHH
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~  200 (308)
                      ...++.+++++.+++..+.+.... +||++ +|+++|+||..+++..+.
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        346 APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            678999999999999999987766 99999 899999999999974443

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.49  E-value=1.3e-06  Score=75.11  Aligned_cols=166  Identities=17%  Similarity=0.262  Sum_probs=115.8

Q ss_pred             ccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCC
Q 021709           48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG  127 (308)
Q Consensus        48 ~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (308)
                      .+.+++++.+  +.||+++     -+++.+.++|+++.+-+..+++.+                               +
T Consensus       215 ~KTIvFitHD--LdEAlri-----G~rIaimkdG~ivQ~Gtp~eIl~~-------------------------------P  256 (386)
T COG4175         215 KKTIVFITHD--LDEALRI-----GDRIAIMKDGEIVQVGTPEEILLN-------------------------------P  256 (386)
T ss_pred             CCeEEEEecC--HHHHHhc-----cceEEEecCCeEEEeCCHHHHHcC-------------------------------c
Confidence            4667777666  7788777     467889999999999999999854                               1


Q ss_pred             hhHHHHHHHHHhcC---CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC
Q 021709          128 PNTFIETLRERMFR---PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN  203 (308)
Q Consensus       128 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~  203 (308)
                      .+++...+-.....   .+..++|.+......-.+...-..+.+.+.+.....+.+++ +++.+|+++..+....     
T Consensus       257 AndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-----  331 (386)
T COG4175         257 ANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA-----  331 (386)
T ss_pred             cHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc-----
Confidence            22333333222222   23466776311222222223345677777777766677777 7779999999888511     


Q ss_pred             CCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       204 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                                .+...+.++..++++.+.+..+.+.+. .++|+|++|+++|+|+...++.++..
T Consensus       332 ----------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 ----------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             ----------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence                      345677888899999999988888765 67899999999999999999987653

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.47  E-value=2.8e-07  Score=85.11  Aligned_cols=154  Identities=17%  Similarity=0.143  Sum_probs=102.9

Q ss_pred             ccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC------CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021709           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN------GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (308)
Q Consensus        40 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~------~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~  113 (308)
                      +..++++|.+++++++.-+.+....+.+..+.++.+||+|+      +++.|++-++.++..+..+..... .......+
T Consensus       581 ~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~-~~~~~~~~  659 (762)
T KOG0474|consen  581 NLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEE-SRSTFDLP  659 (762)
T ss_pred             hhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhcc-CccccCcc
Confidence            45789999999999999999999999999999999999973      468898888887655443321110 00000000


Q ss_pred             hh-hh-hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEe
Q 021709          114 VE-GV-EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL  190 (308)
Q Consensus       114 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Giv  190 (308)
                      .. .. ..........-++......+.---..+..+|.  +.+.++++++++..++.+|+..+.+++.|+. .++.+|++
T Consensus       660 ~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n--~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gil  737 (762)
T KOG0474|consen  660 VRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMN--PSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGIL  737 (762)
T ss_pred             hhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccC--CCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEE
Confidence            00 00 00000011111111111111111223667776  7899999999999999999999999999998 77789999


Q ss_pred             eHHHHH
Q 021709          191 TSKDIL  196 (308)
Q Consensus       191 t~~dl~  196 (308)
                      |++|+.
T Consensus       738 TR~D~~  743 (762)
T KOG0474|consen  738 TRKDLA  743 (762)
T ss_pred             ehhhhh
Confidence            999996

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.45  E-value=2.7e-07  Score=75.48  Aligned_cols=160  Identities=14%  Similarity=0.128  Sum_probs=117.0

Q ss_pred             hccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHH
Q 021709           34 RELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKA  109 (308)
Q Consensus        34 ~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~~~~~~~~~~~~~~~~  109 (308)
                      ...+.++..+.|+|.+  ..++++.+.++.+.+..+.+...+++||+.  .+.+.|++...|+++.+...-         
T Consensus        60 Gvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~---------  130 (293)
T COG4535          60 GVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA---------  130 (293)
T ss_pred             HHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc---------
Confidence            3345677889999974  578999999999999999999999999996  367999999999987633110         


Q ss_pred             HHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEE
Q 021709          110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG  188 (308)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~G  188 (308)
                                                    ....+.++.   ++.+.++++..+...++-|..++.+.++|+| -|.+.|
T Consensus       131 ------------------------------~~F~i~~lL---RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsG  177 (293)
T COG4535         131 ------------------------------EPFDIKELL---RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSG  177 (293)
T ss_pred             ------------------------------ccccHHHhc---ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeee
Confidence                                          001133333   5688999999999999999999999999999 888999


Q ss_pred             EeeHHHHHHHHHhcCCCcc----ccccccccccCceeecCCCCHHHHHHHHH
Q 021709          189 ILTSKDILMRVISQNLPAD----STLVEKVMTPNPECATIDTPIVDALHIMH  236 (308)
Q Consensus       189 ivt~~dl~~~~~~~~~~~~----~~~v~~~~~~~~~~v~~~~~l~~~~~~~~  236 (308)
                      +||-.|++..+...-.+..    ...+..+ .+....|..=+++++--+.|-
T Consensus       178 LVTIEDiLEqIVGdIEDE~Deee~~dI~~l-s~~~~~VrALT~IedFNe~F~  228 (293)
T COG4535         178 LVTIEDILEQIVGDIEDEYDEEEDADIRQL-SRHTWRVRALTEIEDFNEAFG  228 (293)
T ss_pred             eEEHHHHHHHHhcccccccchhhhhhhHhh-cCCceEEEecccHHHHHHHhc
Confidence            9999999977664322211    1112222 235555666666666555543

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.31  E-value=1.4e-06  Score=65.19  Aligned_cols=55  Identities=29%  Similarity=0.579  Sum_probs=50.9

Q ss_pred             cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      .++.++|.+++.++..++++.++++.|...+.+.+||+|++|+++|+||..||.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            4688899889999999999999999999999999999999999999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.17  E-value=2.3e-05  Score=72.80  Aligned_cols=112  Identities=11%  Similarity=0.202  Sum_probs=89.0

Q ss_pred             ceeEeCCC-CcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHHHHHHhcC-CC---------------------c
Q 021709          153 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN-LP---------------------A  206 (308)
Q Consensus       153 ~~~~v~~~-~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~~~~~~~~-~~---------------------~  206 (308)
                      ...++..+ +++.+....|.+..++.+||+-   .++++|++.++|+...+.... .+                     +
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~  636 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP  636 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence            34555554 8999999999999998888863   678999999999975555221 10                     1


Q ss_pred             cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       207 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      .....+++|+..|.++...++++.++.++.+.+.+...|. ++|++.|+||++|+++..
T Consensus       637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence            1234567888899999999999999999999999888665 689999999999999753

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.12  E-value=8.2e-06  Score=72.04  Aligned_cols=104  Identities=15%  Similarity=0.200  Sum_probs=89.5

Q ss_pred             cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCC
Q 021709           49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS  124 (308)
Q Consensus        49 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (308)
                      .+++++.|..++.++++....+++..+||.++    +|++|+|+.+|+-..                             
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-----------------------------  166 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-----------------------------  166 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence            46789999999999999999999999999974    689999999997421                             


Q ss_pred             CCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                   .-....+.++|+  ++.++.+.+.++.++-+++.+.+-..+||++ +|+++.+++++|+.
T Consensus       167 -------------~~~~~~~~~vmt--~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~  224 (503)
T KOG2550|consen  167 -------------EDNSLLVSDVMT--KNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM  224 (503)
T ss_pred             -------------hcccchhhhhcc--cccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh
Confidence                         012234778887  5669999999999999999999999999999 99999999999995

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.06  E-value=1.6e-05  Score=48.74  Aligned_cols=46  Identities=30%  Similarity=0.472  Sum_probs=41.8

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (308)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~  264 (308)
                      +.++.+++++.++.+.|...+.+.+||++++++++|+++..++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            5678889999999999999999999999988999999999999864

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.99  E-value=1.4e-05  Score=59.78  Aligned_cols=53  Identities=26%  Similarity=0.412  Sum_probs=49.4

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHH
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCL   93 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll   93 (308)
                      .+++++|.+++.++++++++.++++.|.+++...+||++ +|+++|+++..++.
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence            579999999999999999999999999999999999998 68999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.85  E-value=8.2e-05  Score=69.31  Aligned_cols=130  Identities=15%  Similarity=0.146  Sum_probs=89.3

Q ss_pred             ceEEeC-CCcHHHHHHHhHhCCCcEeeEe-e--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCC
Q 021709           51 PTFVLS-DTLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS  126 (308)
Q Consensus        51 ~~~v~~-~~~l~~a~~~m~~~~~~~~pVv-d--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (308)
                      ..++.. ++++.+...+|.+..++.+||+ +  .+.++|++..+++..........+.....          ...  ...
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~----------~~~--~f~  625 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVT----------TSI--YFN  625 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcccccccee----------ccc--ccC
Confidence            444444 5899999999999999999998 3  47899999999987654422111110000          000  000


Q ss_pred             ChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                      .+..  ......-.....+++|.  ..+.++...++++.+.+++.+.+.+...|.++|++.|+||++|++
T Consensus       626 ~~~~--~~~~~~~~~~~lk~il~--~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l  691 (696)
T KOG0475|consen  626 DPSP--SAVAGIPSRLDLKDILD--MTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCL  691 (696)
T ss_pred             CCCc--cccCCCCCCcCceeecc--CCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHH
Confidence            0000  00001112233567776  678999999999999999999999999999999999999999997

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.68  E-value=0.00077  Score=61.30  Aligned_cols=83  Identities=22%  Similarity=0.188  Sum_probs=63.3

Q ss_pred             cCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcE
Q 021709          173 LRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDV  252 (308)
Q Consensus       173 ~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~  252 (308)
                      .+.+.++|++.    |+++..+.. .+.....   ...+.+ +..+..++++++++.+++..+..++. .++|+|+ |++
T Consensus       298 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~  366 (382)
T TIGR03415       298 RRDTWLFTIDK----QVRRRDAKL-PVQAWAA---EQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRI  366 (382)
T ss_pred             cccceeEeecc----ceecccchH-hHhhccc---ccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeE
Confidence            67788888876    788877763 4332111   123555 55678899999999999999988776 4788885 999


Q ss_pred             EEEEEhhHHHHHHH
Q 021709          253 VDVVDVIHITHAAV  266 (308)
Q Consensus       253 iGiit~~di~~~~~  266 (308)
                      +|+|+..+++.++.
T Consensus       367 ~g~~~~~~~~~~~~  380 (382)
T TIGR03415       367 VGVIGDDNIYHALL  380 (382)
T ss_pred             EEEEeHHHHHHHHh
Confidence            99999999998764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.50  E-value=0.00044  Score=42.06  Aligned_cols=43  Identities=35%  Similarity=0.423  Sum_probs=39.4

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       154 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                      +.++.+++++.++.+.|.+.+.+.+||++ +++++|+++..+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~   45 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDII   45 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHH
Confidence            56788999999999999999999999998 68999999999995

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.25  E-value=0.0054  Score=55.82  Aligned_cols=140  Identities=9%  Similarity=0.028  Sum_probs=86.0

Q ss_pred             cCEEEEECCCCcEEEEEehhHHHHH----HH---HhccCCc-ccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeE
Q 021709            6 VDALLLTDSNALLCGILTDKDIATR----VI---ARELNLE-ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPV   77 (308)
Q Consensus         6 ~~~~~V~~~~~~~~Giit~~D~~~~----~~---~~~~~~~-~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pV   77 (308)
                      ++.+.+++ +|+++..-+..+++..    +.   ....+.. -.+++++|.+.......+.+  .+++.   ++...+.|
T Consensus       232 ~DrI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~  305 (382)
T TIGR03415       232 GNRIAIME-GGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFT  305 (382)
T ss_pred             CCEEEEEE-CCEEEEecCHHHHhhCcchHHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhhh---cccceeEe
Confidence            45666675 5788888788777521    11   1222222 24678888433333333333  44333   77888888


Q ss_pred             eeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEe
Q 021709           78 VENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTI  157 (308)
Q Consensus        78 vd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v  157 (308)
                      +++    |+++..+.... ...                                       .....+.+ +.  ....++
T Consensus       306 ~~~----~~~~~~~~~~~-~~~---------------------------------------~~~~~~~~-~~--~~~~~~  338 (382)
T TIGR03415       306 IDK----QVRRRDAKLPV-QAW---------------------------------------AAEQEVES-LE--AAPTVI  338 (382)
T ss_pred             ecc----ceecccchHhH-hhc---------------------------------------ccccchhh-hc--ccCccc
Confidence            887    67765554321 000                                       00111222 22  467889


Q ss_pred             CCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHH
Q 021709          158 SPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV  199 (308)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~  199 (308)
                      ++++++.+++..+.+.+.. ++|+++|+++|+|+..+++..+
T Consensus       339 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       339 NPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHAL  379 (382)
T ss_pred             CCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHH
Confidence            9999999999988887765 6777789999999999997433

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.19  E-value=0.011  Score=56.81  Aligned_cols=61  Identities=15%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             CCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC---CeEEEEEeHHHHHHHHH
Q 021709           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAI   97 (308)
Q Consensus        37 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~~vGivs~~dll~~~~   97 (308)
                      ....+.|+++|.+++..+..+.+..|.-+.+..+.++.+|++|+   -.++|.|.++.+...+-
T Consensus       584 ~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~  647 (931)
T KOG0476|consen  584 SVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ  647 (931)
T ss_pred             ceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence            34456789999999999999999999988888777999999973   46899999998876544

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.79  E-value=0.0083  Score=52.25  Aligned_cols=140  Identities=10%  Similarity=0.095  Sum_probs=95.9

Q ss_pred             cCEEEEECCCCcEEEEEehhHHHH--------HHHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEe
Q 021709            6 VDALLLTDSNALLCGILTDKDIAT--------RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHL   75 (308)
Q Consensus         6 ~~~~~V~~~~~~~~Giit~~D~~~--------~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~   75 (308)
                      ++.-+-+-++|+++.+=|..+|+.        .+..+.....-.+.+++|..  ..+.-.+...-..++.++.+.+...+
T Consensus       231 iG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  310 (386)
T COG4175         231 IGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYG  310 (386)
T ss_pred             ccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhh
Confidence            333344445899999999998874        22222222222467888873  22233334445577888888777666


Q ss_pred             eEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCce
Q 021709           76 PVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV  154 (308)
Q Consensus        76 pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  154 (308)
                      .+++ +++.+|+++..+....                                                   .+.  +.+
T Consensus       311 ~~~~~~~~~~g~v~~~~~~~~---------------------------------------------------~~~--~~~  337 (386)
T COG4175         311 YAVDRGNKFVGVVSIDSLVKA---------------------------------------------------ALI--DDV  337 (386)
T ss_pred             HHHhccCceeeEEeccchhcc---------------------------------------------------ccc--ccc
Confidence            6665 6789999998776422                                                   111  578


Q ss_pred             eEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHH
Q 021709          155 VTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (308)
Q Consensus       155 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~  200 (308)
                      .++++++++.+.+....+... .++|++ +++++|+++...++ .++
T Consensus       338 ~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl-~aL  382 (386)
T COG4175         338 LTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELL-EAL  382 (386)
T ss_pred             cccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHH-HHH
Confidence            889999999999998888666 456777 99999999999997 444

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.61  E-value=0.016  Score=49.00  Aligned_cols=105  Identities=19%  Similarity=0.100  Sum_probs=66.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH--------HHHHhcCCCc----cccccccccccCc-
Q 021709          153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQNLPA----DSTLVEKVMTPNP-  219 (308)
Q Consensus       153 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~--------~~~~~~~~~~----~~~~v~~~~~~~~-  219 (308)
                      .++.+.++  +.||+++-     .++.|.++|+++-+-+..+++        ..++..+...    ....+.+.+.... 
T Consensus       188 TivfVTHD--idEA~kLa-----dri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~  260 (309)
T COG1125         188 TIVFVTHD--IDEALKLA-----DRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEP  260 (309)
T ss_pred             EEEEEecC--HHHHHhhh-----ceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccccc
Confidence            35555443  45666432     357788889999999966664        3333222111    1122333332211 


Q ss_pred             ---eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709          220 ---ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (308)
Q Consensus       220 ---~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~  264 (308)
                         ..........+++..+...+...+||+|++|+++|.||..+++..
T Consensus       261 ~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         261 ADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             ccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence               223344555668888888999999999999999999999999863

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.21  E-value=0.28  Score=41.73  Aligned_cols=87  Identities=20%  Similarity=0.233  Sum_probs=59.0

Q ss_pred             CEEEEECCCCcEEEEEehhHHH--------HHHHHhcc----CCcccccccccccCc----eEEeCCCcHHHHHHHhHhC
Q 021709            7 DALLLTDSNALLCGILTDKDIA--------TRVIAREL----NLEETPVSKVMTRNP----TFVLSDTLAVEALQKMVQG   70 (308)
Q Consensus         7 ~~~~V~~~~~~~~Giit~~D~~--------~~~~~~~~----~~~~~~v~~im~~~~----~~v~~~~~l~~a~~~m~~~   70 (308)
                      +.+.|.+ +|+++.+-++.+++        +.++....    .+...++.+.|.+..    -.+.....-.+++..+...
T Consensus       204 dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~  282 (309)
T COG1125         204 DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLAR  282 (309)
T ss_pred             ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhc
Confidence            3456666 68999999966555        34443331    223334555554332    1234455667788888889


Q ss_pred             CCcEeeEee-CCeEEEEEeHHHHHH
Q 021709           71 KFRHLPVVE-NGEVIALLDIAKCLY   94 (308)
Q Consensus        71 ~~~~~pVvd-~~~~vGivs~~dll~   94 (308)
                      +...+||+| +|+++|.++..+++.
T Consensus       283 ~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         283 GRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             CCceeEEECCCCcEeeEEEHHHHhh
Confidence            999999998 799999999999875

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=91.04  E-value=0.82  Score=43.23  Aligned_cols=127  Identities=15%  Similarity=0.176  Sum_probs=92.4

Q ss_pred             HHHhcCCCcccccCCCCceeEeCCCCcHH-HHHHHHHHcCCcEEEEee-C--CEEEEEeeHHHHHHHHHhcCCCcccccc
Q 021709          136 RERMFRPSLSTIIPEKSKVVTISPTDTVL-MATKKMLELRLSSAVVTV-E--NKPRGILTSKDILMRVISQNLPADSTLV  211 (308)
Q Consensus       136 ~~~~~~~~v~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~-~--~~~~Givt~~dl~~~~~~~~~~~~~~~v  211 (308)
                      ...+....++++|.+-..+...+.+..+. +......+.+++++||.+ +  ..+.|.+....+  .+..........++
T Consensus       198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v  275 (498)
T KOG2118|consen  198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPV  275 (498)
T ss_pred             hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccc
Confidence            33344445788888777888888888876 555666688999999998 2  234444444444  33322223335678


Q ss_pred             ccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       212 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      ..++......++.++++.+..+.+.+.+.+.+.|.+ ..--+|+++..|+ ....
T Consensus       276 ~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~  328 (498)
T KOG2118|consen  276 SESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV  328 (498)
T ss_pred             hhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence            888888899999999999999999998888887776 5668999999998 6555

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=86.03  E-value=1.1  Score=43.56  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECC--CCcEEEEEEhhHHHHHHHHHhc
Q 021709          208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDVVDVIHITHAAVATVG  270 (308)
Q Consensus       208 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~iGiit~~di~~~~~~~~~  270 (308)
                      ...++++|.+++..+..++|..+..+.+.....+.+|+||.  +..++|.|.+..+...+-....
T Consensus       587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig  651 (931)
T KOG0476|consen  587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG  651 (931)
T ss_pred             EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence            35688999999999999999999999998888999999974  4479999999999876655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	308
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		1e-08
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		1e-08
2rc3_A	135	Crystal Structure Of Cbs Domain, Ne2398 Length = 13		2e-08
2yzi_A	138	Crystal Structure Of Uncharacterized Conserved Prot		6e-04

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + ALL+ D + +  GI+T++D A +V+ +E + + T V ++MT    +V      
Sbjct: 39  MAEKGIGALLVVDGDDI-AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQST 97
Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98
            E +  M + + RHLPV++ G++I L+ I   +   IA
Sbjct: 98  DECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIA 135

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 54/99 (54%)
Query: 3   ARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVE 62
           A ++ A+++TD++ ++ GI T++D+   V  +     +  VS  MT+N      ++   +
Sbjct: 55  AHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQ 114
Query: 63  ALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            ++ M  G+FRH+PV ENG +  ++ I   +   I  +E
Sbjct: 115 LMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIE 153

>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398 Length = 135

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA  + ALL+     L+ GILT++D + +    +  +++T V ++MTR   +V  +   
Sbjct: 35  MAADNIGALLVMKDEKLV-GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTN 93
Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            + +  + + + RHLPV+++G+VI LL I   + DAI++ +
Sbjct: 94  EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQHQ 134

>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Pyrococcus Horikoshii Length = 138

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 6   VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQ 65
           V +L++ + +  + G  T  DI  RVI   L  +  PV ++ TRN      +T   E L+
Sbjct: 38  VGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IPVERIXTRNLITANVNTPLGEVLR 96
Query: 66  KMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
           K  + + +H+ + E G+++ +  ++  L  +  R+E
Sbjct: 97  KXAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLE 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	4e-35
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	9e-28
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	7e-05
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-30
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-26
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	1e-09
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-04
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-28
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	8e-28
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	9e-08
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-27
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-25
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-10
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-07
4fry_A	157	Putative signal-transduction protein with CBS DOM;	4e-27
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-26
4fry_A	157	Putative signal-transduction protein with CBS DOM;	6e-09
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-26
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-24
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-18
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	6e-25
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	4e-17
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	6e-11
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-04
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-24
1pvm_A	184	Conserved hypothetical protein TA0289; structural	6e-19
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-07
1pvm_A	184	Conserved hypothetical protein TA0289; structural	6e-06
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	7e-24
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	6e-22
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	8e-09
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	9e-06
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-22
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-17
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-10
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	9e-21
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-08
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-20
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	9e-16
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-06
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-20
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-16
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	6e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-20
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-09
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	6e-04
3fio_A	70	A cystathionine beta-synthase domain protein fused	7e-20
3fio_A	70	A cystathionine beta-synthase domain protein fused	4e-13
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	8e-20
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-09
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-04
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	9e-20
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-14
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-13
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-09
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-19
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	8e-12
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	7e-09
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	6e-07
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	4e-19
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-08
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	3e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	3e-04
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-17
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	3e-12
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	8e-09
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-08
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-17
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-16
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	7e-15
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-14
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-16
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-09
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-08
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-06
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-16
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	6e-13
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-09
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-07
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-16
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-09
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	5e-16
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	6e-10
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	4e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	5e-07
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-15
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	5e-09
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	8e-07
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-05
1vr9_A	213	CBS domain protein/ACT domain protein; structural	3e-15
1vr9_A	213	CBS domain protein/ACT domain protein; structural	6e-09
1vr9_A	213	CBS domain protein/ACT domain protein; structural	4e-07
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-06
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-15
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	8e-12
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	5e-15
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	6e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-14
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-06
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-05
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	6e-12
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	5e-11
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-08
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-07
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-04
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	9e-12
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	7e-06
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	1e-05
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	1e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-06
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	4e-09
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	1e-08
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	3e-08
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	8e-08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	2e-07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	7e-07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-06
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	2e-06
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	2e-06
2oux_A	286	Magnesium transporter; 10001B, structural genomics	4e-06
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	6e-06
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	6e-06
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	2e-04

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  123 bits (312), Expect = 4e-35
 Identities = 32/113 (28%), Positives = 60/113 (53%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           + A ++ A+++TD++ ++ GI T++D+   V  +     +  VS  MT+N      ++  
Sbjct: 53  LHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTT 112

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113
            + ++ M  G+FRH+PV ENG +  ++ I   +   I  +E  AE  KA  A 
Sbjct: 113 DQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHIKAYIAG 165

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  104 bits (262), Expect = 9e-28
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 126 SGPNTFIETLRERMFRPSLSTIIPE-----KSKVVTISPTDTVLMATKKMLELRLSSAVV 180
           S  +    + RE ++   ++T + +        VVT+ P  ++  A   +   ++ + VV
Sbjct: 4   SHHHHHHSSGRENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVV 63

Query: 181 T-VENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGK 239
           T  +    GI T +D++  V  Q   +    V   MT N      ++     + IM  G+
Sbjct: 64  TDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGR 123

Query: 240 FLHLPVVDRDGDVVDVVDVIHITHAAVA 267
           F H+PV + +G +  ++ +  +  A + 
Sbjct: 124 FRHVPVEE-NGRLAGIISIGDVVKARIG 150

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 45/172 (26%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALL---DIAKCLYDAIA 98
           +     R+   V  D    EA   +   K   + V + +G V+ +    D+ K +     
Sbjct: 29  LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAV----- 83

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
               A +   ++  +V                        M              VV   
Sbjct: 84  ----AGQGAASLQQSVSVA---------------------M-----------TKNVVRCQ 107

Query: 159 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
              T     + M   R     V    +  GI++  D++   I +       +
Sbjct: 108 HNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEHI 159

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  110 bits (277), Expect = 4e-30
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V +L++ + +  + G  T  DI  RVI   L  +  PV ++MTRN      +T  
Sbjct: 33  MMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IPVERIMTRNLITANVNTPL 91

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAE 105
            E L+KM + + +H+ + E G+++ +  ++  L  +  R+E A  
Sbjct: 92  GEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETAIS 136

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 99.6 bits (249), Expect = 4e-26
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
            K++ + P+ +V  A++ M+E  + S VV  ++    G  T  DI+ RVI   LP D   
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IP 73

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 270
           VE++MT N   A ++TP+ + L  M + +  H+ + + +G +V +  +  +  A+   + 
Sbjct: 74  VERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRLE 132

Query: 271 NTAGS 275
               +
Sbjct: 133 TAISA 137

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 47/173 (27%)

Query: 34  RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DI 89
           R ++++  P+   MT+    V   T   EA + M++     L V+ ++G V+      DI
Sbjct: 1   RVMDMK-APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI 59

Query: 90  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 149
            +          R    G      VE +                     M R        
Sbjct: 60  IR----------RVIVPGLPYDIPVERI---------------------MTRN------- 81

Query: 150 EKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 202
               ++T +    +    +KM E R+   ++  E K  GI T  D+L     +
Sbjct: 82  ----LITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRR 130

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
              ++  MT         T + +A  +M +     L V++ DG+VV
Sbjct: 6   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVV 51

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  105 bits (265), Expect = 1e-28
 Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 1/101 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA  + ALL+     L+ GILT++D + +    +  +++T V ++MTR   +V  +   
Sbjct: 35  MAADNIGALLVMKDEKLV-GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTN 93

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            + +  + + + RHLPV+++G+VI LL I   + DAI++ +
Sbjct: 94  EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQHQ 134

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  103 bits (260), Expect = 8e-28
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           VV I P D+V  A +KM    + + +V  + K  GILT +D   +    + P   T V++
Sbjct: 19  VVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKE 78

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267
           +MT       ++    D + ++ + +  HLPV+D DG V+ ++ +  +   A++
Sbjct: 79  IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 49.5 bits (119), Expect = 9e-08
 Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 47/169 (27%)

Query: 41  TPVSKVMTRNPTFVLS---DTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLY 94
             V  ++      V++   D     A+QKM       L V+++ +++ +L   D ++   
Sbjct: 6   KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSR--- 62

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
                  ++    K +                        ++E M R            V
Sbjct: 63  -------KSYLLDKPVKDT--------------------QVKEIMTRQ-----------V 84

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 203
             +   +T       + E+R+    V  + K  G+L+  D++   ISQ+
Sbjct: 85  AYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQH 133

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  106 bits (267), Expect = 4e-27
 Identities = 47/283 (16%), Positives = 93/283 (32%), Gaps = 65/283 (22%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARE---------LNLEETPVSKVMTRNP 51
           +    +  +++ +    + G+LT +D+ + V +            ++  TP+   MT NP
Sbjct: 46  INEGGIGRIIVANEK--IEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNP 103

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKG 107
             V + +    A+  MV   F  LPVV  N + + ++   +      D            
Sbjct: 104 VTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIF------- 156

Query: 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 167
                                      ++  M            +KV TI     +  A 
Sbjct: 157 --------------------------PVKVFM-----------STKVQTIYKEVRLDQAV 179

Query: 168 KKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPAD-----STLVEKVMTPNPEC 221
           K ML        V+  +NK  GI+T  + + ++       D       +V+ VM  N   
Sbjct: 180 KLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVT 239

Query: 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
                 +  A   M   +   L ++++D  +  ++    +  A
Sbjct: 240 IDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA 282

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  101 bits (254), Expect = 2e-25
 Identities = 42/265 (15%), Positives = 78/265 (29%), Gaps = 41/265 (15%)

Query: 25  KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEV- 83
             I        L  +   +  +M +NP  +  +     A +K+ +G    + V       
Sbjct: 4   DKIHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEG 63

Query: 84  -IALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRP 142
            +   D+   +           +        +                        M   
Sbjct: 64  LLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDY---------------------MTPN 102

Query: 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVIS 201
                       VT+  T     A   M+     S  VV + +KP GI+T ++ L+    
Sbjct: 103 -----------PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 151

Query: 202 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DV 258
            +   +   V+  M+   +    +  +  A+ +M    F  LPV+D D  VV +V   + 
Sbjct: 152 LD---EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA 208

Query: 259 IHITHAAVATVGNTAGSNNEAASTM 283
           I     AV  +             M
Sbjct: 209 IKQLAKAVDKLDPDYFYGKVVKDVM 233

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIA-----TRVIARELNLEETPVSKVMTRNPTFVL 55
           M  R    L + D +  + GI+T  +                     V  VM  N   + 
Sbjct: 182 MLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTID 241

Query: 56  SDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYD 95
                  A  +M+  +   L ++ ++  +  ++   D+   L+ 
Sbjct: 242 ELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH 285

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 190 LTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 249
           + S  I      +NL      +E +M  NP   + +  +  A   +++G    + V   +
Sbjct: 1   MGSDKIHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVA--N 58

Query: 250 GDVV------DVVDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMALSPNDDEED 302
             +       D++  +        + G+    +       M     + + +    DE  
Sbjct: 59  EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP---NPVTVYNTSDEFT 114

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  102 bits (257), Expect = 4e-27
 Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MA + + ALL+ D + +  GI+T++D A +V+ +E + + T V ++MT    +V      
Sbjct: 39  MAEKGIGALLVVDGDDI-AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQST 97

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKA 109
            E +  M + + RHLPV++ G++I L+ I   +   IA  +    + + 
Sbjct: 98  DECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIADQQFTISQLEH 146

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  101 bits (253), Expect = 1e-26
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKP 186
           GP +   T+ + +     S        + T++  D V  A K M E  + + +V   +  
Sbjct: 1   GPGSMSTTVAQILKAKPDSG-----RTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDI 55

Query: 187 RGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
            GI+T +D   +V+ Q   + +T VE++MT             + + +M + +  HLPV+
Sbjct: 56  AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVL 115

Query: 247 DRDGDVVDVVDVIHITHAAVA 267
           D  G ++ ++ +  +  + +A
Sbjct: 116 D-GGKLIGLISIGDLVKSVIA 135

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 23/185 (12%), Positives = 56/185 (30%), Gaps = 45/185 (24%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIAR 99
                 R    V  +    +A++ M +     L VV+  ++  ++   D A+        
Sbjct: 15  AKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYAR-------- 66

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
             +   + ++  A                      + E M              V  + P
Sbjct: 67  --KVVLQERSSKAT--------------------RVEEIMTAK-----------VRYVEP 93

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219
           + +       M E R+    V    K  G+++  D++ + +  +     + +E  +   P
Sbjct: 94  SQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLV-KSVIADQQFTISQLEHYIHGTP 152

Query: 220 ECATI 224
              ++
Sbjct: 153 SVTSV 157

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  104 bits (261), Expect = 2e-26
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 71/284 (25%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDIATRVIARE-------------LNLEETPVSKV 46
           M   +   L + ++ N  + GI+T  DI   +                 L     PV ++
Sbjct: 30  MNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREI 89

Query: 47  MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 102
           M  N   +  +    EA++  +       P+V +  ++I+L+   D+ + L D I   E 
Sbjct: 90  MEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV 149

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                           + + + R            V+  +P + 
Sbjct: 150 --------------------------------IDDYITRD-----------VIVATPGER 166

Query: 163 VLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ----------NLPADSTLVE 212
           +    + M+        V  E +  GI+TS D +  + S                +  +E
Sbjct: 167 LKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRME 226

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           ++M  +   A     +     IM       LPVVD +  +  ++
Sbjct: 227 EIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGII 270

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 97.9 bits (244), Expect = 5e-24
 Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 40/255 (15%)

Query: 42  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE-----VIALLDIAKCLYDA 96
            +     +    V   T   +AL  M + K+R LPVV  G      +I  +DI   +   
Sbjct: 5   VMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGG 64

Query: 97  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 156
                   +  +   AA+                  E +RE M              V+T
Sbjct: 65  SKYNLIREKHERNFLAAIN-----------------EPVREIMEEN-----------VIT 96

Query: 157 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
           +     +  A +  L   +  A +V  EN+   ++T +D++  ++ +    +   ++  +
Sbjct: 97  LKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV--IDDYI 154

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHAAVATVGNT 272
           T +   AT    + D    M    F  LPVV  +G +V ++   D I +  +  A     
Sbjct: 155 TRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGSDWAFNHMQ 213

Query: 273 AGSNNEAASTMMQKF 287
            G+  E  +  M++ 
Sbjct: 214 TGNVREITNVRMEEI 228

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 81.3 bits (201), Expect = 5e-18
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 38/205 (18%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
              + V    + +    L  ++T++D+   ++  +   E   +   +TR+          
Sbjct: 110 FLTKNVGGAPIVNDENQLISLITERDVIRALL--DKIDENEVIDDYITRDVIVATPGERL 167

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGV 117
            +  + MV+  FR LPVV  G ++ ++   D  K L    A         + I       
Sbjct: 168 KDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNV---- 223

Query: 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS 177
                            + E M R            V+T    D +    + M+   + +
Sbjct: 224 ----------------RMEEIMKRD-----------VITAKEGDKLKKIAEIMVTNDIGA 256

Query: 178 AVVTVEN-KPRGILTSKDILMRVIS 201
             V  EN + +GI+T KD+L +  +
Sbjct: 257 LPVVDENLRIKGIITEKDVL-KYFA 280

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 96.1 bits (240), Expect = 6e-25
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           ++V++++    +    K M E  + S +V   NKP GI+T +DI+ + I +    + T  
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSLE-TKA 69

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           E+ MT +      D+PI  AL +M      HLPVVD  G++  ++
Sbjct: 70  EEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGII 114

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 75.3 bits (186), Expect = 4e-17
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M  + + ++++ D N  + GI+T++DI  + I +  +LE T   + MT +   +  D+  
Sbjct: 30  MTEKNIGSVIVVDGNKPV-GIITERDIV-KAIGKGKSLE-TKAEEFMTASLITIREDSPI 86

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARME 101
             AL  M Q   RHLPVV + G +  ++   DI + + D    M 
Sbjct: 87  TGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETMG 131

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 58.0 bits (141), Expect = 6e-11
 Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 47/170 (27%)

Query: 38  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLY 94
           +EE  V + M      V  D    +  + M +     + VV+  + + ++   DI     
Sbjct: 1   MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV---- 56

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
                  +A  KGK++    E                       M              +
Sbjct: 57  -------KAIGKGKSLETKAEEF---------------------MTAS-----------L 77

Query: 155 VTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQN 203
           +TI     +  A   M +  +    VV  +   +GI++ +DI   +    
Sbjct: 78  ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMF 127

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           +  +V++ M       T D  + D   +M +     + VVD     V ++
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGII 50

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 97.1 bits (242), Expect = 1e-24
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           S   T++   TV  A K M E  L   VV  +N    G+L+ + I+ R I +N   D   
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 76

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           +  VM         D  + D    + +       VVD  G VV
Sbjct: 77  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVV 119

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 81.7 bits (202), Expect = 6e-19
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    +  L++ D N    G+L+++ I  R I R    +E P+  VM +    V SD   
Sbjct: 35  MNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDV 94

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAI-----A 111
            +    + +       VV + G V+ ++   D+++ L  A       + + K        
Sbjct: 95  KDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPK 154

Query: 112 AAVEGVEKHW 121
             V  +E  +
Sbjct: 155 CGVGVLEPVY 164

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 47/177 (26%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V K+M  N   V  +T   +A++ M +     L V  +NG  + LL    I K     I 
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRF---IP 67

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
           R ++  E                             +R  M           +  +  + 
Sbjct: 68  RNKKPDEV---------------------------PIRLVM-----------RKPIPKVK 89

Query: 159 PTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV 214
               V      + E  L    VV    +  GI+T  D+  R +S+    D  L  + 
Sbjct: 90  SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS-RYLSRASITDILLSHRT 145

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           VEK+M  N +    +T + DA+ IM++     L V D +G+ V ++
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLL 56

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 93.4 bits (233), Expect = 7e-24
 Identities = 18/106 (16%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           + V  +   +T+  A + M E  + +  +  ++ +  G+LT +DI+++ ++  L  ++  
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             ++   +      +  I + L++M + +   +PV+  +  +V +V
Sbjct: 76  AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIV 120

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 88.4 bits (220), Expect = 6e-22
 Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    + AL +   +  L G+LTD+DI  + +A  L+       ++   +  +V ++   
Sbjct: 34  MREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASI 93

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYD 95
            E L  M + + R +PV+    ++ ++   DIA+ L +
Sbjct: 94  QEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHLPE 131

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 52.2 bits (126), Expect = 8e-09
 Identities = 26/170 (15%), Positives = 46/170 (27%), Gaps = 46/170 (27%)

Query: 38  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 93
              T    +M    T V        A Q M +     LP+  ++  +  +L   DI    
Sbjct: 5   FTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI-- 62

Query: 94  YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153
                   +    G     A                    T  E                
Sbjct: 63  --------KGLAAGLDPNTA--------------------TAGELARDS----------- 83

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN 203
           +  +    ++      M E ++    V  E++  GI+T  DI  R + ++
Sbjct: 84  IYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA-RHLPEH 132

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 43.7 bits (104), Expect = 9e-06
 Identities = 9/52 (17%), Positives = 16/52 (30%)

Query: 205 PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           P   T    +M     C      +  A   M +     LP+   D  +  ++
Sbjct: 4   PFTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGML 55

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 89.1 bits (222), Expect = 2e-22
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           + V TI  T ++    +  +E    S+VV  E    GI+T+ D+L   I++        V
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKV 67

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            +VM  +    +    I +A   M       L V + D +++ V+
Sbjct: 68  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVI 111

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
                  + ++      + GI+T  D+    IA   +L E  V +VM R+   +      
Sbjct: 27  YVENAKGSSVVVKEGVRV-GIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTISPRATI 84

Query: 61  VEALQKMVQGKFRHLPVVENGEVI 84
            EA +KMV+     L V E+ E+I
Sbjct: 85  KEAAEKMVKNVVWRLLVEEDDEII 108

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 57.1 bits (139), Expect = 1e-10
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 45/163 (27%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIAR 99
           V  VM  +   +       + L+  V+       VV+ G  + ++   D+ + +      
Sbjct: 3   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAI------ 56

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
               AE        V  V                     M R            +VTISP
Sbjct: 57  ----AEGDDLAEVKVWEV---------------------MERD-----------LVTISP 80

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 202
             T+  A +KM++  +   +V  +++  G++++ DIL   +++
Sbjct: 81  RATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMAK 123

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
            VE VM  + +   I   + D L    +       VV  +G  V
Sbjct: 2   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRV 44

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 85.4 bits (212), Expect = 1e-20
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN---KPRGILTSKDILMRVISQNLPAD 207
           K   V++  T T+     ++ + R+  AV+T  +   +P  +++ +DIL R ++Q L  D
Sbjct: 12  KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDLD 70

Query: 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                 +   +P       P+  A   M      H+ VV+++G++V V+
Sbjct: 71  -GPAMPIAN-SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVL 117

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 71.9 bits (177), Expect = 9e-16
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 9/111 (8%)

