Citrus Sinensis ID: 021738

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MAKKLEGFNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRFWSKM
ccccccccccccccccccEEEEEEEEcccccEEEEEEEEEEEEEEcccccccccccccEEccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccEEEEEEEEEEEcEEEEEccccEEccEEEEcccEEEEEEEEEEcccEEEEEcccccEEEEEccccccccccccccccccccccEEEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEcccccccccccccccccEEEEccccccEEEEEEEEcccccc
ccHHcccEEEEcccccccEEEEEEEEcccccEEEEEEEEEEEEEEccHHHHHcccHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEEEEEEEEccEEEEEcccccccccEccccEEEEEEEEEccccEEEEEEEEEEEEEEcccEcEcccccccccccccEccccEEEEEEEEEEEccccHHHcccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEccccccccccccccEEEEcccccccEEEEEEEEccccc
makklegfnfeqrhgkARVRVARVWRSKEGRHFMVEWNVSISLLSDSIiayvdddnsdivatdtIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEkpwecvsvdgqlhehgfklgserhttevtvqesgtlqmtsGIEGLALLKTtksgfegfirdkytalpdtQERMLATEVTSTWRYSYESvfnlpqkplyfTERYLAVKKVLMdtffgppkegvysasVQSTLYQMAKAVLGrfhdislvhlkmpnihflpvnlsskdkdiivkfeddvylptdephgsieaSFSRFWSKM
makklegfnfeqrhgkarvrvarvwrskegrhfmvEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGfklgserhtTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKytalpdtqeRMLATEVTSTWRYSYESvfnlpqkplYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDvylptdephgsieasfsrfwskm
MAKKLEGFNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRFWSKM
***************KARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQ**GTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPT******************
******G***EQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRF*S**
MAKKLEGFNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRFWSKM
****LEGFNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRFW***
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MAKKLEGFNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRFWSKM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query308 2.2.26 [Sep-21-2011]
P53763308 Uricase-2 OS=Phaseolus vu N/A no 0.996 0.996 0.760 1e-139
P04670309 Uricase-2 isozyme 1 OS=Gl yes no 0.983 0.980 0.746 1e-137
P34798308 Uricase-2 isozyme 1 OS=Ca N/A no 0.996 0.996 0.754 1e-137
O04104309 Uricase-2 isozyme 2 OS=Gl yes no 0.983 0.980 0.75 1e-136
P34799301 Uricase-2 isozyme 2 OS=Ca N/A no 0.974 0.996 0.757 1e-134
O04420309 Uricase OS=Arabidopsis th yes no 1.0 0.996 0.702 1e-127
P11645300 Uricase OS=Oryctolagus cu yes no 0.896 0.92 0.369 3e-41
P16164304 Uricase OS=Sus scrofa GN= yes no 0.896 0.907 0.363 3e-41
P09118303 Uricase OS=Rattus norvegi yes no 0.892 0.907 0.366 5e-41
P25688303 Uricase OS=Mus musculus G yes no 0.892 0.907 0.359 5e-41
>sp|P53763|URIC_PHAVU Uricase-2 OS=Phaseolus vulgaris GN=URIII PE=1 SV=2 Back     alignment and function desciption
 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/309 (76%), Positives = 271/309 (87%), Gaps = 2/309 (0%)

Query: 1   MAKKL-EGFNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDI 59
           MA+++ EGF FEQRHGK RVRVARVWR+ +GRHF+VEW V I+L SD + +Y+ DDNSDI
Sbjct: 1   MAQEVVEGFKFEQRHGKERVRVARVWRTPQGRHFVVEWRVGITLFSDCVNSYLRDDNSDI 60

Query: 60  VATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDG 119
           VATDT+KNTVYAKAKEC + LSVE+FAILLAKHF SFY++VT AIV IVEKPWE V VDG
Sbjct: 61  VATDTMKNTVYAKAKECSDILSVEDFAILLAKHFVSFYKKVTGAIVNIVEKPWERVIVDG 120

Query: 120 QLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQ 179
           Q H+HGF LGSE+HTTE  VQ+SG+LQ+TSGIEGL++LKTT+SGFE FIR+KYTALPDT+
Sbjct: 121 QPHQHGFTLGSEKHTTEAIVQKSGSLQLTSGIEGLSVLKTTQSGFENFIRNKYTALPDTR 180

Query: 180 ERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQST 239
           ER+LATEVT+ WRYSYES++NLPQKPLYFT++YL VKKVL DTFFGPP  GVYS SVQ+T
Sbjct: 181 ERILATEVTALWRYSYESLYNLPQKPLYFTDKYLEVKKVLADTFFGPPNRGVYSPSVQNT 240

Query: 240 LYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEA 299
           LY MAKA L RF DI+ VHLKMPN+HFLPVN+SSKD   IVKFEDDVYLPTDEPHGSIEA
Sbjct: 241 LYLMAKATLNRFPDIAYVHLKMPNLHFLPVNISSKDGP-IVKFEDDVYLPTDEPHGSIEA 299

