Citrus Sinensis ID: 021779

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccEEEEEEEcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccc
Coil and Loop (DISEMBL)
msspaggsllFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLalipartiPFAWNLLTAGYIEQTVHGVVVSTLGLLFMgkllepvwgskefLKFIFIVNFLTSLCIFITAVALYYITRLETYLymplsgfqGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYlqkkpetklsgdpsddfafssffpefirpvidPIASIFHRMlcgrrtetsgddhgytlggaslpgsdpieaSRRRERGARALEERLATEKLAAAQSVEESKKDAAENV
Flexible Loop (DISEMBL)
msspaggsLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYtlggaslpgsdpieaSRRRERGARALEERLATeklaaaqsveeskkdaaenv
Low Complexity Region (SEG)
MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGdpsddfafssffpefIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIeasrrrergaraleerlateklaaaQSVEESKKDAAENV
Disordered region (IsUnstruct)
*******SLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQK************DFAFSSFFPEFIRPVIDPIASIFHRMLCGRR**************************************************************
Disordered Region (DISOPRED)
*********LFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRT****************************ERGARAL**************************
Disordered Region (DISEMBL)
MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATE*******************
Disordered Region (DISPRO)
********LLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETS**********************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKDAAENV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q12893	351	Transmembrane protein 115	yes	no	0.912	0.797	0.310	8e-27
Q9WUH1	350	Transmembrane protein 115	yes	no	0.846	0.742	0.323	1e-26
A4FUB8	351	Transmembrane protein 115	yes	no	0.846	0.740	0.332	2e-26
Q12239	342	Uncharacterized membrane	yes	no	0.801	0.719	0.257	3e-15

>sp|Q12893|TM115_HUMAN Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1

 Score =  121 bits (303), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 155/312 (49%), Gaps = 32/312 (10%)

Query: 19  KGLAVVLVGGHILVQLLPASV------------SVLALIPARTIP---FAWNLLTAGYIE 63
           + L  +L    ++V+ L A+V              LA+ P    P   + W L T G +E
Sbjct: 10  QHLGAILASASVVVKALCAAVLFLYLLSFAVDTGCLAVTPGYLFPPNFWIWTLATHGLME 69

Query: 64  QTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVN----FLTSLCIFITAVALYYITR 119
           Q V  V +S   ++  G+LLEP+WG+ E L F  +VN     L +    +T +A + +  
Sbjct: 70  QHVWDVAISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVY 129

Query: 120 LETYLYMPLSGFQGVLAGFLVGIKQIVPDQ-ELYLLKIKAKWLPSLMLLLSIAISFFTAE 178
           L T   + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   T  
Sbjct: 130 LFT---VRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLATLL 186

Query: 179 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 238
            +  L +  FG    W+YLR+ Q+   ++  GD +D FAF++FFPE ++PV+  +A++ H
Sbjct: 187 QSPALASYGFGLLSSWVYLRFYQR--HSRGRGDMADHFAFATFFPEILQPVVGLLANLVH 244

Query: 239 RMLCG----RRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQ 294
            +L      ++T    D    +    SLPG+DP +A RRR+   +AL ERL   K    Q
Sbjct: 245 SLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERL---KRVEDQ 301

Query: 295 SVEESKKDAAEN 306
           S+  S  D  E 
Sbjct: 302 SIWPSMDDDEEE 313

Homo sapiens (taxid: 9606)

>sp|Q9WUH1|TM115_MOUSE Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 145/272 (53%), Gaps = 12/272 (4%)

Query: 42  LALIPARTIP---FAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFI 98
           LA+ P    P   + W L T G +EQ V  V +S   ++  G+LLEP+WG+ E L F  +
Sbjct: 45  LAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLATVVVAGRLLEPLWGALELLIFFSV 104

Query: 99  VNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGFLVGIKQIVPDQ-ELYLLKI 156
           VN    L   +  +  Y  +    YL+ + + G  G L G LV +KQ + D   L + ++
Sbjct: 105 VNVSVGLLGALAYLLTYMASFNLVYLFTIRIHGALGFLGGVLVALKQTMGDCVVLRVPQV 164

Query: 157 KAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDF 216
           +   +P L+L L + +   T   +  L +  FG    W+YLR+ Q+   ++  GD +D F
Sbjct: 165 RVSVVPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQR--HSRGRGDMADHF 222

Query: 217 AFSSFFPEFIRPVIDPIASIFHRMLCG----RRTETSGDDHGYTLGGASLPGSDPIEASR 272
           AF++FFPE ++PV+  +A++ H +L      ++T    D    +    SLPG+DP +A R
Sbjct: 223 AFATFFPEILQPVVGLLANLVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAER 282

Query: 273 RRERGARALEERLA-TEKLAAAQSVEESKKDA 303
           RR+   +AL ERL   E  +A  S+++ +++A
Sbjct: 283 RRQLALKALNERLKRVEDQSAWPSMDDDEEEA 314

Mus musculus (taxid: 10090)

>sp|A4FUB8|TM115_BOVIN Transmembrane protein 115 OS=Bos taurus GN=TMEM115 PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 140/274 (51%), Gaps = 14/274 (5%)

Query: 42  LALIPARTIP---FAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFI 98
           LA+ P    P   + W L T G +EQ V  V +S   ++  G+LLEP+WG+ E L F  +
Sbjct: 45  LAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLATVVVAGRLLEPLWGALELLIFFSV 104

Query: 99  VNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGFLVGIKQIVPDQ-ELYLLKI 156
           VN    L      +  Y  +    YL+ + + G  G L G LV +KQ + D   L + ++
Sbjct: 105 VNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQV 164

Query: 157 KAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDF 216
           +   +P L+L L + +   T   +  L +  FG    W+YLR+ Q+   ++  GD +D F
Sbjct: 165 RVSVVPMLLLGLLLLLRLATLLQSPALASYGFGLISSWVYLRFYQR--HSRGRGDMADHF 222

Query: 217 AFSSFFPEFIRPVIDPIASIFHRMLCG----RRTETSGDDHGYTLGGASLPGSDPIEASR 272
           AF++FFPE ++PV+  +A++ H +L      ++T    D    +    SLPG+DP +A R
Sbjct: 223 AFATFFPEILQPVVGLLANLVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAER 282