Query: 1   MAARRVDALLLT--DSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDT 58
           +A  RV   +LT  D+      +++++DI  R +A+ L+L+  P   +   +P  VL   
Sbjct: 31  LAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDLD-GPAMPIAN-SPITVLDTD 87

Query: 59  LAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAE 105
               A +KM +   RH+ VV +NGE++ +L   D+       +        
Sbjct: 88  PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLELATAEVP 138

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 19/163 (11%), Positives = 46/163 (28%), Gaps = 51/163 (31%)

Query: 41  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL------DIAKCLY 94
              S+++ R P  +       E   ++ + +     +         +      DI + + 
Sbjct: 5   IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV- 63

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
                      +   +      +                                  +  
Sbjct: 64  ----------AQRLDLDGPAMPI---------------------A------------NSP 80

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
           +T+  TD V +A +KM    +   VV  +N +  G+L+ +D+ 
Sbjct: 81  ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 84.7 bits (210), Expect = 3e-20
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           S  V I    +V  A   M    + +  V   +    G+L+ KD+L   I Q     S  
Sbjct: 24  SIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQEL-TSVP 82

Query: 211 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 262
           V  +MT  P       +  ++D    + + +   LPV+       +V+  +  T
Sbjct: 83  VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKT 136

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP--TFVLSDT 58
           M    V  L + D +A+L G+L+ KD+    I ++  L   PV  +MTR P  T    + 
Sbjct: 42  MFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ-ELTSVPVHIIMTRMPNITVCRRED 100

Query: 59  LAVEALQKMVQGKFRHLPVVENGEVIALL-------DIAKCLYD 95
             ++  + +++ +   LPV+++ +    +       ++ K L  
Sbjct: 101 YVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 26/189 (13%), Positives = 63/189 (33%), Gaps = 52/189 (27%)

Query: 22  LTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-EN 80
           +T K   T+++A +L  ++  V    +  P  +  +    +A+  M       L VV  +
Sbjct: 1   MTGKTG-TQLLADKL--KKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRD 56

Query: 81  GEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRE 137
             ++ +L   D+ +           +  + +  +  V  +                    
Sbjct: 57  AVLVGVLSRKDLLR----------ASIGQQELTSVPVHII-------------------- 86

Query: 138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPR---GILTSK 193
            M R            +      D V+   K ++E ++ +  V+   +K     G +T  
Sbjct: 87  -MTR---------MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKT 136

Query: 194 DILMRVISQ 202
           ++   ++S 
Sbjct: 137 NMTKILVSL 145

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 84.0 bits (208), Expect = 4e-20
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPR 187
           N  I   ++   +  +  ++    KV  +   + +  A   +++   S+  V+    K  
Sbjct: 2   NAMISIPKDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLH 61

Query: 188 GILTSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 243
           G++++  IL  ++          +   VE+VM  +     ++     AL +  D  F  +
Sbjct: 62  GLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--I 119

Query: 244 PVVDRDGDVV 253
             V+ DG   
Sbjct: 120 CAVNEDGYFE 129

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL----NLEETPVSKVMTRNPTFVLS 56
           +      A+ + D    L G+++   I   ++  E      LEE  V +VM ++   +  
Sbjct: 43  LVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKL 102

Query: 57  DTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 102
           +    +AL+  +   F  +  V E+G    +L    I K L   + +  R
Sbjct: 103 EDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQHNR 150

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 44/165 (26%)

Query: 38  LEETPVSKVMTRNP--TFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAK 91
            ++  V  +M  +     V        AL  +V+  +  +PV++       +I+   I  
Sbjct: 12  FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILD 71

Query: 92  CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK 151
            +           E+                            + + M           K
Sbjct: 72  GILGLERIEFERLEE--------------------------MKVEQVM-----------K 94

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
             +  +   D+   A +  ++       V  +    GILT + IL
Sbjct: 95  QDIPVLKLEDSFAKALEMTIDHPFI-CAVNEDGYFEGILTRRAIL 138

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 83.3 bits (206), Expect = 8e-20
 Identities = 19/127 (14%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGIL 190
           +        + ++   +    KV  + P + +  A   + +   S+  V+    K  G++
Sbjct: 1   MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI 60

Query: 191 TSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
           +   ++  ++          ++  VE+VM  N     +D  ++ A+ ++ +  F  + V 
Sbjct: 61  SMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVE 118

Query: 247 DRDGDVV 253
           + DG   
Sbjct: 119 NDDGYFA 125

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL----NLEETPVSKVMTRNPTFVLS 56
           +      A+ + D++  L G+++   +   ++  E      LE   V +VM RN   +  
Sbjct: 39  LTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRL 98

Query: 57  DTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGK 108
           D   ++A+  +V   F  + V  ++G    +    ++ K L   + R     + G+
Sbjct: 99  DDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLHRPNGGRKLGR 152

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 23/191 (12%), Positives = 50/191 (26%), Gaps = 47/191 (24%)

Query: 32  IARELN-LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VI 84
           +  E N   +  V   +        V        AL  + +  +  +PV++       +I
Sbjct: 1   MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI 60

Query: 85  ALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSL 144
           ++  +   +           E  K                            E M     
Sbjct: 61  SMTMMMDAILGLERIEFERLETMKV--------------------------EEVM----- 89

Query: 145 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ-- 202
                    +  +   D+++ A   ++       V   +    GI T +++L ++  Q  
Sbjct: 90  ------NRNIPRLRLDDSLMKAVGLIVNHPFV-CVENDDGYFAGIFTRREVLKQLNKQLH 142

Query: 203 NLPADSTLVEK 213
                  L  K
Sbjct: 143 RPNGGRKLGRK 153

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 86.9 bits (215), Expect = 9e-20
 Identities = 37/289 (12%), Positives = 84/289 (29%), Gaps = 63/289 (21%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDI--------------ATRVIARELNLEETPVSK 45
           +    V A  L DS      G+LT  D                  +   ++        +
Sbjct: 63  LVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQ 122

Query: 46  VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE-----VIALLDIAKCLYDAIARM 100
              +    +  +    +A+  +++ K   LPV++        ++    I K L   I   
Sbjct: 123 DSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEF 182

Query: 101 ERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPT 160
            +     K++                      E L+   +             +  +  T
Sbjct: 183 PKPEFMSKSL----------------------EELQIGTYAN-----------IAMVRTT 209

Query: 161 DTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLP------ADSTLVEK 213
             V +A    ++ R+S+  VV  + +   I +  D++     +           +     
Sbjct: 210 TPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRS 269

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
                     +   +   ++ + + +   L VVD    V  +V   D++
Sbjct: 270 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 70.4 bits (172), Expect = 5e-14
 Identities = 43/225 (19%), Positives = 75/225 (33%), Gaps = 36/225 (16%)

Query: 53  FVLSDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAI 110
              +     +A   +V    R  P+   +    + +L I     D I  +       K+ 
Sbjct: 49  VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT----DFINIL---HRYYKSA 101

Query: 111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKM 170
              +  +E+H         T+ E   +  F+P           +V ISP  ++  A   +
Sbjct: 102 LVQIYELEEHK------IETWREVYLQDSFKP-----------LVCISPNASLFDAVSSL 144

Query: 171 LELRLSSAVV--TVENKPRGILTSKDILMRV--------ISQNLPADSTLVEKVMTPNPE 220
           +  ++    V          ILT K IL  +          + +      ++     N  
Sbjct: 145 IRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIA 204

Query: 221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265
                TP+  AL I    +   LPVVD  G VVD+     + + A
Sbjct: 205 MVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLA 249

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 66.9 bits (163), Expect = 7e-13
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENK 185
           P +        M       +IP  SK+V    +  V  A   ++   + +A +  + +  
Sbjct: 21  PESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS 80

Query: 186 PRGILTSKDILMR--------------VISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231
             G+LT  D +                +    +     +  +       C + +  + DA
Sbjct: 81  FVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDA 140

Query: 232 LHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITHA 264
           +  +   K   LPV+D + G+ + ++    I   
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 174

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 55.7 bits (134), Expect = 4e-09
 Identities = 35/221 (15%), Positives = 63/221 (28%), Gaps = 49/221 (22%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDIATRVIARELNLEETP--------VSKVMTRNP 51
           +   ++  L + D  +     ILT K I   +        +          +      N 
Sbjct: 144 LIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANI 203

Query: 52  TFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKG 107
             V + T    AL   VQ +   LPVV E G V+ +    D+     +            
Sbjct: 204 AMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN------- 256

Query: 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMAT 167
                            +    T     R   F             V+     +T+    
Sbjct: 257 -----------------LDVSVTKALQHRSHYFEG-----------VLKCYLHETLEAII 288

Query: 168 KKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPAD 207
            +++E  +    VV   +  +GI++  DIL  ++       
Sbjct: 289 NRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTGGEKK 329

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 81.1 bits (201), Expect = 3e-19
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             V+T    + V+ A +KML+ ++SS  V+  ENK  GI+T+ DI   +I      ++T 
Sbjct: 16  KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETT- 74

Query: 211 VEKVMTPNPECATIDTPIVDALHIM-----HDGKFLHLPVVDRDGDVV 253
           +  VMT +      D  I++A+  M      +     LPVVD++  +V
Sbjct: 75  IGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLV 122

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 60.7 bits (148), Expect = 8e-12
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M   ++ +L + D    + GI+T  DI   +I  +  LE T +  VMT++   +  D   
Sbjct: 34  MLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLE-TTIGDVMTKDVITIHEDASI 92

Query: 61  VEALQKMVQG-----KFRHLPVV-ENGEVIALL---DIAKCLYDAI 97
           +EA++KM            LPVV +N +++ ++   DI + +   I
Sbjct: 93  LEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKII 138

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 52.6 bits (127), Expect = 7e-09
 Identities = 40/176 (22%), Positives = 59/176 (33%), Gaps = 53/176 (30%)

Query: 37  NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKC 92
            L+   V  VMT+N          VEA +KM++ K   LPV+ +  +VI ++   DI   
Sbjct: 4   TLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY- 62

Query: 93  LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS 152
                            +   +  V                     M             
Sbjct: 63  ---------NLIRDKYTLETTIGDV---------------------M-----------TK 81

Query: 153 KVVTISPTDTVLMATKKMLELRLSSA------VVTVENKPRGILTSKDILMRVISQ 202
            V+TI    ++L A KKM              VV   NK  GI++  DI+ R IS+
Sbjct: 82  DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII-RTISK 136

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            +  V+ VMT N   A     +V+A   M   K   LPV+D +  V+ +V
Sbjct: 6   KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIV 55

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 81.7 bits (202), Expect = 4e-19
 Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGIL 190
           I    +++   ++   + E  KV  +   + +  A   + +   ++  V+    +  G++
Sbjct: 4   ISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63

Query: 191 TSKDILMRVISQNL----PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
            +  I+  +           D   VE+VM  +     I+ PI+    ++ +  F  + V 
Sbjct: 64  GTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVE 121

Query: 247 DRDGDVVDVV 256
           + +     + 
Sbjct: 122 NDEQVFEGIF 131

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL----NLEETPVSKVMTRNPTFVLS 56
           +      A+ + D +  L G++    I   +   E      L++  V +VM  +   +  
Sbjct: 42  LTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHI 101

Query: 57  DTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMER 102
           +   ++    ++   F  + V  +      +     + K L   I  + +
Sbjct: 102 NDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRSLNK 149

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 211 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           V + M    + A +     +  AL ++    +  +PV+D    +  ++    I ++
Sbjct: 16  VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNS 71

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 23/176 (13%), Positives = 49/176 (27%), Gaps = 47/176 (26%)

Query: 32  IARELN-LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VI 84
           I+ + + L E  V + M        V        AL  + +  +  +PV++       +I
Sbjct: 4   ISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63

Query: 85  ALLDIAKCLYDA-IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPS 143
               I   ++       E+  +                            T+ E M    
Sbjct: 64  GTNMIMNSIFGLERIEFEKLDQI---------------------------TVEEVM---- 92

Query: 144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV 199
                   + +  +   D ++     ++       V   E    GI T + +L  +
Sbjct: 93  -------LTDIPRLHINDPIMKGFGMVINNGFV-CVENDEQVFEGIFTRRVVLKEL 140

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 76.4 bits (189), Expect = 1e-17
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
              +T     +++ A K +++  ++   +V    K  GI+TS DI   +           
Sbjct: 9   KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKT----- 63

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           +E++MT N   A  D P+      M       +PVVD    VV
Sbjct: 64  IEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVV 106

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           +    ++ L + D +  L GI+T  DIA     + L   +  + ++MTRN      D   
Sbjct: 27  LIKHNINHLPIVDEHGKLVGIITSWDIA-----KALAQNKKTIEEIMTRNVITAHEDEPV 81

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYD 95
                KM +     +PVV +   V+ ++   DI++    
Sbjct: 82  DHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 52.1 bits (126), Expect = 8e-09
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 52/168 (30%)

Query: 41  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDA 96
           T V  ++++ P    S+   +EA + +++    HLP+V E+G+++ ++   DIAK    A
Sbjct: 1   TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAK----A 56

Query: 97  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 156
           +A+ ++                               T+ E M              V+T
Sbjct: 57  LAQNKK-------------------------------TIEEIM-----------TRNVIT 74

Query: 157 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQN 203
               + V     KM +  +S   VV    +  GI+TS+DI  R+    
Sbjct: 75  AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS-RLFGGK 121

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 49.8 bits (120), Expect = 4e-08
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           TLV+ +++  P  A  +  I++A  I+      HLP+VD  G +V
Sbjct: 1   TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLV 45

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 77.9 bits (192), Expect = 8e-17
 Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 82/287 (28%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
               +V +  + +    L GI++ K I        +N +E  ++ ++ R+   V  +   
Sbjct: 27  FKKYKVRSFPVVNKEGKLVGIISVKRIL-------VNPDEEQLAMLVKRDVPVVKENDTL 79

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAAVEG 116
            +A + M++  +R + VV   G+ + +L   DI +  +    + +    + +        
Sbjct: 80  KKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYK--GVEIEPYYQRY-- 135

Query: 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS 176
                                                V  +     +  A K +L     
Sbjct: 136 -------------------------------------VSIVWEGTPLKAALKALLLSNSM 158

Query: 177 SAVV-TVENKPRGILTSKDIL-----------------------------MRVISQNLPA 206
           +  V   E    GI+   D+L                             +      L  
Sbjct: 159 ALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQL 218

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
            +  V ++MT +   AT    + +    M       LPV+  +GD++
Sbjct: 219 PNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLI 265

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 75.2 bits (185), Expect = 6e-16
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
            VTI+   T   A +   + ++ S  VV  E K  GI++ K IL       +  D   + 
Sbjct: 11  PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL-------VNPDEEQLA 63

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
            ++  +      +  +  A  +M +  +  + VVD  G  V
Sbjct: 64  MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPV 104

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 72.5 bits (178), Expect = 7e-15
 Identities = 51/248 (20%), Positives = 84/248 (33%), Gaps = 56/248 (22%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V  +MT+NP  +        AL+   + K R  PVV + G+++ ++    I     +   
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDE--- 59

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
                                             E L   + R            V  + 
Sbjct: 60  ----------------------------------EQLAMLVKRD-----------VPVVK 74

Query: 159 PTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 217
             DT+  A K MLE       VV  + KP GILT  DI+ R  +++       +E     
Sbjct: 75  ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQR 134

Query: 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD---VVDVVDVIHITHAAVATVGNTAG 274
                   TP+  AL  +     + LPVVD +G+   +VD  D++  +            
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELA 194

Query: 275 SNNEAAST 282
           +++E    
Sbjct: 195 ASSEEEWI 202

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 70.2 bits (172), Expect = 4e-14
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 17/201 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M       +++ DS     GILT  DI  R  A+    +   +     R  + V   T  
Sbjct: 86  MLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPL 145

Query: 61  VEALQKMVQGKFRHLPVV-ENGE---VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116
             AL+ ++      LPVV   G    ++   D+ +                      +E 
Sbjct: 146 KAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILES 205

Query: 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS 176
                           + + E M              V+  +P  TV     KM +  + 
Sbjct: 206 HPTLLFEKFELQLP-NKPVAEIM-----------TRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 177 SA-VVTVENKPRGILTSKDIL 196
              V+  E    G++   D+L
Sbjct: 254 QLPVIRGEGDLIGLIRDFDLL 274

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 74.1 bits (183), Expect = 1e-16
 Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTL 210
             + +   T  V+   + + + R+SS  ++        +  + D+L  +        S  
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 78

Query: 211 VEKVMT------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVI 259
           V + +             T +  +   +  +   +     VVD  G +V V+   D++
Sbjct: 79  VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 10/103 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTF------V 54
           +   RV ++ + D N  L  +    D+   +     N     V + + R           
Sbjct: 37  LTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTC 96

Query: 55  LSDTLAVEALQKMVQGKFRHLPVV-ENGE---VIALLDIAKCL 93
             +      +  + + +     VV + G    V+ L DI K +
Sbjct: 97  TKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 139

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 41/174 (23%)

Query: 34  RELNLEETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDI 89
           RE +  + P+  +      N       T  ++ +Q + QG+   +P++ ENG +I +   
Sbjct: 1   RETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVY-- 58

Query: 90  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 149
               YD +  ++                           N    ++ E +          
Sbjct: 59  --EAYDVLGLIKGGIY-----------------------NDLSLSVGEAL-----MRRSD 88

Query: 150 EKSKVVTISPTDTVLMATKKMLEL---RLSSAVVTVENKPRGILTSKDILMRVI 200
           +   V T +  D +      + +    R    VV    +  G+LT  DIL  ++
Sbjct: 89  DFEGVYTCTKNDKLSTIMDNIRKARVHRF--FVVDDVGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHI 261
           +  +   N +   + TP++D + ++  G+   +P++D +G +++V    DV+ +
Sbjct: 13  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL-------MRVISQN 203
               T+  T T+  A   M  L +    +V    K  GI++ +D+L        R    +
Sbjct: 13  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 72

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
             A  T + +VM  +         + ++   M   K   LPVV     +V
Sbjct: 73  SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLV 121

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 64.6 bits (158), Expect = 6e-13
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDI-------ATRVIARELNLEETPVSKVMTRNPTF 53
           M A  +  + + D+N  L GI++ +D+         R    +    ETP+ +VM  + T 
Sbjct: 31  MEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDVTS 90

Query: 54  VLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARMERAA 104
           V       E+   M + K   LPVV    ++ ++   D      + +   E + 
Sbjct: 91  VAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQEESE 144

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 38/180 (21%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V  +MTR+P  +L      +A   M     RH+P+V  N +++ ++   D+      ++ 
Sbjct: 7   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 66

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
           R  +                                L E M            + V +++
Sbjct: 67  RSAQGDSLAFET-----------------------PLFEVM-----------HTDVTSVA 92

Query: 159 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218
           P   +  +   M + ++    V  ++   GI+T  D +   I+     + +  +++    
Sbjct: 93  PQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQEESEPDELDEEQ 152

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            VE +MT +P        + DA H+M      H+P+VD +  ++ +V
Sbjct: 6   KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIV 52

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 30/140 (21%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP---- 205
           +  +  + P+ +V  A + ++E +++   V+       G+++  D+L             
Sbjct: 13  RQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDT 72

Query: 206 ----------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHL 243
                                     +V  +MTP+P      T + DA  ++ + KF  L
Sbjct: 73  NLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRL 132

Query: 244 PVVDRDGDVVDVV---DVIH 260
           PVVD DG ++ ++   +V+ 
Sbjct: 133 PVVDADGKLIGILTRGNVVR 152

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 20/182 (10%)

Query: 43  VSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIAR 99
           V   MT  +N   V   T   +AL+ +V+ K   LPV+ +N  ++ ++      YD +A 
Sbjct: 6   VGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVV----SDYDLLAL 61

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPE--KSKVVTI 157
              +                                 +++   +   ++ +      + +
Sbjct: 62  DSISGRSQND----------TNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVV 111

Query: 158 SPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216
             +  +  A + +LE +     VV  + K  GILT  +++   +     ADS        
Sbjct: 112 RDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNADSISGRSQND 171

Query: 217 PN 218
            N
Sbjct: 172 TN 173

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 34/135 (25%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELN----------------------- 37
           +  ++V  L + D N  L G+++D D+         +                       
Sbjct: 32  LVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKL 91

Query: 38  ---LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIA 90
                   V  +MT +P  V   T   +A + +++ KFR LPVV  +G++I +L   ++ 
Sbjct: 92  ISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVV 151

Query: 91  KCLYDAIARMERAAE 105
           +    A  +++R A+
Sbjct: 152 R----AALQIKRNAD 162

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 73.1 bits (180), Expect = 5e-16
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 16/117 (13%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP----- 205
            K   +     +     ++LE  ++    V  +NK  G++    +L              
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 83

Query: 206 ---------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
                      +    ++M  +P    +DTP+ +AL +M D     +PVVD  G++V
Sbjct: 84  ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIV 139

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 38  LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDA 96
           ++   V K+++  PT V  DT   E + ++++        V  + +++ ++ +   L  +
Sbjct: 13  MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72

Query: 97  IARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVT 156
                    K + I ++++ +                   E M               V 
Sbjct: 73  GFHFFGFIPKEELIRSSMKRLIAK-------------NASEIM------------LDPVY 107

Query: 157 ISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
           +     +  A K M++  +    VV  + +  G L S +IL
Sbjct: 108 VHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 19/112 (16%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIAREL--------------NLEETPVSKV 46
           +    V   +    +  L G++    +                        L     S++
Sbjct: 42  ILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEI 101

Query: 47  MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLY 94
           M      V  DT   EAL+ M+    + +PVV E GE++  L   +I   L+
Sbjct: 102 MLDPVY-VHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW 152

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           V K+++  P     DTPI + +  + +        V RD  +V ++
Sbjct: 18  VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMI 63

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
               +  + TV     +M + + +   V   E   RG++  +D+L            + V
Sbjct: 22  DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-------DLDSSV 74

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
              ++        +  I  AL +  + +  +LPVVD +  + 
Sbjct: 75  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLK 116

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M   + +  ++ D      G++  +D+            ++ V   ++    FV  +   
Sbjct: 39  MRQYQTNECIVKDREGHFRGVVNKEDLLDL-------DLDSSVFNKVSLPDFFVHEEDNI 91

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
             AL   ++ +  +LPVV E   +   +   D  + L +A+A
Sbjct: 92  THALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALA 133

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 23/166 (13%), Positives = 43/166 (25%), Gaps = 53/166 (31%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIA 98
           V K +T++   V       E L +M Q +     V    G    ++   D+     D   
Sbjct: 15  VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLD--- 71

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
                                              ++  ++                 + 
Sbjct: 72  ----------------------------------SSVFNKV-----------SLPDFFVH 86

Query: 159 PTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQN 203
             D +  A    LE +     VV  E + +G ++  D L  +I   
Sbjct: 87  EEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 132

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
            V+K +T +         + + LH M   +     V DR+G    VV
Sbjct: 14  KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVV 60

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 73.8 bits (181), Expect = 4e-15
 Identities = 34/279 (12%), Positives = 78/279 (27%), Gaps = 50/279 (17%)

Query: 1   MAARRVDALLLTDS-NALLCGILTDKDIATRV---------------IARELNLEETPVS 44
           +    + +  L DS  +   G+LT  D    +               +  +   +     
Sbjct: 58  LLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERAL 117

Query: 45  KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAA 104
            V   +   +       EA  KM++ +   +P+++  E      +   L         A 
Sbjct: 118 GVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVAL 177

Query: 105 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVL 164
              +                              +  P     I  +  + +   T  V+
Sbjct: 178 NCRE---------------------------THFLKIPIGDLNIITQDNMKSCQMTTPVI 210

Query: 165 MATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT------P 217
              + + + R+SS  ++        +  + D+L  +        S  V + +        
Sbjct: 211 DVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFE 270

Query: 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                T +  +   +  +   +     VVD  G +V V+
Sbjct: 271 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVL 309

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 63.8 bits (155), Expect = 8e-12
 Identities = 36/225 (16%), Positives = 76/225 (33%), Gaps = 39/225 (17%)

Query: 56  SDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113
           +  L  ++L  ++Q      P+   +      LL       D I  +             
Sbjct: 47  TSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTT----DFINVI------------- 89

Query: 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 173
                  +  S       ++ L+    +     +  ++    +I P+  +  A  KMLE 
Sbjct: 90  ------QYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLES 143

Query: 174 RLSSAVV------TVENKPRGILTSKDILMRVIS-----QNLPADSTLVEKVMTPNPECA 222
           R     +      T       +LT   IL  V         L      +  +   N +  
Sbjct: 144 RSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSC 203

Query: 223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHITHA 264
            + TP++D + ++  G+   +P++D +G +++V    DV+ +   
Sbjct: 204 QMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 248

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 70.2 bits (173), Expect = 5e-15
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 8   ALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKM 67
              + D +  + GI TD D+  RV    +++ +  ++ VMTR    +   TLAV+AL  M
Sbjct: 63  MTAICDDDMNIIGIFTDGDLR-RVFDTGVDMRDASIADVMTRGGIRIRPGTLAVDALNLM 121

Query: 68  VQGKFRHLPVVENGEVIALLDI 89
                  + V +   ++ ++ +
Sbjct: 122 QSRHITCVLVADGDHLLGVVHM 143

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 157 ISPTDTVLMATKKMLELRL-SSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215
           +    T+  A  ++    L  +A+   +    GI T  D L RV    +      +  VM
Sbjct: 43  VGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGD-LRRVFDTGVDMRDASIADVM 101

Query: 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 261
           T         T  VDAL++M       + V D D     ++ V+H+
Sbjct: 102 TRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDH----LLGVVHM 143

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           ++     +   +   A +++     + A V    +  G++    +L     +  P     
Sbjct: 12  ETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLE--GRKGWPTVKEK 69

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
           + + +            + D L  +   K   +P+ D DG    VV
Sbjct: 70  LGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVV 115

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 4/85 (4%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           +AA       + D    L G++    +      +     +  + + +             
Sbjct: 31  LAASGCACAPVLDGERYL-GMVHLSRLLE--GRKGWPTVKEKLGEELLETVRSYRPGEQL 87

Query: 61  VEALQKMVQGKFRHLPVV-ENGEVI 84
            + L  +   K   +P+  E+G   
Sbjct: 88  FDNLISVAAAKCSVVPLADEDGRYE 112

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 14/155 (9%), Positives = 41/155 (26%), Gaps = 41/155 (26%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
            S +   +           +A +++        PV++    + ++ ++      +   + 
Sbjct: 7   FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLS----RLLEGRKG 62

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                         E L E +              V +  P + 
Sbjct: 63  WPTVK-------------------------EKLGEELLE-----------TVRSYRPGEQ 86

Query: 163 VLMATKKMLELRLSS-AVVTVENKPRGILTSKDIL 196
           +      +   + S   +   + +  G+++ K IL
Sbjct: 87  LFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRIL 121

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 64.5 bits (157), Expect = 6e-12
 Identities = 30/258 (11%), Positives = 76/258 (29%), Gaps = 38/258 (14%)

Query: 6   VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQ 65
           V+ +     ++     + + D    +  RE+  +       +     +V      ++A  
Sbjct: 78  VNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIG----AIPPETIYVHPMHSLMDACL 133

Query: 66  KMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125
            M + + R +P+++                     E  +E   ++      + K    + 
Sbjct: 134 AMSKSRARRIPLIDV------------------DGETGSEMIVSVLT-QYRILKFISMNC 174

Query: 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVEN 184
                    L     + ++ T       + T S    V    K + E  +S+  +V  E 
Sbjct: 175 KETAMLRVPLN----QMTIGTWSN----LATASMETKVYDVIKMLAEKNISAVPIVNSEG 226

Query: 185 KPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE------CATIDTPIVDALHIMHDG 238
               +  S D++  +   +       V + +   P              +      +   
Sbjct: 227 TLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHS 286

Query: 239 KFLHLPVVDRDGDVVDVV 256
           +   L VVD +  +  ++
Sbjct: 287 RVHRLFVVDENLKLEGIL 304

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 38/224 (16%)

Query: 56  SDTLAVEALQKMVQGKFRHLPVV--ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113
                  +L  +        P+   E  +   LL +A    D +  ++   +      A 
Sbjct: 39  VTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMA----DFVNVIKYYYQSSSFPEAI 94

Query: 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 173
            E                I+  R    R     I     + + + P  +++ A   M + 
Sbjct: 95  AE----------------IDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS 138

Query: 174 R------LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV------MTPNPEC 221
           R      +     T       +LT   IL + IS N    + L   +         N   
Sbjct: 139 RARRIPLIDVDGETGSEMIVSVLTQYRIL-KFISMNCKETAMLRVPLNQMTIGTWSNLAT 197

Query: 222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV---DVIHIT 262
           A+++T + D + ++ +     +P+V+ +G +++V    DV+H+ 
Sbjct: 198 ASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLI 241

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 20/140 (14%)

Query: 147 IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVV--TVENKPRGILTSKDILMRVI---- 200
           ++P   +++    T  V  +   +    + SA +  +  NK  G+LT  D +  +     
Sbjct: 27  VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQ 86

Query: 201 SQNLPADSTLVEK--------------VMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
           S + P     ++K               + P          ++DA   M   +   +P++
Sbjct: 87  SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI 146

Query: 247 DRDGDVVDVVDVIHITHAAV 266
           D DG+    + V  +T   +
Sbjct: 147 DVDGETGSEMIVSVLTQYRI 166

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFV------ 54
           +A + + A+ + +S   L  +    D+   +   + +  +  V + + + P         
Sbjct: 211 LAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTC 270

Query: 55  -LSDTLAVEALQKMVQGKFRHLPVV-ENGE---VIALLDIAKCLYDAIARMERAAEKGKA 109
             +D L       +   +   L VV EN +   +++L DI   +           E+   
Sbjct: 271 RATDRLD-GIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPEQTDN 329

Query: 110 IAAAV 114
             +AV
Sbjct: 330 FESAV 334

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 52/217 (23%)

Query: 6   VDALLLTDSNALLCGILTDKDIATRVIARELNLEETP--VSKV------MTRNPTFVLSD 57
           +D    T S  ++  +LT   I   +    +N +ET      +         N      +
Sbjct: 146 IDVDGETGSEMIV-SVLTQYRI---LKFISMNCKETAMLRVPLNQMTIGTWSNLATASME 201

Query: 58  TLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAIAAA 113
           T   + ++ + +     +P+V   G ++ +    D+   + D                  
Sbjct: 202 TKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD------------------ 243

Query: 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL 173
                          +    ++ E + +            V T   TD +      +   
Sbjct: 244 ------------GDYSNLDLSVGEALLKRP-----ANFDGVHTCRATDRLDGIFDAIKHS 286

Query: 174 RLSSA-VVTVENKPRGILTSKDILMRVISQNLPADST 209
           R+    VV    K  GIL+  DIL  +I         
Sbjct: 287 RVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGV 323

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 61.6 bits (149), Expect = 9e-12
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 29/185 (15%)

Query: 30  RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDI 89
           R++ R +      V   M  + T +  DT   E ++ +        P+VE+ E   L+ I
Sbjct: 2   RILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGI 61

Query: 90  AKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIP 149
            +                                ++           ++  +  L+   P
Sbjct: 62  VQ--------------------------RAQLVQALQAEPPSRAPGHQQCLQDILARGCP 95

Query: 150 EKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ--NLPAD 207
            +   +T+    T+  A      L L S  VT   +  G ++  ++  + IS   N PA 
Sbjct: 96  TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMK-KAISNLTNPPAP 154

Query: 208 STLVE 212
              +E
Sbjct: 155 KEFLE 159

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 198 RVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--DGDVVDV 255
           R++ +N+ +    VE  M  +      DTP+ + + ++        P+V+      +V +
Sbjct: 2   RILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGI 61

Query: 256 VDVIHITHAAVATVGNTAGSNNEAASTMMQKFWDSAMA 293
           V    +  A  A   + A  + +    ++ +   +   
Sbjct: 62  VQRAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPV 99

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 12/110 (10%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVV---TVENKPRGILTSKDIL---------MRV 199
             + T++    +    K +    ++   +   T      GI+    ++            
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 200 ISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD 249
             Q    D         P       +T +  A ++        L V  R 
Sbjct: 81  GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG 130

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 59.5 bits (143), Expect = 1e-10
 Identities = 25/225 (11%), Positives = 60/225 (26%), Gaps = 11/225 (4%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGE----VIALLDIAKCLYDAIA 98
           V  +       +  +     A   M     + +PV +       +++  +I     D   
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 99  RMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158
               A               +    +        + +   M   SL   I E    +   
Sbjct: 69  SNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD 128

Query: 159 PTDTVLMATKK-------MLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             +      +              S  ++ +  K    + +        S+ +     + 
Sbjct: 129 RAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVD 188

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             +   N    + D  + D    M + ++ + PV+D +  VV  +
Sbjct: 189 YVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSI 233

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 11/97 (11%), Positives = 32/97 (32%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 270
           VE +          +  +  A +IM D     +PV D +  ++ ++   +IT   +    
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 271 NTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRRFY 307
           +   + +  +   +     +       + +    +  
Sbjct: 69  SNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVV 105

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKV 214
           +TI+P +TV  A   M +  +    V  + K  GI+T KD  +         +  LV+++
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKD--IAAR------EGKLVKEL 155

Query: 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
           MT           + +AL IM + +   LPVVD  G
Sbjct: 156 MTKEVITVPESIEVEEALKIMIENRIDRLPVVDERG 191

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 210
             + P  T             ++  VT +  P     G++T +D    +         T 
Sbjct: 108 SNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRD--YPIDLTQT---ETK 162

Query: 211 VEKVMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 250
           V  +MTP  +  T   DT + +A  I+ + K   LP++D D 
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ 204

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 155 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           VT+ P  T+    +       +   VVT  N+  GI+T +D  +R ++      +  V  
Sbjct: 100 VTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRD--VRFVTD----LTKSVAA 153

Query: 214 VMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 250
           VMTP    AT+       +    MH  +   + VV+ + 
Sbjct: 154 VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEF 192

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 52.1 bits (126), Expect = 8e-08
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 155 VTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
           +T++P  TV  A   M E ++    VV  E +  G+LT++D  +R         S  ++ 
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRD--VRFEKN----LSKKIKD 159

Query: 214 VMTPNPECATI--DTPIVDALHIMHDGKFLHLPVVDRDG 250
           +MTP  +      D  +  A  I+H  +   LP+V +D 
Sbjct: 160 LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN 198

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPR----GILTSKDILMRVISQNLPADSTL 210
           V +SP+ TV    +  +    S   +T          GI+TS+D  +  +++     +TL
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRD--IDFLAEK--DHTTL 174

Query: 211 VEKVMTPNPECAT--IDTPIVDALHIMHDGKFLHLPVVDRDGDVV 253
           + +VMTP  E         + +A  I+   K   LP+V+   ++V
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELV 219

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 15/137 (10%), Positives = 41/137 (29%), Gaps = 13/137 (9%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--KPRGILTSKDILMRVISQNLPADS 208
            +  V +    TV  A   M + R+    V  ++     G++  + ++ +++S N     
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSD 451

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD-------VVDVVDVI-H 260
               K +            +     ++       + ++ ++         +   +DV   
Sbjct: 452 P-AIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTF 508

Query: 261 ITHAAVATVGNTAGSNN 277
           I         N   +  
Sbjct: 509 IAAGKQKPKANGTTNGG 525

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSKDILMRVISQNLPADSTLV 211
             ++P   V  A + M   R+S   +       K  GI+T++D  MR IS      +  +
Sbjct: 101 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRD--MRFISD----YNAPI 154

Query: 212 EKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
            + MT      A + T +  A  I+H+ +   LP+VD  G
Sbjct: 155 SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG 194

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 238
           VV  + + +G+L+ +D+++           T V ++M P       DT   +   +M D 
Sbjct: 196 VVDEKGRLKGVLSLRDLIVA-------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADY 248

Query: 239 KFLHLPVVDRDGDVV------DVVDVIH 260
            F  LPVVD +G +V      DV+DV+ 
Sbjct: 249 DFTVLPVVDEEGRLVGIVTVDDVLDVLE 276

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVT---VENKPRGILTSKDILMRVISQNLPADSTLV 211
             ++P   V  A   M + R+S   V     E K  GI+T++D  MR I       S  +
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD--MRFIQD----YSIKI 177

Query: 212 EKVMTPNP-ECATIDTPIVDALHIMHDGKFLHLPVVDRDG 250
             VMT      A + T + +A  I+   K   LP+VD +G
Sbjct: 178 SDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG 217

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 238
           VV  EN   G+++ +D+++         D TL+  ++        +     D    + D 
Sbjct: 178 VVDQENHLVGVISLRDLIVN-------DDDTLIADILNERVISVHVGDDQEDVAQTIRDY 230

Query: 239 KFLHLPVVDRDGDVV------DVVDVIH 260
            FL +PV D D  ++      D++DVI 
Sbjct: 231 DFLAVPVTDYDDHLLGIVTVDDIIDVID 258

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 238
           +V   +K  G +   DI               +  +++ +    T +T ++DA   +   
Sbjct: 93  IVDEADKYLGTVRRYDIFKH-------EPHEPLISLLSEDSRALTANTTLLDAAEAIEHS 145

Query: 239 KFLHLPVVDRDGDVV------DVVDVIH 260
           + + LPV+D  G+++          ++ 
Sbjct: 146 REIELPVIDDAGELIGRVTLRAATALVR 173

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 179 VVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 238
           VV  + + +G+L+ +D+++           T V ++M P       DT   +   +M D 
Sbjct: 176 VVDEKGRLKGVLSLRDLIVA-------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADY 228

Query: 239 KFLHLPVVDRDGDVV------DVVDVIH 260
            F  LPVVD +G +V      DV+DV+ 
Sbjct: 229 DFTVLPVVDEEGRLVGIVTVDDVLDVLE 256

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 19/173 (10%)

Query: 41  TPVSKVMTRNP-----TFVLSDTLAV-EALQKMVQGKFRHLPVVENGEVIALLDIAKCLY 94
           T    VM         T +  D++ V +    + +  +   PVV + E   L+       
Sbjct: 11  TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFV-LRR 69

Query: 95  DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154
           D I  +E A +K   + +            +         LR  +               
Sbjct: 70  DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS-----------P 118

Query: 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPAD 207
            T++    + +      +L L   +VT   +  GI+T KD+L + I+Q    D
Sbjct: 119 FTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVL-KHIAQMANQD 170

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 7/73 (9%)

Query: 33  ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DI 89
                     +  ++  +P  V   T     +    +   R   V  NG ++ ++   D+
Sbjct: 100 LPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDV 159

Query: 90  AKCLYDAIARMER 102
            K     IA+M  
Sbjct: 160 LK----HIAQMAN 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 45/292 (15%), Positives = 90/292 (30%), Gaps = 83/292 (28%)

Query: 17  LLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLP 76
           +   IL+ ++I        + + +  VS       T  L  TL   + Q+ +  KF    
Sbjct: 41  MPKSILSKEEI------DHIIMSKDAVSG------TLRLFWTL--LSKQEEMVQKF---- 82

Query: 77  VVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLR 136
            VE      L    K L   I       +        +E  ++ +  +       +   R
Sbjct: 83  -VEE----VLRINYKFLMSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--R 133

Query: 137 ERMF---RPSLSTIIPE------------KSKVVTISPTDTVLMATKKMLELRLSSAV-- 179
            + +   R +L  + P             K+  V +     V ++ K  ++ ++   +  
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALD----VCLSYK--VQCKMDFKIFW 186

Query: 180 VTV--ENKPRGILTSKDILMRVISQNL--PADSTLVEKVMT--------------PNPEC 221
           + +   N P  +L     L+  I  N    +D +   K+                P   C
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 222 ATI-----DTPIVDALHIMHDG--KFLHLPVVDRDGDVVDVVDVIHITHAAV 266
             +     +    +A     +   K L   +  R   V D +     TH ++
Sbjct: 247 LLVLLNVQNAKAWNAF----NLSCKIL---LTTRFKQVTDFLSAATTTHISL 291

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 12/175 (6%)

Query: 34  RELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRH-LPVVENG----EVIAL 86
           R     E    ++M        +  D+        + +   R   PV++        I+ 
Sbjct: 446 RRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISR 505

Query: 87  LDIAKCLYDAIARMERAAEKGKAI-----AAAVEGVEKHWGTSISGPNTFIETLRERMFR 141
            +I   L   +  +       + +     A   E +E     + SG ++        +  
Sbjct: 506 KEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLE 565