Query: 300 SFSRFWSKM 308
           S SR WSK+
Sbjct: 300 SLSRVWSKL 308
Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
Phaseolus vulgaris (taxid: 3885)
EC: 1EC: .EC: 7EC: .EC: 3EC: .EC: 3
>sp|P04670|URIC1_SOYBN Uricase-2 isozyme 1 OS=Glycine max PE=1 SV=2 Back     alignment and function description
>sp|P34798|URIC1_CANLI Uricase-2 isozyme 1 OS=Canavalia lineata PE=2 SV=1 Back     alignment and function description
>sp|O04104|URIC2_SOYBN Uricase-2 isozyme 2 OS=Glycine max PE=1 SV=1 Back     alignment and function description
>sp|P34799|URIC2_CANLI Uricase-2 isozyme 2 OS=Canavalia lineata PE=2 SV=1 Back     alignment and function description
>sp|O04420|URIC_ARATH Uricase OS=Arabidopsis thaliana GN=At2g26230 PE=1 SV=2 Back     alignment and function description
>sp|P11645|URIC_RABIT Uricase OS=Oryctolagus cuniculus GN=UOX PE=2 SV=1 Back     alignment and function description
>sp|P16164|URIC_PIG Uricase OS=Sus scrofa GN=UOX PE=2 SV=3 Back     alignment and function description
>sp|P09118|URIC_RAT Uricase OS=Rattus norvegicus GN=Uox PE=1 SV=3 Back     alignment and function description
>sp|P25688|URIC_MOUSE Uricase OS=Mus musculus GN=Uox PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
11414898307 uricase [Lotus japonicus] gi|388517671|g 0.996 1.0 0.782 1e-142
388521085307 unknown [Lotus japonicus] 0.996 1.0 0.782 1e-141
224110112308 predicted protein [Populus trichocarpa] 0.996 0.996 0.779 1e-141
7242493308 urate oxidase [Cicer arietinum] gi|72424 0.996 0.996 0.786 1e-140
118487226308 unknown [Populus trichocarpa] 0.996 0.996 0.776 1e-140
4996846308 uricase (Nod-35) [Medicago sativa] 0.996 0.996 0.776 1e-140
4996848308 uricase (Nod-35) [Medicago sativa] 0.996 0.996 0.766 1e-139
6175091308 RecName: Full=Uricase-2; AltName: Full=N 0.996 0.996 0.760 1e-138
86558912308 urate oxidase [Medicago truncatula] 0.996 0.996 0.763 1e-137
86558918307 urate oxidase [Solanum tuberosum] 0.990 0.993 0.747 1e-136
>gi|11414898|dbj|BAB18538.1| uricase [Lotus japonicus] gi|388517671|gb|AFK46897.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/308 (78%), Positives = 276/308 (89%), Gaps = 1/308 (0%)

Query: 1   MAKKLEGFNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIV 60
           MAK++EGF FEQRHGK RVRVARVW++ +G HF+VEW VSISLLSD + +Y+ DDNSDIV
Sbjct: 1   MAKEVEGFKFEQRHGKERVRVARVWKNNQGHHFVVEWRVSISLLSDCLNSYLRDDNSDIV 60

Query: 61  ATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQ 120
           ATDT+KNTVYAKAKEC E LSVE+FAILLAKHFTSFY+QVT+AIV+IVEKPWE V+VDGQ
Sbjct: 61  ATDTMKNTVYAKAKECSEILSVEDFAILLAKHFTSFYKQVTTAIVKIVEKPWERVNVDGQ 120

Query: 121 LHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQE 180
            HEHGFKLGSE+HT E  VQ+SG LQ+TSGIEGL+LLKTTKSGFEGFIRDKYT LP+T+E
Sbjct: 121 PHEHGFKLGSEKHTAEAIVQKSGALQLTSGIEGLSLLKTTKSGFEGFIRDKYTVLPETRE 180

Query: 181 RMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTL 240
           RMLATEVT+ WRYSYES++++PQKPLYFTE+YL VKKV++DTFFG PKEGVYS SVQSTL
Sbjct: 181 RMLATEVTALWRYSYESLYSIPQKPLYFTEKYLDVKKVIVDTFFGHPKEGVYSPSVQSTL 240

Query: 241 YQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEAS 300
           YQMAKA L RF D++ + LKMPNIHF+PVNLS+KD   IVKF+DDVYLPTDEPHGSIEAS
Sbjct: 241 YQMAKATLNRFPDVASIQLKMPNIHFIPVNLSNKDGP-IVKFDDDVYLPTDEPHGSIEAS 299

Query: 301 FSRFWSKM 308
            SR  SKM
Sbjct: 300 LSRILSKM 307

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388521085|gb|AFK48604.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224110112|ref|XP_002315419.1| predicted protein [Populus trichocarpa] gi|222864459|gb|EEF01590.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|7242493|emb|CAB77204.1| urate oxidase [Cicer arietinum] gi|7242495|emb|CAB77205.1| urate oxidase [Cicer arietinum] Back     alignment and taxonomy information
>gi|118487226|gb|ABK95441.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|4996846|dbj|BAA78607.1| uricase (Nod-35) [Medicago sativa] Back     alignment and taxonomy information
>gi|4996848|dbj|BAA78608.1| uricase (Nod-35) [Medicago sativa] Back     alignment and taxonomy information
>gi|6175091|sp|P53763.2|URIC_PHAVU RecName: Full=Uricase-2; AltName: Full=Nodule-specific uricase; AltName: Full=Urate oxidase; AltName: Full=Uricase II gi|2809326|gb|AAB97726.1| uricase II [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|86558912|gb|ABD03939.1| urate oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|86558918|gb|ABD03942.1| urate oxidase [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
TAIR|locus:2057727309 AT2G26230 [Arabidopsis thalian 1.0 0.996 0.702 3.9e-115
UNIPROTKB|P16164304 UOX "Uricase" [Sus scrofa (tax 0.931 0.944 0.358 8.4e-42
UNIPROTKB|I3LL15304 UOX "Uricase" [Sus scrofa (tax 0.931 0.944 0.355 2.2e-41
UNIPROTKB|J9P3T4304 UOX "Uricase" [Canis lupus fam 0.931 0.944 0.365 3.6e-41
UNIPROTKB|F1PA91305 UOX "Uricase" [Canis lupus fam 0.896 0.904 0.369 4.6e-41
UNIPROTKB|Q5FZI9304 UOX "Uricase" [Canis lupus fam 0.931 0.944 0.365 4.6e-41
RGD|621369303 Uox "urate oxidase" [Rattus no 0.892 0.907 0.369 4.6e-41
UNIPROTKB|P09118303 Uox "Uricase" [Rattus norvegic 0.892 0.907 0.369 4.6e-41
MGI|MGI:98907303 Uox "urate oxidase" [Mus muscu 0.892 0.907 0.359 5.9e-41
UNIPROTKB|Q3MHG7304 UOX "Uricase" [Bos taurus (tax 0.896 0.907 0.363 1.6e-40
TAIR|locus:2057727 AT2G26230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 217/309 (70%), Positives = 256/309 (82%)

Query:     1 MAKKLEGFNFEQRHGKARVRVARVWR-SKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDI 59
             MA++ +G   +QRHGKARVRV RVWR + +G H  VEWNVSISLLS  + +Y  DDNSDI
Sbjct:     1 MAQEADGIRLDQRHGKARVRVGRVWRHAHDGSHHFVEWNVSISLLSHCLSSYRLDDNSDI 60