Query: 273 RRERGARALEERLATEKLAAAQSVEESKKDAAEN 306
           RR+   +AL ERL   K    QSV  S  D  E 
Sbjct: 283 RRQLALKALNERL---KRVEDQSVWPSMDDDEEE 313

Bos taurus (taxid: 9913)

>sp|Q12239|YO107_YEAST Uncharacterized membrane protein YOL107W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL107W PE=1 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 125/276 (45%), Gaps = 30/276 (10%)

Query: 41  VLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGS-KEFLKFIFIV 99
           +L ++P++   +  +L+ + +I+     VVV+ L L+  G  +E  W S KE  KFI ++
Sbjct: 67  LLQMVPSQIWRYPTSLVLSNFIDTKAWKVVVNLLNLIIGGSFIERNWNSSKEMFKFIIVL 126

Query: 100 NFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLK---- 155
             LT++ I +  + + + +  +  L +PL G   +L GF +  +Q++P+  +  LK    
Sbjct: 127 GSLTNVLIIMLTLLVSFFSN-KVRLDIPLDGNYTILIGFPIIYRQLLPETTIIHLKTPQF 185

Query: 156 ----IKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKK-------- 203
                + K LP  ++              A L ++    +  W YLR+ QK         
Sbjct: 186 LAKNFRFKLLPIFVMFTMTVTQIIWFHHFAQLFSIWVTFFASWSYLRFFQKLAPLNCPSL 245

Query: 204 PETK-------LSGDPSDDFAFSSFFPEFIRPVIDPIAS-IFHRMLCGRRTETSGDDHGY 255
           P T        L GD SD F    FFP+ I+P++ PI + I++ ++   +      D   
Sbjct: 246 PTTNSQGGQEILVGDASDTFQLIYFFPDLIKPILRPIFNFIYNVVVVKFKVIKPFHDIDI 305

Query: 256 TLGG--ASLPGSDPIEA--SRRRERGARALEERLAT 287
            +G   A   G+  I     RRR+   + LEER+  
Sbjct: 306 DIGNTIAESRGAKKIMTVEERRRQLALQVLEERMVN 341

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
118485684	303	unknown [Populus trichocarpa]	0.980	0.993	0.805	1e-140
255585086	308	Transmembrane protein, putative [Ricinus	0.996	0.993	0.792	1e-133
225449084	311	PREDICTED: transmembrane protein 115 [Vi	0.996	0.983	0.762	1e-131
224113005	275	hypothetical protein POPTRDRAFT_659857 [	0.889	0.992	0.815	1e-129
356498564	306	PREDICTED: transmembrane protein 115-lik	0.990	0.993	0.731	1e-128
224097969	275	predicted protein [Populus trichocarpa]	0.889	0.992	0.818	1e-127
297829360	304	hypothetical protein ARALYDRAFT_896969 [	0.990	1.0	0.752	1e-127
388512181	309	unknown [Lotus japonicus]	0.996	0.990	0.709	1e-127
449452106	308	PREDICTED: transmembrane protein 115-lik	0.996	0.993	0.763	1e-127
18398108	304	rhomboid protein-like protein [Arabidops	0.990	1.0	0.745	1e-126

>gi|118485684|gb|ABK94692.1| unknown [Populus trichocarpa]

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/309 (80%), Positives = 274/309 (88%), Gaps = 8/309 (2%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MSSP   GG+ LFTGFTKLCKGLAVVLV  HILVQ+LP +V+ LALIPARTIPF WNL+T
Sbjct: 1   MSSPPILGGASLFTGFTKLCKGLAVVLVTCHILVQILPPAVNYLALIPARTIPFVWNLIT 60

Query: 59  AGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYIT 118
           AGYIEQ+++GVV STL LL MGKLLEPVWGSKEFLKFIFIVNFL S+C+FITA++LYYIT
Sbjct: 61  AGYIEQSIYGVVASTLCLLIMGKLLEPVWGSKEFLKFIFIVNFLISICVFITAISLYYIT 120

Query: 119 RLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 178
           R E YLYMP+SGFQG+LAGFLVGIKQI+PDQEL LL+IKAKW PSLMLL++IAISFFTAE
Sbjct: 121 RQENYLYMPISGFQGILAGFLVGIKQIIPDQELSLLRIKAKWFPSLMLLIAIAISFFTAE 180

Query: 179 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 238
           SAAYLPTLIFGTYM WIYLRY Q+KPETKL GDPSDDFAFSSFFPE +RP+IDPIASIFH
Sbjct: 181 SAAYLPTLIFGTYMSWIYLRYFQRKPETKLRGDPSDDFAFSSFFPESLRPIIDPIASIFH 240

Query: 239 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEE 298
           RMLCG R ETS + HG TLG ASLPGSDPIEA+RRRERGARALEERLAT     A S EE
Sbjct: 241 RMLCG-RFETSTEAHGDTLGDASLPGSDPIEATRRRERGARALEERLAT-----APSAEE 294

Query: 299 SKKDAAENV 307
            K+DA+ENV
Sbjct: 295 LKRDASENV 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585086|ref|XP_002533249.1| Transmembrane protein, putative [Ricinus communis] gi|223526929|gb|EEF29134.1| Transmembrane protein, putative [Ricinus communis]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 283/309 (91%), Gaps = 3/309 (0%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MSSP+  GG+ L++GFT+LCKGLAVVLV GH++VQ+LP+S+S LALIPA+TIPF WNL+T
Sbjct: 1   MSSPSIPGGTALYSGFTRLCKGLAVVLVAGHLIVQILPSSLSYLALIPAKTIPFGWNLIT 60

Query: 59  AGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYIT 118
           AGYIEQ+++GVVVSTL LL MGKLLEPVWGSKEFLKFIFIVNFLTS+C+FITA+ALYYIT
Sbjct: 61  AGYIEQSIYGVVVSTLCLLIMGKLLEPVWGSKEFLKFIFIVNFLTSVCVFITAIALYYIT 120

