Citrus Sinensis ID: 021777
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 307 | ||||||
| 255551537 | 631 | structural constituent of ribosome, puta | 0.928 | 0.451 | 0.873 | 1e-144 | |
| 224110494 | 345 | predicted protein [Populus trichocarpa] | 0.928 | 0.826 | 0.870 | 1e-142 | |
| 224100291 | 345 | predicted protein [Populus trichocarpa] | 0.928 | 0.826 | 0.866 | 1e-142 | |
| 449454434 | 342 | PREDICTED: calcium-binding protein 39-li | 0.928 | 0.833 | 0.842 | 1e-138 | |
| 297807935 | 345 | Mo25 family protein [Arabidopsis lyrata | 0.928 | 0.826 | 0.831 | 1e-137 | |
| 359806928 | 339 | uncharacterized protein LOC100815605 [Gl | 0.928 | 0.840 | 0.842 | 1e-137 | |
| 18419772 | 345 | Mo25-like protein [Arabidopsis thaliana] | 0.928 | 0.826 | 0.824 | 1e-136 | |
| 145362644 | 343 | Mo25-like protein [Arabidopsis thaliana] | 0.928 | 0.830 | 0.824 | 1e-136 | |
| 110735671 | 345 | hypothetical protein [Arabidopsis thalia | 0.928 | 0.826 | 0.824 | 1e-136 | |
| 359477465 | 345 | PREDICTED: calcium-binding protein 39-li | 0.928 | 0.826 | 0.828 | 1e-136 |
| >gi|255551537|ref|XP_002516814.1| structural constituent of ribosome, putative [Ricinus communis] gi|223543902|gb|EEF45428.1| structural constituent of ribosome, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/285 (87%), Positives = 265/285 (92%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
MSFSFFKPSRPKTPLEVVKA K SLMALD KTVVEVKALEKA+EE+EKN V MRC+L GD
Sbjct: 1 MSFSFFKPSRPKTPLEVVKAMKDSLMALDTKTVVEVKALEKALEEVEKNVVAMRCLLCGD 60
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
GEVEPN DQV QL EVCKEDVL L++HKLP LGWEARKDLVHCWS+LLKQKVDS YC V
Sbjct: 61 GEVEPNTDQVSQLVLEVCKEDVLALMIHKLPNLGWEARKDLVHCWSVLLKQKVDSKYCSV 120
Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
++IENHFELLDFLVVCYDNKE+AL+CG+MLRECIKF SLA+YILESASFELFFKFVELP
Sbjct: 121 EYIENHFELLDFLVVCYDNKEIALNCGLMLRECIKFSSLAKYILESASFELFFKFVELPN 180
Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240
FDVASDAFSTFKDLL KH TVV+EYLTAHYDEFFDLYEKLLTS NYVTRRQSLKLLS+FL
Sbjct: 181 FDVASDAFSTFKDLLIKHDTVVAEYLTAHYDEFFDLYEKLLTSPNYVTRRQSLKLLSDFL 240
Query: 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMI 285
LEPPNSHIMKRYILEVR+LKVMMTLLKDSSKNIQISAFHIFKV +
Sbjct: 241 LEPPNSHIMKRYILEVRYLKVMMTLLKDSSKNIQISAFHIFKVFV 285
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110494|ref|XP_002315537.1| predicted protein [Populus trichocarpa] gi|222864577|gb|EEF01708.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224100291|ref|XP_002311818.1| predicted protein [Populus trichocarpa] gi|222851638|gb|EEE89185.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449454434|ref|XP_004144960.1| PREDICTED: calcium-binding protein 39-like [Cucumis sativus] gi|449471842|ref|XP_004153424.1| PREDICTED: calcium-binding protein 39-like [Cucumis sativus] gi|449523591|ref|XP_004168807.1| PREDICTED: calcium-binding protein 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|297807935|ref|XP_002871851.1| Mo25 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317688|gb|EFH48110.1| Mo25 family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|359806928|ref|NP_001241580.1| uncharacterized protein LOC100815605 [Glycine max] gi|255645011|gb|ACU23005.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|18419772|ref|NP_568368.1| Mo25-like protein [Arabidopsis thaliana] gi|21593944|gb|AAM65898.1| unknown [Arabidopsis thaliana] gi|124301170|gb|ABN04837.1| At5g18940 [Arabidopsis thaliana] gi|332005248|gb|AED92631.1| Mo25-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|145362644|ref|NP_974807.2| Mo25-like protein [Arabidopsis thaliana] gi|332005247|gb|AED92630.1| Mo25-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|110735671|dbj|BAE99816.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|359477465|ref|XP_002279174.2| PREDICTED: calcium-binding protein 39-like isoform 1 [Vitis vinifera] gi|297736958|emb|CBI26159.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 307 | ||||||