Query:    60 VATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDG 119
             VATDTIKNTVY KAKEC ++LSVEEFAIL+ KHF SFY QV +AIV I+EKPWE VS+DG
Sbjct:    61 VATDTIKNTVYVKAKECGDRLSVEEFAILIGKHFCSFYPQVFTAIVNIIEKPWERVSIDG 120

Query:   120 QLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQ 179
             + H HGFKLGSE HTTE  V++SG L +TSGI GLALLKTT+SGFE F+RDKYT LP+T+
Sbjct:   121 KPHLHGFKLGSENHTTEARVEKSGALNLTSGIGGLALLKTTQSGFERFVRDKYTILPETR 180

Query:   180 ERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQST 239
             ERMLATEV ++WRYSYESV ++P K LYF+E+++ VKKVLMDTFFGPP+ GVYS SVQ T
Sbjct:   181 ERMLATEVNASWRYSYESVASIPTKGLYFSEKFMDVKKVLMDTFFGPPETGVYSPSVQRT 240

Query:   240 LYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEA 299
             LY M  AVL RF D+S +HLKMPNIHFLPVNLS+K+   +VKF+DDVYLPTDEPHGSIEA
Sbjct:   241 LYLMGSAVLKRFADVSSIHLKMPNIHFLPVNLSTKENPSMVKFKDDVYLPTDEPHGSIEA 300

Query:   300 SFSRFWSKM 308
             + SR  SK+
Sbjct:   301 TLSRITSKL 309
GO:0004846 "urate oxidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0006144 "purine nucleobase metabolic process" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005777 "peroxisome" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
UNIPROTKB|P16164 UOX "Uricase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LL15 UOX "Uricase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9P3T4 UOX "Uricase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PA91 UOX "Uricase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5FZI9 UOX "Uricase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|621369 Uox "urate oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P09118 Uox "Uricase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:98907 Uox "urate oxidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHG7 UOX "Uricase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P09118URIC_RAT1, ., 7, ., 3, ., 30.36640.89280.9075yesno
O74409URIC_SCHPO1, ., 7, ., 3, ., 30.30370.91230.9493yesno
P53763URIC_PHAVU1, ., 7, ., 3, ., 30.76050.99670.9967N/Ano
P34799URIC2_CANLI1, ., 7, ., 3, ., 30.75720.97400.9966N/Ano
P34798URIC1_CANLI1, ., 7, ., 3, ., 30.75400.99670.9967N/Ano
O04420URIC_ARATH1, ., 7, ., 3, ., 30.70221.00.9967yesno
P25688URIC_MOUSE1, ., 7, ., 3, ., 30.35950.89280.9075yesno
Q8MKJ3URIC_MACMU1, ., 7, ., 3, ., 30.35610.89610.9078yesno
P16164URIC_PIG1, ., 7, ., 3, ., 30.36300.89610.9078yesno
Q5FZI9URIC_CANFA1, ., 7, ., 3, ., 30.36980.89610.9078yesno
P11645URIC_RABIT1, ., 7, ., 3, ., 30.36980.89610.92yesno
O04104URIC2_SOYBN1, ., 7, ., 3, ., 30.750.98370.9805yesno
P04670URIC1_SOYBN1, ., 7, ., 3, ., 30.74670.98370.9805yesno
P22673URIC_DROPS1, ., 7, ., 3, ., 30.34710.90580.8063yesno
Q3MHG7URIC_BOVIN1, ., 7, ., 3, ., 30.36300.89610.9078yesno
P33282URIC_EMENI1, ., 7, ., 3, ., 30.33220.91230.9335yesno
Q54LT2URIC_DICDI1, ., 7, ., 3, ., 30.360.90900.9756yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.7.3.30.979
3rd Layer1.7.30.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
PLN02415304 PLN02415, PLN02415, uricase 0.0
cd00445286 cd00445, Uricase, Urate oxidase (UO, uricase) is a 1e-138
TIGR03383282 TIGR03383, urate_oxi, urate oxidase 1e-128
COG3648299 COG3648, COG3648, Uricase (urate oxidase) [Seconda 2e-53
pfam01014145 pfam01014, Uricase, Uricase 4e-46
pfam01014145 pfam01014, Uricase, Uricase 7e-35
cd00651122 cd00651, TFold, Tunnelling fold (T-fold) 1e-11
cd00651122 cd00651, TFold, Tunnelling fold (T-fold) 4e-10
>gnl|CDD|178036 PLN02415, PLN02415, uricase Back     alignment and domain information 
 Score =  537 bits (1386), Expect = 0.0
 Identities = 225/307 (73%), Positives = 255/307 (83%), Gaps = 5/307 (1%)

Query: 4   KLEGFNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATD 63
           + +GF  EQRHGKARVRV RVWR+  G H  VEWNVSISLLSD + AYV DDNSDIVATD
Sbjct: 1   EADGFLLEQRHGKARVRVGRVWRADGGIHHFVEWNVSISLLSDCLPAYVRDDNSDIVATD 60

Query: 64  TIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHE 123
           TIKNTVY KAKEC ++LSVEEFAILLAKHFTS Y QVT+AIV I +KPWE VS+DG+ H+
Sbjct: 61  TIKNTVYVKAKECTQRLSVEEFAILLAKHFTSTYPQVTTAIVSIEQKPWERVSIDGKPHD 120

Query: 124 HGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERML 183
           HGFKLGSE+HT EVTV +SG L +TSGI GL+LLKTT+SGFEGFIRDKYTALP+T+ER+L
Sbjct: 121 HGFKLGSEKHTAEVTVSKSGALDVTSGITGLSLLKTTQSGFEGFIRDKYTALPETRERIL 180

Query: 184 ATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQM 243
           ATEVT++WRYS  SV ++P KPL +TE YL VKKVL DTFFGPPK GVYS SVQ TLYQM
Sbjct: 181 ATEVTASWRYS--SVSSIPTKPLCYTEAYLDVKKVLADTFFGPPKSGVYSPSVQYTLYQM 238