Query: 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
           P+ S ++P     + ++    V       + L  S   VT   K  GI+  +D+ 
Sbjct: 566 PTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLVGIVEREDVA 620

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	99.98
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.97
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.97
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.96
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.96
3ddj_A	296	CBS domain-containing protein; structural genomics	99.93
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.92
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.91
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.89
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.88
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.86
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.85
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.82
4esy_A	170	CBS domain containing membrane protein; structural	99.82
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.82
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.81
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.81
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.81
4esy_A	170	CBS domain containing membrane protein; structural	99.8
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.8
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.8
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.8
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.79
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.79
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.79
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.79
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.79
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.79
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.79
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.79
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.79
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.78
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.78
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.78
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.78
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.77
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.77
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.77
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.77
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.76
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.76
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.76
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.76
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.76
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.75
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.75
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.75
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.75
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.75
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.75
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.74
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.73
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.72
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.72
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.72
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.7
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.7
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.7
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.7
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.7
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.69
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.69
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.68
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.68
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.68
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.68
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.68
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.68
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.67
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.67
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.67
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.67
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.67
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.66
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.66
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.66
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.66
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.66
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.66
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.65
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.65
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.65
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.64
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.64
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.64
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.64
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.63
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.63
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.62
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.61
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.61
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.61
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.6
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.6
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.59
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.59
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.58
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.58
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.56
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.55
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.55
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.51
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.48
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.47
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.45
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.44
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.43
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.42
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.42
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.41
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.41
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.38
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.38
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.37
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.35
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.28
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.26
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.23
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.22
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.21
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.15
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.13
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.11
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.02
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.0
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.95
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.58

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=2.6e-32  Score=236.90  Aligned_cols=223  Identities=18%  Similarity=0.276  Sum_probs=187.7

Q ss_pred             CCCCCcCEEEEECC-CCcEEEEEehhHHHHHHHH-------hcc------CCcccccccccccCceEEeCCCcHHHHHHH
Q 021709            1 MAARRVDALLLTDS-NALLCGILTDKDIATRVIA-------REL------NLEETPVSKVMTRNPTFVLSDTLAVEALQK   66 (308)
Q Consensus         1 m~~~~~~~~~V~~~-~~~~~Giit~~D~~~~~~~-------~~~------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~   66 (308)
                      |.+++++++||+|+ +++++|++|..|+++.+..       ...      ...+.+++++|.++++++.+++++.+|++.
T Consensus        30 m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~  109 (280)
T 3kh5_A           30 MNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIET  109 (280)
T ss_dssp             HHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBCSCCCEETTCBHHHHHHH
T ss_pred             HHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcCCCCEEECCCCCHHHHHHH
Confidence            56789999999996 7899999999999854311       000      112458999999999999999999999999


Q ss_pred             hHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcc
Q 021709           67 MVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLS  145 (308)
Q Consensus        67 m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  145 (308)
                      |.+++++++||+| +|+++|+++..|+++.....                                      .....++.
T Consensus       110 ~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~--------------------------------------~~~~~~v~  151 (280)
T 3kh5_A          110 FLTKNVGGAPIVNDENQLISLITERDVIRALLDK--------------------------------------IDENEVID  151 (280)
T ss_dssp             HHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG--------------------------------------SCTTCBSG
T ss_pred             HHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc--------------------------------------CCCCCCHH
Confidence            9999999999998 69999999999987542210                                      01223688


Q ss_pred             cccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCC-----------Cccccccccc
Q 021709          146 TIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL-----------PADSTLVEKV  214 (308)
Q Consensus       146 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~-----------~~~~~~v~~~  214 (308)
                      ++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|++ +.+....           .....++.++
T Consensus       152 ~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~  228 (280)
T 3kh5_A          152 DYIT--RDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFI-KLLGSDWAFNHMQTGNVREITNVRMEEI  228 (280)
T ss_dssp             GGCB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHTSHHHHHHHHSCCTHHHHHCBHHHH
T ss_pred             HHhC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHH-HHHhhhhhhhhhcccchhhhhCCcHHHH
Confidence            8887  689999999999999999999999999999999999999999997 4443211           0124688999


Q ss_pred             cccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (308)
Q Consensus       215 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~  264 (308)
                      |.+++.++++++++.+++++|.+++.+++||+|++|+++|+||..||+++
T Consensus       229 m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~  278 (280)
T 3kh5_A          229 MKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKY  278 (280)
T ss_dssp             SBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGG
T ss_pred             hcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHh
Confidence            99999999999999999999999999999999998999999999999975

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.98  E-value=8.3e-32  Score=235.91  Aligned_cols=226  Identities=20%  Similarity=0.215  Sum_probs=190.6

Q ss_pred             CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhc---------cCCcccccccccccCceEEeCCCcHHHHHHHhHhCC
Q 021709            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARE---------LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGK   71 (308)
Q Consensus         1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~---------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~   71 (308)
                      |.+++++++||+|  ++++|++|.+|+++.+....         ......+++++|.++++++.+++++.+|+++|.+++
T Consensus        46 m~~~~~~~~~V~d--~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~  123 (296)
T 3ddj_A           46 INEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN  123 (296)
T ss_dssp             TTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHT
T ss_pred             HHHCCCceEEEEC--CeEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcC
Confidence            7889999999999  88999999999985442110         112356899999999999999999999999999999


Q ss_pred             CcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCC
Q 021709           72 FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPE  150 (308)
Q Consensus        72 ~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  150 (308)
                      ++++||+| +|+++|+++..|+++...                                       ......++.++|. 
T Consensus       124 ~~~lpVvd~~~~lvGivt~~dl~~~~~---------------------------------------~~~~~~~v~~~m~-  163 (296)
T 3ddj_A          124 FGSLPVVDINDKPVGIVTEREFLLLYK---------------------------------------DLDEIFPVKVFMS-  163 (296)
T ss_dssp             CSEEEEECTTSCEEEEEEHHHHGGGGG---------------------------------------GSCCCCBHHHHSB-
T ss_pred             CCEEEEEcCCCcEEEEEeHHHHHHhhh---------------------------------------cccccccHHHhhc-
Confidence            99999997 689999999999875311                                       0012345778887 


Q ss_pred             CCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC-----CccccccccccccCceeecC
Q 021709          151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTLVEKVMTPNPECATI  224 (308)
Q Consensus       151 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~-----~~~~~~v~~~~~~~~~~v~~  224 (308)
                       +++.++++++++.++++.|.+++++++||++ +|+++|++|.+|++..+.....     .....++.++|.+++.++++
T Consensus       164 -~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~  242 (296)
T 3ddj_A          164 -TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDE  242 (296)
T ss_dssp             -CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCT
T ss_pred             -CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhCCCCeEECC
Confidence             6899999999999999999999999999999 8999999999999744431110     11245889999999999999


Q ss_pred             CCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHh
Q 021709          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (308)
Q Consensus       225 ~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~  269 (308)
                      ++++.+++++|.+++.+++||+|++|+++|+||..||++++....
T Consensus       243 ~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~  287 (296)
T 3ddj_A          243 LASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  287 (296)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999887644

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.97  E-value=2e-30  Score=229.87  Aligned_cols=230  Identities=16%  Similarity=0.185  Sum_probs=183.1

Q ss_pred             CCCCCcCEEEEECCC-CcEEEEEehhHHHHHHHHh---cc------CCcccc------cccccccCceEEeCCCcHHHHH
Q 021709            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIAR---EL------NLEETP------VSKVMTRNPTFVLSDTLAVEAL   64 (308)
Q Consensus         1 m~~~~~~~~~V~~~~-~~~~Giit~~D~~~~~~~~---~~------~~~~~~------v~~im~~~~~~v~~~~~l~~a~   64 (308)
                      |.+++++++||+|++ ++++|++|..|+++.+..-   ..      ......      +.++|.++++++.+++++.+|+
T Consensus        58 m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~  137 (323)
T 3t4n_C           58 LLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEAC  137 (323)
T ss_dssp             HHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHH
T ss_pred             HHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHH
Confidence            567899999999975 4999999999999544221   00      001112      2334578899999999999999


Q ss_pred             HHhHhCCCcEeeEee-CCe-----EEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHH
Q 021709           65 QKMVQGKFRHLPVVE-NGE-----VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRER  138 (308)
Q Consensus        65 ~~m~~~~~~~~pVvd-~~~-----~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (308)
                      +.|.+++++++||++ +++     ++|+++..|+++........                                  ..
T Consensus       138 ~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~----------------------------------~~  183 (323)
T 3t4n_C          138 LKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE----------------------------------TH  183 (323)
T ss_dssp             HHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG----------------------------------GG
T ss_pred             HHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc----------------------------------hh
Confidence            999999999999998 453     99999999998764321100                                  11


Q ss_pred             hcCCCcccc---cCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC-Ccccccccc
Q 021709          139 MFRPSLSTI---IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTLVEK  213 (308)
Q Consensus       139 ~~~~~v~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~-~~~~~~v~~  213 (308)
                      ....++.++   |.  +++.++.+++++.++++.|.+++++++||++ +|+++|++|.+|++ +.+..+. .....++.+
T Consensus       184 ~~~~~v~~~~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~-~~~~~~~~~~~~~~v~~  260 (323)
T 3t4n_C          184 FLKIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL-GLIKGGIYNDLSLSVGE  260 (323)
T ss_dssp             GCCSBGGGTTCSBC--TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHH-HHHHTTHHHHTTSBHHH
T ss_pred             hhhCcHHHcCCCCC--CCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHH-HHHhhchhhhccCCHHH
Confidence            234567788   75  7899999999999999999999999999999 79999999999997 4444322 223568999


Q ss_pred             cccc------CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          214 VMTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       214 ~~~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      +|.+      ++.++++++++.+++++|.+++.+++||+|++|+++|+||..||+++++.
T Consensus       261 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          261 ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             HGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             HHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            9987      78999999999999999999999999999999999999999999998875

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=3.5e-30  Score=223.80  Aligned_cols=219  Identities=18%  Similarity=0.247  Sum_probs=174.1

Q ss_pred             CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-
Q 021709            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-   79 (308)
Q Consensus         1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-   79 (308)
                      |.+++++.+||+|++|+++|++|..|+++.+       .+.+++++|.+++.++++++++.+|++.|.+++.+.+||++ 
T Consensus        27 ~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~-------~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~   99 (282)
T 2yzq_A           27 FKKYKVRSFPVVNKEGKLVGIISVKRILVNP-------DEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS   99 (282)
T ss_dssp             -----CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHHcCCCeEEEEcCCCcEEEEEEHHHHHhhh-------ccCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            5788999999999889999999999998432       35689999998899999999999999999999999999998 


Q ss_pred             CCeEEEEEeHHHHHH-HHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeC
Q 021709           80 NGEVIALLDIAKCLY-DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS  158 (308)
Q Consensus        80 ~~~~vGivs~~dll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~  158 (308)
                      +|+++|+++..|+++ .....                                     ......++.++|.  .++.+++
T Consensus       100 ~~~~~Giit~~di~~~~~~~~-------------------------------------~~~~~~~v~~~m~--~~~~~v~  140 (282)
T 2yzq_A          100 KGKPVGILTVGDIIRRYFAKS-------------------------------------EKYKGVEIEPYYQ--RYVSIVW  140 (282)
T ss_dssp             TSCEEEEEEHHHHHHHTTTTC-------------------------------------SGGGGCBSTTTSB--SCCCCEE
T ss_pred             CCEEEEEEEHHHHHHHHHhcc-------------------------------------CCcccCcHHHHhC--CCCEEEC
Confidence            589999999999975 31100                                     0012345788886  7889999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH------HHHH------hc-----------------CCCccc
Q 021709          159 PTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL------MRVI------SQ-----------------NLPADS  208 (308)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~------~~~~------~~-----------------~~~~~~  208 (308)
                      +++++.++++.|.+++++++||++ +|+++|++|.+|++      +.+.      ..                 ......
T Consensus       141 ~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (282)
T 2yzq_A          141 EGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPN  220 (282)
T ss_dssp             TTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------------------CC
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhcc
Confidence            999999999999999999999998 88999999999996      2221      00                 011125


Q ss_pred             cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      .+++++|.+++.++.+++++.+++++|.+++++++||+|++|+++|+||+.||++++
T Consensus       221 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~  277 (282)
T 2yzq_A          221 KPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  277 (282)
T ss_dssp             CBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             CCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHH
Confidence            689999999999999999999999999999999999999888999999999999754

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.96  E-value=8.2e-29  Score=220.48  Aligned_cols=232  Identities=16%  Similarity=0.170  Sum_probs=184.0

Q ss_pred             CCCCCcCEEEEECCC-CcEEEEEehhHHHHHHHHhcc---CCc------cccccc-------ccccCc--eEEeCCCcHH
Q 021709            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIAREL---NLE------ETPVSK-------VMTRNP--TFVLSDTLAV   61 (308)
Q Consensus         1 m~~~~~~~~~V~~~~-~~~~Giit~~D~~~~~~~~~~---~~~------~~~v~~-------im~~~~--~~v~~~~~l~   61 (308)
                      |.+++++++||++++ ++++|++|.+|+++.+.....   ...      ..+++.       +|.+++  +++.+++++.
T Consensus        50 ~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~  129 (334)
T 2qrd_G           50 LTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLM  129 (334)
T ss_dssp             HHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHH
T ss_pred             HHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHH
Confidence            456789999999976 799999999999954432100   111      233333       356666  9999999999


Q ss_pred             HHHHHhHhCCCcEeeEeeC-C-e----EEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHH
Q 021709           62 EALQKMVQGKFRHLPVVEN-G-E----VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETL  135 (308)
Q Consensus        62 ~a~~~m~~~~~~~~pVvd~-~-~----~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (308)
                      +|++.|.+++++++||+++ + +    ++|+++..|+++.......                                  
T Consensus       130 ~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~----------------------------------  175 (334)
T 2qrd_G          130 DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK----------------------------------  175 (334)
T ss_dssp             HHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG----------------------------------
T ss_pred             HHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc----------------------------------
Confidence            9999999999999999973 3 4    9999999999865332100                                  


Q ss_pred             HHHhcCCCccc---ccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC-Cccccc
Q 021709          136 RERMFRPSLST---IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTL  210 (308)
Q Consensus       136 ~~~~~~~~v~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~-~~~~~~  210 (308)
                      .......++.+   +|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|++ +.+..+. .....+
T Consensus       176 ~~~~~~~~v~~l~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~-~~~~~~~~~~~~~~  252 (334)
T 2qrd_G          176 ETAMLRVPLNQMTIGTW--SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVM-HLIQDGDYSNLDLS  252 (334)
T ss_dssp             GGGGCCCBGGGSSCSBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHH-HHHTTSCGGGGGSB
T ss_pred             chhhhhCcHHHhCCccc--CCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHH-HHhhccccccccCc
Confidence            00012345677   465  7899999999999999999999999999999 78999999999996 5554432 233568


Q ss_pred             ccccccc------CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHh
Q 021709          211 VEKVMTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (308)
Q Consensus       211 v~~~~~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~  269 (308)
                      +.++|.+      ++.++++++++.+++++|.+++.+++||+|++|+++|+||..||++++....
T Consensus       253 v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~  317 (334)
T 2qrd_G          253 VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK  317 (334)
T ss_dssp             HHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCC
T ss_pred             HHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcc
Confidence            8999984      8899999999999999999999999999998999999999999999776533

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.96  E-value=4e-28  Score=215.69  Aligned_cols=235  Identities=18%  Similarity=0.222  Sum_probs=181.9

Q ss_pred             CCCCCcCEEEEECCC-CcEEEEEehhHHHHHHHHhc-------cCCcccc-------cccccccCceEEeCCCcHHHHHH
Q 021709            1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARE-------LNLEETP-------VSKVMTRNPTFVLSDTLAVEALQ   65 (308)
Q Consensus         1 m~~~~~~~~~V~~~~-~~~~Giit~~D~~~~~~~~~-------~~~~~~~-------v~~im~~~~~~v~~~~~l~~a~~   65 (308)
                      |.+++++++||++.+ ++++|++|.+|+++.+....       .......       ++++|.++++++.+++++.+|++
T Consensus        63 ~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~  142 (330)
T 2v8q_E           63 LVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVS  142 (330)
T ss_dssp             HHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHH
T ss_pred             HHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHH
Confidence            456789999999977 78999999999996443211       0111222       34678899999999999999999


Q ss_pred             HhHhCCCcEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCC
Q 021709           66 KMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPS  143 (308)
Q Consensus        66 ~m~~~~~~~~pVvd--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (308)
                      .|.+++++++||++  +|+++|+++..|+++......                     +.... ..         +...+
T Consensus       143 ~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~---------------------~~~~~-~~---------~~~~~  191 (330)
T 2v8q_E          143 SLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI---------------------TEFPK-PE---------FMSKS  191 (330)
T ss_dssp             HHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHS---------------------CSSSC-CG---------GGGSB
T ss_pred             HHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHh---------------------hccCc-hh---------hhcCC
Confidence            99999999999998  589999999999986532110                     00000 00         01112


Q ss_pred             cccc--cCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC-CCccccccccccc---
Q 021709          144 LSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMT---  216 (308)
Q Consensus       144 v~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~-~~~~~~~v~~~~~---  216 (308)
                      +.++  |. ..++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|++ +..... ......++.++|.   
T Consensus       192 v~~~~v~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~-~~~~~~~~~~~~~~v~~~~~~~~  269 (330)
T 2v8q_E          192 LEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVI-NLAAEKTYNNLDVSVTKALQHRS  269 (330)
T ss_dssp             HHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTG-GGGGSSCCCCCSSBHHHHGGGCC
T ss_pred             HHHhcccC-cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHH-HHHhccccccccCcHHHHHhccc
Confidence            3332  21 15688999999999999999999999999999 89999999999996 444322 2222457888884   


Q ss_pred             ---cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          217 ---PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       217 ---~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                         +++.++++++++.+++++|.+++.+++||+|++|+++|+||..||++++...
T Consensus       270 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          270 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred             cccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhh
Confidence               7899999999999999999999999999999889999999999999977643

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.93  E-value=6.5e-25  Score=192.01  Aligned_cols=200  Identities=20%  Similarity=0.265  Sum_probs=167.3

Q ss_pred             ccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021709           35 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (308)
Q Consensus        35 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~  114 (308)
                      ..+....+++++|.++++++++++++.+|++.|.+++++++||++ ++++|++|..|+++........            
T Consensus        14 ~~~~~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~~l~GivT~~Di~~~~~~~~~~------------   80 (296)
T 3ddj_A           14 NLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLLSTVESYCKD------------   80 (296)
T ss_dssp             CCTTCCSSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHHGGGTTCC--------------
T ss_pred             hhhhcccCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-CeEEEEEeHHHHHHHhcccccc------------
Confidence            445667899999999999999999999999999999999999999 9999999999998653210000            


Q ss_pred             hhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHH
Q 021709          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (308)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~  193 (308)
                                    ......+. .....++.++|.  +++.++.+++++.++++.|.+++++++||++ +++++|++|.+
T Consensus        81 --------------~~~~~~~~-~~~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~  143 (296)
T 3ddj_A           81 --------------SCSQGDLY-HISTTPIIDYMT--PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTER  143 (296)
T ss_dssp             ---------------CCHHHHH-HHHTSBGGGTSE--ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred             --------------cccchhhH-HHhcccHHHhcc--CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHH
Confidence                          00011111 122456899998  6889999999999999999999999999998 88999999999


Q ss_pred             HHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          194 DILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       194 dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      |++ +.+.....  ..++.++|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++..
T Consensus       144 dl~-~~~~~~~~--~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~  214 (296)
T 3ddj_A          144 EFL-LLYKDLDE--IFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK  214 (296)
T ss_dssp             HHG-GGGGGSCC--CCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             HHH-Hhhhcccc--cccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            996 44433332  458999999999999999999999999999999999999999999999999999998764

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.92  E-value=1.1e-23  Score=182.49  Aligned_cols=195  Identities=19%  Similarity=0.296  Sum_probs=158.1

Q ss_pred             ccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhcc
Q 021709           44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (308)
Q Consensus        44 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (308)
                      +.+|.++++++++++++.+|++.|.+++++++||++  +|+++|+++..|+++.........            .++.. 
T Consensus         7 ~~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~------------~~~~~-   73 (280)
T 3kh5_A            7 KIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYN------------LIREK-   73 (280)
T ss_dssp             GTSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGH------------HHHTT-
T ss_pred             HHhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhh------------hhhhc-
Confidence            456778999999999999999999999999999998  589999999999987532100000            00000 


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHH
Q 021709          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (308)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~  200 (308)
                           ......     .....+++++|.  +++.++++++++.++++.|.+++++++||++ +|+++|++|.+|++ +.+
T Consensus        74 -----~~~~~~-----~~~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~  140 (280)
T 3kh5_A           74 -----HERNFL-----AAINEPVREIME--ENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI-RAL  140 (280)
T ss_dssp             -----STTCHH-----HHTTSBGGGTSB--CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHH-HHH
T ss_pred             -----cccchh-----HHhhhhHHHhcC--CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHH-HHH
Confidence                 000000     012457899998  6899999999999999999999999999998 89999999999996 555


Q ss_pred             hcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       201 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      ...... ..++.++|.+++.++++++++.++++.|.+++.+++||+ ++|+++|+||..||++++.
T Consensus       141 ~~~~~~-~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          141 LDKIDE-NEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             GGGSCT-TCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHT
T ss_pred             hhcCCC-CCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHh
Confidence            444332 348999999999999999999999999999999999999 5899999999999998763

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.91  E-value=5.3e-24  Score=184.75  Aligned_cols=176  Identities=27%  Similarity=0.388  Sum_probs=138.8

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (308)
                      +++++|.++++++++++++.+|+++|.+++++++||++ +|+++|+++..|++...                        
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~------------------------   57 (282)
T 2yzq_A            2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP------------------------   57 (282)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC----------------------------
T ss_pred             chHHhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhhh------------------------
Confidence            57899999999999999999999999999999999998 79999999999987431                        


Q ss_pred             cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~  199 (308)
                                         ...++.++|.  +++.++++++++.++++.|.+++.+.+||++ +|+++|++|..|++++.
T Consensus        58 -------------------~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~  116 (282)
T 2yzq_A           58 -------------------DEEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (282)
T ss_dssp             -------------------------CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             -------------------ccCCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence                               1234778887  5689999999999999999999999999999 78999999999996414


Q ss_pred             HhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHH
Q 021709          200 ISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  262 (308)
Q Consensus       200 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~  262 (308)
                      +.........+++++|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||..|++
T Consensus       117 ~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          117 FAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL  179 (282)
T ss_dssp             TTTCSGGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred             HhccCCcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence            443222235678999999999999999999999999999999999999899999999999999

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.89  E-value=8e-22  Score=174.45  Aligned_cols=206  Identities=16%  Similarity=0.225  Sum_probs=155.9

Q ss_pred             ccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021709           39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (308)
Q Consensus        39 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~  114 (308)
                      ...++.++|.+  ++++++.++++.+|++.|.+++++++||+++  ++++|+++..|++...........        ..
T Consensus        28 ~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~--------~~   99 (323)
T 3t4n_C           28 NSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPD--------KF   99 (323)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGG--------GG
T ss_pred             HhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcc--------hh
Confidence            56689999974  6789999999999999999999999999984  599999999999876443211000        00


Q ss_pred             hhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCE-----EEE
Q 021709          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK-----PRG  188 (308)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~-----~~G  188 (308)
                      ..++.       ..   ...+.+.+.   ..++|.  ++++++++++++.++++.|.+++++++||++ ++.     ++|
T Consensus       100 ~~l~~-------~~---~~~v~~i~~---~~~~~~--~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~G  164 (323)
T 3t4n_C          100 ELVDK-------LQ---LDGLKDIER---ALGVDQ--LDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVS  164 (323)
T ss_dssp             GGGGG-------CB---HHHHHHHHH---HTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEE
T ss_pred             HHHHH-------HH---HHHHHHHHH---HhCCCC--CCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEE
Confidence            00000       00   011111111   234444  6789999999999999999999999999998 554     999


Q ss_pred             EeeHHHHHHHHHhcC--CCccccccccc---cccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          189 ILTSKDILMRVISQN--LPADSTLVEKV---MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       189 ivt~~dl~~~~~~~~--~~~~~~~v~~~---~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      ++|.+|+++.+....  ......++.++   |.+++.++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus       165 ivt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~  244 (323)
T 3t4n_C          165 VLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLG  244 (323)
T ss_dssp             EEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHH
T ss_pred             EecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHH
Confidence            999999974443221  11224578888   8889999999999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 021709          264 AAVA  267 (308)
Q Consensus       264 ~~~~  267 (308)
                      ++..
T Consensus       245 ~~~~  248 (323)
T 3t4n_C          245 LIKG  248 (323)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            7653

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.88  E-value=2.6e-21  Score=171.75  Aligned_cols=203  Identities=21%  Similarity=0.194  Sum_probs=154.9

Q ss_pred             cccccccc--ccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           40 ETPVSKVM--TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        40 ~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      +.+++++|  .++++++++++++.+|++.|.+++++++||++ + ++++|+++..|++...........           
T Consensus        34 ~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~-----------  102 (330)
T 2v8q_E           34 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL-----------  102 (330)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT-----------
T ss_pred             cCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc-----------
Confidence            45899999  78899999999999999999999999999998 4 689999999999876443211100           


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHH
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSK  193 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~  193 (308)
                         ....  ...... ......     ++.++|.  +++.++++++++.++++.|.+++.+++||++  +|+++|++|.+
T Consensus       103 ---~~~~--~l~~~~-~~~~~~-----~~~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~  169 (330)
T 2v8q_E          103 ---VQIY--ELEEHK-IETWRE-----VYLQDSF--KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK  169 (330)
T ss_dssp             ---TTCC--CGGGCB-HHHHHH-----HHSSSSC--CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHH
T ss_pred             ---cchh--HHhhcc-HHHHHH-----HHhhccc--CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHH
Confidence               0000  000000 111111     2456676  7899999999999999999999999999998  68999999999


Q ss_pred             HHHHHHHhcCCC-----ccccccccc--cc-cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          194 DILMRVISQNLP-----ADSTLVEKV--MT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       194 dl~~~~~~~~~~-----~~~~~v~~~--~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      |+++.+......     ....+++++  |. +++.++.+++++.++++.|.+++.+++||+|++|+++|+||..||+++.
T Consensus       170 dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~  249 (330)
T 2v8q_E          170 RILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLA  249 (330)
T ss_dssp             HHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGG
T ss_pred             HHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHH
Confidence            997444322111     012344444  44 7889999999999999999999999999999899999999999999755


Q ss_pred             H
Q 021709          266 V  266 (308)
Q Consensus       266 ~  266 (308)
                      .
T Consensus       250 ~  250 (330)
T 2v8q_E          250 A  250 (330)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.86  E-value=2e-20  Score=166.16  Aligned_cols=207  Identities=13%  Similarity=0.147  Sum_probs=152.9

Q ss_pred             cccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        40 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      +.+++++|.+  +++++++++++.+|++.|.+++++++||+++  ++++|+++..|++........... ..       .
T Consensus        21 ~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~-~~-------~   92 (334)
T 2qrd_G           21 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSS-FP-------E   92 (334)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCS-CG-------G
T ss_pred             cCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccC-Cc-------c
Confidence            4689999964  5789999999999999999999999999984  699999999999865432211000 00       0


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CE----EEEE
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NK----PRGI  189 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~----~~Gi  189 (308)
                      ... .  ..........+.+         .++|.+..+++++++++++.++++.|.+++.+++||++ + +.    ++|+
T Consensus        93 ~~~-~--~~~~~~~~i~~~l---------~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Gi  160 (334)
T 2qrd_G           93 AIA-E--IDKFRLLGLREVE---------RKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV  160 (334)
T ss_dssp             GGG-G--GGSCBHHHHHHHH---------HHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEE
T ss_pred             HHH-H--HhhhchhhHHHHH---------HhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEE
Confidence            000 0  0000001111111         23444212338999999999999999999999999998 4 34    9999


Q ss_pred             eeHHHHHHHHHhcCC--Ccccccccc---ccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709          190 LTSKDILMRVISQNL--PADSTLVEK---VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (308)
Q Consensus       190 vt~~dl~~~~~~~~~--~~~~~~v~~---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~  264 (308)
                      +|.+|+++.+.....  .....++++   +|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||..||+++
T Consensus       161 vt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~  240 (334)
T 2qrd_G          161 LTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL  240 (334)
T ss_dssp             EEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHH
T ss_pred             eeHHHHHHHHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHH
Confidence            999999744432211  112356777   488899999999999999999999999999999988999999999999986


Q ss_pred             HH
Q 021709          265 AV  266 (308)
Q Consensus       265 ~~  266 (308)
                      +.
T Consensus       241 ~~  242 (334)
T 2qrd_G          241 IQ  242 (334)
T ss_dssp             HT
T ss_pred             hh
Confidence            54

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.85  E-value=1.4e-20  Score=148.87  Aligned_cols=128  Identities=20%  Similarity=0.254  Sum_probs=112.0

Q ss_pred             CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCc---ccccccccccc
Q 021709          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA---DSTLVEKVMTP  217 (308)
Q Consensus       142 ~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~---~~~~v~~~~~~  217 (308)
                      ..++++|.|+.++.++++++++.+|+++|.+++++++||++ +++++|++|.+|+++.+.......   ...++.++|.+
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~   94 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT   94 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBC
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcC
Confidence            45889999888999999999999999999999999999998 799999999999975555443321   25689999999


Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcC
Q 021709          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (308)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~  271 (308)
                      ++.++++++++.++++.|.+++  .+||||++|+++|+||+.||++++......
T Consensus        95 ~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~~  146 (156)
T 3k6e_A           95 DVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLHD  146 (156)
T ss_dssp             SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSCC
T ss_pred             CceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhcc
Confidence            9999999999999999998776  499999999999999999999988776654

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.82  E-value=1.2e-19  Score=142.14  Aligned_cols=125  Identities=18%  Similarity=0.204  Sum_probs=111.0

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      +...+++++|.+..++.++++++++.++++.|.+++++++||++ + |+++|++|.+|++..+....    ..++.++| 
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m-   94 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN----KIELEEIL-   94 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----CCCGGGTC-
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC----CccHHHhc-
Confidence            45677999998544899999999999999999999999999999 5 89999999999964443332    45889999 


Q ss_pred             cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                      +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++++++.
T Consensus        95 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A           95 RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred             CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence            8999999999999999999999999999999999999999999999988763

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.82  E-value=6.9e-21  Score=152.92  Aligned_cols=126  Identities=25%  Similarity=0.261  Sum_probs=108.4

Q ss_pred             HhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC-------------
Q 021709          138 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------------  203 (308)
Q Consensus       138 ~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~-------------  203 (308)
                      .+...+++++|.  ++++++.+++++.+|++.|.+++++++||+| +|+++|+||.+|+++......             
T Consensus        14 ~l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~   91 (170)
T 4esy_A           14 AIRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIP   91 (170)
T ss_dssp             HHHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSC
T ss_pred             HHcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccc
Confidence            345678999998  7899999999999999999999999999999 899999999999963221100             


Q ss_pred             --------CCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          204 --------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       204 --------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                              ......+++++|++++.++++++++.+++++|.+++++++||+| +|+++|+||..||+++++
T Consensus        92 ~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A           92 APEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             HHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSC
T ss_pred             hhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence                    00113578999999999999999999999999999999999998 699999999999998664

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.82  E-value=5.7e-20  Score=140.91  Aligned_cols=123  Identities=17%  Similarity=0.195  Sum_probs=107.7

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCce
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~  220 (308)
                      +++++|.+..++.++++++++.++++.|.+++++++||++  +++++|++|.+|++ +....+......++.++| +++.
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~-~~~~~~~~~~~~~v~~~m-~~~~   80 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEFTKEIMLRAA-DEIY   80 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHH-HHHTSSSCCCHHHHHHHS-BCCC
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHH-HHHhccCccchhhHHHhc-cCCe
Confidence            4678886545799999999999999999999999999996  47999999999996 555554433345788999 6889


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ++++++++.++++.|.+++.+.+||+|++|+++|+||..||++++++
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           81 FVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             EEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999998764

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.81  E-value=1.1e-19  Score=139.18  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=107.3

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~  217 (308)
                      ...+++++|.+...+.++++++++.++++.|.+++++++||++ + ++++|++|.+|++ +....+..  ..++.++|. 
T Consensus         4 ~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~-~~~~~~~~--~~~v~~~m~-   79 (130)
T 3i8n_A            4 QDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELF-KMQQSGSG--QKQLGAVMR-   79 (130)
T ss_dssp             ---CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHH-HHHHTTTT--TSBHHHHSE-
T ss_pred             CcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHH-HHHhcCCC--cCCHHHHhc-
Confidence            4556899998656678999999999999999999999999998 5 8999999999996 54444332  468899994 


Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++++++
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence            68999999999999999999999999999999999999999999998763

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.81  E-value=9.1e-19  Score=134.44  Aligned_cols=126  Identities=28%  Similarity=0.412  Sum_probs=111.7

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCce
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~  220 (308)
                      ..+++++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|++ +.+..+... ..++.++|.+++.
T Consensus         3 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~~~~~~~   78 (133)
T 2ef7_A            3 EEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSL-ETKAEEFMTASLI   78 (133)
T ss_dssp             CCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHHTTCCT-TCBGGGTSEECCC
T ss_pred             cccHHHhcc--CCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHH-HHHhcCCCc-ccCHHHHcCCCCE
Confidence            456889997  679999999999999999999999999999988999999999996 555544333 4689999999999


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhc
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~  270 (308)
                      ++++++++.++++.|.+++.+++||+|++|+++|+||..||++++.....
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~  128 (133)
T 2ef7_A           79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFE  128 (133)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC-
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHH
Confidence            99999999999999999999999999989999999999999998776544

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.81  E-value=2.4e-19  Score=144.23  Aligned_cols=127  Identities=14%  Similarity=0.125  Sum_probs=110.3

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      +...+++++|.+..++.++++++++.++++.|.+++++++||++ + ++++|++|.+|++ +....+.   ..++.++| 
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~-~~~~~~~---~~~v~~im-  113 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLL-SESIAGE---RLELVDLV-  113 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHH-HHHHTTC---CCCGGGGC-
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHH-HHHhhcC---cccHHHHh-
Confidence            34567899998656789999999999999999999999999999 5 8999999999996 4444332   45899999 


Q ss_pred             cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhc
Q 021709          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~  270 (308)
                      +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||+++++....
T Consensus       114 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~  167 (172)
T 3lhh_A          114 KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFF  167 (172)
T ss_dssp             BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC
T ss_pred             cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCc
Confidence            899999999999999999999999999999999999999999999998876443

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.80  E-value=7.2e-20  Score=146.96  Aligned_cols=143  Identities=23%  Similarity=0.307  Sum_probs=113.3

Q ss_pred             CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      ..+.+|+++|.++++++++++++.+|++.|.+++++++||+| +|+++|++|..|+++.............         
T Consensus        15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~---------   85 (170)
T 4esy_A           15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEI---------   85 (170)
T ss_dssp             HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHH---------
T ss_pred             HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhh---------
Confidence            346799999999999999999999999999999999999998 6899999999999865332111100000         


Q ss_pred             hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                            .....+..............++.++|.  ++++++++++++.+++++|.+++++++||+++|+++|+||.+|++
T Consensus        86 ------~~~~~~~~~~~~~~~~~~~~~v~~im~--~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil  157 (170)
T 4esy_A           86 ------LSRAIPAPEVEHLFETGRKLTASAVMT--QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLL  157 (170)
T ss_dssp             ------HTTTSCHHHHHHHHHHHTTCBHHHHCB--CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHT
T ss_pred             ------hhhccchhhHHhhhccccccchhhhcc--cCcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHH
Confidence                  000111222333444456678899998  789999999999999999999999999999999999999999997


Q ss_pred             H
Q 021709          197 M  197 (308)
Q Consensus       197 ~  197 (308)
                      +
T Consensus       158 ~  158 (170)
T 4esy_A          158 K  158 (170)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.80  E-value=1.4e-18  Score=137.71  Aligned_cols=134  Identities=20%  Similarity=0.228  Sum_probs=117.3

Q ss_pred             HHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 021709          135 LRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (308)
Q Consensus       135 ~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~  213 (308)
                      +...+...++.++|.  + ++++.+++++.+|++.|.+++++++||++ +|+++|+||.+|++ +.+.........++.+
T Consensus        10 l~~~l~~~~v~~im~--~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~   85 (159)
T 3fv6_A           10 LADKLKKLQVKDFQS--I-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL-RASIGQQELTSVPVHI   85 (159)
T ss_dssp             HHHHHTTCBGGGSCB--C-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH-HHHTSCSCTTTCBGGG
T ss_pred             HHHHHhhCCHHHHcC--C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH-HHhhccCcccCcCHHH
Confidence            455567778999997  4 56999999999999999999999999999 89999999999996 5443333334678999


Q ss_pred             cccc--CceeecCCCCHHHHHHHHHhCCCCEEEEECCCC---cEEEEEEhhHHHHHHHHHhcCC
Q 021709          214 VMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDG---DVVDVVDVIHITHAAVATVGNT  272 (308)
Q Consensus       214 ~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~---~~iGiit~~di~~~~~~~~~~~  272 (308)
                      +|.+  ++.++++++++.+++++|.+++.+++||+|++|   +++|+||..||++++.......
T Consensus        86 ~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~~~  149 (159)
T 3fv6_A           86 IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSENE  149 (159)
T ss_dssp             TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHTTC
T ss_pred             HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhhcc
Confidence            9998  899999999999999999999999999999888   9999999999999988777664

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.80  E-value=7.9e-20  Score=141.20  Aligned_cols=124  Identities=20%  Similarity=0.240  Sum_probs=105.5

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCce
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~  220 (308)
                      +++++|.+..++.++++++++.++++.|.+++++++||++ + ++++|++|.+|++ +.+..... ...+++++|.+ +.
T Consensus         4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~-~~~~~~~~-~~~~v~~~m~~-~~   80 (136)
T 3lfr_A            4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLL-PLILKADG-DSDDVKKLLRP-AT   80 (136)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGGGSSSG-GGCCGGGTCBC-CC
T ss_pred             ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHHhccC-CCcCHHHHcCC-Ce
Confidence            4678887556789999999999999999999999999999 5 7999999999996 44432222 35689999965 99


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHh
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~  269 (308)
                      ++.+++++.+++++|.+++.+.+||+|++|+++|+||..||++++.+..
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~  129 (136)
T 3lfr_A           81 FVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDI  129 (136)
T ss_dssp             EEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC----
T ss_pred             EECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999998776543

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.80  E-value=3.8e-19  Score=135.81  Aligned_cols=123  Identities=13%  Similarity=0.089  Sum_probs=108.8

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCce
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~  220 (308)
                      ..+++++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|++ +....+... ..++.++|.+++.
T Consensus         4 s~~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~m~~~~~   79 (128)
T 3gby_A            4 SVTFSYLAE--TDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLL-EGRKGWPTV-KEKLGEELLETVR   79 (128)
T ss_dssp             TCBGGGGCB--CCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-TTCSSSCCT-TCBCCGGGCBCCC
T ss_pred             ceEHHHhhc--CCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHH-HHHhhCCcc-cCcHHHHccCCCc
Confidence            456889998  779999999999999999999999999999999999999999995 444333221 3579999999999


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ++++++++.++++.|.+++.+++||+|++|+++|+||..||++++..
T Consensus        80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999987643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.79  E-value=9.9e-19  Score=132.12  Aligned_cols=117  Identities=25%  Similarity=0.289  Sum_probs=105.3

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCcee
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (308)
                      +++++|.  +++.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|++ +.+....    .++.++|.+++.+
T Consensus         2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~-~~~~~~~----~~v~~~~~~~~~~   74 (122)
T 3kpb_A            2 LVKDILS--KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA-KALAQNK----KTIEEIMTRNVIT   74 (122)
T ss_dssp             BHHHHCC--SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHH-HHHHTTC----CBGGGTSBSSCCC
T ss_pred             chHHhhC--CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHH-HHHHhcc----cCHHHHhcCCCeE
Confidence            4667887  6799999999999999999999999999999 89999999999996 5444332    2789999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      +++++++.+++++|.+++.+++||+|++|+++|+||..||++++.
T Consensus        75 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           75 AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             ECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence            999999999999999999999999998899999999999998754