| TAIR|locus:2144990 | 345 | AT5G18940 [Arabidopsis thalian | 0.928 | 0.826 | 0.824 | 4.8e-126 | |
| UNIPROTKB|E2R8W7 | 341 | CAB39 "Uncharacterized protein | 0.918 | 0.826 | 0.463 | 4.3e-61 | |
| UNIPROTKB|Q29RI6 | 341 | CAB39 "Calcium-binding protein | 0.918 | 0.826 | 0.463 | 5.5e-61 | |
| UNIPROTKB|Q9Y376 | 341 | CAB39 "Calcium-binding protein | 0.918 | 0.826 | 0.463 | 5.5e-61 | |
| RGD|1306390 | 341 | Cab39 "calcium binding protein | 0.918 | 0.826 | 0.463 | 5.5e-61 | |
| MGI|MGI:107438 | 341 | Cab39 "calcium binding protein | 0.918 | 0.826 | 0.463 | 9e-61 | |
| ZFIN|ZDB-GENE-040426-2897 | 343 | cab39l1 "calcium binding prote | 0.921 | 0.825 | 0.435 | 2.4e-60 | |
| ZFIN|ZDB-GENE-041114-204 | 334 | cab39l "calcium binding protei | 0.879 | 0.808 | 0.467 | 6.4e-60 | |
| DICTYBASE|DDB_G0284307 | 363 | DDB_G0284307 "Mo25-like family | 0.745 | 0.630 | 0.458 | 7.8e-60 | |
| UNIPROTKB|E1C407 | 341 | CAB39 "Uncharacterized protein | 0.908 | 0.818 | 0.465 | 1.2e-58 |
| TAIR|locus:2144990 AT5G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 235/285 (82%), Positives = 261/285 (91%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
MSFSFFKPSRPKTP EVVKA + SLMALD KTVVEVKALEKA+EE+EKNF ++R +LSGD
Sbjct: 1 MSFSFFKPSRPKTPQEVVKAIRDSLMALDTKTVVEVKALEKALEEVEKNFSSLRGILSGD 60
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
GE EPNADQ +QLA E CKEDV+ L++HKL ILGWE RKDL+HCWSILLKQKV TYCCV
Sbjct: 61 GETEPNADQAVQLALEFCKEDVVSLVIHKLHILGWETRKDLLHCWSILLKQKVGDTYCCV 120
Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
Q+ E HFELLD LVVCYDNKE+ALHCG MLRECIKFPSLA+YILESA FELFFKFVELP
Sbjct: 121 QYFEEHFELLDSLVVCYDNKEIALHCGSMLRECIKFPSLAKYILESACFELFFKFVELPN 180
Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240
FDVASDAFSTFKDLLTKH +VVSE+LT+HY EFFD+YE+LLTSSNYVTRRQSLKLLS+FL
Sbjct: 181 FDVASDAFSTFKDLLTKHDSVVSEFLTSHYTEFFDVYERLLTSSNYVTRRQSLKLLSDFL 240
Query: 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMI 285
LEPPNSHIMK++ILEVR+LKV+MTLLKDSSKNIQISAFHIFK+ +
Sbjct: 241 LEPPNSHIMKKFILEVRYLKVIMTLLKDSSKNIQISAFHIFKIFV 285
|
|
| UNIPROTKB|E2R8W7 CAB39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q29RI6 CAB39 "Calcium-binding protein 39" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y376 CAB39 "Calcium-binding protein 39" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|1306390 Cab39 "calcium binding protein 39" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:107438 Cab39 "calcium binding protein 39" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040426-2897 cab39l1 "calcium binding protein 39, like 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041114-204 cab39l "calcium binding protein 39-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0284307 DDB_G0284307 "Mo25-like family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C407 CAB39 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 307 | |||
| pfam08569 | 334 | pfam08569, Mo25, Mo25-like | 1e-119 |
| >gnl|CDD|219909 pfam08569, Mo25, Mo25-like | Back alignment and domain information |
|---|
Score = 344 bits (886), Expect = e-119
Identities = 136/286 (47%), Positives = 188/286 (65%), Gaps = 6/286 (2%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
M F F K PKTP ++V++ K L+ LD + EKA EE+ KN ++ +L GD
Sbjct: 1 MPFLFKK--SPKTPSDLVRSLKDQLLKLD---SLSSDNAEKAQEEVSKNLSQLKEILVGD 55
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CC 119
+ EP +Q+ QLA E+ ED+L LL+ L L +E RKD+ +S +L++ +D+