Query: 119 RLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 178
             E YLYMP+SGFQGVL+GFLVG+KQI+PDQEL +L+IKAKWLPSL LLLSIA+SFFT E
Sbjct: 121 TQENYLYMPISGFQGVLSGFLVGMKQIIPDQELSVLRIKAKWLPSLALLLSIAVSFFTPE 180

Query: 179 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 238
           S  YLPT+IFGTY+ WIYLRYLQ+KPETKL GDP+DDFAFS+FFPEF+RPVIDPIASIFH
Sbjct: 181 SVTYLPTIIFGTYLSWIYLRYLQRKPETKLRGDPNDDFAFSTFFPEFLRPVIDPIASIFH 240

Query: 239 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEE 298
           RMLCG R+ETS +  GYTLGGA LPGSDPIEASRRRERGARALEERLA E+LAAA+S ++
Sbjct: 241 RMLCG-RSETSTEAQGYTLGGAPLPGSDPIEASRRRERGARALEERLAAERLAAARSSDD 299

Query: 299 SKKDAAENV 307
            KKDA+ENV
Sbjct: 300 LKKDASENV 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449084|ref|XP_002275709.1| PREDICTED: transmembrane protein 115 [Vitis vinifera] gi|296086036|emb|CBI31477.3| unnamed protein product [Vitis vinifera]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/312 (76%), Positives = 278/312 (89%), Gaps = 6/312 (1%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MSS A  GG+  F+GFT+LCKGLAVV+VGGH++VQ  P++V+ LALIPARTIPFAWNL+T
Sbjct: 1   MSSSALSGGTGNFSGFTRLCKGLAVVIVGGHVVVQFFPSAVAYLALIPARTIPFAWNLIT 60

Query: 59  AGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYIT 118
           +GYIEQT++G VVST+GLLF+GKLLEP+WG++EFLKFIF+VNFLTS+C+FITA+ALYYIT
Sbjct: 61  SGYIEQTIYGTVVSTVGLLFLGKLLEPIWGTREFLKFIFVVNFLTSVCVFITAIALYYIT 120

Query: 119 RLETYLYMPLSGFQGVLAGFLVGIKQIVPDQEL---YLLKIKAKWLPSLMLLLSIAISFF 175
           R E YLYMPLSGF GVL+GFLVGIKQI+PDQEL    LLKI+A+WLPSLMLLLSIAISFF
Sbjct: 121 RQENYLYMPLSGFHGVLSGFLVGIKQIIPDQELSLFSLLKIRARWLPSLMLLLSIAISFF 180

Query: 176 TAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIAS 235
           T ESAAYLP LIFGTYMGWIYLRYLQ+KPET+L GDPSD+FAFS+FFPEF+RPVIDPI S
Sbjct: 181 TTESAAYLPALIFGTYMGWIYLRYLQRKPETRLKGDPSDEFAFSTFFPEFLRPVIDPIGS 240

Query: 236 IFHRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQS 295
           +F R+ CG R E S +D G+TLGGA LPGSDPIEASRRRERGARALEERLA E+L A +S
Sbjct: 241 VFGRLCCG-RFEISDEDRGHTLGGAPLPGSDPIEASRRRERGARALEERLAVERLTAGES 299

Query: 296 VEESKKDAAENV 307
            +ES +DA E+V
Sbjct: 300 AKESGRDAVEDV 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113005|ref|XP_002316359.1| hypothetical protein POPTRDRAFT_659857 [Populus trichocarpa] gi|222865399|gb|EEF02530.1| hypothetical protein POPTRDRAFT_659857 [Populus trichocarpa]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/276 (81%), Positives = 250/276 (90%), Gaps = 3/276 (1%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MSSP   GG+ LFTGFTKLCKGLAVVLV GHI+VQ+ P++V+ LALIPARTIPFAWNLLT
Sbjct: 1   MSSPPILGGASLFTGFTKLCKGLAVVLVAGHIVVQIFPSAVNYLALIPARTIPFAWNLLT 60

Query: 59  AGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYIT 118
           AGYIEQ+++GVV STL LL MGKLLEPVWGSKEFLKFIFIVNFLTS+C+FITA++LYYIT
Sbjct: 61  AGYIEQSIYGVVASTLCLLIMGKLLEPVWGSKEFLKFIFIVNFLTSVCVFITAISLYYIT 120

Query: 119 RLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 178
           R E YLYMP+SGFQG+LAGFLVG KQI+PDQEL LL++KAKW PSLMLL++I ISFFTAE
Sbjct: 121 RQENYLYMPISGFQGILAGFLVGTKQIIPDQELSLLRLKAKWFPSLMLLIAIVISFFTAE 180

Query: 179 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 238
           SA YLPT+IFGTYM WIYLRY  +KPETKL GDPSDDFAFSSFFPEF+RPVIDPIASIFH
Sbjct: 181 SAKYLPTIIFGTYMSWIYLRYFHRKPETKLRGDPSDDFAFSSFFPEFLRPVIDPIASIFH 240

Query: 239 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRR 274
           RMLCG R ETS + HG+TLGGA LPGSDPIEASRRR
Sbjct: 241 RMLCG-RFETSTEAHGHTLGGAPLPGSDPIEASRRR 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498564|ref|XP_003518120.1| PREDICTED: transmembrane protein 115-like [Glycine max]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/309 (73%), Positives = 267/309 (86%), Gaps = 5/309 (1%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MS+PA  GG+ LF+GFT+LCKGLAVVLV GHI VQ +P++V+ LALIPARTIPFAWNL+T
Sbjct: 1   MSTPALSGGTGLFSGFTRLCKGLAVVLVCGHIAVQFIPSAVNYLALIPARTIPFAWNLIT 60

Query: 59  AGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYIT 118
           AGY+EQ+++GVVVSTL LLF+GKLLEP+WGS+EF KFIF+VN LTS+C+FITA+ALYYIT
Sbjct: 61  AGYVEQSIYGVVVSTLSLLFIGKLLEPIWGSREFFKFIFVVNLLTSVCLFITAIALYYIT 120