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.79  E-value=3.9e-19  Score=140.09  Aligned_cols=126  Identities=14%  Similarity=0.138  Sum_probs=108.9

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEe-e--CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT-V--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      ...+++++|.++.++.++++++++.++++.|.+++++++||+ +  +|+++|+||.+|+++.+... .   ..++.++| 
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~-~---~~~v~~~m-   92 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID-D---KAKISTIM-   92 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH-T---TSBGGGTC-
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC-C---CCcHHHHh-
Confidence            345688999743489999999999999999999999999999 5  48999999999996444333 2   45899999 


Q ss_pred             cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhc
Q 021709          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~  270 (308)
                      +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++++++...
T Consensus        93 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~  146 (153)
T 3oco_A           93 RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLR  146 (153)
T ss_dssp             BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC---
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCC
Confidence            899999999999999999999999999999999999999999999998876443

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.79  E-value=8.7e-19  Score=134.95  Aligned_cols=124  Identities=27%  Similarity=0.464  Sum_probs=108.2

Q ss_pred             CcccccCCC-CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCcee
Q 021709          143 SLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (308)
Q Consensus       143 ~v~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (308)
                      +++++|.+. +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|+++.+...+......++.++|.+++.+
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~   86 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAY   86 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCC
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCeE
Confidence            456677522 4789999999999999999999999999999899999999999964455554444467899999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      +++++++.+++++|.+++.+++||+| +|+++|+||..||++++..
T Consensus        87 v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           87 VDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999999 7999999999999987653

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.79  E-value=2.1e-19  Score=137.10  Aligned_cols=121  Identities=19%  Similarity=0.271  Sum_probs=103.8

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCce
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~  220 (308)
                      +++++|.+..++.++++++++.++++.|.+++++++||++ + |+++|++|.+|++ +.+....  ...+++++|. ++.
T Consensus         4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~-~~~~~~~--~~~~v~~~m~-~~~   79 (127)
T 3nqr_A            4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDA--EAFSMDKVLR-TAV   79 (127)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGGSTTC--CCCCHHHHCB-CCC
T ss_pred             CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHhccC--CCCCHHHHcC-CCe
Confidence            4678887434589999999999999999999999999999 5 7999999999996 4433222  2568899995 488


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ++++++++.+++++|.+++.+.+||+|++|+++|+||..||++++++
T Consensus        80 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           80 VVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             EEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred             EECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999987653

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.79  E-value=1.1e-18  Score=134.81  Aligned_cols=126  Identities=25%  Similarity=0.460  Sum_probs=111.5

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~  218 (308)
                      ...+++++|.  +++.++++++++.++++.|.+++++++||++ +|+++|++|.+|++++++..+. ....++.++|.++
T Consensus         5 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~~   81 (138)
T 2yzi_A            5 MKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRN   81 (138)
T ss_dssp             TTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCS
T ss_pred             hhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-cccCCHHHHhhCC
Confidence            4456889997  7899999999999999999999999999999 8999999999999645554443 2356899999999


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHh
Q 021709          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (308)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~  269 (308)
                      +.++++++++.+++++|.+++.+++ |+|++|+++|+||..||++++....
T Consensus        82 ~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~  131 (138)
T 2yzi_A           82 LITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRL  131 (138)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCS
T ss_pred             CeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHH
Confidence            9999999999999999999999999 9998899999999999999776543

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.79  E-value=5.8e-19  Score=135.00  Aligned_cols=122  Identities=15%  Similarity=0.179  Sum_probs=105.9

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~  218 (308)
                      ..+++++|.+..++.++++++++.++++.|.+++++++||++ + ++++|++|.+|++ +....    ...+++++|. +
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~-~~~~~----~~~~v~~~m~-~   77 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLL-RYMLE----PALDIRSLVR-P   77 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGG-GGGTC----TTSCGGGGCB-C
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHH-hHhcc----CCcCHHHHhC-C
Confidence            345788887656789999999999999999999999999998 4 8999999999996 43321    2457899996 5


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                      +.++.+++++.+++++|.+++.+.+||+|++|+++|+||..||++++++.
T Consensus        78 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ge  127 (129)
T 3jtf_A           78 AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGD  127 (129)
T ss_dssp             CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHT
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence            88999999999999999999999999999889999999999999988763

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.79  E-value=1.6e-18  Score=131.54  Aligned_cols=119  Identities=22%  Similarity=0.238  Sum_probs=106.8

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeec
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECAT  223 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~  223 (308)
                      ++++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|++ +.+..+......++.++|.+++.+++
T Consensus         3 v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~-~~~~~~~~~~~~~v~~~m~~~~~~v~   79 (125)
T 1pbj_A            3 VEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTIS   79 (125)
T ss_dssp             HHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBCGGGEEC
T ss_pred             HHHhcC--CCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHH-HHHhcCCcccccCHHHHcCCCCeEEC
Confidence            567776  689999999999999999999999999999999999999999996 55555444346689999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      +++++.++++.|.+++.+++||+|+ |+++|+||..||++++.
T Consensus        80 ~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           80 PRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence            9999999999999999999999997 99999999999998764

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.79  E-value=2.7e-18  Score=133.27  Aligned_cols=121  Identities=21%  Similarity=0.352  Sum_probs=107.5

Q ss_pred             CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CC--EEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 021709          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN--KPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (308)
Q Consensus       142 ~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~--~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~  218 (308)
                      .+++++|.  +++.++++++++.++++.|.+++.+++||++ ++  +++|++|.+|++ +.+..+... ..++.++|.++
T Consensus         5 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDL-DGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHH-HHHHTTCCT-TSBSGGGCBCC
T ss_pred             eEHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHH-HHHhcCCCC-CCCHHHHcCCC
Confidence            45888997  7899999999999999999999999999999 66  899999999996 555444333 56899999999


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      +.+++++ ++.+++++|.+++.+++||+|++|+++|+||..||+++...
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence            9999999 99999999999999999999989999999999999976553

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.78  E-value=9e-19  Score=137.37  Aligned_cols=130  Identities=18%  Similarity=0.166  Sum_probs=110.7

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC-----Cccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTLVE  212 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~-----~~~~~~v~  212 (308)
                      +...+++++|.+..++.++++++++.++++.|.+++++++||++ +|+++|++|.+|++ +.+....     .....++.
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~v~   90 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMIL-DGILGLERIEFERLEEMKVE   90 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHTBCSSSBCGGGGGGCBGG
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHH-HHHHhhcccchhHHhcCCHH
Confidence            44566889997444699999999999999999999999999999 89999999999996 5443211     12356899


Q ss_pred             cccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcC
Q 021709          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (308)
Q Consensus       213 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~  271 (308)
                      ++|.+++.++++++++.+++++|.+++.  +||+|++|+++|+||..||++++......
T Consensus        91 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~~  147 (150)
T 3lqn_A           91 QVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQ  147 (150)
T ss_dssp             GTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             HHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhHh
Confidence            9999999999999999999999999986  99999999999999999999988876554

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=4.6e-19  Score=141.47  Aligned_cols=129  Identities=22%  Similarity=0.341  Sum_probs=111.6

Q ss_pred             hcCCCcccccCCC-CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709          139 MFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       139 ~~~~~v~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      +...+++++|.+. .++.++++++++.++++.|.+++.+++||++ +|+++|+||.+|+++.+..........++.++|.
T Consensus        21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~  100 (165)
T 3fhm_A           21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMT  100 (165)
T ss_dssp             SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTSB
T ss_pred             hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHHhc
Confidence            4456678888731 3699999999999999999999999999999 8899999999999755544432334678999999


Q ss_pred             cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                      +++.++.+++++.+++++|.+++.+++||+|+ |+++|+||..||++++...
T Consensus       101 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~  151 (165)
T 3fhm_A          101 KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGE  151 (165)
T ss_dssp             SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence            99999999999999999999999999999998 9999999999999876543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.78  E-value=4e-18  Score=144.88  Aligned_cols=217  Identities=18%  Similarity=0.220  Sum_probs=138.9

Q ss_pred             ccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        40 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      ..+++++|.++++++++++++.+|+++|.+++++++||+| +|+++|+++..|+++..........  ..........+.
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~--~~~~~~~~~~v~   83 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNI--LAKSATSLDNIL   83 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTH--HHHTTCCHHHHH
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhh--hhhccCCHHHHH
Confidence            5689999999999999999999999999999999999998 5999999999999877542110000  000000000000


Q ss_pred             hccCCCCCChh----HHHHHH-HHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCC---------
Q 021709          119 KHWGTSISGPN----TFIETL-RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN---------  184 (308)
Q Consensus       119 ~~~~~~~~~~~----~~~~~~-~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------  184 (308)
                      +..........    ...... ...+....+.+.+.+ ..+..+..   -.++...+.+.+.+.++++++.         
T Consensus        84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~-~~ivIvgd---r~~~~~~~i~~~~~~liit~~~~~~~~v~~~  159 (245)
T 3l2b_A           84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE-GDIAIAGD---RAEIQAELIELKVSLLIVTGGHTPSKEIIEL  159 (245)
T ss_dssp             HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCT-TCEEEECS---CHHHHHHHHHTTCSEEEECTTCCCCHHHHHH
T ss_pred             HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCC-CCEEEECC---CHHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence            00000000000    000000 000001112233332 34444432   3677888888999998887521         


Q ss_pred             ----EEEEEeeHHHHHHHHHhcCCCccccccccccc-cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhh
Q 021709          185 ----KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI  259 (308)
Q Consensus       185 ----~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~  259 (308)
                          .+..+.|..|.. .......  ...+++++|+ +++.++++++++.+++++|.+++++++||+|++|+++|+||..
T Consensus       160 a~~~~~~~i~t~~d~~-~~~~~~~--~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~  236 (245)
T 3l2b_A          160 AKKNNITVITTPHDSF-TASRLIV--QSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARF  236 (245)
T ss_dssp             HHHHTCEEEECSSCHH-HHHHHGG--GGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC
T ss_pred             HHHcCCeEEEeCCChH-HHHHHHh--cCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHH
Confidence                245677887874 3322211  2468999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 021709          260 HITHAA  265 (308)
Q Consensus       260 di~~~~  265 (308)
                      |++++.
T Consensus       237 dll~~~  242 (245)
T 3l2b_A          237 HLISTH  242 (245)
T ss_dssp             ------
T ss_pred             Hhhchh
Confidence            999753

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.78  E-value=7.8e-19  Score=138.88  Aligned_cols=128  Identities=23%  Similarity=0.374  Sum_probs=110.5

Q ss_pred             CcccccCCC----CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 021709          143 SLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN  218 (308)
Q Consensus       143 ~v~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~  218 (308)
                      +++++|.+.    +++.++++++++.+|++.|.+++++++||.++|+++|++|.+|+++.+..........++.++|.++
T Consensus         8 ~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   87 (157)
T 4fry_A            8 TVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTAK   87 (157)
T ss_dssp             BHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBSS
T ss_pred             HHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCCC
Confidence            466777633    4579999999999999999999999999976899999999999975544444443467899999999


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcC
Q 021709          219 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (308)
Q Consensus       219 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~  271 (308)
                      +.++++++++.+++++|.+++.+++||+| +|+++|+||..||++++......
T Consensus        88 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~~  139 (157)
T 4fry_A           88 VRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQF  139 (157)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCC
T ss_pred             CcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999 79999999999999988765544

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.77  E-value=3.3e-18  Score=132.06  Aligned_cols=125  Identities=27%  Similarity=0.361  Sum_probs=109.0

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH-HHHHHhcCCCccccccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI-LMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl-~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      +...+++++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|+ + +.+..... ...++.++|.
T Consensus         5 l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~-~~~~~~~~-~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMT--KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY-NLIRDKYT-LETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSB--CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHH-HHTTTCCC-SSCBHHHHSC
T ss_pred             cccCCHHHhhc--CCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHH-HHHhhccc-CCcCHHHHhC
Confidence            44567899997  6899999999999999999999999999999 8999999999999 6 44333222 2568999999


Q ss_pred             cCceeecCCCCHHHHHHHHHhCC-----CCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          217 PNPECATIDTPIVDALHIMHDGK-----FLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~-----~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      +++.++++++++.++++.|.+++     .+.+||+|++|+++|+||..||++++..
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999     9999999989999999999999987654

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.77  E-value=2.1e-18  Score=138.80  Aligned_cols=127  Identities=15%  Similarity=0.160  Sum_probs=109.6

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      +...+++++|.+.++++++++++++.++++.|.+++++++||++ + ++++|+||.+|++...... .   ..++. + .
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~-~---~~~v~-~-~  106 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE-G---RVRRN-R-L  106 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH-S---SCCGG-G-S
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC-C---cchhH-h-c
Confidence            56678999997556799999999999999999999999999998 5 7999999999997443332 2   34667 4 4


Q ss_pred             cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcC
Q 021709          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~  271 (308)
                      +++.++++++++.+++++|.+++.+.+||+|++|+++|+||..||+++++.....
T Consensus       107 ~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~d  161 (173)
T 3ocm_A          107 RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPD  161 (173)
T ss_dssp             BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCC
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCC
Confidence            7889999999999999999999999999999999999999999999988864443

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.77  E-value=2.2e-18  Score=135.14  Aligned_cols=121  Identities=20%  Similarity=0.231  Sum_probs=108.2

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~  219 (308)
                      ..++.++|.+..++.++++++++.++++.|.+++++++||++ +|+++|+||.+|++ +.+..+......++.++|.+++
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLR-RVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHH-HHHCSSSCCTTCBHHHHSEESC
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHH-HHHhcCCCcccCcHHHHcCCCC
Confidence            357899998322899999999999999999999999999999 89999999999996 6666555544678999999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHH
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH  263 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~  263 (308)
                      .++++++++.+++++|.+++.+.+||+|++ +++|+||..||++
T Consensus       106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             CEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            999999999999999999999999999965 9999999999975

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.77  E-value=5.3e-18  Score=131.79  Aligned_cols=124  Identities=15%  Similarity=0.172  Sum_probs=104.3

Q ss_pred             CCCccc---ccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC-Ccccccccccc
Q 021709          141 RPSLST---IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-PADSTLVEKVM  215 (308)
Q Consensus       141 ~~~v~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~-~~~~~~v~~~~  215 (308)
                      ..++.+   +|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|.+|++ +.+..+. .....++.++|
T Consensus         7 ~~~v~~~~~~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~v~~~m   83 (144)
T 2nyc_A            7 KIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL-GLIKGGIYNDLSLSVGEAL   83 (144)
T ss_dssp             GSBGGGSSCCBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-HHHHTC----CCSBHHHHH
T ss_pred             hcchhhcCCCCC--CCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHH-HHhcccccccCCccHHHHH
Confidence            345666   665  6899999999999999999999999999999 89999999999996 4443321 22356889988


Q ss_pred             cc------CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          216 TP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       216 ~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      .+      ++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++..
T Consensus        84 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           84 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             hcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            76      68899999999999999999999999999988999999999999997754

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.76  E-value=7.3e-19  Score=134.99  Aligned_cols=121  Identities=17%  Similarity=0.320  Sum_probs=107.3

Q ss_pred             CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCce
Q 021709          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (308)
Q Consensus       142 ~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~  220 (308)
                      .+++++|.  +++.++++++++.++++.|.+++.+++||++ +++++|++|.+|++++++..+......++.++|.+++.
T Consensus         8 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~   85 (133)
T 1y5h_A            8 TTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY   85 (133)
T ss_dssp             CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred             cCHHHHhc--CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCCE
Confidence            45778887  6789999999999999999999999999997 89999999999996345555444345689999999999


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      ++++++++.+++++|.+++.+++||+|+ |+++|+||..||++++
T Consensus        86 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           86 YVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999997 9999999999999754

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.76  E-value=1.8e-18  Score=135.60  Aligned_cols=128  Identities=27%  Similarity=0.393  Sum_probs=107.1

Q ss_pred             CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC-------------CCcc
Q 021709          142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------------LPAD  207 (308)
Q Consensus       142 ~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~-------------~~~~  207 (308)
                      .+++++|.+..++.++++++++.++++.|.+++++++||++ +++++|++|..|++ .+....             ....
T Consensus         5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~-~~~~~~~~~~~~~~~~~~~~~~~   83 (152)
T 4gqw_A            5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL-ALDSGDSTWKTFNAVQKLLSKTN   83 (152)
T ss_dssp             SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHT-TCC----CCHHHHHHHTC-----
T ss_pred             EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHH-HhhcccCcccchHHHHHHHHHhc
Confidence            45889998433799999999999999999999999999999 78999999999995 321100             1122


Q ss_pred             ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhc
Q 021709          208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (308)
Q Consensus       208 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~  270 (308)
                      ..++.++|.+++.++++++++.+++++|.+++.+++||+|++|+++|+||..||++++.....
T Consensus        84 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~  146 (152)
T 4gqw_A           84 GKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR  146 (152)
T ss_dssp             CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC---
T ss_pred             cccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhccc
Confidence            468999999999999999999999999999999999999999999999999999998775443

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.76  E-value=6.8e-18  Score=133.99  Aligned_cols=127  Identities=19%  Similarity=0.187  Sum_probs=108.9

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhc-------CCCccccccc
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-------NLPADSTLVE  212 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~-------~~~~~~~~v~  212 (308)
                      ..+++++|.  +++.++++++++.+|++.|.+++++.+||++ +|+++|+||.+|++..+...       .......++.
T Consensus         4 ~~~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~   81 (160)
T 2o16_A            4 MIKVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLF   81 (160)
T ss_dssp             CCBGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHH
T ss_pred             cCcHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHH
Confidence            346889997  6899999999999999999999999999999 89999999999996444321       1112356899


Q ss_pred             cccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhc
Q 021709          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (308)
Q Consensus       213 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~  270 (308)
                      ++|.+++.++++++++.++++.|.+++.+++||+|+ |+++|+||..||++++.....
T Consensus        82 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~~  138 (160)
T 2o16_A           82 EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLE  138 (160)
T ss_dssp             HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHHH
T ss_pred             HHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999997 999999999999998776443

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.76  E-value=1.2e-17  Score=131.99  Aligned_cols=122  Identities=21%  Similarity=0.310  Sum_probs=106.1

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcE-EEEeeCCEEEEEeeHHHHHHHHHhc--------------CCCcc
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQ--------------NLPAD  207 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~V~~~~~~~Givt~~dl~~~~~~~--------------~~~~~  207 (308)
                      +++++|.  +++.++++++++.+|++.|.+++.+. +||+++++++|++|..|++......              .....
T Consensus        17 ~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (157)
T 1o50_A           17 DVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   94 (157)
T ss_dssp             HHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             cHhhccc--CCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHc
Confidence            4788897  78999999999999999999999999 9999944999999999996443211              11223


Q ss_pred             ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       208 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ..++.++|.+ +.++++++++.+++++|.+++.+++||+|++|+++|+||..||++++..
T Consensus        95 ~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           95 AKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             SCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            5689999999 9999999999999999999999999999988999999999999987764

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.76  E-value=2.1e-18  Score=139.27  Aligned_cols=130  Identities=22%  Similarity=0.333  Sum_probs=109.9

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC------------------
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN------------------  203 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~------------------  203 (308)
                      +++++|.+..++.++++++++.++++.|.+++++++||++ +++++|+||.+|+++.....+                  
T Consensus         5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (180)
T 3sl7_A            5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKT   84 (180)
T ss_dssp             BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCS
T ss_pred             eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhh
Confidence            4678887323799999999999999999999999999999 899999999999962111000                  


Q ss_pred             --------CCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCC
Q 021709          204 --------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT  272 (308)
Q Consensus       204 --------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~  272 (308)
                              ......++.++|.+++.++++++++.+++++|.+++.+++||+|++|+++|+||..||++++.......
T Consensus        85 ~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~~~  161 (180)
T 3sl7_A           85 FNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNA  161 (180)
T ss_dssp             HHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhhhh
Confidence                    011245899999999999999999999999999999999999999999999999999999988766654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.75  E-value=2.2e-17  Score=136.41  Aligned_cols=124  Identities=15%  Similarity=0.232  Sum_probs=110.6

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHc---CCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL---RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV  214 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~  214 (308)
                      +...+++++|.  +++++++++.++.++++.|.+.   +++++||++ +++++|+||.+|++ .      .....+++++
T Consensus        51 ~~~~~v~~iM~--~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll-~------~~~~~~v~~i  121 (205)
T 3kxr_A           51 YSENEIGRYTD--HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIF-K------HEPHEPLISL  121 (205)
T ss_dssp             SCTTCGGGGCB--CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHT-T------SCTTSBGGGG
T ss_pred             CCcchHHhhcc--CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHH-h------CCCcchHHHH
Confidence            44567999998  7899999999999999999986   789999999 89999999999996 1      1235689999


Q ss_pred             cccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcC
Q 021709          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (308)
Q Consensus       215 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~  271 (308)
                      |.+++.++++++++.++++.|.+++.+.+||||++|+++|+||..||++.+......
T Consensus       122 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~e  178 (205)
T 3kxr_A          122 LSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYEA  178 (205)
T ss_dssp             CCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC-
T ss_pred             hcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988765544

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.75  E-value=1.2e-17  Score=131.88  Aligned_cols=131  Identities=15%  Similarity=0.191  Sum_probs=111.0

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC-----Cccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-----PADSTLVE  212 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~-----~~~~~~v~  212 (308)
                      +...++.++|.+..++.+++++.++.++++.|.+++++++||++ +|+++|++|.+|++ +.+....     .....++.
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~~v~   86 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMM-DAILGLERIEFERLETMKVE   86 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHH-HHSBCSSSBCGGGGGTCBGG
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHH-HHHhcccccchHHhcCCcHH
Confidence            45567899997323899999999999999999999999999999 89999999999996 5443311     12356899


Q ss_pred             cccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCC
Q 021709          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT  272 (308)
Q Consensus       213 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~  272 (308)
                      ++|.+++.++++++++.+++++|.+++.  +||+|++|+++|+||..||++++.......
T Consensus        87 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~~~  144 (157)
T 2emq_A           87 EVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLHRP  144 (157)
T ss_dssp             GTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTCCC
T ss_pred             HHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999987  999998899999999999999887765543

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.75  E-value=3.3e-17  Score=128.20  Aligned_cols=136  Identities=18%  Similarity=0.333  Sum_probs=107.1

Q ss_pred             EEEehhHHHHHHHHhccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHH
Q 021709           20 GILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYD   95 (308)
Q Consensus        20 Giit~~D~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~   95 (308)
                      |.++..+-  .++.....+...+++++|.+  +++++++++++.+|++.|.+++++++||+++  |+++|+++..|+++.
T Consensus         4 g~l~~~e~--~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~   81 (148)
T 3lv9_A            4 GLIDESEQ--RLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQ   81 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred             CccCHHHH--HHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            45554432  44455556778899999998  9999999999999999999999999999984  899999999999865


Q ss_pred             HHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCC
Q 021709           96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL  175 (308)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  175 (308)
                      ....                                        ...++.++|   .++.++++++++.++++.|.+++.
T Consensus        82 ~~~~----------------------------------------~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~  118 (148)
T 3lv9_A           82 KINE----------------------------------------NKIELEEIL---RDIIYISENLTIDKALERIRKEKL  118 (148)
T ss_dssp             HHHH----------------------------------------SCCCGGGTC---BCCEEEETTSBHHHHHHHHHHHTC
T ss_pred             HhcC----------------------------------------CCccHHHhc---CCCeEECCCCCHHHHHHHHHhcCC
Confidence            2210                                        144588888   368999999999999999999999


Q ss_pred             cEEEEee-CCEEEEEeeHHHHHHHHH
Q 021709          176 SSAVVTV-ENKPRGILTSKDILMRVI  200 (308)
Q Consensus       176 ~~~~V~~-~~~~~Givt~~dl~~~~~  200 (308)
                      +.+||++ +|+++|++|..|+++.+.
T Consensus       119 ~~l~Vvd~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A          119 QLAIVVDEYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             SEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred             eEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            9999999 799999999999985554

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.75  E-value=8.2e-18  Score=136.65  Aligned_cols=125  Identities=24%  Similarity=0.267  Sum_probs=109.3

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~  219 (308)
                      ..+++++|.  +++.++++++++.+|+++|.+++++++||++ +|+++|++|.+|++..+..........++.++|.+++
T Consensus         8 ~~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~   85 (184)
T 1pvm_A            8 FMRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   85 (184)
T ss_dssp             CCBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCC
Confidence            356889997  7899999999999999999999999999998 7999999999999643332222334568999999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      .++++++++.+++++|.+++.+.+||+|++|+++|+||..||++++..
T Consensus        86 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           86 PKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             cEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999999999999999999988999999999999975543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.75  E-value=3.2e-18  Score=135.31  Aligned_cols=119  Identities=15%  Similarity=0.216  Sum_probs=105.1

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      +...+++++|.+..++.++++++++.++++.|.+++++++||++ + ++++|++|.+|++ +.+..+   ...++.++|.
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~-~~~~~~---~~~~v~~im~  110 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLL-KYMFNP---EQFHLKSILR  110 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGG-GGSSCG---GGCCHHHHCB
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHH-HHHHcC---CcccHHHHcC
Confidence            55678999998544799999999999999999999999999998 5 5999999999996 443222   3568999996


Q ss_pred             cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHH
Q 021709          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  262 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~  262 (308)
                      + +.++++++++.++++.|.+++.+.+||+|++|+++|+||..||+
T Consensus       111 ~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          111 P-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             C-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             C-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            5 89999999999999999999999999999999999999999986

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.74  E-value=1.5e-17  Score=131.71  Aligned_cols=130  Identities=14%  Similarity=0.177  Sum_probs=109.6

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCC-----ccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-----ADSTLVE  212 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~-----~~~~~v~  212 (308)
                      +...++.++|.+..++.++++++++.++++.|.+++++++||++ +|+++|++|..|++ ..+.....     ....++.
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~-~~~~~~~~~~~~~~~~~~v~   89 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM-NSIFGLERIEFEKLDQITVE   89 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHH-HHHBCSSSBCGGGTTTSBHH
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHH-HHhhhhcccchhhhccCCHH
Confidence            34567888997223799999999999999999999999999999 78999999999996 55433211     2356899


Q ss_pred             cccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcC
Q 021709          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (308)
Q Consensus       213 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~  271 (308)
                      ++|.+++.++.+++++.+++++|.+++.  +||+|++|+++|+||..||++++......
T Consensus        90 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~  146 (159)
T 1yav_A           90 EVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRS  146 (159)
T ss_dssp             HHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             HhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHh
Confidence            9999999999999999999999999876  99999899999999999999988765544

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.73  E-value=2.5e-17  Score=133.57  Aligned_cols=133  Identities=11%  Similarity=0.164  Sum_probs=110.7

Q ss_pred             HhcCCCcccccCCCCc--eeEe--CCCCcHHHHHHHHHHcCCcEEEEe--e-CCEEEEEeeHHHHHHHHHhcC-------
Q 021709          138 RMFRPSLSTIIPEKSK--VVTI--SPTDTVLMATKKMLELRLSSAVVT--V-ENKPRGILTSKDILMRVISQN-------  203 (308)
Q Consensus       138 ~~~~~~v~~~~~~~~~--~~~v--~~~~~~~~~~~~~~~~~~~~~~V~--~-~~~~~Givt~~dl~~~~~~~~-------  203 (308)
                      .+...+++++|.+..+  +.++  .+++++.+|++.|.+++++.+||+  + +|+++|+||..|++..+....       
T Consensus         7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            3456778999984221  7788  999999999999999999999999  6 889999999999974443321       


Q ss_pred             ----------------CCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          204 ----------------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       204 ----------------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                                      ......++.++|.+++.++++++++.+++++|.+++.+++||+| +|+++|+||..||++++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                            11235689999999999999999999999999999999999999 8999999999999998876


Q ss_pred             HhcC
Q 021709          268 TVGN  271 (308)
Q Consensus       268 ~~~~  271 (308)
                      ....
T Consensus       166 ~~~~  169 (185)
T 2j9l_A          166 MANQ  169 (185)
T ss_dssp             HCC-
T ss_pred             hhcc
Confidence            6544

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.72  E-value=7.5e-17  Score=129.53  Aligned_cols=141  Identities=14%  Similarity=0.239  Sum_probs=102.7

Q ss_pred             CcEEEEEehhHHHHHHHHhccCCcccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHH
Q 021709           16 ALLCGILTDKDIATRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAK   91 (308)
Q Consensus        16 ~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~d   91 (308)
                      +.-.|.++..+-  .++.+...+...+++++|.  ++++++++++++.+|++.|.+++++++||+++  ++++|+++..|
T Consensus        19 ~~~~g~l~~~e~--~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~d   96 (172)
T 3lhh_A           19 GSSAGVIEHNEH--AMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQ   96 (172)
T ss_dssp             --------------------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHH
T ss_pred             HHHcCCCCHHHH--HHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHH
Confidence            334566665443  3344445677789999999  78899999999999999999999999999984  89999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHH
Q 021709           92 CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML  171 (308)
Q Consensus        92 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~  171 (308)
                      +++....                                        -...++.++|   +++.++++++++.++++.|.
T Consensus        97 l~~~~~~----------------------------------------~~~~~v~~im---~~~~~v~~~~~l~~a~~~m~  133 (172)
T 3lhh_A           97 LLSESIA----------------------------------------GERLELVDLV---KNCNFVPNSLSGMELLEHFR  133 (172)
T ss_dssp             HHHHHHT----------------------------------------TCCCCGGGGC---BCCEEEETTCCHHHHHHHHH
T ss_pred             HHHHHhh----------------------------------------cCcccHHHHh---cCCeEeCCCCCHHHHHHHHH
Confidence            9865210                                        0134688888   46899999999999999999


Q ss_pred             HcCCcEEEEee-CCEEEEEeeHHHHHHHHHh
Q 021709          172 ELRLSSAVVTV-ENKPRGILTSKDILMRVIS  201 (308)
Q Consensus       172 ~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~  201 (308)
                      +++.+.+||++ +|+++|+||..|++..+..
T Consensus       134 ~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          134 TTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             HHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             HcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence            99999999999 7999999999999855543

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.72  E-value=6.9e-17  Score=128.32  Aligned_cols=128  Identities=10%  Similarity=0.156  Sum_probs=108.6

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHHHHHHhcCCC----ccccccc
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLP----ADSTLVE  212 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~  212 (308)
                      ...+++++|.  +++.++++++++.++++.|.+++++++||++   +|+++|++|..|++ ..+.....    ....++.
T Consensus        11 ~~~~v~dim~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~-~~~~~~~~~~~~~~~~~v~   87 (164)
T 2pfi_A           11 HHVRVEHFMN--HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLV-QALQAEPPSRAPGHQQCLQ   87 (164)
T ss_dssp             CSCBHHHHCB--CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHH-HHHHC-------CCCCBHH
T ss_pred             cCCCHHHHcC--CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHH-HHHHhhccccCCcccchhh
Confidence            3456888997  6899999999999999999999999999998   48999999999996 44433221    1234688


Q ss_pred             cccccC------ceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcC
Q 021709          213 KVMTPN------PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGN  271 (308)
Q Consensus       213 ~~~~~~------~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~  271 (308)
                      ++|..+      +.++++++++.+++++|.+++.+++||+| +|+++|+||..||++++......
T Consensus        88 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~~~~  151 (164)
T 2pfi_A           88 DILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLTNP  151 (164)
T ss_dssp             HHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHHSC
T ss_pred             hhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhhhCC
Confidence            888766      78999999999999999999999999999 79999999999999988876654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.72  E-value=3.9e-17  Score=135.77  Aligned_cols=161  Identities=16%  Similarity=0.114  Sum_probs=103.6

Q ss_pred             ccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        40 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      ..+++++|.++++++.+++++.+|+++|.+++++++||+| +++++|+++..|+.+.                       
T Consensus        12 ~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~-----------------------   68 (213)
T 1vr9_A           12 HMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-----------------------   68 (213)
T ss_dssp             -CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS-----------------------
T ss_pred             ccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhh-----------------------
Confidence            4578999999999999999999999999999999999998 7899999999998632                       


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~  197 (308)
                                          ....++.++|.  +++.++++++++.+++++|.+++++++||++ +|+++|++|.+|++.
T Consensus        69 --------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~  126 (213)
T 1vr9_A           69 --------------------DLDSSVFNKVS--LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLE  126 (213)
T ss_dssp             --------------------CTTSBSGGGCB--CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred             --------------------cCCCcHHHHcc--CCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHH
Confidence                                11345889997  6899999999999999999999999999999 699999999999974


Q ss_pred             HHHhcCCCcccccccccccc-CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCc
Q 021709          198 RVISQNLPADSTLVEKVMTP-NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  251 (308)
Q Consensus       198 ~~~~~~~~~~~~~v~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~  251 (308)
                      .+. ....     ....+.. .+.+.....++.++.+.|.+++.+.++|++.+|.
T Consensus       127 ~~~-~~~~-----~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~  175 (213)
T 1vr9_A          127 ALI-EALA-----MDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRSG  175 (213)
T ss_dssp             HHH-HSCC-----------------------------------------------
T ss_pred             HHH-HHhc-----CCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecC
Confidence            443 2221     1111211 1111233456999999999999999999865553

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.70  E-value=2.1e-16  Score=131.43  Aligned_cols=120  Identities=17%  Similarity=0.204  Sum_probs=106.8

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~  219 (308)
                      ..++.++|.  +++.++.+++++.+++++|.+++.+.+||++ +++++|++|.+|+. ...      ...++.++|.+++
T Consensus        12 ~~~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~-~~~------~~~~v~~im~~~~   82 (213)
T 1vr9_A           12 HMKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL-DLD------LDSSVFNKVSLPD   82 (213)
T ss_dssp             -CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGT-TSC------TTSBSGGGCBCTT
T ss_pred             ccCHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHH-hhc------CCCcHHHHccCCC
Confidence            345778887  7899999999999999999999999999999 89999999999995 221      1458999999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHh
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~  269 (308)
                      .++++++++.+++++|.+++++++||+|++|+++|+||..||++++....
T Consensus        83 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~  132 (213)
T 1vr9_A           83 FFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  132 (213)
T ss_dssp             CCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             EEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh
Confidence            99999999999999999999999999998899999999999999776533

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.70  E-value=1.8e-16  Score=119.55  Aligned_cols=116  Identities=22%  Similarity=0.357  Sum_probs=102.6

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      ++++++|.+++.++++++++.+|++.|.+++++.+||++ +|+++|+++..++++....                     
T Consensus         1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~---------------------   59 (122)
T 3kpb_A            1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ---------------------   59 (122)
T ss_dssp             CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT---------------------
T ss_pred             CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh---------------------
Confidence            368899999999999999999999999999999999998 7999999999999765221                     


Q ss_pred             ccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHH
Q 021709          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (308)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~  198 (308)
                                          ...++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|..|++ +
T Consensus        60 --------------------~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~-~  116 (122)
T 3kpb_A           60 --------------------NKKTIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS-R  116 (122)
T ss_dssp             --------------------TCCBGGGTSB--SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHH-H
T ss_pred             --------------------cccCHHHHhc--CCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHH-H
Confidence                                1236888887  6889999999999999999999999999999 69999999999997 4


Q ss_pred             HH
Q 021709          199 VI  200 (308)
Q Consensus       199 ~~  200 (308)
                      .+
T Consensus       117 ~l  118 (122)
T 3kpb_A          117 LF  118 (122)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.70  E-value=2.9e-16  Score=118.87  Aligned_cols=119  Identities=19%  Similarity=0.239  Sum_probs=102.7

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhcc
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (308)
                      +++++|.+++.++++++++.+|++.|.+++.+.+||+|+|+++|+++..|+++.....                      
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~----------------------   59 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG----------------------   59 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT----------------------
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcC----------------------
Confidence            5789999999999999999999999999999999999999999999999997542210                      


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHH
Q 021709          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV  199 (308)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~  199 (308)
                                     ......++.++|.  +++.++++++++.++++.|.+++.+.+||+++|+++|++|..|++..+
T Consensus        60 ---------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           60 ---------------DDLAEVKVWEVME--RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAK  120 (125)
T ss_dssp             ---------------CCTTTSBHHHHCB--CGGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             ---------------CcccccCHHHHcC--CCCeEECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHH
Confidence                           0012345778887  689999999999999999999999999999989999999999997433

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.70  E-value=2.6e-16  Score=120.63  Aligned_cols=122  Identities=15%  Similarity=0.186  Sum_probs=105.4

Q ss_pred             cccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        39 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      .+.+++++|.+++.++++++++.+|++.|.+++++.+||+++|+++|+++..++++.....                   
T Consensus         2 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~-------------------   62 (133)
T 2ef7_A            2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKG-------------------   62 (133)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTT-------------------
T ss_pred             CcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhcC-------------------
Confidence            3568999999999999999999999999999999999999999999999999997542100                   


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~  197 (308)
                                         .....++.++|.  +++.++++++++.++++.|.+++.+.+||++ +|+++|++|..|++.
T Consensus        63 -------------------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~  121 (133)
T 2ef7_A           63 -------------------KSLETKAEEFMT--ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITR  121 (133)
T ss_dssp             -------------------CCTTCBGGGTSE--ECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             -------------------CCcccCHHHHcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHH
Confidence                               012356888887  6889999999999999999999999999999 899999999999974


Q ss_pred             HHH
Q 021709          198 RVI  200 (308)
Q Consensus       198 ~~~  200 (308)
                      .+.
T Consensus       122 ~~~  124 (133)
T 2ef7_A          122 AID  124 (133)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=2.6e-16  Score=125.39  Aligned_cols=126  Identities=17%  Similarity=0.162  Sum_probs=108.1

Q ss_pred             cCCccccccccccc---CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHH
Q 021709           36 LNLEETPVSKVMTR---NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIA  111 (308)
Q Consensus        36 ~~~~~~~v~~im~~---~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~  111 (308)
                      ......+++++|.+   +++++.+++++.+|++.|.+++++.+||++ +|+++|+++..|+++......           
T Consensus        19 ~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-----------   87 (165)
T 3fhm_A           19 FQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG-----------   87 (165)
T ss_dssp             CSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG-----------
T ss_pred             HhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC-----------
Confidence            35566789999985   699999999999999999999999999998 689999999999986633210           


Q ss_pred             HHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEee
Q 021709          112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILT  191 (308)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt  191 (308)
                                               ......++.++|.  +++.++.+++++.++++.|.+++.+++||+++|+++|+||
T Consensus        88 -------------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit  140 (165)
T 3fhm_A           88 -------------------------AASLQQSVSVAMT--KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIIS  140 (165)
T ss_dssp             -------------------------GGGGTSBGGGTSB--SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEE
T ss_pred             -------------------------CccccCCHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEE
Confidence                                     0123456889997  7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 021709          192 SKDILMRV  199 (308)
Q Consensus       192 ~~dl~~~~  199 (308)
                      ..|++..+
T Consensus       141 ~~dil~~~  148 (165)
T 3fhm_A          141 IGDVVKAR  148 (165)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99997443

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.69  E-value=1.8e-16  Score=120.85  Aligned_cols=120  Identities=11%  Similarity=0.158  Sum_probs=104.1

Q ss_pred             cccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        39 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      ...+++++|.+++.++++++++.+|++.|.+++++.+||+++|+++|+++..|+++....                    
T Consensus         3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~--------------------   62 (128)
T 3gby_A            3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKG--------------------   62 (128)
T ss_dssp             TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSS--------------------
T ss_pred             cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhh--------------------
Confidence            467899999999999999999999999999999999999999999999999999743100                    


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~  197 (308)
                           .             .....++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|..|+++
T Consensus        63 -----~-------------~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~  122 (128)
T 3gby_A           63 -----W-------------PTVKEKLGEELL--ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILG  122 (128)
T ss_dssp             -----S-------------CCTTCBCCGGGC--BCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHH
T ss_pred             -----C-------------CcccCcHHHHcc--CCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHH
Confidence                 0             001245888887  7889999999999999999999999999998 899999999999973


Q ss_pred             H
Q 021709          198 R  198 (308)
Q Consensus       198 ~  198 (308)
                      .
T Consensus       123 ~  123 (128)
T 3gby_A          123 F  123 (128)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.69  E-value=1.4e-16  Score=121.79  Aligned_cols=121  Identities=18%  Similarity=0.194  Sum_probs=100.0