Query: 244 AKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303
           AKAVL RF DIS + L MPN+HFLPVNL +K+   IVKF DDVYLPT EPHGSIEA+ SR
Sbjct: 239 AKAVLNRFPDISSIQLNMPNLHFLPVNLPTKENS-IVKFNDDVYLPTSEPHGSIEATVSR 297

Query: 304 --FWSKM 308
               SK+
Sbjct: 298 KTPTSKL 304

Length = 304
>gnl|CDD|238251 cd00445, Uricase, Urate oxidase (UO, uricase) is a peroxisomal enzyme that catalyzes the oxidation of uric acid to allantoin in most fish, amphibian, and mammalian species Back     alignment and domain information
>gnl|CDD|234192 TIGR03383, urate_oxi, urate oxidase Back     alignment and domain information
>gnl|CDD|226174 COG3648, COG3648, Uricase (urate oxidase) [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|216244 pfam01014, Uricase, Uricase Back     alignment and domain information
>gnl|CDD|216244 pfam01014, Uricase, Uricase Back     alignment and domain information
>gnl|CDD|238351 cd00651, TFold, Tunnelling fold (T-fold) Back     alignment and domain information
>gnl|CDD|238351 cd00651, TFold, Tunnelling fold (T-fold) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 308
PLN02415304 uricase 100.0
cd00445286 Uricase Urate oxidase (UO, uricase) is a peroxisom 100.0
TIGR03383282 urate_oxi urate oxidase. Members of this protein f 100.0
KOG1599297 consensus Uricase (urate oxidase) [Secondary metab 100.0
COG3648299 Uricase (urate oxidase) [Secondary metabolites bio 100.0
PF01014138 Uricase: Uricase; InterPro: IPR002042 Uricase (1.7 100.0
PF01014138 Uricase: Uricase; InterPro: IPR002042 Uricase (1.7 100.0
cd00651122 TFold Tunnelling fold (T-fold). The five known T-f 97.27
cd00651122 TFold Tunnelling fold (T-fold). The five known T-f 96.45
TIGR00525116 folB dihydroneopterin aldolase. This model describ 94.05
TIGR00526118 folB_dom FolB domain. Two paralogous genes of E. c 92.97
cd00534118 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7 90.26
PF02152113 FolB: Dihydroneopterin aldolase; InterPro: IPR0061 90.08
PRK11245120 folX D-erythro-7,8-dihydroneopterin triphosphate 2 89.35
KOG1599297 consensus Uricase (urate oxidase) [Secondary metab 84.15
PRK11593119 folB bifunctional dihydroneopterin aldolase/dihydr 80.5
>PLN02415 uricase Back     alignment and domain information 
Probab=100.00  E-value=2e-124  Score=887.20  Aligned_cols=301  Identities=75%  Similarity=1.144  Sum_probs=285.0

Q ss_pred             ccccchhcccCCCceEEEEEEeCCCCceeEEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHH
Q 021738            5 LEGFNFEQRHGKARVRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEE   84 (308)
Q Consensus         5 ~~~~~~~~~YGK~~Vrv~rv~R~~~~~H~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~   84 (308)
                      |+.+++.++|||++|||+||+|.+++.|+|+|+||+|+|+|||++|||+||||.||||||||||||++||+++++.+||+
T Consensus         2 ~~~~~~~~~YGK~~Vrv~rv~R~~~~~H~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNTVy~~Ak~~~~v~s~E~   81 (304)
T PLN02415          2 ADGFLLEQRHGKARVRVGRVWRADGGIHHFVEWNVSISLLSDCLPAYVRDDNSDIVATDTIKNTVYVKAKECTQRLSVEE   81 (304)
T ss_pred             CceeehhhccCccceEEEEEEecCCCceEEEEEEEEEEEeecchhheecCCCCccccccchHHHHHHHHHhcCCCCCHHH
Confidence            56778888999999999999994357999999999999999999999999999999999999999999999756999999


Q ss_pred             HHHHHHHHHhccCCCeeEEEEEEEEeceeEeeeCCcccccccccCCceeEEEEEEecCCceEEEecccccEEEeecCCcc
Q 021738           85 FAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGF  164 (308)
Q Consensus        85 F~~~L~~hFl~~Y~hV~~~~v~i~e~~W~Ri~v~g~~H~HsF~~g~e~r~~~v~~~~~~~~~v~SGi~dL~vLKtTgS~F  164 (308)
                      ||++||+|||++||||++|+|+|+|+||+||.++|+||+|||++|+|+|+|+|+++|+|.++|.|||+||+|||||||+|
T Consensus        82 Fa~~L~~HF~~~y~hV~~a~v~i~e~~W~Ri~v~G~pH~HsF~~g~e~r~~~v~~~~~~~~~v~SGi~dL~vLKtT~S~F  161 (304)
T PLN02415         82 FAILLAKHFTSTYPQVTTAIVSIEQKPWERVSIDGKPHDHGFKLGSEKHTAEVTVSKSGALDVTSGITGLSLLKTTQSGF  161 (304)
T ss_pred             HHHHHHHHHhccCCCeEEEEEEEEEcceEEeccCCCcCCceeccCCceeEEEEEEeCCCceEEEecccceEEEeecCccc
Confidence            99999999999999999999999999999999999999999966889999999999998889999999999999999999


Q ss_pred             cccccCCccCCCCCCCcceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHH
Q 021738          165 EGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMA  244 (308)
Q Consensus       165 ~GFirDeYTTLpEt~DRilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~mg  244 (308)
                      +||+||||||||||+||||||+|+|+|+|+  ..+++...+.||+++|++||++||++|||||++++||||||+|||+||
T Consensus       162 ~GF~rDeYTTLpet~DRilaT~v~a~W~y~--~~~~~~~~~~df~~~~~~vr~~ll~~Fag~~~~~~~S~SvQ~TlY~m~  239 (304)
T PLN02415        162 EGFIRDKYTALPETRERILATEVTASWRYS--SVSSIPTKPLCYTEAYLDVKKVLADTFFGPPKSGVYSPSVQYTLYQMA  239 (304)
T ss_pred             cccccCCcccCCCcccceEEEEEEEEEEEc--cccccccCccchHHHHHHHHHHHHHHhcCCcccCccCHHHHHHHHHHH
Confidence            999999999999999999999999999996  233455667899999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCeeEEEEECcCcceecccCCCCCCcccCCCCCeEEecCCCCCeeEEEEEecC--CCCC
Q 021738          245 KAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRF--WSKM  308 (308)
Q Consensus       245 ~~vL~~~P~v~eV~~~~PNkH~~~vdls~f~~~~~~~~~~eVf~p~d~P~G~I~atv~R~--~~kl  308 (308)
                      ++||+++|||++|+|+|||||||+|||+||++ .+++|+||||+|+|+|||+|+|||+|+  .|||
T Consensus       240 ~~iL~~~P~i~~V~~~lPNkH~f~vdl~~~~~-~~l~n~~eVf~p~d~P~G~I~~tv~R~~~~~~~  304 (304)
T PLN02415        240 KAVLNRFPDISSIQLNMPNLHFLPVNLPTKEN-SIVKFNDDVYLPTSEPHGSIEATVSRKTPTSKL  304 (304)
T ss_pred             HHHHHhCCCceEEEEECCCcceEEEccccccc-ccCCCCCeEEccCCCCCccEEEEEECCCCCCCC
Confidence            99999999999999999999999999999863 348899999999999999999999999  7887

>cd00445 Uricase Urate oxidase (UO, uricase) is a peroxisomal enzyme that catalyzes the oxidation of uric acid to allantoin in most fish, amphibian, and mammalian species Back     alignment and domain information
>TIGR03383 urate_oxi urate oxidase Back     alignment and domain information
>KOG1599 consensus Uricase (urate oxidase) [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG3648 Uricase (urate oxidase) [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF01014 Uricase: Uricase; InterPro: IPR002042 Uricase (1 Back     alignment and domain information
>PF01014 Uricase: Uricase; InterPro: IPR002042 Uricase (1 Back     alignment and domain information
>cd00651 TFold Tunnelling fold (T-fold) Back     alignment and domain information
>cd00651 TFold Tunnelling fold (T-fold) Back     alignment and domain information
>TIGR00525 folB dihydroneopterin aldolase Back     alignment and domain information
>TIGR00526 folB_dom FolB domain Back     alignment and domain information
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively Back     alignment and domain information
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate Back     alignment and domain information
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional Back     alignment and domain information
>KOG1599 consensus Uricase (urate oxidase) [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
3l8w_A296 Urate Oxidase From Aspergillus Flavus Complexed Wit 3e-37
2pes_A295 Urate Oxidase In Complex With Tris-Dipicolinate Lut 3e-37
1r4s_A301 Urate Oxidase From Aspergillus Flavus Complexed Wit 3e-37
2zka_A302 Urate Oxidase Complexed With 8-Azaxanthine Under 1. 3e-37
3bjp_A301 Urate Oxidase Cyanide Uric Acid Ternary Complex Len 3e-37
2yzb_A302 Crystal Structure Of Uricase From Arthrobacter Glob 2e-36
1vax_A287 Crystal Structure Of Uricase From Arthrobacter Glob 2e-36
1j2g_A319 Crystal Structure Of Urate Oxidase From Bacillus Sp 7e-12
>pdb|3L8W|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Xanthin Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 155/294 (52%), Gaps = 9/294 (3%)
Query: 13  RHGKARVRVARVWRS-KEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYA 71
           R+GK  VRV +V +  K G   + E  V + L  +   +Y   DNS IVATD+IKNT+Y 
Sbjct: 8   RYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYI 67
Query: 72  KAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KLGS 130
            AK+       E F  +L  HF   Y  + +A V IV   W  + +DG+ H H F +   
Sbjct: 68  TAKQ-NPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSE 126
Query: 131 ERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTST 190
           E+   +V V E   + + S + GL +LK+T S F GF+RD+YT L +T +R+L+T+V +T
Sbjct: 127 EKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDAT 186
Query: 191 WRY-SYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLG 249
           W++ ++  +  +      F   +   ++V + TF         SASVQ+T+Y+MA+ +L 
Sbjct: 187 WQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDN-----SASVQATMYKMAEQILA 241
Query: 250 RFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303
           R   I  V   +PN H+  ++LS            +V+ P  +P+G I+ +  R
Sbjct: 242 RQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGR 295
>pdb|2PES|A Chain A, Urate Oxidase In Complex With Tris-Dipicolinate Lutetium Length = 295 Back     alignment and structure
>pdb|1R4S|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its Inhibitor 9- Methyl Uric Acid Length = 301 Back     alignment and structure
>pdb|2ZKA|A Chain A, Urate Oxidase Complexed With 8-Azaxanthine Under 1.0 Mpa Oxygen Pressure Length = 302 Back     alignment and structure
>pdb|3BJP|A Chain A, Urate Oxidase Cyanide Uric Acid Ternary Complex Length = 301 Back     alignment and structure
>pdb|2YZB|A Chain A, Crystal Structure Of Uricase From Arthrobacter Globiformis In Complex With Uric Acid (Substrate) Length = 302 Back     alignment and structure
>pdb|1VAX|A Chain A, Crystal Structure Of Uricase From Arthrobacter Globiformis Length = 287 Back     alignment and structure
>pdb|1J2G|A Chain A, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90 Co- Crystallized With 8-Azaxanthine Length = 319 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
3l8w_A296 Uricase, urate oxidase; oxidoreductase, URIC acid 1e-120
2yzc_A302 Uricase; oxidoreductase, allantoate; HET: 1AL; 1.8 1e-108
1j2g_A319 Uricase, urate oxidase; T-fold barrel, purine, oxi 1e-103
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation, xanthine, inhibition aspergillus flavus, peroxisome, purine metabolism; HET: XAN 4PO; 1.00A {Aspergillus flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A* 1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A* 1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 3p9o_A 2ic0_A* ... Length = 296 Back     alignment and structure
 Score =  345 bits (886), Expect = e-120
 Identities = 98/296 (33%), Positives = 154/296 (52%), Gaps = 9/296 (3%)

Query: 11  EQRHGKARVRVARVWRS-KEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTV 69
             R+GK  VRV +V +  K G   + E  V + L  +   +Y   DNS IVATD+IKNT+
Sbjct: 6   AARYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTI 65

Query: 70  YAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KL 128
           Y  AK+       E F  +L  HF   Y  + +A V IV   W  + +DG+ H H F + 
Sbjct: 66  YITAKQ-NPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRD 124