Query: 119 RLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 178
           RLETYLYMPLSGF GV++GFLVGIKQI+PDQEL  +KIK KWLPS+ +LLSIAISF+T E
Sbjct: 121 RLETYLYMPLSGFHGVVSGFLVGIKQIIPDQELPFIKIKTKWLPSITVLLSIAISFWTLE 180

Query: 179 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 238
           + AYLPT+I GTY+ WIYLRY Q+KPETK  GD S+DFAFS+FFPEF+RPVIDPIASIFH
Sbjct: 181 ATAYLPTIISGTYISWIYLRYWQRKPETKHRGDLSEDFAFSTFFPEFLRPVIDPIASIFH 240

Query: 239 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEE 298
           RMLCG R + S D  G +L    LPGSD IEASRRRERGARALEERLA E+LA A+   E
Sbjct: 241 RMLCG-RYDASNDGQGNSLESEPLPGSDSIEASRRRERGARALEERLAAERLAVAR--RE 297

Query: 299 SKKDAAENV 307
            +++A ENV
Sbjct: 298 LQREAEENV 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097969|ref|XP_002311100.1| predicted protein [Populus trichocarpa] gi|222850920|gb|EEE88467.1| predicted protein [Populus trichocarpa]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/276 (81%), Positives = 249/276 (90%), Gaps = 3/276 (1%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MSSP   GG+ LFTGFTKLCKGLAVVLV  HILVQ+LP +V+ LALIPARTIPF WNL+T
Sbjct: 1   MSSPPILGGASLFTGFTKLCKGLAVVLVTCHILVQILPPAVNYLALIPARTIPFVWNLIT 60

Query: 59  AGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYIT 118
           AGYIEQ+++GVV STL LL MGKLLEPVWGSKEFLKFIFIVNFL S+C+FITA++LYYIT
Sbjct: 61  AGYIEQSIYGVVASTLCLLIMGKLLEPVWGSKEFLKFIFIVNFLISICVFITAISLYYIT 120

Query: 119 RLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 178
           R E YLYMP+SGFQG+LAGFLVGIKQI+PDQEL LL+IKAKW PSLMLL++IAISFFTAE
Sbjct: 121 RQENYLYMPISGFQGILAGFLVGIKQIIPDQELSLLRIKAKWFPSLMLLIAIAISFFTAE 180

Query: 179 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 238
           SAAYLPTLIFGTYM WIYLRY Q+KPETKL GDPSDDFAFSSFFPE +RP+IDPIASIFH
Sbjct: 181 SAAYLPTLIFGTYMSWIYLRYFQRKPETKLRGDPSDDFAFSSFFPESLRPIIDPIASIFH 240

Query: 239 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRR 274
           RMLCG R ETS + HG TLG ASLPGSDPIEA+RRR
Sbjct: 241 RMLCG-RFETSTEAHGDTLGDASLPGSDPIEATRRR 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829360|ref|XP_002882562.1| hypothetical protein ARALYDRAFT_896969 [Arabidopsis lyrata subsp. lyrata] gi|297328402|gb|EFH58821.1| hypothetical protein ARALYDRAFT_896969 [Arabidopsis lyrata subsp. lyrata]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/307 (75%), Positives = 266/307 (86%), Gaps = 3/307 (0%)

Query: 1   MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAG 60
           MSSP  G+ +FT FTKLCKGLA+VLV GH++VQ +PA+V  LALIPARTIPFAWNL+T+G
Sbjct: 1   MSSP--GTSMFTNFTKLCKGLALVLVVGHLVVQFIPATVPYLALIPARTIPFAWNLITSG 58

Query: 61  YIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRL 120
           Y E +V+GVV ST+ LLFMGK LEPVWGSKEFLKFIF+VNFL  LC+F+TA+ALYYITRL
Sbjct: 59  YFELSVYGVVFSTVSLLFMGKFLEPVWGSKEFLKFIFVVNFLAYLCVFVTAIALYYITRL 118

Query: 121 ETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESA 180
           E YLYMP +GF GVLAG LVGIKQI+PDQE+ LLKIKAKWLPS+ML+LSIA SFFT  SA
Sbjct: 119 EIYLYMPFAGFHGVLAGLLVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLNSA 178

Query: 181 AYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRM 240
           AYLPTLIFGTYMGW+YLRYLQ++PETKL GDPSDDFAFS+FFPEF+RPVIDPIA IFHRM
Sbjct: 179 AYLPTLIFGTYMGWLYLRYLQRRPETKLRGDPSDDFAFSTFFPEFLRPVIDPIALIFHRM 238

Query: 241 LCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESK 300
           LCGR   TS +DHGY+  GA LPGSD  EASRRRERGARALEERL TE+L  A++ +E +
Sbjct: 239 LCGRSNATS-EDHGYSTSGAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQ 297

Query: 301 KDAAENV 307
            DA ++V
Sbjct: 298 SDALDSV 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512181|gb|AFK44152.1| unknown [Lotus japonicus]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/310 (70%), Positives = 260/310 (83%), Gaps = 4/310 (1%)

Query: 1   MSSP---AGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLL 57
           MS+P   + G+ LF+GFT+LCKGLAVVLVG H+L+   P++V+ LALIPARTIPFAWNL+
Sbjct: 1   MSTPTTVSWGTGLFSGFTRLCKGLAVVLVGSHLLIHFFPSAVNYLALIPARTIPFAWNLI 60

Query: 58  TAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYI 117
           TAGYIEQTV+GVVVST  LLF GKLLEP+WGS EF KFIF+VNFLTS+ +FITA+ALYYI
Sbjct: 61  TAGYIEQTVYGVVVSTFSLLFFGKLLEPIWGSGEFCKFIFVVNFLTSVSVFITAIALYYI 120

Query: 118 TRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTA 177
           TR E YLYMPLSGF GV++GFLVG+KQI+PDQEL  +KIK KWLPS+ LLLSIA+ F+T 
Sbjct: 121 TRQENYLYMPLSGFHGVISGFLVGLKQIIPDQELPFIKIKTKWLPSITLLLSIAVCFWTL 180