Q ss_pred             Cccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021709           38 LEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (308)
Q Consensus        38 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~  113 (308)
                      +.+.+++++|.+  .++++++++++.+|++.|.+++++++||++ + |+++|+++..|+++.....              
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------------   68 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSG--------------   68 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTT--------------
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcC--------------
Confidence            456789999984  567999999999999999999999999998 4 8999999999998652210              


Q ss_pred             hhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeH
Q 021709          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (308)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~  192 (308)
                                               ....++.++|.   ++.++++++++.++++.|.+++.+.+||++ +|+++|++|.
T Consensus        69 -------------------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~  120 (130)
T 3i8n_A           69 -------------------------SGQKQLGAVMR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTL  120 (130)
T ss_dssp             -------------------------TTTSBHHHHSE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEH
T ss_pred             -------------------------CCcCCHHHHhc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEH
Confidence                                     11345777774   488999999999999999999999999998 7999999999


Q ss_pred             HHHHHHHH
Q 021709          193 KDILMRVI  200 (308)
Q Consensus       193 ~dl~~~~~  200 (308)
                      .|+++.+.
T Consensus       121 ~dil~~l~  128 (130)
T 3i8n_A          121 EDIFEHLV  128 (130)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99985543

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.68  E-value=1.3e-16  Score=121.86  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=100.9

Q ss_pred             cccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021709           39 EETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (308)
Q Consensus        39 ~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~  114 (308)
                      .+.+++++|.  ++++++++++++.+|++.|.+++++++||+++  ++++|+++..|+++...                 
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----------------   65 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----------------   65 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----------------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----------------
Confidence            4568999998  67899999999999999999999999999984  89999999999874310                 


Q ss_pred             hhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHH
Q 021709          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (308)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~  193 (308)
                                              ....++.++|.   ++.++++++++.++++.|.+++.+.+||++ +|+++|++|..
T Consensus        66 ------------------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~  118 (129)
T 3jtf_A           66 ------------------------EPALDIRSLVR---PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTME  118 (129)
T ss_dssp             ------------------------CTTSCGGGGCB---CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHH
T ss_pred             ------------------------cCCcCHHHHhC---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHH
Confidence                                    01345788885   488999999999999999999999999999 69999999999


Q ss_pred             HHHHHHH
Q 021709          194 DILMRVI  200 (308)
Q Consensus       194 dl~~~~~  200 (308)
                      |+++.+.
T Consensus       119 Dil~~l~  125 (129)
T 3jtf_A          119 DVLEQIV  125 (129)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9985554

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.68  E-value=4.8e-16  Score=123.25  Aligned_cols=129  Identities=20%  Similarity=0.312  Sum_probs=106.0

Q ss_pred             ccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        40 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      ..+++++|.++++++.+++++.+|+++|.+++++.+||+| +|+++|+++..|+++..........              
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~--------------   69 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSA--------------   69 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC-----------------
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccc--------------
Confidence            4689999999999999999999999999999999999998 6899999999999876432110000              


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~  198 (308)
                                     .........++.++|.  +++.++++++++.++++.|.+++.+.+||+++|+++|+||..|++..
T Consensus        70 ---------------~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~  132 (160)
T 2o16_A           70 ---------------QGDSLAFETPLFEVMH--TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTI  132 (160)
T ss_dssp             ---------------------CCCBHHHHSC--SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHH
T ss_pred             ---------------cccchhcccCHHHHhc--CCCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHH
Confidence                           0001123456888887  68999999999999999999999999999999999999999999744


Q ss_pred             H
Q 021709          199 V  199 (308)
Q Consensus       199 ~  199 (308)
                      +
T Consensus       133 ~  133 (160)
T 2o16_A          133 A  133 (160)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.68  E-value=2.5e-16  Score=124.39  Aligned_cols=123  Identities=20%  Similarity=0.223  Sum_probs=101.9

Q ss_pred             cccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709           41 TPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (308)
Q Consensus        41 ~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (308)
                      .+++++|.  .+++++.++.++.+|+.+|.+++++++||+| +|+++|+++..|+++.......                
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~----------------   78 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL----------------   78 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC----------------
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc----------------
Confidence            47889997  4789999999999999999999999999998 5999999999999876432100                


Q ss_pred             hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                       ........++.++|.  +++.++++++++.++++.|.+++  .+||++ +|+++|+||.+|++
T Consensus        79 -----------------~~~~~~~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil  137 (156)
T 3k6e_A           79 -----------------SQEIMADTDIVHMTK--TDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSIL  137 (156)
T ss_dssp             -----------------CHHHHTTSBGGGTCB--CSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHH
T ss_pred             -----------------ccccccccCHHHhhc--CCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHH
Confidence                             011234567899998  78999999999999999998765  499998 89999999999998


Q ss_pred             HHHH
Q 021709          197 MRVI  200 (308)
Q Consensus       197 ~~~~  200 (308)
                      +.+.
T Consensus       138 ~~~~  141 (156)
T 3k6e_A          138 KAVN  141 (156)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5553

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.68  E-value=5.7e-16  Score=119.06  Aligned_cols=120  Identities=16%  Similarity=0.208  Sum_probs=103.5

Q ss_pred             ccccccc---cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        42 ~v~~im~---~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      +++++|.   ++++++++++++.+|++.|.+++++.+||+++|+++|+++..|+++.....                   
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~-------------------   67 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL-------------------   67 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS-------------------
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHc-------------------
Confidence            7899998   899999999999999999999999999999999999999999997532110                   


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~  198 (308)
                         +              ......++.++|.  +++.++++++++.++++.|.+++.+.+||+++|+++|++|..|++..
T Consensus        68 ---~--------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~  128 (135)
T 2rc3_A           68 ---D--------------KPVKDTQVKEIMT--RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKD  128 (135)
T ss_dssp             ---S--------------SCGGGSBGGGTSB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ---C--------------CCcccCCHHHhcc--CCCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHH
Confidence               0              0022456888997  68999999999999999999999999999998999999999999744


Q ss_pred             H
Q 021709          199 V  199 (308)
Q Consensus       199 ~  199 (308)
                      +
T Consensus       129 ~  129 (135)
T 2rc3_A          129 A  129 (135)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.68  E-value=4.8e-16  Score=122.69  Aligned_cols=137  Identities=17%  Similarity=0.232  Sum_probs=105.4

Q ss_pred             cccccccc------cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021709           41 TPVSKVMT------RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (308)
Q Consensus        41 ~~v~~im~------~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~  114 (308)
                      .+++++|.      ++++++++++++.+|++.|.+++++.+||.++|+++|+++..|+++......              
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~--------------   72 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQE--------------   72 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGT--------------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhcc--------------
Confidence            36888888      4569999999999999999999999999987899999999999986522100              


Q ss_pred             hhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHH
Q 021709          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKD  194 (308)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~d  194 (308)
                                            ......++.++|.  +++.++++++++.++++.|.+++++++||+++|+++|++|..|
T Consensus        73 ----------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~d  128 (157)
T 4fry_A           73 ----------------------RSSKATRVEEIMT--AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGD  128 (157)
T ss_dssp             ----------------------CCSSSCBHHHHSB--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHH
T ss_pred             ----------------------CCccccCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHH
Confidence                                  0012456788887  6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccccccccc
Q 021709          195 ILMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       195 l~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      ++..+... .......+..++.
T Consensus       129 il~~l~~~-~~~~~~~~~~~i~  149 (157)
T 4fry_A          129 LVKSVIAD-QQFTISQLEHYIH  149 (157)
T ss_dssp             HHHHHHTT-CCCCCC-------
T ss_pred             HHHHHHHH-HHhhHHHHHhhcc
Confidence            97544433 3322334455544

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.68  E-value=3.4e-16  Score=135.90  Aligned_cols=122  Identities=20%  Similarity=0.294  Sum_probs=109.1

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHc-----CCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~  213 (308)
                      ...+++++|.  ++++++++++++.++++.|.++     +++++||++ +|+++|+||.+|++.      . ....++.+
T Consensus       135 ~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~------~-~~~~~v~~  205 (286)
T 2oux_A          135 EDETAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIV------N-DDDTLIAD  205 (286)
T ss_dssp             CTTBHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTT------S-CTTSBHHH
T ss_pred             ChHHHHHhCC--CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHc------C-CCCCcHHH
Confidence            3457889998  7899999999999999999987     788899999 899999999999962      1 22568999


Q ss_pred             ccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhc
Q 021709          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (308)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~  270 (308)
                      +|.+++.++++++++.+++++|.+++.+++||+|++|+++|+||..||++.+.....
T Consensus       206 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~~  262 (286)
T 2oux_A          206 ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEAA  262 (286)
T ss_dssp             HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHHH
T ss_pred             HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999999999998775543

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.67  E-value=9.4e-16  Score=123.19  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=110.6

Q ss_pred             CcEEEEEehhHHHHHHHHhccCCcccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHH
Q 021709           16 ALLCGILTDKDIATRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAK   91 (308)
Q Consensus        16 ~~~~Giit~~D~~~~~~~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~d   91 (308)
                      +.--|.++..+-  .++.+...+...+++++|.  ++++++++++++.+|++.|.++++.++||++ + ++++|+++..|
T Consensus        13 ~~~~g~l~~~e~--~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~D   90 (173)
T 3ocm_A           13 MPAVPAFGVEER--NMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKD   90 (173)
T ss_dssp             -----CCCHHHH--HHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHH
T ss_pred             HHhcCCcCHHHH--HHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHH
Confidence            344588886654  3444444566789999997  4689999999999999999999999999997 4 79999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHH
Q 021709           92 CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML  171 (308)
Q Consensus        92 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~  171 (308)
                      ++......                                        ...++. ++   .++.++++++++.++++.|.
T Consensus        91 l~~~~~~~----------------------------------------~~~~v~-~~---~~~~~v~~~~~l~~al~~m~  126 (173)
T 3ocm_A           91 LVADLITE----------------------------------------GRVRRN-RL---RDPIIVHESIGILRLMDTLK  126 (173)
T ss_dssp             HHHHHHHH----------------------------------------SSCCGG-GS---BCCCEECGGGCHHHHHHHHH
T ss_pred             HHHHHhcC----------------------------------------CcchhH-hc---CCCeEECCCCcHHHHHHHHH
Confidence            98652210                                        123455 33   56899999999999999999


Q ss_pred             HcCCcEEEEee-CCEEEEEeeHHHHHHHHHh
Q 021709          172 ELRLSSAVVTV-ENKPRGILTSKDILMRVIS  201 (308)
Q Consensus       172 ~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~  201 (308)
                      +++.+.+||++ +|+++|+||..|++..+..
T Consensus       127 ~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          127 RSRGQLVLVADEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             HSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred             HcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence            99999999998 8999999999999865553

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.67  E-value=2.9e-16  Score=123.49  Aligned_cols=120  Identities=21%  Similarity=0.291  Sum_probs=104.1

Q ss_pred             Cccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEe-e--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHH
Q 021709           38 LEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAA  112 (308)
Q Consensus        38 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVv-d--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~  112 (308)
                      +.+.+++++|.+  +++++++++++.+|++.|.+++++++||+ +  +|+++|+++..|+++.....             
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~-------------   83 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID-------------   83 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH-------------
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC-------------
Confidence            456789999986  89999999999999999999999999999 5  38999999999998653211             


Q ss_pred             HhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEee
Q 021709          113 AVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT  191 (308)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt  191 (308)
                                                 ...++.++|   +++.++++++++.++++.|.+++.+.+||++ +|+++|+||
T Consensus        84 ---------------------------~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt  133 (153)
T 3oco_A           84 ---------------------------DKAKISTIM---RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIIT  133 (153)
T ss_dssp             ---------------------------TTSBGGGTC---BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEEC
T ss_pred             ---------------------------CCCcHHHHh---CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEee
Confidence                                       134578888   3689999999999999999999999999999 799999999


Q ss_pred             HHHHHHHHH
Q 021709          192 SKDILMRVI  200 (308)
Q Consensus       192 ~~dl~~~~~  200 (308)
                      ..|++..+.
T Consensus       134 ~~dil~~l~  142 (153)
T 3oco_A          134 DKDVYEELF  142 (153)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999985554

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=1.2e-15  Score=120.53  Aligned_cols=140  Identities=16%  Similarity=0.199  Sum_probs=108.5

Q ss_pred             ccCCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcE-eeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021709           35 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRH-LPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (308)
Q Consensus        35 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~-~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~  113 (308)
                      +......+++++|.++++++.+++++.+|++.|.+++++. +||+|+++++|+++..|+++.....+             
T Consensus        10 ~~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~-------------   76 (157)
T 1o50_A           10 HHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF-------------   76 (157)
T ss_dssp             CTTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH-------------
T ss_pred             hhhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhH-------------
Confidence            3456677899999999999999999999999999999999 99999559999999999987543211             


Q ss_pred             hhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeH
Q 021709          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (308)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~  192 (308)
                          ....    .....+.. ........++.++|.  + +.++++++++.++++.|.+++.+++||++ +|+++|+||.
T Consensus        77 ----~~~~----~~~~~~~~-~~~~~~~~~v~~im~--~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~  144 (157)
T 1o50_A           77 ----FGFI----PKEELIRS-SMKRLIAKNASEIML--D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNS  144 (157)
T ss_dssp             ----HCCC----C--------CCCCCSSCBHHHHCB--C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             ----Hhhh----ccHHHHHH-HHHHHcCCcHHHHcC--C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEH
Confidence                0000    00000000 000123456788897  6 99999999999999999999999999999 8999999999


Q ss_pred             HHHHHHH
Q 021709          193 KDILMRV  199 (308)
Q Consensus       193 ~dl~~~~  199 (308)
                      .|+++.+
T Consensus       145 ~dll~~l  151 (157)
T 1o50_A          145 LEILLAL  151 (157)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9997444

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.67  E-value=7e-17  Score=122.95  Aligned_cols=118  Identities=17%  Similarity=0.190  Sum_probs=99.8

Q ss_pred             ccccccccccC--ceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        40 ~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      +.+++++|.+.  ++++++++++.+|++.|.+++++++||+++  |+++|+++..|+++....                 
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-----------------   64 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence            45789999955  999999999999999999999999999984  799999999998753110                 


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHH
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (308)
                                            .....++.++|.   ++.++++++++.++++.|.+++.+++||++ +|+++|++|..|
T Consensus        65 ----------------------~~~~~~v~~~m~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~d  119 (127)
T 3nqr_A           65 ----------------------DAEAFSMDKVLR---TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIED  119 (127)
T ss_dssp             ----------------------TCCCCCHHHHCB---CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ----------------------cCCCCCHHHHcC---CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                  012345777885   378899999999999999999999999999 899999999999


Q ss_pred             HHHHH
Q 021709          195 ILMRV  199 (308)
Q Consensus       195 l~~~~  199 (308)
                      +++.+
T Consensus       120 ll~~l  124 (127)
T 3nqr_A          120 ILELI  124 (127)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            97543

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.67  E-value=1.4e-15  Score=120.36  Aligned_cols=125  Identities=15%  Similarity=0.248  Sum_probs=105.3

Q ss_pred             CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      +...+++++|.+ ++++.+++++.+|++.|.+++++.+||++ +|+++|+++..|+++.....                 
T Consensus        14 l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------   75 (159)
T 3fv6_A           14 LKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQ-----------------   75 (159)
T ss_dssp             HTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSC-----------------
T ss_pred             HhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhcc-----------------
Confidence            456799999987 56999999999999999999999999998 79999999999998652210                 


Q ss_pred             hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CC---EEEEEeeH
Q 021709          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN---KPRGILTS  192 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~---~~~Givt~  192 (308)
                                          ......++.++|.+..++.++.+++++.++++.|.+++++++||++ +|   +++|+||.
T Consensus        76 --------------------~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~  135 (159)
T 3fv6_A           76 --------------------QELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTK  135 (159)
T ss_dssp             --------------------SCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEH
T ss_pred             --------------------CcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEH
Confidence                                0123456889997323889999999999999999999999999999 66   99999999


Q ss_pred             HHHHHHHH
Q 021709          193 KDILMRVI  200 (308)
Q Consensus       193 ~dl~~~~~  200 (308)
                      .|++..+.
T Consensus       136 ~dil~~l~  143 (159)
T 3fv6_A          136 TNMTKILV  143 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99975544

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.66  E-value=7.3e-16  Score=117.84  Aligned_cols=120  Identities=9%  Similarity=0.149  Sum_probs=98.2

Q ss_pred             cccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           41 TPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        41 ~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      .+++++|.  ++++++++++++.+|++.|.+++++++||+++  |+++|+++..|+++.....                 
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~-----------------   64 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK-----------------   64 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS-----------------
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc-----------------
Confidence            57899996  46899999999999999999999999999963  8999999999998652210                 


Q ss_pred             hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl  195 (308)
                            .     .         ....++.++|   .++.++++++++.++++.|.+++.+.+||++ +|+++|++|..|+
T Consensus        65 ------~-----~---------~~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Di  121 (130)
T 3hf7_A           65 ------K-----E---------FTKEIMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDI  121 (130)
T ss_dssp             ------S-----C---------CCHHHHHHHS---BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHH
T ss_pred             ------C-----c---------cchhhHHHhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHH
Confidence                  0     0         0001245556   3578999999999999999999999999998 8999999999999


Q ss_pred             HHHHH
Q 021709          196 LMRVI  200 (308)
Q Consensus       196 ~~~~~  200 (308)
                      ++.+.
T Consensus       122 l~~l~  126 (130)
T 3hf7_A          122 LEEIV  126 (130)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            85544

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.66  E-value=7.8e-16  Score=133.16  Aligned_cols=120  Identities=22%  Similarity=0.292  Sum_probs=106.9

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHc-----CCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccc
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE  212 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~  212 (308)
                      +...+++++|.  +++++++++.++.++++.|.+.     +++++||++ +++++|+||.+|++ ..      ....++.
T Consensus       132 ~~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll-~~------~~~~~v~  202 (278)
T 2yvy_A          132 YEEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-VA------DPRTRVA  202 (278)
T ss_dssp             SCTTBGGGTCB--SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHH-HS------CTTCBST
T ss_pred             CCcchHHhhcC--CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHh-cC------CCCCcHH
Confidence            34567899998  6899999999999999999987     789999999 89999999999996 21      1256899


Q ss_pred             cccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       213 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ++|.+++.++++++++.+++++|.+++.+.+||+|++|+++|+||..||++.+..
T Consensus       203 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          203 EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             TTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             HHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.66  E-value=1e-15  Score=126.32  Aligned_cols=120  Identities=11%  Similarity=0.049  Sum_probs=105.8

Q ss_pred             cCCcccccccccccCceEEeCCCcHHHHHHHhHhC---CCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHH
Q 021709           36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG---KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIA  111 (308)
Q Consensus        36 ~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~---~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~  111 (308)
                      ..+.+.+++++|.+++++++++.++.+|++.|.++   +++.+||++ +++++|+++.++++..                
T Consensus        49 l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----------------  112 (205)
T 3kxr_A           49 DQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH----------------  112 (205)
T ss_dssp             HHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS----------------
T ss_pred             hCCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC----------------
Confidence            34566789999999999999999999999999987   889999998 6999999999998632                


Q ss_pred             HHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEe
Q 021709          112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL  190 (308)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Giv  190 (308)
                                                 ....++.++|.  +++.++++++++.++++.|.+++.+++||+| +|+++|+|
T Consensus       113 ---------------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiI  163 (205)
T 3kxr_A          113 ---------------------------EPHEPLISLLS--EDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRV  163 (205)
T ss_dssp             ---------------------------CTTSBGGGGCC--SSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEE
T ss_pred             ---------------------------CCcchHHHHhc--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEE
Confidence                                       12346889997  6899999999999999999999999999999 89999999


Q ss_pred             eHHHHHHHHH
Q 021709          191 TSKDILMRVI  200 (308)
Q Consensus       191 t~~dl~~~~~  200 (308)
                      |..|++..+.
T Consensus       164 T~~Dil~~i~  173 (205)
T 3kxr_A          164 TLRAATALVR  173 (205)
T ss_dssp             EHHHHHHHHH
T ss_pred             EHHHHHHHHH
Confidence            9999985544

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.66  E-value=1.7e-15  Score=117.29  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=101.2

Q ss_pred             ccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC-C--eEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-G--EVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        40 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~--~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      ..+++++|.++++++++++++.+|++.|.+++++.+||+++ +  +++|+++..|+++.....                 
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~-----------------   66 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR-----------------   66 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT-----------------
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC-----------------
Confidence            35799999999999999999999999999999999999995 5  899999999997642210                 


Q ss_pred             hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl  195 (308)
                                           .....++.++|.  +++.+++++ ++.++++.|.+++.+++||++ +|+++|++|..|+
T Consensus        67 ---------------------~~~~~~v~~~m~--~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dl  122 (141)
T 2rih_A           67 ---------------------LDLDGPAMPIAN--SPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDL  122 (141)
T ss_dssp             ---------------------CCTTSBSGGGCB--CCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             ---------------------CCCCCCHHHHcC--CCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHH
Confidence                                 012346888987  689999999 999999999999999999999 8999999999999


Q ss_pred             H
Q 021709          196 L  196 (308)
Q Consensus       196 ~  196 (308)
                      +
T Consensus       123 l  123 (141)
T 2rih_A          123 C  123 (141)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.66  E-value=7.1e-16  Score=130.67  Aligned_cols=125  Identities=15%  Similarity=0.105  Sum_probs=103.6

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC---CEEEEEeeHHHHHHHHHhc----CC---C----
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQ----NL---P----  205 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~Givt~~dl~~~~~~~----~~---~----  205 (308)
                      ...+++++|.  ++++++.+++++.++.++|.+++++.+||+++   ++++|+||++|++..+...    ..   .    
T Consensus        11 ~~~~v~diMt--~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~   88 (250)
T 2d4z_A           11 YNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA   88 (250)
T ss_dssp             SSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred             CCCChHHhcC--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            3456899998  78999999999999999999999999999983   5899999999997433211    00   0    


Q ss_pred             -----------------c--------------------------------------------------------------
Q 021709          206 -----------------A--------------------------------------------------------------  206 (308)
Q Consensus       206 -----------------~--------------------------------------------------------------  206 (308)
                                       .                                                              
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
T 2d4z_A           89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE  168 (250)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence                             0                                                              


Q ss_pred             ---------------ccccc--c-cccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          207 ---------------DSTLV--E-KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       207 ---------------~~~~v--~-~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                                     ...++  . .+|++.|.++.++++|.++..+|...+++++||++ .|+++||||++||++++..
T Consensus       169 ~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          169 EMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             SCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             cccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                           01122  2 36889999999999999999999999999999997 6999999999999998764

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.66  E-value=4e-15  Score=114.65  Aligned_cols=123  Identities=21%  Similarity=0.243  Sum_probs=105.2

Q ss_pred             CCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        37 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      .+...+++++|.++++++++++++.+|++.|.+++++.+||++ +|+++|+++..|+++..+..                
T Consensus         3 ~l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------   66 (138)
T 2yzi_A            3 MDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP----------------   66 (138)
T ss_dssp             CCTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT----------------
T ss_pred             chhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhc----------------
Confidence            3456789999999999999999999999999999999999998 79999999999997431100                


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHH
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (308)
                                           ......++.++|.  +++.++++++++.++++.|.+++.+++ |++ +|+++|++|..|
T Consensus        67 ---------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~d  122 (138)
T 2yzi_A           67 ---------------------GLPYDIPVERIMT--RNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSD  122 (138)
T ss_dssp             ---------------------CCCTTSBGGGTCB--CSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHH
T ss_pred             ---------------------CCcccCCHHHHhh--CCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHH
Confidence                                 0012456888997  689999999999999999999999999 998 999999999999


Q ss_pred             HHHHH
Q 021709          195 ILMRV  199 (308)
Q Consensus       195 l~~~~  199 (308)
                      ++..+
T Consensus       123 il~~~  127 (138)
T 2yzi_A          123 LLEAS  127 (138)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97444

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.65  E-value=1.4e-15  Score=119.06  Aligned_cols=117  Identities=14%  Similarity=0.172  Sum_probs=101.6

Q ss_pred             ccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709           41 TPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (308)
Q Consensus        41 ~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (308)
                      .+++++|.+  +++++++++++.+|++.|.+++++.+||++ +|+++|+++..|+++.....                  
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~------------------   89 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTG------------------   89 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSS------------------
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcC------------------
Confidence            589999998  999999999999999999999999999998 68999999999997542100                  


Q ss_pred             hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                           .              .....++.++|.  +++.++++++++.++++.|.+++.+.+||+++++++|+||..|++
T Consensus        90 -----~--------------~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil  147 (149)
T 3k2v_A           90 -----V--------------DMRDASIADVMT--RGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLL  147 (149)
T ss_dssp             -----S--------------CCTTCBHHHHSE--ESCCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHT
T ss_pred             -----C--------------CcccCcHHHHcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhh
Confidence                 0              012445778887  678999999999999999999999999999966999999999985

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.65  E-value=1.5e-15  Score=120.58  Aligned_cols=131  Identities=17%  Similarity=0.178  Sum_probs=102.4

Q ss_pred             CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee---CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021709           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (308)
Q Consensus        38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~  114 (308)
                      ....+++++|.++++++++++++.+|++.|.+++++++||+|   +|+++|+++..|+++.........           
T Consensus        10 ~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~-----------   78 (164)
T 2pfi_A           10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR-----------   78 (164)
T ss_dssp             CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC----------------
T ss_pred             ccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc-----------
Confidence            456789999999999999999999999999999999999998   489999999999976532110000           


Q ss_pred             hhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCC----CceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEe
Q 021709          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL  190 (308)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Giv  190 (308)
                                            ......++.++|...    ..+.++++++++.++++.|.+++.+++||+++|+++|+|
T Consensus        79 ----------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Gii  136 (164)
T 2pfi_A           79 ----------------------APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCV  136 (164)
T ss_dssp             ------------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEEE
T ss_pred             ----------------------CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEE
Confidence                                  000122344444310    117889999999999999999999999999999999999


Q ss_pred             eHHHHHHHHHh
Q 021709          191 TSKDILMRVIS  201 (308)
Q Consensus       191 t~~dl~~~~~~  201 (308)
                      |..|++..+..
T Consensus       137 t~~dil~~~~~  147 (164)
T 2pfi_A          137 SWVEMKKAISN  147 (164)
T ss_dssp             EHHHHHHHHHH
T ss_pred             EHHHHHHHHHh
Confidence            99999855443

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.65  E-value=2.9e-16  Score=121.00  Aligned_cols=118  Identities=13%  Similarity=0.166  Sum_probs=100.5

Q ss_pred             ccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           40 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        40 ~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      +.+++++|.  ++++++++++++.+|++.|.+++++++||+++  ++++|+++..|+++....                 
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK-----------------   64 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS-----------------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh-----------------
Confidence            457899998  67899999999999999999999999999984  799999999998754110                 


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHH
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (308)
                                           ......++.++|.  + +.++++++++.+++++|.+++.+.+||++ +|+++|++|.+|
T Consensus        65 ---------------------~~~~~~~v~~~m~--~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~D  120 (136)
T 3lfr_A           65 ---------------------ADGDSDDVKKLLR--P-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIED  120 (136)
T ss_dssp             ---------------------SSGGGCCGGGTCB--C-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ---------------------ccCCCcCHHHHcC--C-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                 0012346888885  3 89999999999999999999999999998 899999999999


Q ss_pred             HHHH
Q 021709          195 ILMR  198 (308)
Q Consensus       195 l~~~  198 (308)
                      +++.
T Consensus       121 il~~  124 (136)
T 3lfr_A          121 VLEQ  124 (136)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            9743

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.64  E-value=8.2e-16  Score=118.51  Aligned_cols=122  Identities=26%  Similarity=0.358  Sum_probs=103.5

Q ss_pred             CcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHH-HHHHHHHHHHHHHhHHHHHHHhh
Q 021709           38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKC-LYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        38 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dl-l~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      +.+.+++++|.+++.++.+++++.+|++.|.+++++.+||++ +|+++|+++..++ ++....                 
T Consensus         5 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------   67 (138)
T 2p9m_A            5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRD-----------------   67 (138)
T ss_dssp             CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTT-----------------
T ss_pred             cccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhh-----------------
Confidence            346789999999999999999999999999999999999998 6999999999998 653110                 


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcC-----CcEEEEee-CCEEEEE
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGI  189 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~V~~-~~~~~Gi  189 (308)
                                           ......++.++|.  +++.++++++++.++++.|.+++     .+.+||++ +|+++|+
T Consensus        68 ---------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Gi  124 (138)
T 2p9m_A           68 ---------------------KYTLETTIGDVMT--KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGI  124 (138)
T ss_dssp             ---------------------CCCSSCBHHHHSC--SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEE
T ss_pred             ---------------------cccCCcCHHHHhC--CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEE
Confidence                                 0022445778887  67899999999999999999999     99999999 8999999


Q ss_pred             eeHHHHHHHH
Q 021709          190 LTSKDILMRV  199 (308)
Q Consensus       190 vt~~dl~~~~  199 (308)
                      +|..|+++.+
T Consensus       125 it~~dll~~~  134 (138)
T 2p9m_A          125 ISDGDIIRTI  134 (138)
T ss_dssp             EEHHHHHHHH
T ss_pred             EEHHHHHHHH
Confidence            9999997443

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.64  E-value=1e-14  Score=123.54  Aligned_cols=161  Identities=15%  Similarity=0.112  Sum_probs=109.3

Q ss_pred             CCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC---CeEEEEEeHHHHHHHHHHHHHHHHH--------
Q 021709           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIARMERAAE--------  105 (308)
Q Consensus        37 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~~vGivs~~dll~~~~~~~~~~~~--------  105 (308)
                      ...+..++++|.++++++.+++++.+|.++|.+++++++||+++   ++++|+|+..|+++.+.........        
T Consensus         9 ~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~   88 (250)
T 2d4z_A            9 NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA   88 (250)
T ss_dssp             CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred             ccCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            34567899999999999999999999999999999999999984   5899999999998765433210000        


Q ss_pred             ---------------hHHHHHHHhhh------hhhc--------------c---------------------------CC
Q 021709          106 ---------------KGKAIAAAVEG------VEKH--------------W---------------------------GT  123 (308)
Q Consensus       106 ---------------~~~~~~~~~~~------~~~~--------------~---------------------------~~  123 (308)
                                     ...........      ++..              .                           ..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
T 2d4z_A           89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE  168 (250)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence                           00000000000      0000              0                           00


Q ss_pred             CCCChhHHHHHHHHHhcCCCc--c-cccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHH
Q 021709          124 SISGPNTFIETLRERMFRPSL--S-TIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI  200 (308)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~v--~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~  200 (308)
                      ....+......... ....++  . .+|.  ..++++.+++++.++..+|.+.+++++||++.|+++|+||+.|++ +++
T Consensus       169 ~~i~~~~~~~~~~~-~l~~~Vdl~~~~md--~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~-kai  244 (250)
T 2d4z_A          169 EMLTLEEIYRWEQR-EKNVVVNFETCRID--QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQ-AAI  244 (250)
T ss_dssp             SCCBHHHHHHHHHH-HTTCBCCTTSSCEE--CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHH
T ss_pred             cccChhhhhhHHHH-hcCceecccccccc--CCCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHH-HHH
Confidence            00111111111112 233344  3 3576  789999999999999999999999999999999999999999996 554


Q ss_pred             h
Q 021709          201 S  201 (308)
Q Consensus       201 ~  201 (308)
                      .
T Consensus       245 ~  245 (250)
T 2d4z_A          245 E  245 (250)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.64  E-value=1.4e-15  Score=119.01  Aligned_cols=127  Identities=17%  Similarity=0.197  Sum_probs=104.0

Q ss_pred             Ccccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021709           38 LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (308)
Q Consensus        38 ~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~  114 (308)
                      +...+++++|.  ++++++.+++++.+|++.|.+++++.+||+| +|+++|+++..|+++.....               
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~---------------   76 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGL---------------   76 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCS---------------
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhh---------------
Confidence            45678999998  4599999999999999999999999999998 79999999999998652200               


Q ss_pred             hhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHH
Q 021709          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK  193 (308)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~  193 (308)
                              .. ..        .......++.++|.  +++.++++++++.++++.|.++++  +||++ +|+++|+||..
T Consensus        77 --------~~-~~--------~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~  135 (150)
T 3lqn_A           77 --------ER-IE--------FERLEEMKVEQVMK--QDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRR  135 (150)
T ss_dssp             --------SS-BC--------GGGGGGCBGGGTCB--SSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHH
T ss_pred             --------cc-cc--------hhHHhcCCHHHHhc--CCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHH
Confidence                    00 00        01123456889997  789999999999999999999886  99999 89999999999


Q ss_pred             HHHHHHH
Q 021709          194 DILMRVI  200 (308)
Q Consensus       194 dl~~~~~  200 (308)
                      |+++.+.
T Consensus       136 dil~~l~  142 (150)
T 3lqn_A          136 AILKLLN  142 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9974443

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.64  E-value=1.6e-15  Score=118.73  Aligned_cols=132  Identities=17%  Similarity=0.220  Sum_probs=103.9

Q ss_pred             cccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        40 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      ..+++++|.+  +++++++++++.+|++.|.+++++.+||++ +++++|+++..|+++.......               
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~---------------   68 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDST---------------   68 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----C---------------
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCc---------------
Confidence            4689999988  899999999999999999999999999998 5899999999999753211000               


Q ss_pred             hhhccCCCCCChhHHHHH---HHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeH
Q 021709          117 VEKHWGTSISGPNTFIET---LRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~  192 (308)
                                  ......   ........++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|+||.
T Consensus        69 ------------~~~~~~~~~~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~  134 (152)
T 4gqw_A           69 ------------WKTFNAVQKLLSKTNGKLVGDLMT--PAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITR  134 (152)
T ss_dssp             ------------CHHHHHHHTC-----CCBHHHHSE--ESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEH
T ss_pred             ------------ccchHHHHHHHHHhccccHHHhcC--CCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEH
Confidence                        000000   001123456888887  6788999999999999999999999999999 8999999999


Q ss_pred             HHHHHHHH
Q 021709          193 KDILMRVI  200 (308)
Q Consensus       193 ~dl~~~~~  200 (308)
                      +|+++.+.
T Consensus       135 ~dil~~~~  142 (152)
T 4gqw_A          135 GNVVRAAL  142 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99985444

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.63  E-value=3.6e-16  Score=123.42  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=101.4

Q ss_pred             ccCCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHHHhHHHH
Q 021709           35 ELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAI  110 (308)
Q Consensus        35 ~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~~vGivs~~dll~~~~~~~~~~~~~~~~~  110 (308)
                      ...+...+++++|.+  +++++++++++.+|++.|.+++++++||+++  ++++|+++..|+++....            
T Consensus        32 ~~~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~------------   99 (156)
T 3oi8_A           32 VLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN------------   99 (156)
T ss_dssp             HHHHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC------------
T ss_pred             HhccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc------------
Confidence            334567899999986  7899999999999999999999999999984  599999999998743110            


Q ss_pred             HHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEE
Q 021709          111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI  189 (308)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Gi  189 (308)
                                                  -...++.++|.   ++.++++++++.++++.|.+++.+.+||++ +|+++|+
T Consensus       100 ----------------------------~~~~~v~~im~---~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Gi  148 (156)
T 3oi8_A          100 ----------------------------PEQFHLKSILR---PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGL  148 (156)
T ss_dssp             ----------------------------GGGCCHHHHCB---CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEE
T ss_pred             ----------------------------CCcccHHHHcC---CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEE
Confidence                                        02345777885   388999999999999999999999999998 8999999


Q ss_pred             eeHHHHH
Q 021709          190 LTSKDIL  196 (308)
Q Consensus       190 vt~~dl~  196 (308)
                      +|..|++
T Consensus       149 vt~~Dil  155 (156)
T 3oi8_A          149 VTFEDII  155 (156)
T ss_dssp             EEHHHHC
T ss_pred             EEHHHhc
Confidence            9999984

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.63  E-value=2.5e-15  Score=116.56  Aligned_cols=127  Identities=18%  Similarity=0.272  Sum_probs=100.5

Q ss_pred             Cccccccc---ccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021709           38 LEETPVSK---VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (308)
Q Consensus        38 ~~~~~v~~---im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~  113 (308)
                      ..+.++++   +|.++++++.+++++.+|++.|.+++++.+||++ +|+++|+++..|+++......             
T Consensus         5 ~~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------   71 (144)
T 2nyc_A            5 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI-------------   71 (144)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC--------------
T ss_pred             hhhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccc-------------
Confidence            34557777   7888999999999999999999999999999998 689999999999976522100             


Q ss_pred             hhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCC----CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEE
Q 021709          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG  188 (308)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~G  188 (308)
                                             ......++.++|.+.    .++.++++++++.++++.|.+++.+.+||++ +|+++|
T Consensus        72 -----------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~G  128 (144)
T 2nyc_A           72 -----------------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVG  128 (144)
T ss_dssp             --------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred             -----------------------cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEE
Confidence                                   001123455555421    1689999999999999999999999999999 899999


Q ss_pred             EeeHHHHHHHHH
Q 021709          189 ILTSKDILMRVI  200 (308)
Q Consensus       189 ivt~~dl~~~~~  200 (308)
                      ++|..|+++.+.
T Consensus       129 iit~~dil~~l~  140 (144)
T 2nyc_A          129 VLTLSDILKYIL  140 (144)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999975543

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.62  E-value=6.2e-15  Score=116.17  Aligned_cols=128  Identities=13%  Similarity=0.218  Sum_probs=103.2

Q ss_pred             CCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021709           37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (308)
Q Consensus        37 ~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~  113 (308)
                      .+...+++++|.+  +++++.+++++.+|++.|.+++++.+||++ +|+++|+++..++++.....              
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~--------------   72 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGL--------------   72 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCS--------------
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcc--------------
Confidence            3556789999986  899999999999999999999999999998 69999999999997541100              


Q ss_pred             hhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeH
Q 021709          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (308)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~  192 (308)
                               ..    ..     .......++.++|.  +++.++++++++.++++.|.++++  +||++ +|+++|+||.
T Consensus        73 ---------~~----~~-----~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~  130 (157)
T 2emq_A           73 ---------ER----IE-----FERLETMKVEEVMN--RNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTR  130 (157)
T ss_dssp             ---------SS----BC-----GGGGGTCBGGGTCB--CCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEH
T ss_pred             ---------cc----cc-----hHHhcCCcHHHHhC--CCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEH
Confidence                     00    00     01123456889997  689999999999999999999877  99999 7999999999


Q ss_pred             HHHHHHHH
Q 021709          193 KDILMRVI  200 (308)
Q Consensus       193 ~dl~~~~~  200 (308)
                      +|++..+.
T Consensus       131 ~dil~~~~  138 (157)
T 2emq_A          131 REVLKQLN  138 (157)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99975444

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.61  E-value=1.4e-15  Score=122.67  Aligned_cols=150  Identities=17%  Similarity=0.204  Sum_probs=107.6

Q ss_pred             cccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        40 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      ..+++++|.+  +++++.+++++.+|+++|.+++++.+||++ +|+++|+++..|+++............         .
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~---------~   73 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDT---------N   73 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC---------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcc---------c
Confidence            3578999988  899999999999999999999999999998 689999999999975321110000000         0


Q ss_pred             hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl  195 (308)
                      +....+..... ..............++.++|.  +++.++++++++.++++.|.+++++++||++ +|+++|+||.+|+
T Consensus        74 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~di  150 (180)
T 3sl7_A           74 LFPDVDSTWKT-FNELQKLISKTYGKVVGDLMT--PSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNV  150 (180)
T ss_dssp             -------CCCS-HHHHHHHHHTTTTCBHHHHSE--ESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHH
T ss_pred             ccccccchhhh-hHHHHHHHhccccccHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHH
Confidence            00000001111 111111222234567889997  6789999999999999999999999999999 8999999999999


Q ss_pred             HHHHHh
Q 021709          196 LMRVIS  201 (308)
Q Consensus       196 ~~~~~~  201 (308)
                      ++.+..
T Consensus       151 l~~~~~  156 (180)
T 3sl7_A          151 VRAALQ  156 (180)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            855543

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.61  E-value=2.6e-15  Score=114.98  Aligned_cols=118  Identities=18%  Similarity=0.207  Sum_probs=100.8