Query: 129 GSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVT 188
             E+   +V V E   + + S + GL +LK+T S F GF+RD+YT L +T +R+L+T+V 
Sbjct: 125 SEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVD 184

Query: 189 STWRYS-YESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAV 247
           +TW++  +  +  +      F   +   ++V + TF         SASVQ+T+Y+MA+ +
Sbjct: 185 ATWQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAED-----NSASVQATMYKMAEQI 239

Query: 248 LGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303
           L R   I  V   +PN H+  ++LS            +V+ P  +P+G I+ +  R
Sbjct: 240 LARQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGR 295
>2yzc_A Uricase; oxidoreductase, allantoate; HET: 1AL; 1.88A {Arthrobacter globiformis} SCOP: d.96.1.4 d.96.1.4 PDB: 2yzb_A* 2yzd_A* 2yze_A 1vax_A 1vay_A* Length = 302 Back     alignment and structure
>1j2g_A Uricase, urate oxidase; T-fold barrel, purine, oxidoreductase; HET: AZA; 2.20A {Bacillus SP} SCOP: d.96.1.4 d.96.1.4 Length = 319 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
3l8w_A296 Uricase, urate oxidase; oxidoreductase, URIC acid 100.0
2yzc_A302 Uricase; oxidoreductase, allantoate; HET: 1AL; 1.8 100.0
1j2g_A319 Uricase, urate oxidase; T-fold barrel, purine, oxi 100.0
1dhn_A121 DHNA, 7,8-dihydroneopterin aldolase; pterin bindin 90.43
1nbu_A119 DHNA, probable dihydroneopterin aldolase; anti-par 89.91
1z9w_A133 DHNA, dihydroneopterin aldolase; FOLB, structural 89.15
1sql_A146 Dihydroneopterin aldolase; tetrahydrofolate biosyn 88.01
2cg8_A270 Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dih 87.21
3v9o_A143 Dihydroneopterin aldolase; structural genomics, se 87.03
4aey_A156 D-erythro-7,8-dihydroneopterin triphosphate epime; 84.74
3r2e_A143 Dihydroneopterin aldolase; structural genomics, ID 83.55
1b9l_A120 Protein (epimerase); isomerase; 2.90A {Escherichia 81.19
3o1k_A132 Dihydroneopterin aldolase FOLB, putative; structur 80.2
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation, xanthine, inhibition aspergillus flavus, peroxisome, purine metabolism; HET: XAN 4PO; 1.00A {Aspergillus flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A* 1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A* 1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 3p9o_A 2ic0_A* ... Back     alignment and structure
Probab=100.00  E-value=6.2e-122  Score=866.75  Aligned_cols=288  Identities=34%  Similarity=0.553  Sum_probs=270.7

Q ss_pred             ccchhcccCCCceEEEEEEeC-CCCceeEEEEEEEEEEeeCccccccccCCCceecCcchHHHHHHHHHhcCCCCCHHHH
Q 021738            7 GFNFEQRHGKARVRVARVWRS-KEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEF   85 (308)
Q Consensus         7 ~~~~~~~YGK~~Vrv~rv~R~-~~~~H~i~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNtVy~~Ak~~~~~~s~E~F   85 (308)
                      ++|.++||||++|||+||+|+ .+++|+|+||||+|+|+|||+++||+||||.||||||||||||++||++ ++.|||+|
T Consensus         2 ~~L~~~~YGK~~Vrv~rv~Rd~~~~~H~I~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNTVy~~Ak~~-~v~s~E~F   80 (296)
T 3l8w_A            2 SAVKAARYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYITAKQN-PVTPPELF   80 (296)
T ss_dssp             CCCSCCCEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEEESCHHHHHSCCGGGCCCHHHHHHHHHHHHHHS-CCCSHHHH
T ss_pred             ccccccccCCcceEEEEEEecCCCCceEEEEEEEEEEEeecchhhhhcccCCccccccchHHHHHHHHHHc-CCCCHHHH
Confidence            578899999999999999995 2669999999999999999999999999999999999999999999996 79999999


Q ss_pred             HHHHHHHHhccCCCeeEEEEEEEEeceeEeeeCCccccccccc-CCceeEEEEEEecCCceEEEecccccEEEeecCCcc
Q 021738           86 AILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGFKL-GSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGF  164 (308)
Q Consensus        86 ~~~L~~hFl~~Y~hV~~~~v~i~e~~W~Ri~v~g~~H~HsF~~-g~e~r~~~v~~~~~~~~~v~SGi~dL~vLKtTgS~F  164 (308)
                      |++||+|||++||||++|+|.|+|+||+||.+||+||+|||++ |+|+|+|+|+++|++.++|.|||+||+|||||||+|
T Consensus        81 a~~L~~HFl~~y~hV~~a~v~i~e~~W~Ri~v~G~~H~HsF~r~g~e~r~~~v~~~r~~~~~v~SGi~dL~VLKtT~S~F  160 (296)
T 3l8w_A           81 GSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQF  160 (296)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEEEECCEEEEETTEEEEEEEECCCSCEEEEEEEEETTTEEEEEEEEEEEEEEESSSBCB
T ss_pred             HHHHHHHHhccCCCeeEEEEEEEEcceEEeecCCCcCCceeeeCCCceEEEEEEEeCCCCeEEEeccCCcEEEeecCccc
Confidence            9999999999999999999999999999999999999999965 779999999999988899999999999999999999


Q ss_pred             cccccCCccCCCCCCCcceeEEEEEEEEEecc-ccccCCCCCcchhHHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHH
Q 021738          165 EGFIRDKYTALPDTQERMLATEVTSTWRYSYE-SVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQM  243 (308)
Q Consensus       165 ~GFirDeYTTLpEt~DRilsT~v~a~W~y~~~-~~~~~~~~~~df~~~~~~vr~~~l~~Fa~~~~a~~~S~SVQ~TlY~m  243 (308)
                      +||+||||||||||+||||||+|+|+|+|+.. ++++++..+.||+++|++||+++|++|     |++||||||+|||+|
T Consensus       161 ~GF~rDeyTTLpEt~DRilsT~v~a~W~y~~~~~~~~~~~~~~~f~~~~~~vr~~~l~~F-----a~~~S~SvQ~TlY~m  235 (296)
T 3l8w_A          161 WGFLRDEYTTLKETWDRILSTDVDATWQWKNFSGLQEVRSHVPKFDATWATAREVTLKTF-----AEDNSASVQATMYKM  235 (296)
T ss_dssp             CSCCCSTTCCCCCBSSCCEEEEEEEEEEECCBSSHHHHHHTHHHHHHHHHHHHHHHHHHH-----HHCCBSCHHHHHHHH
T ss_pred             cccccCCCccCCCccccceEEEEEEEEEECCccccccccccccchHHHHHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999853 222333345689999999999999999     467999999999999