Query: 178 ESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIF 237
           E+ +YLPT++ GTY+ WIYLRY Q+KPETK  GDPS+DFAFSSFFPE +RP IDPIASIF
Sbjct: 181 EATSYLPTIVSGTYISWIYLRYWQRKPETKHRGDPSEDFAFSSFFPELLRPFIDPIASIF 240

Query: 238 HRMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVE 297
           HRMLCG R++ S D   Y+LG   LPGSD +EASRRRERGARALEERLA E+L AA++  
Sbjct: 241 HRMLCG-RSDASNDGQDYSLGSEPLPGSDSVEASRRRERGARALEERLAAERLGAARTAG 299

Query: 298 ESKKDAAENV 307
           ES  D AENV
Sbjct: 300 ESHSDTAENV 309

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452106|ref|XP_004143801.1| PREDICTED: transmembrane protein 115-like [Cucumis sativus] gi|449529888|ref|XP_004171930.1| PREDICTED: transmembrane protein 115-like [Cucumis sativus]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/309 (76%), Positives = 276/309 (89%), Gaps = 3/309 (0%)

Query: 1   MSSPA--GGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLT 58
           MS+P+  GGS  FTGFTKLCKG+AVVL+GGHILVQL P  V+ LALIPARTIPFAWNLLT
Sbjct: 1   MSTPSVPGGSGSFTGFTKLCKGIAVVLIGGHILVQLFPVVVNYLALIPARTIPFAWNLLT 60

Query: 59  AGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYIT 118
           AGYIEQ+++GVVVST+GLLF+GKLLEP+WGS+EFLKFIF+VNFLTSLC+FITA+ALYYIT
Sbjct: 61  AGYIEQSIYGVVVSTVGLLFVGKLLEPIWGSREFLKFIFVVNFLTSLCVFITAIALYYIT 120

Query: 119 RLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAE 178
           + E+YLY+P+SGF G+LAGFLVGIKQ++PDQEL +LK+KAKWLPSL +LLSIA+SF+T  
Sbjct: 121 QEESYLYLPVSGFYGILAGFLVGIKQMIPDQELPVLKLKAKWLPSLAVLLSIAVSFWTTG 180

Query: 179 SAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFH 238
           +A YLPT+IFGTY+ WIYLRY Q+KPE KL GDPSDDFAFS+FFPE +RPVIDPIASIFH
Sbjct: 181 AATYLPTIIFGTYISWIYLRYWQRKPEAKLKGDPSDDFAFSTFFPELLRPVIDPIASIFH 240

Query: 239 RMLCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEE 298
           RMLCG R+E+  +   YT  GA LPGSDP+EASRRRERGARALEERLA E+LAAA+S +E
Sbjct: 241 RMLCG-RSESPDNAEDYTAAGAPLPGSDPVEASRRRERGARALEERLAAERLAAARSAQE 299

Query: 299 SKKDAAENV 307
           S KDA ENV
Sbjct: 300 SGKDATENV 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398108|ref|NP_566326.1| rhomboid protein-like protein [Arabidopsis thaliana] gi|21537325|gb|AAM61666.1| unknown [Arabidopsis thaliana] gi|25083369|gb|AAN72066.1| expressed protein [Arabidopsis thaliana] gi|31711794|gb|AAP68253.1| At3g07950 [Arabidopsis thaliana] gi|332641103|gb|AEE74624.1| rhomboid protein-like protein [Arabidopsis thaliana]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/307 (74%), Positives = 264/307 (85%), Gaps = 3/307 (0%)

Query: 1   MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAG 60
           MSSP  G+ +FT FTKLCKGLA+VLV GH++VQ +PA+V  LALIPARTIPFAWNL+T+G
Sbjct: 1   MSSP--GTSMFTNFTKLCKGLALVLVVGHLVVQFIPATVPYLALIPARTIPFAWNLITSG 58

Query: 61  YIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRL 120
           Y E +V+GVV ST+ LLFMGK LEPVWGS EFLKFIF+VNFLT LC+F+TA+ALYYITRL
Sbjct: 59  YFELSVYGVVFSTVSLLFMGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRL 118

Query: 121 ETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESA 180
           E YLYMP +GF GVLAG LVGIKQI+PDQE+ LLKIKAKWLPS+ML+LSIA SFFT +SA
Sbjct: 119 EVYLYMPFAGFHGVLAGLLVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLDSA 178

Query: 181 AYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRM 240
           AYLPTLIFGTYMGW+YLRYLQ++PETKL GDPSDDFAFS+FFPE +RPVIDPIA IFHRM
Sbjct: 179 AYLPTLIFGTYMGWLYLRYLQRRPETKLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRM 238

Query: 241 LCGRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESK 300
           LCGR   TS +DH Y+  GA LPGSD  EASRRRERGARALEERL TE+L  A++ +E +
Sbjct: 239 LCGRSNATS-EDHDYSTSGAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQ 297

Query: 301 KDAAENV 307
            D  +NV
Sbjct: 298 SDGLDNV 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2077377	304	AT3G07950 "AT3G07950" [Arabido	0.990	1.0	0.635	6.2e-101
DICTYBASE|DDB_G0278061	288	tmem115 "transmembrane protein	0.615	0.656	0.324	5e-28
MGI|MGI:1930765	350	Tmem115 "transmembrane protein	0.827	0.725	0.275	4.7e-19
UNIPROTKB|F1SJ20	351	TMEM115 "Uncharacterized prote	0.827	0.723	0.279	4.8e-19
RGD|1310540	350	Tmem115 "transmembrane protein	0.827	0.725	0.275	6.1e-19
UNIPROTKB|Q12893	351	TMEM115 "Transmembrane protein	0.762	0.666	0.286	6.3e-19
UNIPROTKB|H9L111	258	H9L111 "Uncharacterized protei	0.674	0.802	0.302	6.5e-19
UNIPROTKB|A4FUB8	351	TMEM115 "Transmembrane protein	0.762	0.666	0.286	2.5e-18
UNIPROTKB|E2QWQ9	351	TMEM115 "Uncharacterized prote	0.762	0.666	0.286	2.5e-18
ZFIN|ZDB-GENE-050913-157	361	tmem115 "transmembrane protein	0.755	0.642	0.282	3.3e-17