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      .+++++|.+++.++++++++.+|++.|.+++++.+||+| +|+++|+++..|+++..+..                    
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~--------------------   67 (133)
T 1y5h_A            8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA--------------------   67 (133)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG--------------------
T ss_pred             cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc--------------------
Confidence            488999999999999999999999999999999999997 79999999999987321100                    


Q ss_pred             ccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHH
Q 021709          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL  196 (308)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~  196 (308)
                        +.              .....++.++|.  +++.++++++++.++++.|.+++.+++||+++|+++|++|..|++
T Consensus        68 --~~--------------~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil  126 (133)
T 1y5h_A           68 --GL--------------DPNTATAGELAR--DSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA  126 (133)
T ss_dssp             --TC--------------CTTTSBHHHHHT--TCCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             --CC--------------CccccCHHHHhc--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHH
Confidence              00              012345777886  688999999999999999999999999999989999999999997

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.60  E-value=8.5e-15  Score=118.55  Aligned_cols=147  Identities=16%  Similarity=0.158  Sum_probs=106.1

Q ss_pred             cccccccccccC----ceEE--eCCCcHHHHHHHhHhCCCcEeeEe--e-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHH
Q 021709           39 EETPVSKVMTRN----PTFV--LSDTLAVEALQKMVQGKFRHLPVV--E-NGEVIALLDIAKCLYDAIARMERAAEKGKA  109 (308)
Q Consensus        39 ~~~~v~~im~~~----~~~v--~~~~~l~~a~~~m~~~~~~~~pVv--d-~~~~vGivs~~dll~~~~~~~~~~~~~~~~  109 (308)
                      ...+++++|.+.    ++++  .+++++.+|+++|.+++++.+||+  + +|+++|+++..|+++........    .. 
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~----~~-   83 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKK----QD-   83 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTS----CS-
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhccc----CC-
Confidence            467899999876    7888  999999999999999999999999  5 68999999999998654321000    00 


Q ss_pred             HHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEE
Q 021709          110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGI  189 (308)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Gi  189 (308)
                        ....+........ ....     ........++.++|.  +++.++++++++.++++.|.+++.+++||+++|+++|+
T Consensus        84 --~~~~~~~~~~~~~-~~~~-----~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGi  153 (185)
T 2j9l_A           84 --GVVSTSIIYFTEH-SPPL-----PPYTPPTLKLRNILD--LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGI  153 (185)
T ss_dssp             --CCCTTCEEECSSS-CCCC-----CTTCCCCEECGGGEE--SSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEE
T ss_pred             --CccccceeecccC-Cccc-----ccccccCccHHHhhC--cCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEE
Confidence              0000000000000 0000     000012345788887  68999999999999999999999999999999999999


Q ss_pred             eeHHHHHHHHH
Q 021709          190 LTSKDILMRVI  200 (308)
Q Consensus       190 vt~~dl~~~~~  200 (308)
                      ||..|+++.+.
T Consensus       154 it~~dll~~l~  164 (185)
T 2j9l_A          154 ITKKDVLKHIA  164 (185)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EEHHHHHHHHH
Confidence            99999975544

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.60  E-value=1.3e-14  Score=117.63  Aligned_cols=119  Identities=20%  Similarity=0.199  Sum_probs=103.1

Q ss_pred             ccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        40 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      ..+++++|.++++++.+++++.+|+++|.+++++.+||++ +|+++|+++..|+++.....                   
T Consensus         8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~-------------------   68 (184)
T 1pvm_A            8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR-------------------   68 (184)
T ss_dssp             CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG-------------------
T ss_pred             ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc-------------------
Confidence            4689999999999999999999999999999999999998 68999999999997642100                   


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                       .......++.++|.  +++.++++++++.++++.|.+++.+.+||++ +|+++|+||..|++
T Consensus        69 -----------------~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll  128 (184)
T 1pvm_A           69 -----------------NKKPDEVPIRLVMR--KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS  128 (184)
T ss_dssp             -----------------CCCGGGSBGGGTSB--SSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHT
T ss_pred             -----------------ccCcccCCHHHHhC--CCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHH
Confidence                             00012346888997  6889999999999999999999999999999 69999999999996

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.59  E-value=4.8e-15  Score=139.25  Aligned_cols=124  Identities=11%  Similarity=0.096  Sum_probs=108.1

Q ss_pred             CCCcccccCCCCceeEeCCC-CcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 021709          141 RPSLSTIIPEKSKVVTISPT-DTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~  217 (308)
                      ..++.++|.  ++++++.++ +++.+++++|.+++++++||++  +++++|+||.+|+++.+..... ....++.++|.+
T Consensus       383 ~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~-~~~~~V~~im~~  459 (527)
T 3pc3_A          383 SLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNR-QQSDPAIKALNK  459 (527)
T ss_dssp             TSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCC-CTTSBGGGGEET
T ss_pred             CCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccC-cCCCcHHHHhcC
Confidence            456899998  789999999 9999999999999999999998  7899999999999755554333 336689999999


Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEECCC----CcEEEEEEhhHHHHHHHHHh
Q 021709          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRD----GDVVDVVDVIHITHAAVATV  269 (308)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~----~~~iGiit~~di~~~~~~~~  269 (308)
                      ++.++++++++.+++++|.++++  +||+|++    |+++||||+.||++++....
T Consensus       460 ~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          460 RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            99999999999999999977665  7999974    99999999999999877544

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.59  E-value=6.1e-15  Score=116.59  Aligned_cols=128  Identities=15%  Similarity=0.215  Sum_probs=103.5

Q ss_pred             CCccccccccccc--CceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021709           37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (308)
Q Consensus        37 ~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~  113 (308)
                      .+...+++++|.+  +++++.+++++.+|++.|.+++++.+||+| +|+++|+++..|++......              
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~--------------   75 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL--------------   75 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS--------------
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhh--------------
Confidence            4566799999988  899999999999999999999999999998 68999999999997542100              


Q ss_pred             hhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeH
Q 021709          114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS  192 (308)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~  192 (308)
                               ... .        .......++.++|.  +++.++++++++.++++.|.++++  +||++ +|+++|+||.
T Consensus        76 ---------~~~-~--------~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~  133 (159)
T 1yav_A           76 ---------ERI-E--------FEKLDQITVEEVML--TDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTR  133 (159)
T ss_dssp             ---------SSB-C--------GGGTTTSBHHHHSB--CSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEH
T ss_pred             ---------ccc-c--------hhhhccCCHHHhcC--CCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEH
Confidence                     000 0        00123456788887  689999999999999999998876  99999 8999999999


Q ss_pred             HHHHHHHH
Q 021709          193 KDILMRVI  200 (308)
Q Consensus       193 ~dl~~~~~  200 (308)
                      +|++..+.
T Consensus       134 ~dil~~~~  141 (159)
T 1yav_A          134 RVVLKELN  141 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99974443

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.58  E-value=1.3e-14  Score=134.19  Aligned_cols=120  Identities=22%  Similarity=0.300  Sum_probs=107.8

Q ss_pred             cCCCcccccCCCCceeEeCCCCcHHHHHHHHHHc-----CCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 021709          140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK  213 (308)
Q Consensus       140 ~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~  213 (308)
                      ...+++++|.  +++++++++.++.++++.|.+.     +++++||+| +++++|++|.+|++..       ....++++
T Consensus       153 ~~~~v~~iM~--~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~-------~~~~~v~d  223 (473)
T 2zy9_A          153 EEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------DPRTRVAE  223 (473)
T ss_dssp             CTTBSTTTCB--SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS-------CTTSBGGG
T ss_pred             CCCCHHHhCC--CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC-------CCCCcHHH
Confidence            4567899998  7899999999999999999986     478999999 8899999999999621       12568999


Q ss_pred             ccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       214 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                      +|++++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+...
T Consensus       224 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          224 IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987653

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.56  E-value=1.7e-14  Score=125.16  Aligned_cols=120  Identities=14%  Similarity=0.232  Sum_probs=105.3

Q ss_pred             cCCcccccccccccCceEEeCCCcHHHHHHHhHhC-----CCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHH
Q 021709           36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKA  109 (308)
Q Consensus        36 ~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~-----~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~  109 (308)
                      ......+++++|.++++++++++++.+|++.|.++     +++.+||++ +|+++|+++..+++..              
T Consensus       132 l~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~--------------  197 (286)
T 2oux_A          132 LHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN--------------  197 (286)
T ss_dssp             TTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------------
T ss_pred             hcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC--------------
Confidence            35667799999999999999999999999999987     788999998 6999999999998632              


Q ss_pred             HHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEE
Q 021709          110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG  188 (308)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~G  188 (308)
                                                   ....++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|
T Consensus       198 -----------------------------~~~~~v~~im~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvG  246 (286)
T 2oux_A          198 -----------------------------DDDTLIADILN--ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLG  246 (286)
T ss_dssp             -----------------------------CTTSBHHHHSB--SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEE
T ss_pred             -----------------------------CCCCcHHHHcC--CCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEE
Confidence                                         12345778887  6799999999999999999999999999999 899999


Q ss_pred             EeeHHHHHHHHH
Q 021709          189 ILTSKDILMRVI  200 (308)
Q Consensus       189 ivt~~dl~~~~~  200 (308)
                      +||..|++..+.
T Consensus       247 iIT~~Dil~~i~  258 (286)
T 2oux_A          247 IVTVDDIIDVID  258 (286)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999975443

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.55  E-value=4.1e-14  Score=122.34  Aligned_cols=118  Identities=20%  Similarity=0.236  Sum_probs=104.2

Q ss_pred             CCcccccccccccCceEEeCCCcHHHHHHHhHhC-----CCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHH
Q 021709           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAI  110 (308)
Q Consensus        37 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~-----~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~  110 (308)
                      .....+++++|.++++++++++++.+|++.|.++     ++..+||++ +++++|+++..+++..               
T Consensus       131 ~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~---------------  195 (278)
T 2yvy_A          131 RYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------  195 (278)
T ss_dssp             HSCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS---------------
T ss_pred             CCCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC---------------
Confidence            3456789999999999999999999999999987     789999998 6999999999998632               


Q ss_pred             HHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEE
Q 021709          111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI  189 (308)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Gi  189 (308)
                                                  ....++.++|.  ++++++++++++.++++.|.+++.+.+||++ +|+++|+
T Consensus       196 ----------------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGi  245 (278)
T 2yvy_A          196 ----------------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGI  245 (278)
T ss_dssp             ----------------------------CTTCBSTTTSB--SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             ----------------------------CCCCcHHHHhC--CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEE
Confidence                                        12346889997  6899999999999999999999999999999 8999999


Q ss_pred             eeHHHHHHHH
Q 021709          190 LTSKDILMRV  199 (308)
Q Consensus       190 vt~~dl~~~~  199 (308)
                      ||..|++..+
T Consensus       246 vT~~Dil~~i  255 (278)
T 2yvy_A          246 VTVDDVLDVL  255 (278)
T ss_dssp             EEHHHHHHHC
T ss_pred             EEHHHHHHHH
Confidence            9999997443

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.55  E-value=2.3e-15  Score=144.09  Aligned_cols=122  Identities=11%  Similarity=0.013  Sum_probs=102.6

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHH-HcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCC-------------
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKML-ELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-------------  205 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~-------------  205 (308)
                      ..+++++|.+++++.++++++++.++.+.|. +++++.+||+| +++++|+||.+|++ +.+.....             
T Consensus       452 ~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~-~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          452 EMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIV-DRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHT-TTTTTC---------------
T ss_pred             cCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHH-HHHHHHhhhccccccccccee
Confidence            3467899987778999999999999999999 79999999999 89999999999996 43322110             


Q ss_pred             ----------------------------------ccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCc
Q 021709          206 ----------------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD  251 (308)
Q Consensus       206 ----------------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~  251 (308)
                                                        ....+++++|+++|.++++++++.++.++|.+++.+++||+ ++|+
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~  609 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGK  609 (632)
T ss_dssp             ----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTE
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCE
Confidence                                              00013778999999999999999999999999999999999 6899


Q ss_pred             EEEEEEhhHHHHH
Q 021709          252 VVDVVDVIHITHA  264 (308)
Q Consensus       252 ~iGiit~~di~~~  264 (308)
                      ++|+||++||+++
T Consensus       610 lvGIVT~~Dll~~  622 (632)
T 3org_A          610 LVGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEEGGGTEEC
T ss_pred             EEEEEehhhHHHH
Confidence            9999999999864

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.51  E-value=8.8e-14  Score=129.49  Aligned_cols=116  Identities=25%  Similarity=0.300  Sum_probs=103.7

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc-Cc
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NP  219 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~-~~  219 (308)
                      ..+.|.  .++.+++++.++.+++++|.+++++.+||++   +++++|+||.+|+. .     ......++.++|.+ ++
T Consensus       115 ~~~~m~--~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~-~-----~~~~~~~V~~vM~~~~~  186 (511)
T 3usb_A          115 SESGVI--SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMR-F-----IQDYSIKISDVMTKEQL  186 (511)
T ss_dssp             SSSCSS--SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHT-T-----CCCSSSBHHHHCCCCCC
T ss_pred             cccccc--cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhh-h-----hccCCCcHHHhcccCCC
Confidence            445665  6899999999999999999999999999998   57999999999994 2     22235689999998 99


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      .++++++++.+++++|.+++.+.+||||++|+++|+||.+||++.+..
T Consensus       187 vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          187 ITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             CCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            999999999999999999999999999999999999999999997754

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.48  E-value=9.8e-15  Score=135.43  Aligned_cols=114  Identities=17%  Similarity=0.183  Sum_probs=89.9

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc-c-Cce
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P-NPE  220 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~-~-~~~  220 (308)
                      ..++|.  .+++++++++++.+++++|.+++++.+||++ +++++|+||.+|+.      .......++.++|. . ++.
T Consensus        91 ~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~------~~~~~~~~v~diM~p~~~~v  162 (496)
T 4fxs_A           91 FEAGVV--THPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR------FVTDLTKSVAAVMTPKERLA  162 (496)
T ss_dssp             CCC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT------TCCCTTSBGGGTSEEGGGCC
T ss_pred             cccccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh------hcccCCCcHHHHhcCCCCCE
Confidence            567777  7899999999999999999999999999999 89999999999994      12233568999998 4 589


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      ++++++++.+++++|.+++.+.+||||++|+++|+||.+||+++.
T Consensus       163 tv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          163 TVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             EEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence            999999999999999999999999999999999999999999864

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.47  E-value=6.1e-14  Score=131.74  Aligned_cols=122  Identities=12%  Similarity=0.204  Sum_probs=103.1

Q ss_pred             CcccccccccccCceEEeCC-CcHHHHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021709           38 LEETPVSKVMTRNPTFVLSD-TLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV  114 (308)
Q Consensus        38 ~~~~~v~~im~~~~~~v~~~-~~l~~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~  114 (308)
                      +...+++++|.++++++.++ +++.+|+++|.+++++++||+|  +++++|+|+..|+++.....               
T Consensus       381 l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~---------------  445 (527)
T 3pc3_A          381 WWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM---------------  445 (527)
T ss_dssp             TTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH---------------
T ss_pred             ccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc---------------
Confidence            33578999999999999999 9999999999999999999998  68999999999998764321               


Q ss_pred             hhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC-----CEEEEE
Q 021709          115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-----NKPRGI  189 (308)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~Gi  189 (308)
                                            ......++.++|.  +++.++++++++.+++++|.++++  +||+++     |+++|+
T Consensus       446 ----------------------~~~~~~~V~~im~--~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGI  499 (527)
T 3pc3_A          446 ----------------------NRQQSDPAIKALN--KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKAL  499 (527)
T ss_dssp             ----------------------CCCTTSBGGGGEE--TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEE
T ss_pred             ----------------------cCcCCCcHHHHhc--CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEE
Confidence                                  0122456899998  789999999999999999976554  789884     899999


Q ss_pred             eeHHHHHHHHH
Q 021709          190 LTSKDILMRVI  200 (308)
Q Consensus       190 vt~~dl~~~~~  200 (308)
                      ||..|+++.+.
T Consensus       500 VT~~Dll~~l~  510 (527)
T 3pc3_A          500 ATKLDVTTFIA  510 (527)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EEHHHHHHHHH
Confidence            99999985544

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.45  E-value=5.1e-13  Score=123.61  Aligned_cols=120  Identities=20%  Similarity=0.221  Sum_probs=105.2

Q ss_pred             cCCcccccccccccCceEEeCCCcHHHHHHHhHhC-----CCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHH
Q 021709           36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKA  109 (308)
Q Consensus        36 ~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~-----~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~  109 (308)
                      ....+.+++++|.++++++++++++.+|++.|.++     ++.++||+| +++++|+++.+|++..              
T Consensus       150 l~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~--------------  215 (473)
T 2zy9_A          150 ARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------  215 (473)
T ss_dssp             HTSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS--------------
T ss_pred             hcCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC--------------
Confidence            34556789999999999999999999999999986     589999998 6899999999998732              


Q ss_pred             HHHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEE
Q 021709          110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG  188 (308)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~G  188 (308)
                                                   ....++.++|.  +++.++++++++.++++.|.+++.+.+||+| +|+++|
T Consensus       216 -----------------------------~~~~~v~dim~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvG  264 (473)
T 2zy9_A          216 -----------------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVG  264 (473)
T ss_dssp             -----------------------------CTTSBGGGTSB--SSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred             -----------------------------CCCCcHHHHhC--CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEE
Confidence                                         12346899997  6899999999999999999999999999999 899999


Q ss_pred             EeeHHHHHHHHH
Q 021709          189 ILTSKDILMRVI  200 (308)
Q Consensus       189 ivt~~dl~~~~~  200 (308)
                      +||..|++..+.
T Consensus       265 iIT~~Dil~~i~  276 (473)
T 2zy9_A          265 IVTVDDVLDVLE  276 (473)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEehHhhHHHHH
Confidence            999999985443

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.44  E-value=1.1e-12  Score=122.28  Aligned_cols=116  Identities=21%  Similarity=0.296  Sum_probs=104.1

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc-Cc
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NP  219 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~-~~  219 (308)
                      +.++|.  .++.+++++.++.++++.|.+++++.+||++   +++++|+||.+|++ ..     .....++.++|.+ ++
T Consensus        92 ~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~-~~-----~~~~~~v~~im~~~~~  163 (491)
T 1zfj_A           92 SENGVI--IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR-FI-----SDYNAPISEHMTSEHL  163 (491)
T ss_dssp             HTTTTS--SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHH-HC-----SCSSSBTTTSCCCSCC
T ss_pred             HHhcCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHh-hh-----ccCCCcHHHHcCCCCC
Confidence            366787  6899999999999999999999999999997   68999999999995 32     1235689999998 89


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      .++++++++.++++.|.+++.+.+||+|++|+++|+||..||++.+..
T Consensus       164 ~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          164 VTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             CCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999997764

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.43  E-value=5.9e-15  Score=134.25  Aligned_cols=137  Identities=20%  Similarity=0.208  Sum_probs=10.0

Q ss_pred             cCCCCCChhHHHHHHHHHhcC-CCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee----CCEEEEEeeHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFR-PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDI  195 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~----~~~~~Givt~~dl  195 (308)
                      -|..++|.+...+.......+ ...+..|.  .+++++.|+.++.+++++|.+++++.+||++    +++++|+||.+|+
T Consensus       116 GGiGvIH~n~sie~Qa~~V~~VKr~e~g~i--~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~  193 (556)
T 4af0_A          116 GGLGIIHHNCSAEEQAAMVRRVKKYENGFI--TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV  193 (556)
T ss_dssp             TCEEEECCSSCHHHHHHHHHHHHHCCC-----------------------------------------------------
T ss_pred             CCeEEEcCCCCHHHHHHHHHHHHhcccCcc--CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccc
Confidence            366666665433333221111 11233343  5799999999999999999999999999998    3689999999999


Q ss_pred             HHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          196 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       196 ~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      . .     .+ ...+++++|++++.+++...+++++.++|.++++..+||||++|+++|+||.+|+.+...
T Consensus       194 r-f-----~d-~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          194 Q-F-----QD-AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             c-c-----cc-cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence            3 2     12 256899999999999999999999999999999999999999999999999999998553

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.42  E-value=7.5e-15  Score=136.81  Aligned_cols=115  Identities=22%  Similarity=0.199  Sum_probs=0.8

Q ss_pred             cCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-C---CEEEEEeeHHHHHHHHHhcCCCccccccccccccC--cee
Q 021709          148 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PEC  221 (308)
Q Consensus       148 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~---~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~--~~~  221 (308)
                      |.  ++++++++++++.+++++|.+++++.+||++ +   ++++|+||.+|++ ..    ......++.++|.++  +.+
T Consensus       103 M~--~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~-~~----~~~~~~~V~diM~~~~~~~t  175 (503)
T 1me8_A          103 FV--VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYP-ID----LTQTETKVSDMMTPFSKLVT  175 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc--cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHH-hh----hccccCcHHHHhCCCCCCEE
Confidence            66  6899999999999999999999999999999 5   8999999999995 32    122356899999987  999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHh
Q 021709          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (308)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~  269 (308)
                      +++++++.+++++|.+++.+.+||+|++|+++|+||.+||++++....
T Consensus       176 v~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~  223 (503)
T 1me8_A          176 AHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHN  223 (503)
T ss_dssp             ----------------------------------------------CC
T ss_pred             EcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhccc
Confidence            999999999999999999999999999999999999999999876443

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.42  E-value=1.4e-13  Score=131.78  Aligned_cols=156  Identities=13%  Similarity=0.092  Sum_probs=102.2

Q ss_pred             cccccccccc--cCceEEeCCCcHHHHHHHhH-hCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHH---
Q 021709           39 EETPVSKVMT--RNPTFVLSDTLAVEALQKMV-QGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIA---  111 (308)
Q Consensus        39 ~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~-~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~---  111 (308)
                      .+.+++++|.  ++++++++++++.++.+.|. +++++++||+| +++++|+++.+|+.+..........+......   
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            5678999999  89999999999999999999 79999999998 68999999999998653321110000000000   


Q ss_pred             -HHhhhhhhccCCCC-CChh----HHHHHHHHH-hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCC
Q 021709          112 -AAVEGVEKHWGTSI-SGPN----TFIETLRER-MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN  184 (308)
Q Consensus       112 -~~~~~~~~~~~~~~-~~~~----~~~~~~~~~-~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~  184 (308)
                       .......+...... ..+.    ..-+..... ....++.++|+  +++.++++++++.++.+.|.+++.+++||+++|
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt--~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~G  608 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCD--VSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERG  608 (632)
T ss_dssp             ----------------------------------------CCSCC--CCCCEEETTCBHHHHHHHHHHTCCSEEEEEETT
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhc--CCCceecCCCcHHHHHHHHHhcCCCEEEEEECC
Confidence             00000000000000 0000    000000000 01124788998  789999999999999999999999999999999


Q ss_pred             EEEEEeeHHHHH
Q 021709          185 KPRGILTSKDIL  196 (308)
Q Consensus       185 ~~~Givt~~dl~  196 (308)
                      +++|+||.+|++
T Consensus       609 ~lvGIVT~~Dll  620 (632)
T 3org_A          609 KLVGIVEREDVA  620 (632)
T ss_dssp             EEEEEEEGGGTE
T ss_pred             EEEEEEehhhHH
Confidence            999999999996

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.41  E-value=1.8e-14  Score=133.55  Aligned_cols=115  Identities=22%  Similarity=0.250  Sum_probs=1.9

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccc-c-Ccee
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P-NPEC  221 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~-~-~~~~  221 (308)
                      +.++|.  .++.+++++.++.+++++|.+++++.+||+++++++|+||.+|+. ..     .....++.++|. + ++.+
T Consensus        90 ~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~-~~-----~~~~~~V~~vMtp~~~~vt  161 (490)
T 4avf_A           90 HETAIV--RDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLR-VK-----PNAGDTVAAIMTPKDKLVT  161 (490)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             cccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhh-hc-----cccCCcHHHHhccCCCCEE
Confidence            567776  678999999999999999999999999999988999999999994 22     122568999998 4 6999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      +++++++.+++++|.+++.+.+||+|++|+++|+||++||+++..
T Consensus       162 v~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          162 AREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ---------------------------------------------
T ss_pred             ECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence            999999999999999999999999999999999999999998654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.41  E-value=2.1e-12  Score=109.32  Aligned_cols=167  Identities=17%  Similarity=0.187  Sum_probs=107.4

Q ss_pred             CCCCCcCEEEEECCCCcEEEEEehhHHHHHHHHhccC-------------------------------C--------ccc
Q 021709            1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELN-------------------------------L--------EET   41 (308)
Q Consensus         1 m~~~~~~~~~V~~~~~~~~Giit~~D~~~~~~~~~~~-------------------------------~--------~~~   41 (308)
                      |.+++++.+||+|++|+++|++|..|+++.+......                               .        ...
T Consensus        33 m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~  112 (245)
T 3l2b_A           33 MRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAE  112 (245)
T ss_dssp             HHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGG
T ss_pred             HHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChH
Confidence            5678999999999889999999999999665432100                               0        000


Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhcc
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (308)
                      .+.+.+.++.+.+-.+  -.++...+.+.+...+++..+..+.     .++... ..                    +..
T Consensus       113 ~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~-----~~v~~~-a~--------------------~~~  164 (245)
T 3l2b_A          113 SLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPS-----KEIIEL-AK--------------------KNN  164 (245)
T ss_dssp             GGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCC-----HHHHHH-HH--------------------HHT
T ss_pred             HHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCC-----HHHHHH-HH--------------------HcC
Confidence            1122222333333322  3677778888888888777532211     111110 00                    000


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                      ......+...+..........++.++|.+ +++.++++++++.+++++|.+++++++||+| +|+++|++|.+|++
T Consensus       165 ~~~i~t~~d~~~~~~~~~~~~~v~~im~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll  239 (245)
T 3l2b_A          165 ITVITTPHDSFTASRLIVQSLPVDYVMTK-DNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI  239 (245)
T ss_dssp             CEEEECSSCHHHHHHHGGGGSBHHHHSBC-TTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC---
T ss_pred             CeEEEeCCChHHHHHHHhcCCceeeEecC-CccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhh
Confidence            11122233333444445556779999975 6899999999999999999999999999999 89999999999997

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.38  E-value=1.6e-12  Score=87.61  Aligned_cols=69  Identities=30%  Similarity=0.415  Sum_probs=63.2

Q ss_pred             eeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceee
Q 021709          154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  222 (308)
Q Consensus       154 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v  222 (308)
                      ++++++++++.+|+++|.+++++++||+++|+++|++|.+|+++++.+.+..+...+++++|+++|.++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            689999999999999999999999999999999999999999877777777777789999999988764

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.38  E-value=4.4e-14  Score=131.77  Aligned_cols=116  Identities=25%  Similarity=0.330  Sum_probs=5.8

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc--Cce
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPE  220 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~  220 (308)
                      +.++|.  +++.++.+++++.++++.|.+++++.+||++ +++++|+||.+|+. ..  .   ....++.++|.+  ++.
T Consensus        97 ~~~iM~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~-~~--~---~~~~~v~~im~~~~~~~  168 (494)
T 1vrd_A           97 TENGII--YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVR-FE--K---NLSKKIKDLMTPREKLI  168 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCc--cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHH-hh--c---CCCCcHHHHhCCCCCCe
Confidence            567787  6899999999999999999999999999999 78999999999995 32  1   125689999998  999


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ++++++++.+++++|.+++.+.+||+|++|+++|+||..||++++..
T Consensus       169 ~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          169 VAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             ----------------------------------------CHHHHTC
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999997654

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.37  E-value=5.5e-12  Score=117.42  Aligned_cols=159  Identities=11%  Similarity=0.155  Sum_probs=121.0

Q ss_pred             cccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee---CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709           43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (308)
Q Consensus        43 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      .++.|.++++++++++++.+++++|.+++++++||+|   +++++|+|+.+|+...                        
T Consensus       115 ~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~------------------------  170 (511)
T 3usb_A          115 SESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI------------------------  170 (511)
T ss_dssp             SSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC------------------------
T ss_pred             cccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh------------------------
Confidence            4566778899999999999999999999999999998   5799999999998521                        


Q ss_pred             ccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHH
Q 021709          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (308)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~  198 (308)
                                        .....++.++|.+ .+++++++++++.+++++|.+++.+.+||+| +|+++|++|..|+++.
T Consensus       171 ------------------~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~  231 (511)
T 3usb_A          171 ------------------QDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKV  231 (511)
T ss_dssp             ------------------CCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             ------------------ccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHh
Confidence                              0124457888873 3899999999999999999999999999999 9999999999999744


Q ss_pred             HHhcCCCccccccccccccCce--eecCCCCHHHHHHHHHhCCCCEEEEECCCC
Q 021709          199 VISQNLPADSTLVEKVMTPNPE--CATIDTPIVDALHIMHDGKFLHLPVVDRDG  250 (308)
Q Consensus       199 ~~~~~~~~~~~~v~~~~~~~~~--~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~  250 (308)
                      .... .     ...+.+.+.+.  .+.......+.++.+.+.+...++|-..++
T Consensus       232 ~~~p-~-----a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g  279 (511)
T 3usb_A          232 IEFP-N-----SAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHG  279 (511)
T ss_dssp             HHCT-T-----CCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred             hhcc-c-----chhhhccceeeeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence            4321 1     12222222222  232333445556678888998887765554

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.35  E-value=1.1e-13  Score=129.00  Aligned_cols=165  Identities=15%  Similarity=0.096  Sum_probs=24.1

Q ss_pred             ccc-cccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           44 SKV-MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        44 ~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      .+. |.++++++++++++.+|+++|.+++++++||+|+    ++++|+|+..|++..  .                    
T Consensus        99 ~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~--------------------  156 (503)
T 1me8_A           99 FKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L--------------------  156 (503)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             cccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h--------------------
Confidence            344 8889999999999999999999999999999984    799999999998642  0                    


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~  197 (308)
                                         .....++.++|.+..+++++++++++.+++++|.+++.+.+||+| +|+++|+||.+|+++
T Consensus       157 -------------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~  217 (503)
T 1me8_A          157 -------------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDR  217 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHH
Confidence                               012235788887323499999999999999999999999999999 899999999999974


Q ss_pred             HHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEE
Q 021709          198 RVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVD  254 (308)
Q Consensus       198 ~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iG  254 (308)
                      ... ..... ..+...++.  ...+.. ....+.++.|.+.+.+.++|-..+|...|
T Consensus       218 ~~~-~~~~~-~d~~~~l~v--~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~  269 (503)
T 1me8_A          218 SQV-CHNEL-VDSQKRYLV--GAGINT-RDFRERVPALVEAGADVLCIDSSDGFSEW  269 (503)
T ss_dssp             -----CCCC-BCTTSCBCC--EEEECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHH
T ss_pred             hhh-cccch-hcccccccc--ccccCc-hhHHHHHHHHHhhhccceEEecccCcccc
Confidence            443 22211 112222221  122334 55566678888888887766333344333

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.28  E-value=5.3e-12  Score=117.13  Aligned_cols=113  Identities=19%  Similarity=0.284  Sum_probs=88.1

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (308)
                      .++++|..+++++++++++.+++++|.+++++++||+| +++++|+|+.+|+...                         
T Consensus        90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~-------------------------  144 (496)
T 4fxs_A           90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV-------------------------  144 (496)
T ss_dssp             HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC-------------------------
T ss_pred             ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc-------------------------
Confidence            45678889999999999999999999999999999998 6899999999998511                         


Q ss_pred             cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                       .....++.++|.+.++++++++++++.+++++|.+++.+.+||+| +|+++|+||..|++
T Consensus       145 -----------------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl  204 (496)
T 4fxs_A          145 -----------------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFH  204 (496)
T ss_dssp             -----------------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC---
T ss_pred             -----------------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHH
Confidence                             012346889997334799999999999999999999999999999 89999999999997

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.26  E-value=2.7e-12  Score=118.97  Aligned_cols=115  Identities=24%  Similarity=0.298  Sum_probs=2.7

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhcc
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (308)
                      .++++|.++++++++++++.+|+++|.+++++.+||+|+++++|+|+.+|+....                         
T Consensus        89 ~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~-------------------------  143 (490)
T 4avf_A           89 KHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKP-------------------------  143 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhcc-------------------------
Confidence            4678898999999999999999999999999999999999999999999985210                         


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHH
Q 021709          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (308)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~  198 (308)
                                       ....++.++|.++.+++++++++++.+++++|.+++.+.+||+| +++++|+||..|+++.
T Consensus       144 -----------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~  204 (490)
T 4avf_A          144 -----------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKA  204 (490)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             -----------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhh
Confidence                             11235788886323799999999999999999999999999999 8999999999999733

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.23  E-value=8.5e-13  Score=122.62  Aligned_cols=111  Identities=29%  Similarity=0.408  Sum_probs=0.5

Q ss_pred             ccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecC
Q 021709          145 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI  224 (308)
Q Consensus       145 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~  224 (308)
                      .+.|.  .++.+++++.++.++++.|.+++++.+||+++++++|+||.+|++ .      . ...++.++|.+++.++++
T Consensus        96 ~~~m~--~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~-~------~-~~~~v~~im~~~~~~v~~  165 (486)
T 2cu0_A           96 ERLIV--EDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIA-A------R-EGKLVKELMTKEVITVPE  165 (486)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhc-c------C-CCCCHHHHccCCCeEECC
Confidence            45666  689999999999999999999999999999888999999999995 2      1 256899999989999999


Q ss_pred             CCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       225 ~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      ++++.+++++|.+++.+.+||+|++|+++|+||..||++..
T Consensus       166 ~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          166 SIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             -----------------------------------------
T ss_pred             cCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhh
Confidence            99999999999999999999999999999999999999874

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.22  E-value=2.6e-13  Score=127.10  Aligned_cols=118  Identities=24%  Similarity=0.292  Sum_probs=70.4

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeC----CEEEEEeeHHHHHHHHHhcCCCcccccccccccc-
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-  217 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~-  217 (308)
                      .+.++|.  +++.++.++.++.+++++|.+++++.+||+++    ++++|+||.+|+. ....   .....++.++|.+ 
T Consensus       109 ~~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~-~~~~---~~~~~~v~~vm~~~  182 (514)
T 1jcn_A          109 NFEQGFI--TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDID-FLAE---KDHTTLLSEVMTPR  182 (514)
T ss_dssp             TCCTTSC--SSCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------CC
T ss_pred             hhhhccc--cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHH-hhhh---ccCCCCHHHHhCCC
Confidence            4678887  67899999999999999999999999999984    7999999999994 3211   1225689999998 


Q ss_pred             -CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          218 -NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       218 -~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                       ++.++++++++.+++++|.+++.+.+||||++|+++|+||+.||++++.
T Consensus       183 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          183 IELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             BCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence             9999999999999999999999999999999999999999999997543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.21  E-value=8.2e-11  Score=109.59  Aligned_cols=114  Identities=18%  Similarity=0.261  Sum_probs=100.5

Q ss_pred             cccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee---CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709           43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (308)
Q Consensus        43 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      ++++|.++++++++++++.++++.|.++++.++||++   +++++|+|+.+|++..                        
T Consensus        92 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~------------------------  147 (491)
T 1zfj_A           92 SENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI------------------------  147 (491)
T ss_dssp             HTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC------------------------
T ss_pred             HHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh------------------------
Confidence            5789999999999999999999999999999999997   5899999999998632                        


Q ss_pred             ccCCCCCChhHHHHHHHHHhcCCCcccccCCCC-ceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHH
Q 021709          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKS-KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (308)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~  197 (308)
                                        .....++.++|.  + ++.++++++++.++++.|.+++.+.+||++ +++++|++|..|+++
T Consensus       148 ------------------~~~~~~v~~im~--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~  207 (491)
T 1zfj_A          148 ------------------SDYNAPISEHMT--SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEK  207 (491)
T ss_dssp             ------------------SCSSSBTTTSCC--CSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred             ------------------ccCCCcHHHHcC--CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHH
Confidence                              012346888997  5 789999999999999999999999999999 899999999999974


Q ss_pred             HHH
Q 021709          198 RVI  200 (308)
Q Consensus       198 ~~~  200 (308)
                      .+.
T Consensus       208 ~~~  210 (491)
T 1zfj_A          208 VIE  210 (491)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.15  E-value=1.9e-11  Score=113.88  Aligned_cols=158  Identities=17%  Similarity=0.277  Sum_probs=19.5

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (308)
                      .++++|.++++++++++++.+|+++|.++++..+||+| +++++|+|+..|+.+..                        
T Consensus        96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~------------------------  151 (494)
T 1vrd_A           96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK------------------------  151 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc------------------------
Confidence            45788999999999999999999999999999999998 68999999999986310                        


Q ss_pred             cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~  199 (308)
                                        ....++.++|.+..++.++++++++.+++++|.+++.+.+||+| +++++|++|..|+++. 
T Consensus       152 ------------------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~-  212 (494)
T 1vrd_A          152 ------------------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSV-  212 (494)
T ss_dssp             ---------------------------------------------------------------------------CHHH-
T ss_pred             ------------------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhh-
Confidence                              01234778887223899999999999999999999999999999 8999999999999744 


Q ss_pred             HhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEE
Q 021709          200 ISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPV  245 (308)
Q Consensus       200 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~V  245 (308)
                      +.......+. -..++.  -.-+.......+.+..+.+.+...+.+
T Consensus       213 ~~~~~~~~D~-~~~l~v--ga~ig~~~~~~~~a~~l~~aGvd~v~i  255 (494)
T 1vrd_A          213 IEHPNAARDE-KGRLLV--GAAVGTSPETMERVEKLVKAGVDVIVI  255 (494)
T ss_dssp             HTCTTCCBCT-TSCBCC--EEEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             hccccccccc-hhhhcc--ccccCcCHhHHHHHHHHHHhCCCEEEE
Confidence            3221110000 000000  001122244556666677777766654

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.13  E-value=1.9e-11  Score=111.47  Aligned_cols=107  Identities=14%  Similarity=0.204  Sum_probs=0.4

Q ss_pred             cccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 021709           45 KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (308)
Q Consensus        45 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (308)
                      ..|..+++++.|+.++.+|+.+|.++++..+||+++    ++++|+++.+|+...                         
T Consensus       142 ~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~-------------------------  196 (556)
T 4af0_A          142 NGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ-------------------------  196 (556)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc-------------------------
Confidence            346678999999999999999999999999999974    689999999997311                         


Q ss_pred             cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                        ....++.++|+  +++++++++.++++|.++|.++++..+||+| +++++|+||.+|+.
T Consensus       197 ------------------d~~~~V~evMT--~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~  253 (556)
T 4af0_A          197 ------------------DAETPIKSVMT--TEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLL  253 (556)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             ------------------ccceEhhhhcc--cceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhh
Confidence                              11235889998  6799999999999999999999999999999 99999999999996

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.11  E-value=1.4e-11  Score=114.42  Aligned_cols=162  Identities=15%  Similarity=0.147  Sum_probs=22.6

Q ss_pred             cccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccC
Q 021709           43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG  122 (308)
Q Consensus        43 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (308)
                      +.+.|..+++++++++++.+++++|.++++.++||+++++++|+|+.+|++..                           
T Consensus        95 ~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~~---------------------------  147 (486)
T 2cu0_A           95 AERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAAR---------------------------  147 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhccC---------------------------
Confidence            35578889999999999999999999999999999988999999999998630                           


Q ss_pred             CCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHh
Q 021709          123 TSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS  201 (308)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~  201 (308)
                                       ...++.++|.  +++.++++++++.++++.|.+++.+.+||++ +++++|++|.+|++ +...
T Consensus       148 -----------------~~~~v~~im~--~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil-~~~~  207 (486)
T 2cu0_A          148 -----------------EGKLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLV-ARKK  207 (486)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -----------------CCCCHHHHcc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHH-Hhhh
Confidence                             0123677786  5789999999999999999999999999999 89999999999996 4432


Q ss_pred             cCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEE
Q 021709          202 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV  256 (308)
Q Consensus       202 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGii  256 (308)
                      ..... ......++..  ..+..++  .+.+..+...+...++|-...|...+++
T Consensus       208 ~~~~~-~~~~g~~~v~--~~~~~~~--~~~a~~l~~~gvd~lvvdta~G~~~~~L  257 (486)
T 2cu0_A          208 YKNAV-RDENGELLVA--AAVSPFD--IKRAIELDKAGVDVIVVDTAHAHNLKAI  257 (486)
T ss_dssp             CTTCC-BCTTSCBCCE--EEECTTC--HHHHHHHHHTTCSEEEEECSCCCCHHHH
T ss_pred             ccccc-cccCCceeec--ceechhh--HHHHHHHHHhcCCceEEEecCCcEeehh
Confidence            11100 0001111111  1122233  4556778888888765443456554444