Sbjct: 56 TDAEPTQEQIAQLAQEMYSEDLLYLLIDNLHKLDFETRKDVALIFSNILRRSIDNNSRPT 115
Query: 120 VQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELP 179
V ++ H E+L L+ Y+ E+AL CG MLRECIK +LA+ IL S F FFK+V+L
Sbjct: 116 VDYLVAHPEILSLLLKGYETSEIALTCGDMLRECIKHEALAKIILYSPQFWKFFKYVQLS 175
Query: 180 TFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEF 239
TF++A+DAFSTFKDLLT H +V+E+L +YD FF ++ KLL S+NYVT+RQSLKLL E
Sbjct: 176 TFEIATDAFSTFKDLLTTHKKLVAEFLLNNYDRFFSMFNKLLQSTNYVTKRQSLKLLGEL 235
Query: 240 LLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMI 285
LL+ NS +M +YI LK+MM LL+D SKNIQ AFH+FKV +
Sbjct: 236 LLDRANSKVMTKYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 281
|
Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site cell division in a cell cycle dependent manner. Length = 334 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 307 | |||
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 100.0 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 100.0 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 85.22 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 85.05 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 84.54 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 84.16 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 82.11 |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-113 Score=822.74 Aligned_cols=298 Identities=49% Similarity=0.763 Sum_probs=263.3
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcH
Q 021777 3 FSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDV 82 (307)
Q Consensus 3 ~~f~~~k~~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dl 82 (307)
|.|||+|+||||+|+||+++|+|.+|+ ++ .+++++|++|||+|+|++||+||+|++|++|++|+|+||++|+|++|+
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~-~~--~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl 77 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLD-SK--SDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL 77 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHH-SS---HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhc-cc--cCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence 344445569999999999999999997 22 468889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCchhhhhHHHHHHHhhccccCCcc-chhHHhhhc-HhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHH
Q 021777 83 LILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CCVQFIENH-FELLDFLVVCYDNKEVALHCGIMLRECIKFPSLA 160 (307)
Q Consensus 83 l~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~-p~v~Yl~~~-peil~~Ll~gY~~~dial~~G~mLRecik~e~la 160 (307)
+..||.+|+.||||+|||+++||++++|+++|+++ |+|+|+++| |||+++|++||++||+|++||+|||||+|||++|
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA 157 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999998 999999999 9999999999999999999999999999999999
Q ss_pred HHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhh
Q 021777 161 RYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240 (307)
Q Consensus 161 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelL 240 (307)
++||++++||+||+|++.++||||||||+||+|+||+||++||+||.+|||+||++|++||+|+||||||||||||||||
T Consensus 158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ell 237 (335)
T PF08569_consen 158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELL 237 (335)
T ss_dssp HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeecCCCCCCCccceeeccc
Q 021777 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHFLHAFSFSLPVYISTK 303 (307)
Q Consensus 241 ldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVANP~~~~~~~~~~~~~~~ 303 (307)
+||+|++||+|||+||+|||+||+||+|+|||||+|||||||||||||++++++..-+..|+.