TAIR|locus:2077377 AT3G07950 "AT3G07950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 195/307 (63%), Positives = 228/307 (74%)

Query:     1 MSSPAGGSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAG 60
             MSSP  G+ +FT FTKLCKGLA+VLV GH++VQ +PA+V  LALIPARTIPFAWNL+T+G
Sbjct:     1 MSSP--GTSMFTNFTKLCKGLALVLVVGHLVVQFIPATVPYLALIPARTIPFAWNLITSG 58

Query:    61 YIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRL 120
             Y E +V+GVV ST+ LLFMGK LEPVWGS EFLKFIF+VNFLT LC+F+TA+ALYYITRL
Sbjct:    59 YFELSVYGVVFSTVSLLFMGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRL 118

Query:   121 ETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLSIAISFFTAESA 180
             E YLYMP +GF GVLAG LVGIKQI+PDQE+ LLKIKAKWLPS+ML+LSIA SFFT +SA
Sbjct:   119 EVYLYMPFAGFHGVLAGLLVGIKQIIPDQEILLLKIKAKWLPSIMLILSIASSFFTLDSA 178

Query:   181 AYLPTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRM 240
             AYLPTLIFGTYMGW+YLRYLQ++PETKL G               +RPVIDPIA IFHRM
Sbjct:   179 AYLPTLIFGTYMGWLYLRYLQRRPETKLRGDPSDDFAFSTFFPELLRPVIDPIALIFHRM 238

Query:   241 LCGRRTETSGDDHGYTLGGASLPGSDPIXXXXXXXXXXXXXXXXXXXXXXXXXQSVEESK 300
             LCGR   TS +DH Y+  GA LPGSD                           ++ +E +
Sbjct:   239 LCGRSNATS-EDHDYSTSGAPLPGSDSAEASRRRERGARALEERLGTERLVPARNKDELQ 297

Query:   301 KDAAENV 307
              D  +NV
Sbjct:   298 SDGLDNV 304

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

DICTYBASE|DDB_G0278061 tmem115 "transmembrane protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 63/194 (32%), Positives = 106/194 (54%)

Query:    52 FAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITA 111
             + W   TA   E ++   + + + LLF+GK LEP+WGS+EF+KFI +V F +SLC F   
Sbjct:    12 YLWTFFTASLTETSIISGIFNIVALLFIGKYLEPIWGSREFIKFILVVIFFSSLCSFFFF 71

Query:   112 VALY-YITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQEL--YLLKIKAKWLPSLMLLL 168
             V  + +   ++  +   + GF GV+A F V +KQ++ +QE   +L+KI+AKW+P +++L 
Sbjct:    72 VFKFMFFGGIDLIMKANVCGFSGVIAAFSVALKQLITEQEFNFFLIKIRAKWIPFILILF 131

Query:   169 SIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRP 228
              + +  F          +I+G ++ WIYLR+ Q K   K  G               ++ 
Sbjct:   132 RVIVFSFIGFQDRSFTLVIYGVFIAWIYLRFYQVKSGVK--GDLNESFSFYTFFPDPVQA 189

Query:   229 VIDPIASIFHRMLC 242
              I  I++I  ++LC
Sbjct:   190 PIKVISNIVFKILC 203

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1930765 Tmem115 "transmembrane protein 115" [Mus musculus (taxid:10090)]

 Score = 229 (85.7 bits), Expect = 4.7e-19, P = 4.7e-19
 Identities = 75/272 (27%), Positives = 126/272 (46%)

Query:     7 GSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIP---FAWNLLTAGYIE 63
             G++L +  + + K L  V++  ++L          LA+ P    P   + W L T G +E
Sbjct:    13 GAILASA-SVVVKALCAVVLFLYLLS--FAVDTGCLAVTPGYLFPPNFWIWTLATHGLME 69

Query:    64 QTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-T 122
             Q V  V +S   ++  G+LLEP+WG+ E L F  +VN    L +   A  L Y+      
Sbjct:    70 QHVWDVAISLATVVVAGRLLEPLWGALELLIFFSVVNVSVGL-LGALAYLLTYMASFNLV 128

Query:   123 YLY-MPLSGFQGVLAGFLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESA 180
             YL+ + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   T   +
Sbjct:   129 YLFTIRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLALLLLLRLATLLQS 188

Query:   181 AYLPTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRM 240
               L +  FG    W+YLR+ Q+    +  G               ++PV+  +A++ H +
Sbjct:   189 PALASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGL 246

Query:   241 L-----CGRRTETSGDDHGYTLGGASLPGSDP 267
             L     C ++T    D    +    SLPG+DP
Sbjct:   247 LVKVKIC-QKTVKRYDVGAPSSITISLPGTDP 277

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SJ20 TMEM115 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 229 (85.7 bits), Expect = 4.8e-19, P = 4.8e-19
 Identities = 76/272 (27%), Positives = 127/272 (46%)

Query:     7 GSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIP---FAWNLLTAGYIE 63
             G++L +  + + K L V ++  ++L        S LA+ P    P   + W L T G +E
Sbjct:    13 GAILASA-SVVVKALCVAVLFLYLLS--FAVDTSCLAVTPGYLFPPNFWIWTLATHGLME 69

Query:    64 QTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-T 122
             Q V  V +S   ++  G+LLEP+WG+ E L F  +VN    L +   A  L Y+      
Sbjct:    70 QHVWDVAISLATVVVAGRLLEPLWGALELLIFFSVVNVSVGL-LGAFAYLLTYMASFNLV 128

Query:   123 YLY-MPLSGFQGVLAGFLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESA 180
             YL+ + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   T   +
Sbjct:   129 YLFTIRIHGSLGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQS 188

Query:   181 AYLPTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRM 240
               L +  FG    W+YLR+ Q+    +  G               ++PV+  +A++ H +
Sbjct:   189 PALASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGL 246

Query:   241 L-----CGRRTETSGDDHGYTLGGASLPGSDP 267
             L     C ++T    D    +    SLPG+DP
Sbjct:   247 LVKVKIC-QKTVKRYDVGAPSSITISLPGTDP 277