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.00  E-value=2.6e-11  Score=113.48  Aligned_cols=115  Identities=11%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (308)
                      +++++|.++++++.+++++.+|+++|.+++++.+||+|+    ++++|+|+..|+.... .                   
T Consensus       109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~-~-------------------  168 (514)
T 1jcn_A          109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLA-E-------------------  168 (514)
T ss_dssp             TCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC------------------------
T ss_pred             hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhh-h-------------------
Confidence            577889999999999999999999999999999999985    7999999999985320 0                   


Q ss_pred             hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                          .....++.++|.+..++.++++++++.+++++|.+++.+.+||+| +|+++|++|.+|++
T Consensus       169 --------------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll  228 (514)
T 1jcn_A          169 --------------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLK  228 (514)
T ss_dssp             --------------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCS
T ss_pred             --------------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHH
Confidence                                012235778887222899999999999999999999999999999 89999999999996

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.95  E-value=4.7e-10  Score=75.40  Aligned_cols=46  Identities=13%  Similarity=0.138  Sum_probs=43.2

Q ss_pred             CceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHH
Q 021709           50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYD   95 (308)
Q Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~   95 (308)
                      +++++++++++.+|+++|.++++.++||+|+|+++|++|.+|+++.
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~   46 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDK   46 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence            3679999999999999999999999999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	4e-14
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	3e-07
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	0.002
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	3e-11
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	4e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	1e-10
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.003
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	4e-10
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	8e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-09
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	4e-06
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-05
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	5e-09
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	7e-05
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	6e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	4e-07
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-04
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-08
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-08
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	2e-06
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	6e-06
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-08
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	0.002
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	0.004
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	3e-08
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	1e-04
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.002
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.002
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	4e-08
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-07
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	3e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	1e-07
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	2e-07
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-07
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	3e-07
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	7e-07
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	5e-04
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	8e-07
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.002
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-06
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-05
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	4e-05
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.001
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	1e-05
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	8e-04
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	1e-05
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	2e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	1e-04
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	3e-04
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	0.004

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 65.9 bits (160), Expect = 4e-14
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
             VV I P D+V  A +KM    + + +V  + K  GILT +D   +    + P   T V
Sbjct: 13  HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQV 72

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 267
           +++MT       ++    D + ++ + +  HLPV+D DG V+ ++ +  +   A++
Sbjct: 73  KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           MAA  + ALL+     L+ GILT++D + +    +  +++T V ++MTR   +V  +   
Sbjct: 31  MAADNIGALLVMKDEKLV-GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTN 89

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98
            + +  + + + RHLPV+++G+VI LL I   + DAI+
Sbjct: 90  EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 20/162 (12%), Positives = 43/162 (26%), Gaps = 41/162 (25%)

Query: 43  VSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 99
           V  ++         +  D     A+QKM       L V+++ +++ +L        +   
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL 63

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
                                                                +V  +  
Sbjct: 64  D--------------------------------------KPVKDTQVKEIMTRQVAYVDL 85

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS 201
            +T       + E+R+    V  + K  G+L+  D++   IS
Sbjct: 86  NNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS 127

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.3 bits (140), Expect = 3e-11
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 148 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPA 206
           I   + +  +  T  V +A    ++ R+S+  V  E  +   I +  D++     +    
Sbjct: 16  IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN 75

Query: 207 DSTL------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260
                                  +   +   ++ + + +   L VVD    V  +V +  
Sbjct: 76  LDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSD 135

Query: 261 ITHAAVATVG 270
           I  A V T G
Sbjct: 136 ILQALVLTGG 145

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 10/103 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEET------PVSKVMTRNPTFV 54
               RV AL + D    +  I +  D+      +  N  +                    
Sbjct: 38  FVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKC 97

Query: 55  LSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 93
                    + ++V+ +   L VV E+  V  ++   DI + L
Sbjct: 98  YLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 140

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 55.5 bits (133), Expect = 1e-10
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL--TSKDILMRVISQNLPADST 209
           +  V +SP D V    +           +T   +    L        +  + +       
Sbjct: 4   TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFL 63

Query: 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                   +   A     + +A  I+   K   LP+V+ + ++V ++
Sbjct: 64  EEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAII 110

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 93  LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKS 152
           + D      R    G  I        +  G   S     I+ L+E      L  I+ ++ 
Sbjct: 15  VRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRD---IDFLKEEEHDRFLEEIMTKRE 71

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
            +V      T+  A + +   +     +  EN +   I+   D+ 
Sbjct: 72  DLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLK 116

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 11/155 (7%)

Query: 42  PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
            V  +M R+ T + S +   + L  + Q K +  P V+               + +    
Sbjct: 12  QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-----------PDTNTLLGSI 60

Query: 102 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTD 161
              E    +   +    +     +          +                    +    
Sbjct: 61  DRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGT 120

Query: 162 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
           ++         L L  A VT   K  G++   +I 
Sbjct: 121 SLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQ 155

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 30  RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL-- 87
           R   RE N+     +  + ++P  ++  T   +              V   G+++ ++  
Sbjct: 92  RWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVAL 151

Query: 88  -DIAK 91
            +I  
Sbjct: 152 AEIQA 156

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 52.5 bits (125), Expect = 2e-09
 Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
            K++ + P+ +V  A++ M+E  + S VV  ++       +K  ++R +          V
Sbjct: 13  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 72

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 265
           E++MT N   A ++TP+ + L  M + +  H+ + + +G +V +  +  +  A+
Sbjct: 73  ERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEAS 125

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    V +L++ + +  + G  T  DI  RVI   L   + PV ++MTRN      +T  
Sbjct: 31  MMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP-YDIPVERIMTRNLITANVNTPL 89

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERA 103
            E L+KM + + +H+ + E G+++ +  ++  L  +  R+E A
Sbjct: 90  GEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLETA 132

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 38/157 (24%)

Query: 40  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 99
           + P+   MT+    V   T   EA + M++     L V+                     
Sbjct: 4   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN-------------------- 43

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
                             +          +  I  +        +         ++T + 
Sbjct: 44  ------------------DDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANV 85

Query: 160 TDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
              +    +KM E R+   ++  E K  GI T  D+L
Sbjct: 86  NTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLL 122

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 147 IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--KPRGILTSKDILMRVISQNL 204
           +IP  SK+V    +  V  A   ++   + +A +         G+LT  D +  +     
Sbjct: 18  LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYK 77

Query: 205 PADSTL--------------VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRD- 249
            A   +                +       C + +  + DA+  +   K   LPV+D + 
Sbjct: 78  SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 137

Query: 250 GDVVDVV 256
           G+ + ++
Sbjct: 138 GNTLYIL 144

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 19/109 (17%)

Query: 8   ALLLTDSNALLCGILTDKDIATRVIARELNLEET--------------PVSKVMTRNPTF 53
           A L         G+LT  D    +     +                     +   +    
Sbjct: 49  APLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVC 108

Query: 54  VLSDTLAVEALQKMVQGKFRHLPVV--ENGEVIALL---DIAKCLYDAI 97
           +  +    +A+  +++ K   LPV+  E+G  + +L    I K L   I
Sbjct: 109 ISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI 157

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (123), Expect = 6e-09
 Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDILMRVISQNLP---- 205
           +  + +   T  V+   + + + R+SS  ++        +  + D+L  +          
Sbjct: 16  QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL 75

Query: 206 --ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
              ++ +            T +  +   +  +   +     VVD  G +V V+ +  I  
Sbjct: 76  SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILK 135

Query: 264 AAV 266
             +
Sbjct: 136 YIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 13/89 (14%), Positives = 36/89 (40%)

Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTA 273
           +   N +   + TP++D + ++  G+   +P++D +G +++V +   +       + N  
Sbjct: 14  ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL 73

Query: 274 GSNNEAASTMMQKFWDSAMALSPNDDEED 302
             +   A       ++     + ND    
Sbjct: 74  SLSVGEALMRRSDDFEGVYTCTKNDKLST 102

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 32/155 (20%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           ++ +   N       T  ++ +Q + QG+   +P+++    +  +  A  +   I     
Sbjct: 11  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG-- 68

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                        I          +L     +   V T +  D 
Sbjct: 69  -----------------------------IYNDLSLSVGEALMRRSDDFEGVYTCTKNDK 99

Query: 163 VLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
           +      + + R+    V  +  +  G+LT  DIL
Sbjct: 100 LSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 1/114 (0%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADSTL 210
           S   T++   TV  A K M E  L   VV  +     G+L+ + I+ R I +N   D   
Sbjct: 11  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 70

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
           +  VM         D  + D    + +       VVD  G VV +V +  ++  
Sbjct: 71  IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 9/158 (5%)

Query: 40  ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 99
              +     R  + V   T    AL+ ++      LPVV+             +      
Sbjct: 3   GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD--------SEGNLVGIVDET 54

Query: 100 MERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISP 159
                 +   I  + E         I   +  +   +  +  P+          V+  +P
Sbjct: 55  DLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATP 114

Query: 160 TDTVLMATKKMLELRLSSA-VVTVENKPRGILTSKDIL 196
             TV     KM +  +    V+  E    G++   D+L
Sbjct: 115 HMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 15/95 (15%), Positives = 32/95 (33%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 270
           +E             TP+  AL  +     + LPVVD +G++V +VD   +   +     
Sbjct: 6   IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRI 65

Query: 271 NTAGSNNEAASTMMQKFWDSAMALSPNDDEEDNRR 305
             +     ++           +     + +  N+ 
Sbjct: 66  MKSTELAASSEEEWILESHPTLLFEKFELQLPNKP 100

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 30/146 (20%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-NKPRGILTSKDILMRVISQNLPADST 209
           +  V  +     +  A K +L     +  V        GI+   D+L       +   + 
Sbjct: 11  QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE 70

Query: 210 L-----------------------------VEKVMTPNPECATIDTPIVDALHIMHDGKF 240
           L                             V ++MT +   AT    + +    M     
Sbjct: 71  LAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSI 130

Query: 241 LHLPVVDRDGDVVDVVDVIHITHAAV 266
             LPV+  +GD++ ++    +    V
Sbjct: 131 EQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           K++V++++    +    K M E  + S +V   NKP GI+T +DI+  +      +  T 
Sbjct: 11  KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGK--SLETK 68

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
            E+ MT +      D+PI  AL +M      HLPVVD  G++  ++ +  IT A
Sbjct: 69  AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80
          +EE  V + M      V  D    +  + M +     + VV+ 
Sbjct: 1  MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG 43

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246
           +  +V++ M       T D  + D   +M +     + VV
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVV 41

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.1 bits (116), Expect = 3e-08
 Identities = 18/106 (16%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTL 210
           + V  +   +T+  A + M E  + +  +  ++ +  G+LT +DI+++ ++  L  ++  
Sbjct: 9   AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             ++   +      +  I + L++M + +   +PV+  +  +V +V
Sbjct: 69  AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIV 113

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
           M    + AL +   +  L G+LTD+DI  + +A  L+       ++   +  +V ++   
Sbjct: 27  MREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASI 86

Query: 61  VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCL 93
            E L  M + + R +PV+    ++ ++   DIA+ L
Sbjct: 87  QEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 9/58 (15%), Positives = 17/58 (29%)

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
           T    +M     C      +  A   M +     LP+   D  +  ++    I    +
Sbjct: 1   TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGL 58

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 20/156 (12%), Positives = 42/156 (26%), Gaps = 37/156 (23%)

Query: 41  TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARM 100
           T    +M    T V        A Q M +     LP+  +                    
Sbjct: 1   TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-------------------- 40

Query: 101 ERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPT 160
                            +      ++  +  I+ L   +   + +     +  +  +   
Sbjct: 41  -----------------DDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDAN 83

Query: 161 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
            ++      M E ++    V  E++  GI+T  DI 
Sbjct: 84  ASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA 119

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 49.1 bits (116), Expect = 4e-08
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQNLPADSTL 210
              ++P   V  A + M   R+S   +       K  GI+T++D+           ++ +
Sbjct: 7   PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY-----NAPI 61

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIHITHA 264
            E + + +   A + T +  A  I+H+ +   LP+VD  G +       D+  VI   HA
Sbjct: 62  SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHA 121

Query: 265 A 265
           A
Sbjct: 122 A 122

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 2/115 (1%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
           + V TI  T ++    +  +E    S+VV  E    GI+T+ D+ +  I++        V
Sbjct: 8   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDV-LEAIAEGDDLAEVKV 66

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
            +VM  +    +    I +A   M       L V + D +++ V+    I  A +
Sbjct: 67  WEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAKM 120

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 39/154 (25%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           V  VM  +   +       + L+  V+       VV+ G  +                  
Sbjct: 2   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV------------------ 43

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                                 I      +E + E      +      +  +VTISP  T
Sbjct: 44  ---------------------GIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRAT 82

Query: 163 VLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
           +  A +KM++  +   +V  +++  G++++ DIL
Sbjct: 83  IKEAAEKMVKNVVWRLLVEEDDEIIGVISATDIL 116

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 20/114 (17%), Positives = 45/114 (39%)

Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
           K   V++  T T+     ++ + R+  AV+T  + P+  +        + +     D   
Sbjct: 8   KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG 67

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
               +  +P       P+  A   M      H+ VV+++G++V V+ +  +   
Sbjct: 68  PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 121

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLS------SAVVTVENKPRGILTSKDILMRVISQNLP 205
            + V +    TV    + +              VV  + + +G+L+ +D+++        
Sbjct: 9   PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD------ 62

Query: 206 ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
              T V ++M P       DT   +   +M D  F  LPVVD +G +V +V V  +   
Sbjct: 63  -PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDV 120

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 19/152 (12%), Positives = 50/152 (32%), Gaps = 20/152 (13%)

Query: 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR--GI 189
           ++ ++  +   +   ++P   +++    T  V  +   +    + SA +      +  G+
Sbjct: 10  LKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGL 69

Query: 190 LTSKDILMRVISQNLPA------------------DSTLVEKVMTPNPECATIDTPIVDA 231
           LT  D +  +      +                  +       + P          ++DA
Sbjct: 70  LTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDA 129

Query: 232 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
              M   +   +P++D DG+    + V  +T 
Sbjct: 130 CLAMSKSRARRIPLIDVDGETGSEMIVSVLTQ 161

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS---QNLPADS 208
           ++ V+I    TV  A   +      +  +        ++  ++ L+ VIS     +  D 
Sbjct: 9   TEFVSIVANQTVRSAMYVLKNQADMAETIYY----VYVVDQENHLVGVISLRDLIVNDDD 64

Query: 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV------DVVDVIH 260
           TL+  ++        +     D    + D  FL +PV D D  ++      D++DVI 
Sbjct: 65  TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 122

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.7 bits (107), Expect = 7e-07
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPR-GILTSKDILMRVISQNL------ 204
            K   +     +     ++LE  ++  V    +    G++    +L              
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 71

Query: 205 --------PADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
                      +    ++M  +P    +DTP+ +AL +M D     +PVVD  G++V  +
Sbjct: 72  ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDL 130

Query: 257 DVIHITHA 264
           + + I  A
Sbjct: 131 NSLEILLA 138

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 25/155 (16%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           V K+++  PT V  DT   E + ++++        V     +  +     L         
Sbjct: 6   VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKV------ 59

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
                              G    G     E +R  M R             V +     
Sbjct: 60  ------------------SGFHFFGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTP 101

Query: 163 VLMATKKMLELRLSSAVVTVEN-KPRGILTSKDIL 196
           +  A K M++  +    V  E  +  G L S +IL
Sbjct: 102 LEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 45.4 bits (106), Expect = 8e-07
 Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 8/122 (6%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--------KPRGILTSKDILMRVISQN 203
                +S  D +  A KK+ E  +   +V  E              + S           
Sbjct: 9   KNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDL 68

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
               +T +   MTPNP      +    A++IM    F  LPVVD +   V +V       
Sbjct: 69  YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLL 128

Query: 264 AA 265
             
Sbjct: 129 LY 130

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGD 251
           +E +M  NP   + +  +  A   +++G    + V +   +
Sbjct: 3   IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIE 43

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENK-PRGILTSKDILMRVISQ-------N 203
               T+  T T+  A   M  L +    +   NK   GI++ +D+L    S        +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69

Query: 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 263
             A  T + +VM  +         + ++   M   K   LPVV     +V ++       
Sbjct: 70  SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVT 128

Query: 264 AAV 266
            A+
Sbjct: 129 IAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRV-------IARELNLEETPVSKVMTRNPTF 53
           M A  +  + + D+N  L GI++ +D+              +    ETP+ +VM  + T 
Sbjct: 28  MEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHTDVTS 87

Query: 54  VLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL---DIAKCLYDAIARME 101
           V       E+   M + K   LPVV    ++ ++   D      + +   E
Sbjct: 88  VAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLLELQE 138

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 30/160 (18%)

Query: 43  VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMER 102
           V  +MTR+P  +L      +A   M     RH+P+V+  + +  +   + L  A     +
Sbjct: 4   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 63

Query: 103 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDT 162
            + +G ++A      E                                 + V +++P   
Sbjct: 64  RSAQGDSLAFETPLFEVMH------------------------------TDVTSVAPQAG 93

Query: 163 VLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQ 202
           +  +   M + ++    V  ++   GI+T  D +   I+ 
Sbjct: 94  LKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINL 133

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 18/78 (23%), Positives = 37/78 (47%)

Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 270
           VE +MT +P        + DA H+M      H+P+VD +  ++ +V    +  A  +++ 
Sbjct: 4   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 63

Query: 271 NTAGSNNEAASTMMQKFW 288
            +A  ++ A  T + +  
Sbjct: 64  RSAQGDSLAFETPLFEVM 81

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 148 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQN--- 203
           I   S + T S    V    K + E  +S+  +         +  S D++  +   +   
Sbjct: 8   IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSN 67

Query: 204 ---LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIH 260
                 ++ L                 +      +   +   L VVD +  +  ++ +  
Sbjct: 68  LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLAD 127

Query: 261 ITHAAV 266
           I +  +
Sbjct: 128 ILNYII 133

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 10/124 (8%)

Query: 1   MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMT------RNPTFV 54
           +A + + A+ + +S   L  +    D+   +   + +  +  V + +             
Sbjct: 30  LAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTC 89

Query: 55  LSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCLYDAIARMERAAEKGKAI 110
            +          +   +   L VV EN ++  +L   DI   +           E+    
Sbjct: 90  RATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPEQTDNF 149

Query: 111 AAAV 114
            +AV
Sbjct: 150 ESAV 153

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLV 211
              VTI+   T   A +   + ++ S  V  +      + S   ++    +   A     
Sbjct: 9   QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAM---- 64

Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVV 256
             ++  +      +  +  A  +M +  +  + VVD  G  V ++
Sbjct: 65  --LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGIL 107

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPAD---- 207
           +KV TI     +  A K ML        V  ++     + +    ++ +++ +       
Sbjct: 10  TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDY 69

Query: 208 --STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 264
               +V+ VM  N         +  A   M   +   L ++++D  +  ++    +  A
Sbjct: 70  FYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA 128

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
               +  + TV     +M + + +  +V         + +K+ L+ +   +         
Sbjct: 10  DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSV------F 63

Query: 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 266
             ++        +  I  AL +  + +  +LPVVD +  +   V +     A +
Sbjct: 64  NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 33  ARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKC 92
                     +  ++  +P  V   T     +    +   R   V  NG ++ ++     
Sbjct: 92  LPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDV 151

Query: 93  LYDAIARMER 102
           L   IA+M  
Sbjct: 152 L-KHIAQMAN 160

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 18/163 (11%)

Query: 40  ETPVSKVMTRNP------TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCL 93
           +T    VM                    +    + +  +   PVV + E   L+      
Sbjct: 2   KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR 61

Query: 94  YDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153
              I+      ++   ++ ++    +H           +  LR  +              
Sbjct: 62  DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTL-KLRNILDLS----------- 109

Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196
             T++    + +      +L L   +VT   +  GI+T KD+L
Sbjct: 110 PFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVL 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.87
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.86
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.85
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.85
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.85
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.84
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.83
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.82
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.82
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.81
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.81
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.8
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.8
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.8
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.8
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.8
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.8
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.79
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.79
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.78
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.78
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.78
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.78
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.78
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.77
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.77
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.76
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.76
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.76
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.76
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.75
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.75
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.73
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.73
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.73
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.73
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.72
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.72
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.72
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.7
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.7
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.69
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.67
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.67
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.67
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.63
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.63
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.62
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.6
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.59
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.58
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.57
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	82.31

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.87  E-value=2.3e-21  Score=146.25  Aligned_cols=124  Identities=28%  Similarity=0.421  Sum_probs=112.7

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCce
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE  220 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~  220 (308)
                      ...++++|.  ++++++++++++.+|+++|.+++++++||+++++++|++|..|++ +.+..+... ..++.++|.+++.
T Consensus         3 ~~~V~d~m~--~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~-~~~~~~~~~-~~~v~~~~~~~~~   78 (127)
T d2ef7a1           3 EEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKSL-ETKAEEFMTASLI   78 (127)
T ss_dssp             CCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHHTTCCT-TCBGGGTSEECCC
T ss_pred             ccCHHHhCC--CCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHH-HHHHhhccc-cchhhhhhhhhcc
Confidence            456899998  789999999999999999999999999999988999999999996 555555444 5689999999999


Q ss_pred             eecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          221 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       221 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                      ++++++++.++++.|.+++.+++||+|++|+++|+||..||++++...
T Consensus        79 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~~  126 (127)
T d2ef7a1          79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (127)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999987653

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.86  E-value=1.6e-21  Score=150.06  Aligned_cols=121  Identities=25%  Similarity=0.296  Sum_probs=112.5

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCcee
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (308)
                      +++++|.  +++.++++++++.+|++.|.+++.+++||++ +|+++|++|.+|+++.+...+......+++++|.+++.+
T Consensus         4 ~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~~   81 (142)
T d1pvma4           4 RVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPK   81 (142)
T ss_dssp             BGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCE
T ss_pred             EHHHhCC--CCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccccccc
Confidence            4789998  7899999999999999999999999999998 789999999999986776777776677899999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      +++++++.+++++|.+++.+++||+|++|+++|+||..||++++
T Consensus        82 v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          82 VKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             EETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             ccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999999999999754

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.85  E-value=2.9e-21  Score=145.67  Aligned_cols=122  Identities=26%  Similarity=0.453  Sum_probs=108.6

Q ss_pred             cccccCC-CCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceee
Q 021709          144 LSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  222 (308)
Q Consensus       144 v~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v  222 (308)
                      ++++|.. .++++++++++++.+|+++|.+++++++||+++++++|++|.+|++++....+......+++++|++++.++
T Consensus         4 V~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~v   83 (127)
T d2rc3a1           4 VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYV   83 (127)
T ss_dssp             HHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCCB
T ss_pred             HHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhhcccccceeEeeeccceeEEe
Confidence            4444432 147899999999999999999999999999999999999999999766666666666789999999999999


Q ss_pred             cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      .+++++.+++++|.+++++++||+| +|+++|+||..||+++++
T Consensus        84 ~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          84 DLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             CTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence            9999999999999999999999998 699999999999999765

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=5.7e-22  Score=148.80  Aligned_cols=119  Identities=17%  Similarity=0.335  Sum_probs=108.9

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCcee
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (308)
                      +++++|.  ++++++.+++++.+|++.|.+++++++||++ +|+++|++|.+|++.+.+..+.......++++|.+++.+
T Consensus         2 t~~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~   79 (123)
T d1y5ha3           2 TARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYY   79 (123)
T ss_dssp             CHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCCC
T ss_pred             CHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeecccee
Confidence            4678887  7899999999999999999999999999998 889999999999976677777666566789999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHH
Q 021709          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA  264 (308)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~  264 (308)
                      +++++++.+++++|.+++++++||+| +|+++|+||..||+++
T Consensus        80 v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          80 VDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             EETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             eeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence            99999999999999999999999998 5899999999999984

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=7.2e-21  Score=142.02  Aligned_cols=118  Identities=23%  Similarity=0.249  Sum_probs=107.8

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeec
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECAT  223 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~  223 (308)
                      ++++|.  +++.++++++++.+|++.|.+++.+++||.++|+++|++|.+|++ +.+..+......++.++|++++.+++
T Consensus         2 V~diM~--~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~-~~l~~~~~~~~~~v~~~m~~~~~~v~   78 (120)
T d1pbja3           2 VEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTIS   78 (120)
T ss_dssp             HHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBCGGGEEC
T ss_pred             hHHhCC--CCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecc-ccccccccccceeEeeeccccccccc
Confidence            567887  789999999999999999999999999999999999999999996 55555555557789999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          224 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      +++++.++++.|.+++.+++||++ +|+++|+||..||++|.
T Consensus        79 ~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          79 PRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence            999999999999999999999986 79999999999999875

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=9e-21  Score=143.92  Aligned_cols=125  Identities=25%  Similarity=0.443  Sum_probs=111.1

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~  219 (308)
                      +.+++++|.  ++++++++++++.+|++.|.+++++++||++ +|+++|++|..|+++.+...+. ....+++++|.+++
T Consensus         4 ~~pV~~im~--~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~-~~~~~v~~im~~~~   80 (132)
T d2yzia1           4 KAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRNL   80 (132)
T ss_dssp             TSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCSC
T ss_pred             CCcHHHHcC--CCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccC-ccceeEeecccccc
Confidence            457999998  7999999999999999999999999999999 8899999999999755444433 34678999999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHh
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~  269 (308)
                      .++++++++.++++.|.+++.+++||++ +|+++|+||..||++++....
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~l  129 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRL  129 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCS
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence            9999999999999999999999999875 799999999999999766443

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.83  E-value=2.8e-20  Score=142.49  Aligned_cols=125  Identities=19%  Similarity=0.184  Sum_probs=109.2

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC-------Cccccccccc
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL-------PADSTLVEKV  214 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~-------~~~~~~v~~~  214 (308)
                      +++++|.  +++.++++++++.+|++.|.+++++++||+| +|+++|++|.+|++........       .....+++++
T Consensus         3 ~v~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (139)
T d2o16a3           3 KVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEV   80 (139)
T ss_dssp             BGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHH
T ss_pred             EHHHhCc--CCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhHh
Confidence            4789998  7899999999999999999999999999999 8999999999999744433211       1224689999


Q ss_pred             cccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhc
Q 021709          215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG  270 (308)
Q Consensus       215 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~  270 (308)
                      |.+++.++++++++.+++++|.+++.+++||+| +|+++|+||..||++++.....
T Consensus        81 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~~~~  135 (139)
T d2o16a3          81 MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLE  135 (139)
T ss_dssp             SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHHHHH
T ss_pred             hccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998 5999999999999998876543

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.82  E-value=6.1e-20  Score=138.23  Aligned_cols=116  Identities=22%  Similarity=0.322  Sum_probs=104.0

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcC-----CcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP  217 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~  217 (308)
                      ++.+|.  +++++++++.++.+|++.|.+++     ++.+||+| +++++|+++.++++       ......++.++|.+
T Consensus         3 aG~iM~--~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~-------~~~~~~~v~~im~~   73 (127)
T d2ouxa2           3 AGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI-------VNDDDTLIADILNE   73 (127)
T ss_dssp             HHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT-------TSCTTSBHHHHSBS
T ss_pred             hhHhCC--CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccc-------cccccEEhhhhccC
Confidence            556787  79999999999999999998863     68899999 99999999999985       22336789999999


Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                      ++.++.+++++.++++.|.+++++++||+|++|+++|+||..||++++-..
T Consensus        74 ~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          74 RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999876543

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=1.1e-19  Score=135.71  Aligned_cols=117  Identities=18%  Similarity=0.225  Sum_probs=106.8

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCcee
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC  221 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~  221 (308)
                      .++++|.  +++.++++++++.+++++|.+.+.+++||++ +|+++|++|..|++ +     . ....++.++|..++.+
T Consensus         2 ~v~~~m~--~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~-~-----~-~~~~~v~~~~~~~~~~   72 (121)
T d1vr9a3           2 KVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL-D-----L-DLDSSVFNKVSLPDFF   72 (121)
T ss_dssp             BGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGT-T-----S-CTTSBSGGGCBCTTCC
T ss_pred             Cchhhhc--CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhh-h-----h-hccccccccccCccEE
Confidence            3678887  7899999999999999999999999999998 89999999999995 2     2 2246899999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          222 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       222 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                      +++++++.+++++|.+++..++||+|++|+++|+||..||++++...
T Consensus        73 v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          73 VHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             EETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             ECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988753

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=3.7e-20  Score=140.49  Aligned_cols=124  Identities=13%  Similarity=0.159  Sum_probs=106.6

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC----Ccccccccccccc
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----PADSTLVEKVMTP  217 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~----~~~~~~v~~~~~~  217 (308)
                      +++++|.+..++.++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++.+.....    .....+++++|.+
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~~   82 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT   82 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBC
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccccccc
Confidence            5778887768999999999999999999999999999998 8999999999999744432211    1224578899999


Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       218 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                      ++.++++++++.+++.+|.+++  .+||+|++|+++|+||.+||++++...
T Consensus        83 ~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          83 DIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             SCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence            9999999999999999998764  599999999999999999999987653

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=8.5e-21  Score=142.05  Aligned_cols=115  Identities=23%  Similarity=0.281  Sum_probs=87.3

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceee
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA  222 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v  222 (308)
                      ++++|.  ++++++++++++.+|++.|.+++++.+||++ +|+++|++|.+|++..       ....++.++|.+++.++
T Consensus         3 v~diM~--~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~-------~~~~~~~~~~~~~~~~v   73 (122)
T d2yzqa2           3 VKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN-------PDEEQLAMLVKRDVPVV   73 (122)
T ss_dssp             HHHHSE--ESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCEE
T ss_pred             cccccC--CCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhh-------hcccchhhccccceeec
Confidence            567787  6899999999999999999999999999999 8999999999999622       22457889999999999


Q ss_pred             cCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          223 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       223 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ++++++.+++++|.+++.+++||+|++|+++|+||..||+++++.
T Consensus        74 ~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          74 KENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             ETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             chhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHh
Confidence            999999999999999999999999999999999999999986553

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=5.9e-20  Score=140.99  Aligned_cols=125  Identities=18%  Similarity=0.133  Sum_probs=109.7

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcC-----CCccccccccccc
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-----LPADSTLVEKVMT  216 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~-----~~~~~~~v~~~~~  216 (308)
                      +++++|+  +++.++++++++.+|++.|.+++++++||++ +++++|++|..|+++.+....     ......+++++|.
T Consensus         3 ~V~~iMt--~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im~   80 (141)
T d3ddja1           3 PVKVFMS--TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMV   80 (141)
T ss_dssp             BHHHHSB--CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSB
T ss_pred             eeHHhCc--CCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHhC
Confidence            5788898  6899999999999999999999999999999 889999999999964433211     1123568899999


Q ss_pred             cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHh
Q 021709          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV  269 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~  269 (308)
                      +++.++.+++++.++++.|.+++.+++||+|++|+++|+||+.||++++....
T Consensus        81 ~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1          81 TNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887644

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=4.7e-20  Score=144.01  Aligned_cols=123  Identities=18%  Similarity=0.180  Sum_probs=106.1

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhc-----------------
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-----------------  202 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~-----------------  202 (308)
                      ..++.++|.  ++++++.+++++.+|++.|.+++++++||+| +|+++|++|..|++......                 
T Consensus         3 ~~~v~~~m~--r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~   80 (156)
T d2yzqa1           3 GVEIEPYYQ--RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWI   80 (156)
T ss_dssp             GCBSTTTSB--SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------
T ss_pred             CCCHHHHhc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhh
Confidence            346888998  7899999999999999999999999999998 89999999999985322111                 


Q ss_pred             ------------CCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          203 ------------NLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       203 ------------~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                                  .......++.++|.+++.++.+++++.++++.|.+++++++||+|++|+++|+||+.||++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          81 LESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             ----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence                        011124578899999999999999999999999999999999999999999999999999864

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.80  E-value=2.6e-19  Score=136.97  Aligned_cols=129  Identities=20%  Similarity=0.321  Sum_probs=106.9

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      .+++|+|.++++++.+++++.+|++.|.+++++++||+| +|+++|+++..|+++.........                
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~----------------   65 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRS----------------   65 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC------------------
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhh----------------
Confidence            378999999999999999999999999999999999998 699999999999987643321110                


Q ss_pred             ccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHH
Q 021709          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV  199 (308)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~  199 (308)
                                   ..........++.++|.  +++.++++++++.+++++|.+++.+++||+++|+++|++|.+|+++.+
T Consensus        66 -------------~~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~  130 (139)
T d2o16a3          66 -------------AQGDSLAFETPLFEVMH--TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIA  130 (139)
T ss_dssp             --------------------CCCBHHHHSC--SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHH
T ss_pred             -------------hcccccccccchhHhhc--cccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHH
Confidence                         00112234567888997  789999999999999999999999999999999999999999998554


Q ss_pred             H
Q 021709          200 I  200 (308)
Q Consensus       200 ~  200 (308)
                      .
T Consensus       131 ~  131 (139)
T d2o16a3         131 I  131 (139)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.5e-19  Score=136.42  Aligned_cols=129  Identities=14%  Similarity=0.117  Sum_probs=99.2

Q ss_pred             hcCCCcccc-cCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccc-----
Q 021709          139 MFRPSLSTI-IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV-----  211 (308)
Q Consensus       139 ~~~~~v~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v-----  211 (308)
                      +.+.++.++ +.+..++.++.+++++.+|++.|.+++++++||++ +|+++|++|.+|+++.+...........+     
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~   82 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM   82 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred             cccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhh
Confidence            344556554 22247899999999999999999999999999999 88999999999997444333222212222     


Q ss_pred             -ccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          212 -EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       212 -~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                       ...+..++.++++++++.++++.|.+.+.+++||+|++|+++|+||..||+++++.
T Consensus        83 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~~  139 (140)
T d2nyca1          83 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  139 (140)
T ss_dssp             HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             hhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHhc
Confidence             23334677899999999999999999999999999999999999999999998753

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1.2e-19  Score=139.61  Aligned_cols=117  Identities=22%  Similarity=0.322  Sum_probs=104.6

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcC-----CcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT  216 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~  216 (308)
                      +++.+|+  ++++++++++++.+|++.|.+++     ++.+||++ +|+++|+++.+|++       ......++.++|.
T Consensus         2 taG~iM~--~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~-------~~~~~~~v~~im~   72 (144)
T d2yvxa2           2 EAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI-------VADPRTRVAEIMN   72 (144)
T ss_dssp             SSGGGCB--SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHT-------TSCTTCBSTTTSB
T ss_pred             CcccccC--CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhh-------hcccccchHHhcc
Confidence            4678898  79999999999999999998763     67899999 89999999999995       2223568999999


Q ss_pred             cCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHH
Q 021709          217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT  268 (308)
Q Consensus       217 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~  268 (308)
                      +++.++++++++.+|++.|.+++.+++||||++|+++|+||..||++++...
T Consensus        73 ~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e  124 (144)
T d2yvxa2          73 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  124 (144)
T ss_dssp             SSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHH
T ss_pred             cCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999876543

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.80  E-value=4.2e-19  Score=138.11  Aligned_cols=129  Identities=14%  Similarity=0.131  Sum_probs=105.0

Q ss_pred             cccccCC-CCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCcccccccccc------
Q 021709          144 LSTIIPE-KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM------  215 (308)
Q Consensus       144 v~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~------  215 (308)
                      +.+++.+ .++++++.+++++.+|++.|.+++++++||++ +++++|++|.+|++..+..........++.++|      
T Consensus         3 l~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~   82 (153)
T d2ooxe2           3 LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPAN   82 (153)
T ss_dssp             GGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCC
T ss_pred             HHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeecc
Confidence            4444322 36899999999999999999999999999999 889999999999964433333333344555555      


Q ss_pred             ccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCC
Q 021709          216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT  272 (308)
Q Consensus       216 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~  272 (308)
                      ..++.++.+++++.++++.|.+++.+++||+|++|+++|+||+.||++++.......
T Consensus        83 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~~~~~  139 (153)
T d2ooxe2          83 FDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTT  139 (153)
T ss_dssp             SSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSCTTCC
T ss_pred             cCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcCcccc
Confidence            346678999999999999999999999999999999999999999999887654443

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.79  E-value=1.1e-18  Score=131.09  Aligned_cols=109  Identities=22%  Similarity=0.355  Sum_probs=94.0

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCH
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPI  228 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l  228 (308)
                      .+++++++++++.+|+++|.+++++++||+|   +++++|++|.+|++ ......    ......++..++.++++++++
T Consensus         5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~-~~~~~~----~~~~~~~~~~~~~~~~~~~~l   79 (126)
T d1zfja4           5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR-FISDYN----APISEHMTSEHLVTAAVGTDL   79 (126)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHH-HCSCSS----SBTTTSCCCSCCCCEETTCCH
T ss_pred             eCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHH-HhhccC----CceeeeeeccceeecCCCCCH
Confidence            4678999999999999999999999999997   57899999999995 332111    223344566788999999999


Q ss_pred             HHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          229 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       229 ~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      .+++++|.+++++++||||++|+++|+||+.||+++.
T Consensus        80 ~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          80 ETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI  116 (126)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHh
Confidence            9999999999999999999999999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=8.8e-20  Score=142.46  Aligned_cols=150  Identities=19%  Similarity=0.220  Sum_probs=106.2

Q ss_pred             cccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (308)
Q Consensus        39 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (308)
                      .+.+++++|.++++++++++++.+|+++|.+++++++||++ +|+++|+++..|+++.............       ...
T Consensus         2 ~~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~-------~~~   74 (156)
T d2yzqa1           2 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTEL-------AAS   74 (156)
T ss_dssp             GGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-----------------
T ss_pred             CCCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhccccccccccc-------ccc
Confidence            46789999999999999999999999999999999999997 6999999999998754221100000000       000


Q ss_pred             hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                      ..........+..............++.++|.  +++.++.+++++.++.+.|.+++++++||+| +|+++|++|.+|++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~--~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil  152 (156)
T d2yzqa1          75 SEEEWILESHPTLLFEKFELQLPNKPVAEIMT--RDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL  152 (156)
T ss_dssp             ----------------------CCCBGGGTCB--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHG
T ss_pred             hhhhhhhhhhhhhhHHHhhhcccCCEeehhcc--cCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHH
Confidence            00000000111122233334456678899998  7899999999999999999999999999999 89999999999997


Q ss_pred             H
Q 021709          197 M  197 (308)
Q Consensus       197 ~  197 (308)
                      +
T Consensus       153 ~  153 (156)
T d2yzqa1         153 K  153 (156)
T ss_dssp             G
T ss_pred             H
Confidence            3

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.78  E-value=6.8e-19  Score=131.12  Aligned_cols=118  Identities=19%  Similarity=0.245  Sum_probs=103.7

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhcc
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW  121 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (308)
                      +++++|.++++++++++++.+|++.|.+++++.+||.++|+++|+++..|+++.....                      
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~----------------------   58 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG----------------------   58 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT----------------------
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecccccccc----------------------
Confidence            4789999999999999999999999999999999999999999999999998653311                      


Q ss_pred             CCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHH
Q 021709          122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (308)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~  198 (308)
                                     ......++.++|.  .++.++++++++.+++++|.+++.+++||+++|+++|++|.+|++++
T Consensus        59 ---------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          59 ---------------DDLAEVKVWEVME--RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRA  118 (120)
T ss_dssp             ---------------CCTTTSBHHHHCB--CGGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ---------------ccccceeEeeecc--cccccccchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHhc
Confidence                           0022345788887  78999999999999999999999999999999999999999999844

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=7.5e-20  Score=137.05  Aligned_cols=119  Identities=17%  Similarity=0.181  Sum_probs=101.3

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      ++++++|.++++++.+++++.+|+++|.+++++.+||++ +|+++|+++..|++...+..                    
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~--------------------   60 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA--------------------   60 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG--------------------
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhc--------------------
Confidence            478999999999999999999999999999999999997 68999999999987542211                    