T Consensus 238 ldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~ 300 (335)
T PF08569_consen 238 LDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNRE 300 (335)
T ss_dssp HSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHH
T ss_pred HchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998776666654
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 307 | ||||
| 3zhp_A | 340 | Human Mst3 (stk24) In Complex With Mo25beta Length | 5e-62 | ||
| 3gni_A | 341 | Structure Of Strad And Mo25 Length = 341 | 2e-61 | ||
| 1upk_A | 341 | Crystal Structure Of Mo25 In Complex With A C-Termi | 3e-54 |
| >pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta Length = 340 | Back alignment and structure |
|
| >pdb|3GNI|A Chain A, Structure Of Strad And Mo25 Length = 341 | Back alignment and structure |
| >pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal Peptide Of Strad Length = 341 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 307 | |||
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 1e-109 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 |
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Length = 341 | Back alignment and structure |
|---|
Score = 321 bits (823), Expect = e-109
Identities = 132/288 (45%), Positives = 188/288 (65%), Gaps = 3/288 (1%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
M F F K K+P ++VK K S+ L+ + + + KA EKA EE+ KN V M+ +L G
Sbjct: 1 MPFPFGK--SHKSPADIVKNLKESMAVLEKQDISDKKA-EKATEEVSKNLVAMKEILYGT 57
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
E EP + V QLA E+ +L LV L ++ +E +KD+ ++ +L++++ + V
Sbjct: 58 NEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTV 117
Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
++I +L L+ Y++ E+AL+CGIMLRECI+ LA+ IL S F FF++VE+ T
Sbjct: 118 EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMST 177
Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240
FD+ASDAF+TFKDLLT+H + +E+L HYD FF YEKLL S NYVT+RQSLKLL E L
Sbjct: 178 FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237
Query: 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHF 288
L+ N IM +YI + LK+MM LL+D S+NIQ AFH+FKV + +
Sbjct: 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 307 | |||
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 100.0 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.48 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 96.99 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 96.82 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 96.2 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 95.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 95.61 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 95.04 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 94.78 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 94.47 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 94.03 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 93.77 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 93.6 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 93.37 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 93.3 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 92.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 92.83 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 91.23 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 89.98 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 89.36 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 88.94 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 88.69 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 88.22 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 88.15 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 87.55 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 87.42 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 84.02 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 83.6 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 83.23 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 82.04 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 80.46 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 80.4 |
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-118 Score=855.27 Aligned_cols=299 Identities=43% Similarity=0.693 Sum_probs=271.7
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh
Q 021777 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE 80 (307)
Q Consensus 1 m~~~f~~~k~~ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~ 80 (307)
|+|. |++ +||||+|+||+++|+|.+|+.++. ++++.+|++|||+|+|++||.+|+|++|+||+||+|+||++|+|++
T Consensus 1 ~~m~-F~~-~~ktP~elVr~l~d~l~~l~~~~~-~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~ 77 (341)
T 1upk_A 1 MPFP-FGK-SHKSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNS 77 (341)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred CCCC-CCC-CCCCHHHHHHHHHHHHHHHhcccc-ccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 7888 444 599999999999999999986432 2345578999999999999999999999999999999999999999
Q ss_pred cHHHHHHhcCCCCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHH
Q 021777 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLA 160 (307)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLRecik~e~la 160 (307)
|+|++||.+|++||||+|||+++||++++|+++|+++|+|+||++||||+++|++||+++|+|++||+|||||+|||++|
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcchhHHHhhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhh
Q 021777 161 RYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240 (307)