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1310540 Tmem115 "transmembrane protein 115" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 6.1e-19, P = 6.1e-19
 Identities = 75/272 (27%), Positives = 126/272 (46%)

Query:     7 GSLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIP---FAWNLLTAGYIE 63
             G++L +  + + K L  V++  ++L          LA+ P    P   + W L T G +E
Sbjct:    13 GAILASA-SVVVKALCAVVLFLYLLS--FAVDTGCLAVTPGYLFPPNFWIWTLATHGLME 69

Query:    64 QTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-T 122
             Q V  V +S   ++  G+LLEP+WG+ E L F  +VN    L +   A  L Y+      
Sbjct:    70 QHVWDVAISLATVVVAGRLLEPLWGALELLIFFSVVNVSVGL-LGAFAYLLTYMASFNLV 128

Query:   123 YLY-MPLSGFQGVLAGFLVGIKQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESA 180
             YL+ + + G  G L G LV +KQ + D   L + +++   +P L+L L + +   T   +
Sbjct:   129 YLFTIRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLALLLLLRLATLLQS 188

Query:   181 AYLPTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRM 240
               L +  FG    W+YLR+ Q+    +  G               ++PV+  +A++ H +
Sbjct:   189 PALASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGL 246

Query:   241 L-----CGRRTETSGDDHGYTLGGASLPGSDP 267
             L     C ++T    D    +    SLPG+DP
Sbjct:   247 LVKVKIC-QKTVKRYDVGAPSSITISLPGTDP 277

GO:0001302 "replicative cell aging" evidence=IEP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q12893 TMEM115 "Transmembrane protein 115" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 6.3e-19, P = 6.3e-19
 Identities = 72/251 (28%), Positives = 117/251 (46%)

Query:    30 ILVQLLPASVSV--LALIPARTIP---FAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLE 84
             + + LL  +V    LA+ P    P   + W L T G +EQ V  V +S   ++  G+LLE
Sbjct:    31 LFLYLLSFAVDTGCLAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLTTVVVAGRLLE 90

Query:    85 PVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-TYLY-MPLSGFQGVLAGFLVGI 142
             P+WG+ E L F  +VN    L +   A  L Y+      YL+ + + G  G L G LV +
Sbjct:    91 PLWGALELLIFFSVVNVSVGL-LGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGVLVAL 149

Query:   143 KQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQ 201
             KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+YLR+ Q
Sbjct:   150 KQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQ 209

Query:   202 KKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETSGDDHGYT 256
             +    +  G               ++PV+  +A++ H +L     C ++T    D    +
Sbjct:   210 RHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKIC-QKTVKRYDVGAPS 266

Query:   257 LGGASLPGSDP 267
                 SLPG+DP
Sbjct:   267 SITISLPGTDP 277

GO:0016021 "integral to membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008285 "negative regulation of cell proliferation" evidence=NAS

UNIPROTKB|H9L111 H9L111 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 68/225 (30%), Positives = 108/225 (48%)

Query:    54 WNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVN----FLTSLCIFI 109
             W LLT G +E+   GV +S   +   G+LLEP WG+ E L F  +V+     L +   F+
Sbjct:    34 WTLLTHGLVERRAAGVALSLGTVAAAGRLLEPRWGALELLVFFAVVHASVGLLGAAAYFL 93

Query:   110 TAVALYYITRLETYLY-MPLSGFQGVLAGFLVGIKQIVPDQE-LYLLKIKAKWLPSLMLL 167
             T  A +++     YL+ + + G  G LAG LV +KQ + D   L + +++ K +P L+LL
Sbjct:    94 TYAATFHVA----YLFDVHIHGGLGFLAGVLVALKQTMGDSTVLRVPQVRMKAVPVLLLL 149

Query:   168 LSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGXXXXXXXXXXXXXXXIR 227
             L  A+   T   +  L +  FG    W+YLR+ Q+    +  G               ++
Sbjct:   150 LLAALRLATLIESPALASYGFGLLSSWVYLRFYQRHSRGR--GDMSDHFAFATFFPEILQ 207

Query:   228 PVIDPIASIFHRML-----CGRRTETSGDDHGYTLGGASLPGSDP 267
             P +   A++ H +L     C R+T    D    +    SLPG+DP
Sbjct:   208 PAVGLAANLVHTLLVKVRLC-RKTVKRYDVGAPSSITISLPGTDP 251

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|A4FUB8 TMEM115 "Transmembrane protein 115" [Bos taurus (taxid:9913)]

 Score = 223 (83.6 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 72/251 (28%), Positives = 117/251 (46%)

Query:    30 ILVQLLPASVSV--LALIPARTIP---FAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLE 84
             + + LL  +V    LA+ P    P   + W L T G +EQ V  V +S   ++  G+LLE
Sbjct:    31 LFLYLLSFAVDTGCLAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLATVVVAGRLLE 90

Query:    85 PVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-TYLY-MPLSGFQGVLAGFLVGI 142
             P+WG+ E L F  +VN    L +   A  L Y+      YL+ + + G  G L G LV +
Sbjct:    91 PLWGALELLIFFSVVNVSVGL-LGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGVLVAL 149

Query:   143 KQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQ 201
             KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+YLR+ Q
Sbjct:   150 KQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQSPALASYGFGLISSWVYLRFYQ 209

Query:   202 KKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETSGDDHGYT 256
             +    +  G               ++PV+  +A++ H +L     C ++T    D    +
Sbjct:   210 RHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKIC-QKTVKRYDVGAPS 266

Query:   257 LGGASLPGSDP 267
                 SLPG+DP
Sbjct:   267 SITISLPGTDP 277

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QWQ9 TMEM115 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 72/251 (28%), Positives = 117/251 (46%)

Query:    30 ILVQLLPASVSV--LALIPARTIP---FAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLE 84
             + + LL  +V    LA+ P    P   + W L T G +EQ V  V +S   ++  G+LLE
Sbjct:    31 LFLYLLSFAVDTGCLAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLATVVVAGRLLE 90