Q ss_pred             ccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHH
Q 021709          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM  197 (308)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~  197 (308)
                      ...                .....++++|.  +++.++++++++.+++++|.+++++++||+++++++|++|..|+++
T Consensus        61 ~~~----------------~~~~~v~~im~--~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~  120 (123)
T d1y5ha3          61 GLD----------------PNTATAGELAR--DSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIAR  120 (123)
T ss_dssp             TCC----------------TTTSBHHHHHT--TCCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             CCC----------------cccceEEEEee--ccceeeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHh
Confidence            000                11223567776  7899999999999999999999999999999999999999999973

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.78  E-value=1.1e-18  Score=131.24  Aligned_cols=121  Identities=15%  Similarity=0.199  Sum_probs=105.6

Q ss_pred             cccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        39 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      .+..|+++|.++++++.+++++.+|+++|.+++++.+||+++++++|+++..|+++....                    
T Consensus         2 ~~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~--------------------   61 (127)
T d2ef7a1           2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK--------------------   61 (127)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT--------------------
T ss_pred             CccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHh--------------------
Confidence            356899999999999999999999999999999999999999999999999999765221                    


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~  197 (308)
                                        ......++.++|.  +++.++++++++.++++.|.+++.+++||++ +|+++|++|..|+++
T Consensus        62 ------------------~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~  121 (127)
T d2ef7a1          62 ------------------GKSLETKAEEFMT--ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITR  121 (127)
T ss_dssp             ------------------TCCTTCBGGGTSE--ECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             ------------------hccccchhhhhhh--hhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHH
Confidence                              0122345788887  7899999999999999999999999999998 899999999999974


Q ss_pred             HH
Q 021709          198 RV  199 (308)
Q Consensus       198 ~~  199 (308)
                      .+
T Consensus       122 ~i  123 (127)
T d2ef7a1         122 AI  123 (127)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.78  E-value=5.7e-19  Score=132.89  Aligned_cols=121  Identities=17%  Similarity=0.217  Sum_probs=102.8

Q ss_pred             ccccccc---cCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        42 ~v~~im~---~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      +++++|.   ++++++++++++.+|+++|.+++++++||+++++++|+++..|+++.....                   
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~-------------------   63 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL-------------------   63 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS-------------------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhh-------------------
Confidence            4667775   478999999999999999999999999999999999999999997642210                   


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~  198 (308)
                         +              ......++.++|.  .++.++.+++++.++++.|.+++++++||+++|+++|+||.+|++++
T Consensus        64 ---~--------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          64 ---D--------------KPVKDTQVKEIMT--RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             ---S--------------SCGGGSBGGGTSB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ---c--------------ccccceeEeeecc--ceeEEeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHH
Confidence               0              0012345788887  78999999999999999999999999999999999999999999866


Q ss_pred             HH
Q 021709          199 VI  200 (308)
Q Consensus       199 ~~  200 (308)
                      ++
T Consensus       125 ~i  126 (127)
T d2rc3a1         125 AI  126 (127)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.78  E-value=1.3e-18  Score=131.72  Aligned_cols=119  Identities=21%  Similarity=0.339  Sum_probs=102.7

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCc
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP  219 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~  219 (308)
                      +++++|.  ++++++++++++.++++.|.+++++++||++   +++++|+++..|++ +.+..+...  ......+..++
T Consensus         2 ~V~dim~--~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~-~~~~~~~~~--~~~~~~~~~~~   76 (131)
T d2riha1           2 RTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVAQRLDL--DGPAMPIANSP   76 (131)
T ss_dssp             BGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHH-HHHHTTCCT--TSBSGGGCBCC
T ss_pred             CHHHhcc--CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccc-ccccccccc--ccccccccccc
Confidence            4788997  7899999999999999999999999999994   57899999999996 555444432  23444556788


Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          220 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       220 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                      .++.+++++.+++++|.+++++++||+|++|+++|+||..||+++..
T Consensus        77 ~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1          77 ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             eeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence            89999999999999999999999999999999999999999998644

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=4.2e-18  Score=131.09  Aligned_cols=121  Identities=21%  Similarity=0.331  Sum_probs=101.7

Q ss_pred             cccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCC--------------Cccc
Q 021709          144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL--------------PADS  208 (308)
Q Consensus       144 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~--------------~~~~  208 (308)
                      +.++|.  .+++++++++++.+|++.|.+++++++||+| +++++|++|.+|+++.......              ....
T Consensus         6 v~~~m~--~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (145)
T d1o50a3           6 VCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   83 (145)
T ss_dssp             HTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             hHHhCC--CCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhccc
Confidence            556776  7899999999999999999999999999999 8999999999999744432210              1112


Q ss_pred             cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       209 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      .+++.+| .++.++.+++++.+|+++|.+++.+++||+|++|+++|+||..||++++..
T Consensus        84 ~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          84 KNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             cCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            3344454 477899999999999999999999999999999999999999999997765

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=2.7e-18  Score=130.01  Aligned_cols=121  Identities=21%  Similarity=0.279  Sum_probs=105.3

Q ss_pred             ccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 021709           40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE  118 (308)
Q Consensus        40 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (308)
                      +.+|+++|.++++++++++++.+|++.|.+++++.+||+| +|+++|+++..|+++.....                   
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~-------------------   64 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP-------------------   64 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT-------------------
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhc-------------------
Confidence            3589999999999999999999999999999999999998 68999999999998652210                   


Q ss_pred             hccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHH
Q 021709          119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR  198 (308)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~  198 (308)
                                        ......++.++|.  +++.++++++++.++++.|.+++++++||.++|+++|++|.+|+++.
T Consensus        65 ------------------~~~~~~~v~~im~--~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil~a  124 (132)
T d2yzia1          65 ------------------GLPYDIPVERIMT--RNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEA  124 (132)
T ss_dssp             ------------------CCCTTSBGGGTCB--CSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             ------------------cCccceeEeeccc--ccccccCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence                              0112346888997  78999999999999999999999999999889999999999999844


Q ss_pred             H
Q 021709          199 V  199 (308)
Q Consensus       199 ~  199 (308)
                      +
T Consensus       125 ~  125 (132)
T d2yzia1         125 S  125 (132)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.9e-18  Score=135.13  Aligned_cols=132  Identities=17%  Similarity=0.156  Sum_probs=109.2

Q ss_pred             hcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhcCCC----c------
Q 021709          139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLP----A------  206 (308)
Q Consensus       139 ~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~----~------  206 (308)
                      +...++.|+|.+..++++++.++++.+|++.|.+++++++||++  +++++|++|.+|++..+......    .      
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~   89 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH   89 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhh
Confidence            34456899997667899999999999999999999999999997  68999999999997444322110    0      


Q ss_pred             ----cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEC-CCCcEEEEEEhhHHHHHHHHHhc
Q 021709          207 ----DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RDGDVVDVVDVIHITHAAVATVG  270 (308)
Q Consensus       207 ----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~~~~iGiit~~di~~~~~~~~~  270 (308)
                          .......+|..++.++++++++.+++++|.+++.+++||+| ++|+++|+||++||++++..+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~~  158 (159)
T d2v8qe2          90 KIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFIT  158 (159)
T ss_dssp             BHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSC
T ss_pred             hcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHcC
Confidence                01233467778899999999999999999999999999998 56899999999999998876543

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.76  E-value=8.6e-19  Score=133.35  Aligned_cols=119  Identities=27%  Similarity=0.319  Sum_probs=103.8

Q ss_pred             CcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEeeHHHHHHHHHhcCCC----------ccccccc
Q 021709          143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVE  212 (308)
Q Consensus       143 ~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~----------~~~~~v~  212 (308)
                      +++++|.  ++++++++++++.+|++.|.+++++++||+++ +++|++|..|++ ..+.....          ....+++
T Consensus         2 ~V~~lM~--~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-~lvg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~   77 (135)
T d3ddja2           2 NIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVANE-KIEGLLTTRDLL-STVESYCKDSCSQGDLYHISTTPII   77 (135)
T ss_dssp             SGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEESS-SEEEEEEHHHHH-GGGTTCC---CCHHHHHHHHTSBGG
T ss_pred             EeeEEee--CCCeEECCCCcHHHHHHHHHHhCCeEEEEEec-ceeceeeccchh-hhhccccccchhhhhccccccCCHH
Confidence            4788897  68999999999999999999999999999864 699999999996 44322211          1246789


Q ss_pred             cccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       213 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      ++|..++.++++++++.+++++|.+++++++||+|++|+++|+||+.||++++
T Consensus        78 ~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          78 DYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             GTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG
T ss_pred             HHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999754

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=3.9e-19  Score=132.85  Aligned_cols=114  Identities=30%  Similarity=0.431  Sum_probs=85.5

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (308)
                      +++++|.++++++++++++.+|++.|.+++++.+||++ +|+++|+++..+++..                         
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~-------------------------   56 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN-------------------------   56 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC----------------------------
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhh-------------------------
Confidence            68899999999999999999999999999999999998 6999999999998743                         


Q ss_pred             cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~  199 (308)
                                        ....++.++|.  ++++++++++++.+++++|.+++.+++||+| +|+++|++|.+|+++++
T Consensus        57 ------------------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          57 ------------------PDEEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             -------------------------CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             ------------------hcccchhhccc--cceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence                              11234677887  7899999999999999999999999999999 89999999999998554


Q ss_pred             H
Q 021709          200 I  200 (308)
Q Consensus       200 ~  200 (308)
                      +
T Consensus       117 ~  117 (122)
T d2yzqa2         117 F  117 (122)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.4e-18  Score=133.90  Aligned_cols=116  Identities=15%  Similarity=0.144  Sum_probs=98.2

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHHhcCCCccccc------cccccccCceeecC
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL------VEKVMTPNPECATI  224 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~------v~~~~~~~~~~v~~  224 (308)
                      +++.++.+++++.+|+++|.+++++++||++ +|+++|++|..|++..+..........+      ....+..++.++.+
T Consensus        20 ~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~   99 (145)
T d2v8qe1          20 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYL   99 (145)
T ss_dssp             SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCCSCCEECT
T ss_pred             CCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccCCCeEECC
Confidence            5789999999999999999999999999999 8899999999999633333222222222      33445678889999


Q ss_pred             CCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHH
Q 021709          225 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA  267 (308)
Q Consensus       225 ~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~  267 (308)
                      ++++.+++++|.+++.+++||+|++|+++|+||..||+++++.
T Consensus       100 ~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1         100 HETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.75  E-value=6.9e-18  Score=131.89  Aligned_cols=123  Identities=14%  Similarity=0.044  Sum_probs=104.6

Q ss_pred             CCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHHHHHHhcC--------------
Q 021709          141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN--------------  203 (308)
Q Consensus       141 ~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~~~~~~~~--------------  203 (308)
                      ..+++++|.  ++++++++++++.++++.|.+++++++||++   ++.++|++|..|++..+....              
T Consensus        10 ~~~V~diM~--~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~   87 (160)
T d2d4za3          10 NIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTL   87 (160)
T ss_dssp             SCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBH
T ss_pred             ceEHHHhcC--CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcccc
Confidence            446899998  7999999999999999999999999999997   368999999999974443210              


Q ss_pred             ----------CCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHH
Q 021709          204 ----------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV  266 (308)
Q Consensus       204 ----------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~  266 (308)
                                .......+..+|.+.+.++.+++++.+++++|.+.+++++||+| +|+++|+||++||++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          88 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             chhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence                      01112345668889999999999999999999999999999998 699999999999999763

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=4.8e-18  Score=130.11  Aligned_cols=126  Identities=21%  Similarity=0.413  Sum_probs=106.3

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      .+|+++|.++++++++++++.+|+++|.+++++++||++ +++++|+++..|+++.........                
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~----------------   65 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKL----------------   65 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHT----------------
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcccccc----------------
Confidence            378999999999999999999999999999999999998 689999999999986644322110                


Q ss_pred             ccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHH
Q 021709          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (308)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~  198 (308)
                                     ........++.++|.  ++++++.+++++.++++.|.+++.+++||+| +|+++|+||.+|+++.
T Consensus        66 ---------------~~~~~~~~~v~~im~--~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~  128 (141)
T d3ddja1          66 ---------------DPDYFYGKVVKDVMV--TNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA  128 (141)
T ss_dssp             ---------------CTHHHHTCBHHHHSB--CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             ---------------ccccccCCCHHHHhC--cccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHH
Confidence                           001123456788887  7899999999999999999999999999998 8999999999999844


Q ss_pred             H
Q 021709          199 V  199 (308)
Q Consensus       199 ~  199 (308)
                      +
T Consensus       129 l  129 (141)
T d3ddja1         129 L  129 (141)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=7.5e-18  Score=129.15  Aligned_cols=118  Identities=20%  Similarity=0.205  Sum_probs=103.2

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      .+++++|.+++.++++++++.+|++.|.+++++.+||++ +|+++|+++..|+++......                   
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~-------------------   63 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRN-------------------   63 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGC-------------------
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhc-------------------
Confidence            478999999999999999999999999999999999998 589999999999986522100                   


Q ss_pred             ccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                       ......++.++|.  .+++++++++++.+++++|.+++.+++||+| +|+++|++|..|++
T Consensus        64 -----------------~~~~~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil  122 (142)
T d1pvma4          64 -----------------KKPDEVPIRLVMR--KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS  122 (142)
T ss_dssp             -----------------CCGGGSBGGGTSB--SSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHT
T ss_pred             -----------------ccccccccccccc--cccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHH
Confidence                             0012345788887  7899999999999999999999999999999 88999999999997

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.73  E-value=1.3e-16  Score=124.41  Aligned_cols=146  Identities=15%  Similarity=0.115  Sum_probs=110.1

Q ss_pred             CCcccccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeC---CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021709           37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA  113 (308)
Q Consensus        37 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~  113 (308)
                      +..+.+++++|.++++++++++++.+|+++|.+++++++||+++   +.++|+++..+++.........           
T Consensus         7 ~~~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~-----------   75 (160)
T d2d4za3           7 NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISA-----------   75 (160)
T ss_dssp             CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHT-----------
T ss_pred             CccceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhcccc-----------
Confidence            34467999999999999999999999999999999999999972   6899999999998764432210           


Q ss_pred             hhhhhhccCCCCCChhHHHHHHHH--HhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEee
Q 021709          114 VEGVEKHWGTSISGPNTFIETLRE--RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILT  191 (308)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Givt  191 (308)
                         .....................  ......+.++|.  ..++++.+++++.+++++|.+.+++++||+++|+++|+||
T Consensus        76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt  150 (160)
T d2d4za3          76 ---YRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRID--QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVA  150 (160)
T ss_dssp             ---TSSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEE--CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEE
T ss_pred             ---ccccchhhccccchhhhhhhhhcccccceeeeccc--CCCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEE
Confidence               000111111112222222111  122344567777  7899999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 021709          192 SKDILMR  198 (308)
Q Consensus       192 ~~dl~~~  198 (308)
                      .+|+++.
T Consensus       151 ~~Di~k~  157 (160)
T d2d4za3         151 LAEIQAA  157 (160)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999743

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.73  E-value=8.8e-18  Score=133.93  Aligned_cols=141  Identities=16%  Similarity=0.162  Sum_probs=113.2

Q ss_pred             HHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHHHHHHHHHhc---CCCc
Q 021709          132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQ---NLPA  206 (308)
Q Consensus       132 ~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~---~~~~  206 (308)
                      ...+...+...++.++|.++.++++++++.++.+|++.|.+++++++||++  +++++|++|..|++..+...   ....
T Consensus        10 ~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~   89 (179)
T d2ooxe1          10 LKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFP   89 (179)
T ss_dssp             HHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCG
T ss_pred             HHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccch
Confidence            344455556667889998667899999999999999999999999999998  47999999999997544321   0000


Q ss_pred             ---------------cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCC-----cEEEEEEhhHHHHHHH
Q 021709          207 ---------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG-----DVVDVVDVIHITHAAV  266 (308)
Q Consensus       207 ---------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~-----~~iGiit~~di~~~~~  266 (308)
                                     ........|.+++.++.+++++.+++++|.+++.+++||+|++|     +++|+||+.||++++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1          90 EAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             GGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence                           01123345678899999999999999999999999999998654     6999999999999887


Q ss_pred             HHhcCC
Q 021709          267 ATVGNT  272 (308)
Q Consensus       267 ~~~~~~  272 (308)
                      .+.++.
T Consensus       170 ~~~~~~  175 (179)
T d2ooxe1         170 MNCKET  175 (179)
T ss_dssp             TTCGGG
T ss_pred             HhhhHh
Confidence            766653

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1.5e-17  Score=123.91  Aligned_cols=115  Identities=19%  Similarity=0.156  Sum_probs=102.6

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK  119 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      ++++++|.+++.++++++++.+|++.|.+++.+.+||++ +|+++|+++..|+++.                        
T Consensus         1 m~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~------------------------   56 (121)
T d1vr9a3           1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL------------------------   56 (121)
T ss_dssp             CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS------------------------
T ss_pred             CCchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh------------------------
Confidence            368999999999999999999999999999999999997 6999999999998632                        


Q ss_pred             ccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHH
Q 021709          120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR  198 (308)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~  198 (308)
                                         ....++.++|.  .++.++++++++.+++++|.+++..++||++ +|+++|++|..|+++.
T Consensus        57 -------------------~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~  115 (121)
T d1vr9a3          57 -------------------DLDSSVFNKVS--LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEA  115 (121)
T ss_dssp             -------------------CTTSBSGGGCB--CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             -------------------hcccccccccc--CccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHH
Confidence                               12346788887  6788999999999999999999999999998 8999999999999855


Q ss_pred             HH
Q 021709          199 VI  200 (308)
Q Consensus       199 ~~  200 (308)
                      +.
T Consensus       116 l~  117 (121)
T d1vr9a3         116 LI  117 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.72  E-value=2.4e-19  Score=133.50  Aligned_cols=110  Identities=19%  Similarity=0.286  Sum_probs=59.7

Q ss_pred             CceeEeCCCCcHHHHHHHHHHcCCcEEEEee----CCEEEEEeeHHHHHHHHHhcCCCcccccccccc--ccCceeecCC
Q 021709          152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVM--TPNPECATID  225 (308)
Q Consensus       152 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~----~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~--~~~~~~v~~~  225 (308)
                      .+++++++++++.+|+++|.+++++++||++    +++++|++|.+|+. ........   .++..++  .+++.++.++
T Consensus         4 ~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~-~~~~~~~~---~~~~~~~~~~~~~~~v~~~   79 (120)
T d1jr1a4           4 TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID-FLKEEEHD---RFLEEIMTKREDLVVAPAG   79 (120)
T ss_dssp             CTTCC----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCCEETT
T ss_pred             cCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeee-ehhccccC---ceeEEEEeeccCceEECCC
Confidence            4677999999999999999999999999997    46899999999983 44433332   3444544  3467899999


Q ss_pred             CCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHH
Q 021709          226 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA  265 (308)
Q Consensus       226 ~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~  265 (308)
                      +++.+|+++|.+++++++||+|++|+++|+||+.||+++.
T Consensus        80 ~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          80 ITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             CCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence            9999999999999999999999999999999999999853

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4e-17  Score=128.86  Aligned_cols=128  Identities=13%  Similarity=0.169  Sum_probs=102.8

Q ss_pred             cccccCCCC--c--eeEeCCCCcHHHHHHHHHHcCCcEEEEee---CCEEEEEeeHHHHHHHHHhcC-------------
Q 021709          144 LSTIIPEKS--K--VVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN-------------  203 (308)
Q Consensus       144 v~~~~~~~~--~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~~~Givt~~dl~~~~~~~~-------------  203 (308)
                      ++|+|.+..  +  .+.+.++.++.++.++|.+++++++||++   +++++|++|.+|++..+....             
T Consensus         5 a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~   84 (169)
T d2j9la1           5 AMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIY   84 (169)
T ss_dssp             HHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEE
T ss_pred             hhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhh
Confidence            456775432  1  25567888999999999999999999993   678999999999974443210             


Q ss_pred             ----------CCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHHHHHHHHhcCC
Q 021709          204 ----------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNT  272 (308)
Q Consensus       204 ----------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~~~~~~~~~~~  272 (308)
                                ......+++++|.+++.++.+++++.+++++|.+++.+++||+| +|+++|+||+.||++++....+..
T Consensus        85 ~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~~~~~  162 (169)
T d2j9la1          85 FTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMANQD  162 (169)
T ss_dssp             CSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC--
T ss_pred             hcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHhcCC
Confidence                      11113467889999999999999999999999999999999987 799999999999999888766553

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.72  E-value=1.2e-17  Score=125.45  Aligned_cols=112  Identities=13%  Similarity=0.216  Sum_probs=99.0

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhC-----CCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~-----~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      +++.+|.+++++++++.++.+|++.|.++     .++.+||+| +++++|+++..+++..                    
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~--------------------   61 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN--------------------   61 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------------------
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc--------------------
Confidence            56789999999999999999999999876     478999998 6999999999888532                    


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHH
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (308)
                                             ....++.++|.  ++++++++++++.+++++|.+++++++||+| +|+++|+||..|
T Consensus        62 -----------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~D  116 (127)
T d2ouxa2          62 -----------------------DDDTLIADILN--ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDD  116 (127)
T ss_dssp             -----------------------CTTSBHHHHSB--SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred             -----------------------cccEEhhhhcc--CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHH
Confidence                                   12345888998  7899999999999999999999999999998 899999999999


Q ss_pred             HHHH
Q 021709          195 ILMR  198 (308)
Q Consensus       195 l~~~  198 (308)
                      ++..
T Consensus       117 il~~  120 (127)
T d2ouxa2         117 IIDV  120 (127)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9743

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=1.7e-17  Score=127.46  Aligned_cols=113  Identities=19%  Similarity=0.223  Sum_probs=100.1

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCC-----CcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~-----~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      +++.+|.++++++++++++.+|+++|.+++     +..+||++ +|+++|+++.+++...                    
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~--------------------   61 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------------   61 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS--------------------
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc--------------------
Confidence            578899999999999999999999998764     78899998 6999999999998532                    


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHH
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD  194 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~d  194 (308)
                                             ....++.++|.  +++.++.+++++.+|++.|.+++++++||+| +|+++|+||.+|
T Consensus        62 -----------------------~~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~D  116 (144)
T d2yvxa2          62 -----------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD  116 (144)
T ss_dssp             -----------------------CTTCBSTTTSB--SSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHH
T ss_pred             -----------------------ccccchHHhcc--cCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHH
Confidence                                   22356888998  7899999999999999999999999999999 799999999999


Q ss_pred             HHHHH
Q 021709          195 ILMRV  199 (308)
Q Consensus       195 l~~~~  199 (308)
                      +++.+
T Consensus       117 il~~l  121 (144)
T d2yvxa2         117 VLDVL  121 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97443

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=6e-17  Score=124.46  Aligned_cols=134  Identities=18%  Similarity=0.212  Sum_probs=101.1

Q ss_pred             ccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 021709           42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (308)
Q Consensus        42 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (308)
                      .+.++|.++++++.+++++.+|++.|.+++++++||+| +|+++|+++..|+++..........                
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~----------------   68 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFI----------------   68 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCC----------------
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhccccccc----------------
Confidence            46678999999999999999999999999999999998 7999999999999876443221100                


Q ss_pred             cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~  199 (308)
                            ............+...++.++|   .+++++.+++++.+|+++|.+++.+++||++ +|+++|+||.+|+++.+
T Consensus        69 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l  139 (145)
T d1o50a3          69 ------PKEELIRSSMKRLIAKNASEIM---LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL  139 (145)
T ss_dssp             ------C-------CCCCCSSCBHHHHC---BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             ------chhHHHHhhhhhccccCHHHHc---CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHH
Confidence                  0000000000011223344555   3578899999999999999999999999998 89999999999998444


Q ss_pred             H
Q 021709          200 I  200 (308)
Q Consensus       200 ~  200 (308)
                      .
T Consensus       140 ~  140 (145)
T d1o50a3         140 W  140 (145)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.69  E-value=5.4e-17  Score=123.21  Aligned_cols=126  Identities=18%  Similarity=0.258  Sum_probs=103.4

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH  120 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (308)
                      .+++++|.++++++++++++.+|+++|.+++++++||+++ +++|+++..++++.......                   
T Consensus         1 m~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-~lvg~~~~~~~~~~~~~~~~-------------------   60 (135)
T d3ddja2           1 MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE-KIEGLLTTRDLLSTVESYCK-------------------   60 (135)
T ss_dssp             SSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS-SEEEEEEHHHHHGGGTTCC--------------------
T ss_pred             CEeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec-ceeceeeccchhhhhccccc-------------------
Confidence            3689999999999999999999999999999999999854 69999999998765321100                   


Q ss_pred             cCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                              ..............+++++|.  .++.++++++++.+++++|.+++++++||+| +|+++|+||.+|++
T Consensus        61 --------~~~~~~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil  127 (135)
T d3ddja2          61 --------DSCSQGDLYHISTTPIIDYMT--PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL  127 (135)
T ss_dssp             ----------CCHHHHHHHHTSBGGGTSE--ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHG
T ss_pred             --------cchhhhhccccccCCHHHHhC--CccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHH
Confidence                    000011122234567899997  7899999999999999999999999999999 89999999999997

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.67  E-value=1.7e-16  Score=118.90  Aligned_cols=110  Identities=18%  Similarity=0.287  Sum_probs=91.5

Q ss_pred             cccCceEEeCCCcHHHHHHHhHhCCCcEeeEee---CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCC
Q 021709           47 MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGT  123 (308)
Q Consensus        47 m~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (308)
                      |..+++++++++++.+|+++|.+++++++||+|   +++++|+++..|+....                           
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~---------------------------   55 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS---------------------------   55 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS---------------------------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh---------------------------
Confidence            567889999999999999999999999999997   47899999999986430                           


Q ss_pred             CCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHH
Q 021709          124 SISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV  199 (308)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~  199 (308)
                                     ....+....+. ..++++++++.++.+++++|.+++++++||++ +|+++|+||.+|+++..
T Consensus        56 ---------------~~~~~~~~~~~-~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          56 ---------------DYNAPISEHMT-SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI  116 (126)
T ss_dssp             ---------------CSSSBTTTSCC-CSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             ---------------ccCCceeeeee-ccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHh
Confidence                           11122223332 16788999999999999999999999999998 89999999999998443

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.67  E-value=3.8e-16  Score=117.76  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=96.7

Q ss_pred             cccccccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee---CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709           41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (308)
Q Consensus        41 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (308)
                      .+++++|.++++++++++++.+|++.|.+++++++||++   +++++|+++..++++.....                  
T Consensus         1 ~~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~------------------   62 (131)
T d2riha1           1 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR------------------   62 (131)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT------------------
T ss_pred             CCHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc------------------
Confidence            368999999999999999999999999999999999994   48899999999997652210                  


Q ss_pred             hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                           .........+.  .++.++.+++++.+++++|.+++++++||++ +|+++|++|..|++
T Consensus        63 ---------------------~~~~~~~~~~~--~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll  119 (131)
T d2riha1          63 ---------------------LDLDGPAMPIA--NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC  119 (131)
T ss_dssp             ---------------------CCTTSBSGGGC--BCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             ---------------------ccccccccccc--ccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHH
Confidence                                 11111222333  5678899999999999999999999999998 89999999999997

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=3.6e-17  Score=123.71  Aligned_cols=123  Identities=13%  Similarity=0.179  Sum_probs=100.3

Q ss_pred             ccccccc--ccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709           41 TPVSKVM--TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (308)
Q Consensus        41 ~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (308)
                      .+++++|  .++++++.++.++.+|+++|.+++++++||+| +|+++|+++..|+++......                 
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~-----------------   64 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLE-----------------   64 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSS-----------------
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccc-----------------
Confidence            5788999  56899999999999999999999999999998 699999999999987633110                 


Q ss_pred             hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                          .    ..       .......++.++|.  .++.++++++++.++++.|.++  +.+||+| +|+++|+||.+|++
T Consensus        65 ----~----~~-------~~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd~~~~~~Givt~~dil  125 (132)
T d1yava3          65 ----R----IE-------FEKLDQITVEEVML--TDIPRLHINDPIMKGFGMVINN--GFVCVENDEQVFEGIFTRRVVL  125 (132)
T ss_dssp             ----S----BC-------GGGTTTSBHHHHSB--CSCCEEETTSBHHHHHHHTTTC--SEEEEECTTCBEEEEEEHHHHH
T ss_pred             ----c----cc-------cccccccccccccc--ccccccccchhHHHHHHHHHhC--CEEEEEccCCEEEEEEEHHHHH
Confidence                0    00       01123456778887  7899999999999999999865  4599998 89999999999998


Q ss_pred             HHH
Q 021709          197 MRV  199 (308)
Q Consensus       197 ~~~  199 (308)
                      +.+
T Consensus       126 ~~l  128 (132)
T d1yava3         126 KEL  128 (132)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.4e-15  Score=115.94  Aligned_cols=123  Identities=20%  Similarity=0.211  Sum_probs=92.2

Q ss_pred             ccccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccCCC
Q 021709           46 VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS  124 (308)
Q Consensus        46 im~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (308)
                      +|.++++++.+++++.+|++.|.+++++++||++ +|+++|+++..|+++..........                    
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~--------------------   73 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL--------------------   73 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----C--------------------
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcccccc--------------------
Confidence            4678999999999999999999999999999998 6899999999999876432111000                    


Q ss_pred             CCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHHHHH
Q 021709          125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI  200 (308)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~  200 (308)
                       .  ........       ....+.  .++.++++++++.++++.|.+++.+++||+| +|+++|+||.+|+++.++
T Consensus        74 -~--~~~~~~~~-------~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          74 -S--LSVGEALM-------RRSDDF--EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             -C--SBHHHHHH-------HCC--------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -c--cchhhhhh-------hhhhcc--cccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence             0  00000000       111122  5688999999999999999999999999998 999999999999986554

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.63  E-value=1.6e-17  Score=123.53  Aligned_cols=111  Identities=9%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             cccCceEEeCCCcHHHHHHHhHhCCCcEeeEee----CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhccC
Q 021709           47 MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE----NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG  122 (308)
Q Consensus        47 m~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd----~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (308)
                      |.++++++++++++.+|+++|.+++++++||+|    +++++|++|.+|+.......                       
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~-----------------------   58 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE-----------------------   58 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC--------------------------------------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc-----------------------
Confidence            557788999999999999999999999999997    37899999999974221100                       


Q ss_pred             CCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHHH
Q 021709          123 TSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM  197 (308)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~  197 (308)
                                       ...+...++...+++.++.+++++.+|+++|.+++++++||++ +|+++|+||.+|+++
T Consensus        59 -----------------~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k  117 (120)
T d1jr1a4          59 -----------------HDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKK  117 (120)
T ss_dssp             ------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHH
T ss_pred             -----------------cCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhh
Confidence                             1112334444346789999999999999999999999999999 899999999999973

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.4e-15  Score=118.48  Aligned_cols=136  Identities=15%  Similarity=0.103  Sum_probs=101.1

Q ss_pred             ccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           40 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        40 ~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      ..+++|+|.  .+++++++++++.+|++.|.++++.++||++  +++++|+++..|++............          
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~----------   81 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALV----------   81 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTT----------
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccc----------
Confidence            458899994  5789999999999999999999999999997  48999999999998765432211100          


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee--CCEEEEEeeHH
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSK  193 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~Givt~~  193 (308)
                            ............. .     ....++|.  .+++++++++++.+++++|.+++.+++||++  +|+++|+||.+
T Consensus        82 ------~~~~~~~~~~~~~-~-----~~~~~~~~--~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~  147 (159)
T d2v8qe2          82 ------QIYELEEHKIETW-R-----EVYLQDSF--KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK  147 (159)
T ss_dssp             ------TCCCGGGCBHHHH-H-----HHHSSSSC--CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHH
T ss_pred             ------hhhhhhhhhcccc-c-----ceeeeeec--cceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHH
Confidence                  0000000000000 0     11344554  6889999999999999999999999999997  57999999999


Q ss_pred             HHHHHH
Q 021709          194 DILMRV  199 (308)
Q Consensus       194 dl~~~~  199 (308)
                      |+++.+
T Consensus       148 dilk~l  153 (159)
T d2v8qe2         148 RILKFL  153 (159)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998443

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.60  E-value=2.3e-15  Score=116.59  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=95.6

Q ss_pred             ccccccc---cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 021709           42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV  117 (308)
Q Consensus        42 ~v~~im~---~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~~  117 (308)
                      ++++++.   ++++++.++.++.+|+++|.+++++++||++ +|+++|+++..|+++.......                
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~----------------   65 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY----------------   65 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCG----------------
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccc----------------
Confidence            3444442   5899999999999999999999999999998 6899999999999765321100                


Q ss_pred             hhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHHH
Q 021709          118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL  196 (308)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~  196 (308)
                                 ........+.+.   ....+.  .++.++.+++++.++++.|.+++.+++||+| +|+++|++|.+|++
T Consensus        66 -----------~~~~~~v~~~~~---~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil  129 (153)
T d2ooxe2          66 -----------SNLDLSVGEALL---KRPANF--DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL  129 (153)
T ss_dssp             -----------GGGGSBHHHHHH---TSCCCS--SCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHH
T ss_pred             -----------cccccchhhhee---eeeccc--CCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHH
Confidence                       000000111111   112222  5788999999999999999999999999998 89999999999998


Q ss_pred             HHHH
Q 021709          197 MRVI  200 (308)
Q Consensus       197 ~~~~  200 (308)
                      +.+.
T Consensus       130 ~~~~  133 (153)
T d2ooxe2         130 NYII  133 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=4.2e-16  Score=119.65  Aligned_cols=130  Identities=18%  Similarity=0.219  Sum_probs=97.9

Q ss_pred             ccccccc---ccCceEEeCCCcHHHHHHHhHhCCCcEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021709           41 TPVSKVM---TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG  116 (308)
Q Consensus        41 ~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~~  116 (308)
                      .++++++   .++++++.+++++.+|++.|.+++++++||++ +|+++|+++..|++......                 
T Consensus         9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~-----------------   71 (145)
T d2v8qe1           9 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK-----------------   71 (145)
T ss_dssp             SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS-----------------
T ss_pred             CCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcc-----------------
Confidence            3555553   36789999999999999999999999999998 68999999999986542110                 


Q ss_pred             hhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CCEEEEEeeHHHH
Q 021709          117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI  195 (308)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~Givt~~dl  195 (308)
                          .......  .    ....   ......+.  .++.++.+++++.++++.|.+++.+++||+| +|+++|+||.+|+
T Consensus        72 ----~~~~~~~--~----v~~~---~~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~di  136 (145)
T d2v8qe1          72 ----TYNNLDV--S----VTKA---LQHRSHYF--EGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDI  136 (145)
T ss_dssp             ----CCCCCSS--B----HHHH---GGGCCSCC--CSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHH
T ss_pred             ----cccchhh--h----hhhc---cchhhhcc--CCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHH
Confidence                0000000  0    0000   11223343  6788999999999999999999999999998 8999999999999


Q ss_pred             HHHHHhc
Q 021709          196 LMRVISQ  202 (308)
Q Consensus       196 ~~~~~~~  202 (308)
                      ++.++..
T Consensus       137 i~~lv~~  143 (145)
T d2v8qe1         137 LQALVLT  143 (145)
T ss_dssp             HHHHHSS
T ss_pred             HHHHHhc
Confidence            8666543

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.58  E-value=4.6e-15  Score=117.83  Aligned_cols=142  Identities=13%  Similarity=0.066  Sum_probs=101.9

Q ss_pred             ccccccccc--cCceEEeCCCcHHHHHHHhHhCCCcEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021709           40 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE  115 (308)
Q Consensus        40 ~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~-~~~vGivs~~dll~~~~~~~~~~~~~~~~~~~~~~  115 (308)
                      ..++.|+|.  .++++++++.++.+|+..|.+++++++||++ + ++++|+++..|+++.............        
T Consensus        19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~--------   90 (179)
T d2ooxe1          19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPE--------   90 (179)
T ss_dssp             HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGG--------
T ss_pred             CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchh--------
Confidence            447899995  5789999999999999999999999999998 4 799999999999977554322110000        


Q ss_pred             hhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEee-CC-----EEEEE
Q 021709          116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN-----KPRGI  189 (308)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~-----~~~Gi  189 (308)
                       ...   .............      ......|.  .+++++++++++.+++..|.+++.+++||++ +|     +++|+
T Consensus        91 -~~~---~~~~~~~~~~~~~------~~~~~~~~--~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgi  158 (179)
T d2ooxe1          91 -AIA---EIDKFRLLGLREV------ERKIGAIP--PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV  158 (179)
T ss_dssp             -GGG---GGGGSBHHHHHHH------HHHTTCSC--SSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEE
T ss_pred             -hhh---hhhccchhhhccc------ceeeeecc--cCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEE
Confidence             000   0000000000000      11223454  7899999999999999999999999999998 43     79999


Q ss_pred             eeHHHHHHHHHhc
Q 021709          190 LTSKDILMRVISQ  202 (308)
Q Consensus       190 vt~~dl~~~~~~~  202 (308)
                      +|.+|+++ .+..
T Consensus       159 iT~~dIlk-~l~~  170 (179)
T d2ooxe1         159 LTQYRILK-FISM  170 (179)
T ss_dssp             EEHHHHHH-HHHT
T ss_pred             EeHHHHHH-HHHH
Confidence            99999984 4433

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-14  Score=114.17  Aligned_cols=145  Identities=13%  Similarity=0.142  Sum_probs=100.2

Q ss_pred             cccccccccc----C--ceEEeCCCcHHHHHHHhHhCCCcEeeEee---CCeEEEEEeHHHHHHHHHHHHHHHHHhHHHH
Q 021709           40 ETPVSKVMTR----N--PTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAI  110 (308)
Q Consensus        40 ~~~v~~im~~----~--~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~~vGivs~~dll~~~~~~~~~~~~~~~~~  110 (308)
                      ++.++|+|.+    +  .+.+.+++++.+|+++|.+++++++||++   +++++|+++.+|+++............    
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~----   77 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGV----   77 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCC----
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhccccccccc----
Confidence            3467888853    2  24567888999999999999999999993   478999999999987643211000000    


Q ss_pred             HHHhhhhhhccCCCCCChhHHHHHHHHHhcCCCcccccCCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEeeCCEEEEEe
Q 021709          111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL  190 (308)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~Giv  190 (308)
                        ..... ..+......      .........++.++|.  +++.++.+++++.+++++|.+++.+++||.++|+++|+|
T Consensus        78 --~~~~~-~~~~~~~~~------~~~~~~~~~~v~~im~--~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiI  146 (169)
T d2j9la1          78 --VSTSI-IYFTEHSPP------LPPYTPPTLKLRNILD--LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGII  146 (169)
T ss_dssp             --CTTCE-EECSSSCCC------CCTTCCCCEECGGGEE--SSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEE
T ss_pred             --ccchh-hhhcccchh------hhhccccccchhhhcc--CCCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEE
Confidence              00000 000000000      0000112344788887  689999999999999999999999999999999999999


Q ss_pred             eHHHHHHHH
Q 021709          191 TSKDILMRV  199 (308)
Q Consensus       191 t~~dl~~~~  199 (308)
                      |++|+++.+
T Consensus       147 t~~Dil~~l  155 (169)
T d2j9la1         147 TKKDVLKHI  155 (169)
T ss_dssp             EHHHHHHHH
T ss_pred             EHHHHHHHH
Confidence            999998444

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=82.31  E-value=0.013  Score=45.63  Aligned_cols=76  Identities=9%  Similarity=-0.052  Sum_probs=58.7

Q ss_pred             CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEEhhHHH
Q 021709          183 ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT  262 (308)
Q Consensus       183 ~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~iGiit~~di~  262 (308)
                      .+++.|+.+..++....       ....+.+++.....++...++-+.+.++|...+.+..||++++++.+|.|+..|+.
T Consensus       118 ~~~l~~f~dl~~l~~~~-------~~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die  190 (213)
T d1lkvx_         118 RRRMFVFEDILKLDDRS-------IQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVE  190 (213)
T ss_dssp             HHHHCCGGGGGGSCHHH-------HHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred             hhhccccccHHHHcccc-------HhHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHH
Confidence            44555655555543111       13456777777888889999999999999999999999999999999999999986


Q ss_pred             HHH
Q 021709          263 HAA  265 (308)
Q Consensus       263 ~~~  265 (308)
                      .+.
T Consensus       191 ~A~  193 (213)
T d1lkvx_         191 EAQ  193 (213)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544