Q Consensus 161 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelL 240 (307)
++||+|++||+||+|++.|+||||||||+||||+||+||++|||||++|||+||++||+||+|+||||||||||||||||
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhcChhhHHHHHHHhcCCCcCceeehheeeeeeeecCCCCCCCccceeecc
Q 021777 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHFLHAFSFSLPVYIST 302 (307)
Q Consensus 241 ldr~N~~vM~rYis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVANP~~~~~~~~~~~~~~ 302 (307)
+||+|++||+|||+|++|||+||+||+|+|||||+|||||||||||||++++++..-...|+
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr 299 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ 299 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876544444
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 307 | ||||
| d1upka_ | 330 | a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) | 1e-122 |
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 330 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 352 bits (905), Expect = e-122
Identities = 128/274 (46%), Positives = 183/274 (66%), Gaps = 1/274 (0%)
Query: 12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
K+P ++VK K S+ L+ + + + KA EKA EE+ KN V M+ +L G E EP + V
Sbjct: 1 KSPADIVKNLKESMAVLEKQDISDKKA-EKATEEVSKNLVAMKEILYGTNEKEPQTEAVA 59
Query: 72 QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
QLA E+ +L LV L ++ +E +KD+ ++ +L++++ + V++I +L
Sbjct: 60 QLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF 119
Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
L+ Y++ E+AL+CGIMLRECI+ LA+ IL S F FF++VE+ TFD+ASDAF+TF
Sbjct: 120 MLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATF 179
Query: 192 KDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKR 251
KDLLT+H + +E+L HYD FF YEKLL S NYVT+RQSLKLL E LL+ N IM +
Sbjct: 180 KDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTK 239
Query: 252 YILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMI 285
YI + LK+MM LL+D S+NIQ AFH+FKV +
Sbjct: 240 YISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 273
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 307 | |||
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.58 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.21 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 95.83 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 94.87 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 94.58 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 94.26 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 88.91 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 88.48 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 81.01 |
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.9e-117 Score=838.28 Aligned_cols=291 Identities=44% Similarity=0.693 Sum_probs=274.8
Q ss_pred CChHHHHHHHHHHHhhccccchhhHHhhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhcCC
Q 021777 12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLP 91 (307)
Q Consensus 12 ktP~elVr~~~e~l~~l~~~~~~~~~~~~k~~eevsK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~ 91 (307)
|||+|+||+++|+|.+|+.++. ++++++|++|||+|+|++||.||||++|+||+||+|+||++|+|++|+|++||.+||
T Consensus 1 ktP~elVr~~~d~l~~l~~~~~-~~~k~ek~~ee~~K~l~~mK~iL~G~~e~ep~~e~~~qL~~e~~~~d~l~~Li~~L~ 79 (330)
T d1upka_ 1 KSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQ 79 (330)
T ss_dssp CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHSHHHHHHHTGG
T ss_pred CCHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhChHHHHHHhCC
Confidence 7999999999999999997653 468889999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhHHHHHHHhhccccCCccchhHHhhhcHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHHHHHhcchhHHH
Q 021777 92 ILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFEL 171 (307)
Q Consensus 92 ~L~fE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLRecik~e~la~~iL~~~~f~~ 171 (307)
+||||+|||+++||++++|+++|+++|+|+||++||||+++|++||++||+|++||.|||||+|||++|++||++++||+
T Consensus 80 ~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak~iL~s~~f~~ 159 (330)
T d1upka_ 80 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYD 159 (330)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGH
T ss_pred CCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHHHHHccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCchhhhchHHHHHHHhhcChHHHHHHHHhhHHHHHHHHHhhhcCCCceeecchhhhhHHhhcCCCCHHHHHH
Q 021777 172 FFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKR 251 (307)
Q Consensus 172 fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~r 251 (307)
||+|++.|+||||||||+||||+||+||++|||||++|||+||++||+||+|+||||||||||||||+|+||+|++||+|
T Consensus 160 fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~ 239 (330)
T d1upka_ 160 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTK 239 (330)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChhhHHHHHHHhcCCCcCceeehheeeeeeeecCCCCCCCccceeeccc
Q 021777 252 YILEVRFLKVMMTLLKDSSKNIQISAFHIFKVMIFHFLHAFSFSLPVYISTK 303 (307)
Q Consensus 252 Yis~~~NLKl~M~LL~d~sknIq~EAFhVFKvFVANP~~~~~~~~~~~~~~~ 303 (307)
||+|++|||+||+||+|+|||||+|||||||||||||++++++..-...|+.
T Consensus 240 Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~ 291 (330)
T d1upka_ 240 YISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQA 291 (330)
T ss_dssp HTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHH
T ss_pred HhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999998776655554
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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