Q ss_pred             HHHHHhhcCCeeEEEEECcCcceecccCCC-CCCcccCCC---CCeEEecCCCCCeeEEEEEecC
Q 021738          244 AKAVLGRFHDISLVHLKMPNIHFLPVNLSS-KDKDIIVKF---EDDVYLPTDEPHGSIEASFSRF  304 (308)
Q Consensus       244 g~~vL~~~P~v~eV~~~~PNkH~~~vdls~-f~~~~~~~~---~~eVf~p~d~P~G~I~atv~R~  304 (308)
                      |++||+++|||++|+|+|||||||+|||+| ||    ++|   +||||+|+|+|||+|+|||+|+
T Consensus       236 ~~~vL~~~Pei~~V~~~lPNkH~f~vDls~~~g----l~n~~~~~eVf~p~d~P~GlI~~tv~R~  296 (296)
T 3l8w_A          236 AEQILARQQLIETVEYSLPNKHYFEIDLSWHKG----LQNTGKNAEVFAPQSDPNGLIKCTVGRS  296 (296)
T ss_dssp             HHHHHHHCTTEEEEEEEEEECCEEECCCTTTTT----CCCSGGGCCCEEECCSCCEEEEEEEECC
T ss_pred             HHHHHHhCCCeeEEEEECCCcceEeecCccccC----CcCCCCCCeEEecCCCCCeeEEEEEecC
Confidence            999999999999999999999999999999 65    556   8999999999999999999996
>2yzc_A Uricase; oxidoreductase, allantoate; HET: 1AL; 1.88A {Arthrobacter globiformis} SCOP: d.96.1.4 d.96.1.4 PDB: 2yzb_A* 2yzd_A* 2yze_A 1vax_A 1vay_A* Back     alignment and structure
>1j2g_A Uricase, urate oxidase; T-fold barrel, purine, oxidoreductase; HET: AZA; 2.20A {Bacillus SP} SCOP: d.96.1.4 d.96.1.4 Back     alignment and structure
>1dhn_A DHNA, 7,8-dihydroneopterin aldolase; pterin binding, folate biosynthesis, antibiotic target, beta; 1.65A {Staphylococcus aureus} SCOP: d.96.1.3 PDB: 1rri_A* 1rrw_A* 1rry_A* 1rs2_A* 1rs4_A* 1rsd_A* 1rsi_A* 1u68_A* 2dhn_A* 2nm2_A* 2nm3_A* Back     alignment and structure
>1nbu_A DHNA, probable dihydroneopterin aldolase; anti-parallel, beta-sheet, two alpha helices, structural genomics, PSI; HET: PH2; 1.60A {Mycobacterium tuberculosis} SCOP: d.96.1.3 PDB: 1nbu_B* 1nbu_C* Back     alignment and structure
>1z9w_A DHNA, dihydroneopterin aldolase; FOLB, structural genomics, TB ST genomics; 2.50A {Mycobacterium tuberculosis H37RV} SCOP: d.96.1.3 Back     alignment and structure
>1sql_A Dihydroneopterin aldolase; tetrahydrofolate biosynthesis, aldolase classes, retroaldol reaction, purin binding, schiff base, lyase; HET: GUN; 2.20A {Arabidopsis thaliana} SCOP: d.96.1.3 Back     alignment and structure
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae} Back     alignment and structure
>3v9o_A Dihydroneopterin aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: GUN; 1.45A {Burkholderia thailandensis} Back     alignment and structure
>4aey_A D-erythro-7,8-dihydroneopterin triphosphate epime; isomerase, pteridine biosynthesis; 3.00A {Pseudomonas aeruginosa} Back     alignment and structure
>3r2e_A Dihydroneopterin aldolase; structural genomics, IDP90567, center for structural genomic infectious diseases, csgid, bifunctional; 2.15A {Yersinia pestis} Back     alignment and structure
>1b9l_A Protein (epimerase); isomerase; 2.90A {Escherichia coli} SCOP: d.96.1.3 Back     alignment and structure
>3o1k_A Dihydroneopterin aldolase FOLB, putative; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 308
d2ibaa2159 d.96.1.4 (A:137-295) Urate oxidase (uricase) {Aspe 3e-65
d2yzca2156 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arth 1e-57
d1j2ga2154 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Baci 2e-52
d2ibaa1136 d.96.1.4 (A:1-136) Urate oxidase (uricase) {Asperg 3e-52
d2yzca1131 d.96.1.4 (A:11-141) Urate oxidase (uricase) {Arthr 2e-47
d1j2ga1152 d.96.1.4 (A:7-158) Urate oxidase (uricase) {Bacill 3e-39
>d2ibaa2 d.96.1.4 (A:137-295) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]} Length = 159 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: T-fold
superfamily: Tetrahydrobiopterin biosynthesis enzymes-like
family: Urate oxidase (uricase)
domain: Urate oxidase (uricase)
species: Aspergillus flavus [TaxId: 5059]

 Score =  200 bits (510), Expect = 3e-65
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 6/162 (3%)

Query: 143 GTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYS-YESVFNL 201
             + + S + GL +LK+T S F GF+RD+YT L +T +R+L+T+V +TW++  +  +  +
Sbjct: 2   KGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDATWQWKNFSGLQEV 61

Query: 202 PQKPLYFTERYLAVKKVLMDTFFGPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKM 261
                 F   +   ++V + TF         SASVQ+T+Y+MA+ +L R   I  V   +
Sbjct: 62  RSHVPKFDATWATAREVTLKTFAED-----NSASVQATMYKMAEQILARQQLIETVEYSL 116

Query: 262 PNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSR 303
           PN H+  ++LS            +V+ P  +P+G I+ +  R
Sbjct: 117 PNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGR 158
>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arthrobacter globiformis [TaxId: 1665]} Length = 156 Back     information, alignment and structure
>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]} Length = 154 Back     information, alignment and structure
>d2ibaa1 d.96.1.4 (A:1-136) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]} Length = 136 Back     information, alignment and structure
>d2yzca1 d.96.1.4 (A:11-141) Urate oxidase (uricase) {Arthrobacter globiformis [TaxId: 1665]} Length = 131 Back     information, alignment and structure
>d1j2ga1 d.96.1.4 (A:7-158) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]} Length = 152 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
d2yzca2156 Urate oxidase (uricase) {Arthrobacter globiformis 100.0
d2ibaa2159 Urate oxidase (uricase) {Aspergillus flavus [TaxId 100.0
d1j2ga2154 Urate oxidase (uricase) {Bacillus sp., strain TB-9 100.0
d2ibaa1136 Urate oxidase (uricase) {Aspergillus flavus [TaxId 100.0
d2yzca1131 Urate oxidase (uricase) {Arthrobacter globiformis 100.0
d1j2ga1152 Urate oxidase (uricase) {Bacillus sp., strain TB-9 100.0
d1dhna_121 7,8-dihydroneopterin aldolase {Staphylococcus aure 91.61
d1sqla_120 7,8-dihydroneopterin aldolase {Thale cress (Arabid 90.06
d1b9la_119 7,8-dihydroneopterin triphosphate epimerase {Esche 85.55
d1nbua_118 7,8-dihydroneopterin aldolase {Bacteria (Mycobacte 82.44
>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: T-fold
superfamily: Tetrahydrobiopterin biosynthesis enzymes-like
family: Urate oxidase (uricase)
domain: Urate oxidase (uricase)
species: Arthrobacter globiformis [TaxId: 1665]

Probab=100.00  E-value=6.5e-69  Score=462.99  Aligned_cols=146  Identities=37%  Similarity=0.646  Sum_probs=139.5

Q ss_pred             eEEEecccccEEEeecCCcccccccCCccCCCCCCCcceeEEEEEEEEEeccccccCCCCCcchhHHHHHHHHHHHHhcC
Q 021738          145 LQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFF  224 (308)
Q Consensus       145 ~~v~SGi~dL~vLKtTgS~F~GFirDeYTTLpEt~DRilsT~v~a~W~y~~~~~~~~~~~~~df~~~~~~vr~~~l~~Fa  224 (308)
                      ..|.|||+||+|||||||+|+||+||||||||||+||||||+|+|+|+|+..        ++||+++|++||+++|++| 
T Consensus         3 ~~V~SGi~dL~vLKtT~S~F~GF~rDeyTTLpet~DRilaT~v~a~W~y~~~--------~~df~~~~~~vr~~~l~~F-   73 (156)
T d2yzca2           3 QAIVAGIEGLTVLKSTGSEFHGFPRDKYTTLQETTDRILATDVSARWRYNTV--------EVDFDAVYASVRGLLLKAF-   73 (156)
T ss_dssp             EEEEEEEEEEEEEESSSBCBCCCCCCTTCCCCCBSCCCEEEEEEEEEEESCS--------CCCHHHHHHHHHHHHHHHH-
T ss_pred             ceeeeccCceEEEEecCccccccccCccccCCCcccceEEEEEEEEEEECCC--------CCChHHHHHHHHHHHHHHH-
Confidence            6899999999999999999999999999999999999999999999999753        4799999999999999999 


Q ss_pred             CCCCCCccChhHHHHHHHHHHHHHhhcCCeeEEEEECcCcceecccCCCCCCcccCCCCCeEEecCCCCCeeEEEEEecC
Q 021738          225 GPPKEGVYSASVQSTLYQMAKAVLGRFHDISLVHLKMPNIHFLPVNLSSKDKDIIVKFEDDVYLPTDEPHGSIEASFSRF  304 (308)
Q Consensus       225 ~~~~a~~~S~SVQ~TlY~mg~~vL~~~P~v~eV~~~~PNkH~~~vdls~f~~~~~~~~~~eVf~p~d~P~G~I~atv~R~  304 (308)
                          |++||||||+|||+||++||+++|||++|+|+|||||||+|||++||    ++|+||||+|+|+|||+|+|||+|+
T Consensus        74 ----a~~~S~SvQ~TlY~mg~~vL~~~P~i~~I~~~lPNkH~f~vdl~~~g----~~n~~eVf~p~d~P~G~I~~tv~R~  145 (156)
T d2yzca2          74 ----AETHSLALQQTMYEMGRAVIETHPEIDEIKMSLPNKHHFLVDLQPFG----QDNPNEVFYAADRPYGLIEATIQRE  145 (156)
T ss_dssp             ----HHSCBSCHHHHHHHHHHHHHHHCTTEEEEEEEEEECCEEECCCGGGT----CCCSSCEEEECCSSEEEEEEEEEET
T ss_pred             ----ccCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCccceEEecccccC----CCCCCeEECCCCCCCeeEEEEEEcC
Confidence                57899999999999999999999999999999999999999999997    7889999999999999999999999


Q ss_pred             CCC
Q 021738          305 WSK  307 (308)
Q Consensus       305 ~~k  307 (308)
                      .+|
T Consensus       146 ~~~  148 (156)
T d2yzca2         146 GSR  148 (156)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            554
>d2ibaa2 d.96.1.4 (A:137-295) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]} Back     information, alignment and structure
>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]} Back     information, alignment and structure
>d2ibaa1 d.96.1.4 (A:1-136) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]} Back     information, alignment and structure
>d2yzca1 d.96.1.4 (A:11-141) Urate oxidase (uricase) {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1j2ga1 d.96.1.4 (A:7-158) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]} Back     information, alignment and structure
>d1dhna_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1sqla_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1b9la_ d.96.1.3 (A:) 7,8-dihydroneopterin triphosphate epimerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nbua_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase {Bacteria (Mycobacterium tuberculosis) [TaxId: 1773]} Back     information, alignment and structure