Query:    85 PVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLE-TYLY-MPLSGFQGVLAGFLVGI 142
             P+WG+ E L F  +VN    L +   A  L Y+      YL+ + + G  G L G LV +
Sbjct:    91 PLWGALELLIFFSVVNVSVGL-LGAFAYLLTYMASFNLVYLFTIRIHGALGFLGGVLVAL 149

Query:   143 KQIVPD-QELYLLKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQ 201
             KQ + D   L + +++   +P L+L L + +   T   +  L +  FG    W+YLR+ Q
Sbjct:   150 KQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQ 209

Query:   202 KKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETSGDDHGYT 256
             +    +  G               ++PV+  +A++ H +L     C ++T    D    +
Sbjct:   210 RHSRGR--GDMADHFAFATFFPEILQPVVGLLANLVHGLLVKVKIC-QKTVKRYDVGAPS 266

Query:   257 LGGASLPGSDP 267
                 SLPG+DP
Sbjct:   267 SITISLPGTDP 277

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-050913-157 tmem115 "transmembrane protein 115" [Danio rerio (taxid:7955)]

 Score = 214 (80.4 bits), Expect = 3.3e-17, P = 3.3e-17
 Identities = 72/255 (28%), Positives = 117/255 (45%)

Query:    30 ILVQLLPASVS---VLALIPARTIP---FAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLL 83
             IL+ LL  + +   +L + P    P   + W LLT   +EQ V G+ V+   ++  G+LL
Sbjct:    31 ILLYLLSWAANTPYLLGVTPGFLFPPNFWIWTLLTRAVVEQHVFGMAVNIATVMVAGRLL 90

Query:    84 EPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLY-MPLSGFQGVLAGFLVGI 142
             EP+WG+ E L F  +VN    L   ++ +  Y  T    YL+ + + G    L G LV +
Sbjct:    91 EPLWGALELLIFFAVVNVAAGLLSGLSYLFTYAATFDLDYLFAVRVYGAPAFLGGVLVAL 150

Query:   143 KQIVPDQE-LYLLKIKAKWLPSLMLLLSIAISFFTA--ESAAYLPTLIFGTYMGWIYLRY 199
             KQ   D   L + +++ K  P+L LL +IA+       +++A L    +G   GW+YLR+
Sbjct:   151 KQTAGDTTVLRVPQVRLKAAPALALL-AIAVLRLAGLLDTSAPLAACGYGALSGWVYLRF 209

Query:   200 LQKKPETKLSGXXXXXXXXXXXXXXXIRPVIDPIASIFHRML-----CGRRTETS--GDD 252
              Q+    +  G               ++P +   A + H  L     C +  +    G  
Sbjct:   210 YQRHSRGR--GDMSDHFAFASFFPEALQPAVGFAAGLVHAALVKIKICRKMVKRYDVGAP 267

Query:   253 HGYTLGGASLPGSDP 267
                T+   SLPG+DP
Sbjct:   268 SSITI---SLPGTDP 279

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
pfam08551	99	pfam08551, DUF1751, Eukaryotic integral membrane p	9e-39

>gnl|CDD|219898 pfam08551, DUF1751, Eukaryotic integral membrane protein (DUF1751)

 Score =  131 bits (332), Expect = 9e-39
 Identities = 54/99 (54%), Positives = 70/99 (70%)

Query: 46  PARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSL 105
           P  T P+ W LLT+G++EQ V G +VS + LL  GK LE +WGSKE LKFI +VN +T+L
Sbjct: 1   PGYTFPYPWTLLTSGFVEQNVWGFLVSLVTLLLGGKYLERLWGSKELLKFILVVNVITNL 60

Query: 106 CIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQ 144
            +F+  + LY ITR E YL +P+SG  G+LAGFLV  KQ
Sbjct: 61  LVFLYYLLLYMITRSERYLDVPISGGYGILAGFLVAFKQ 99

This domain is found in eukaryotic integral membrane proteins. YOL107W, a Saccharomyces cerervisiae protein, has been shown to localise COP II vesicles. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
KOG2890	326	consensus Predicted membrane protein [Function unk	100.0
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	99.9
PTZ00101	278	rhomboid-1 protease; Provisional	99.86
COG0705	228	Membrane associated serine protease [Amino acid tr	99.84
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.82
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.7
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.63
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.38
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	99.23
KOG0858	239	consensus Predicted membrane protein [Function unk	98.97
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	98.79
KOG2980	310	consensus Integral membrane protease of the rhombo	98.65
COG5291	313	Predicted membrane protein [Function unknown]	97.95
KOG4463	323	consensus Uncharacterized conserved protein [Funct	97.64

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=2e-64  Score=452.89  Aligned_cols=293  Identities=40%  Similarity=0.629  Sum_probs=257.8

Q ss_pred             CcCCchHHHHHHHHHHHHHHHHHhhh----hhhhcceeeecCccccccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhh
Q 021779           10 LFTGFTKLCKGLAVVLVGGHILVQLL----PASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEP   85 (307)
Q Consensus        10 ~~~~~~~~t~~li~~~~~v~~l~~~~----~~~~~~l~l~P~~~~~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~   85 (307)
                      +..+...+++.||++...+|+++..-    ....+.+++.|++.+.+|||++|++|+|.|.|.+++|.++|.+.|+.+|+
T Consensus        20 ~l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p~y~lvp~~~~~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp   99 (326)
T KOG2890|consen   20 LLLNLEVVVSAICVLTLFGYILSFGNFTILLATLPGYQLVPNALFFFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEP   99 (326)
T ss_pred             HhhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCcchhhhhHHHHhcchhhhhHHHHHHHHHheeecceeecc
Confidence            34456678889999999999998652    23568899999999999999999999999999999999999999999999


Q ss_pred             hhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHccCCeEEE---eccccchHH
Q 021779           86 VWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIKAKWLP  162 (307)
Q Consensus        86 ~wGs~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~ql~P~~~v~l---~~ir~k~lp  162 (307)
                      .||+.|+++||.+++...+++..+.+++.|+++.|..+++.+++|+.|+++|++||++|++||+.+..   .++..|++|
T Consensus       100 ~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP  179 (326)
T KOG2890|consen  100 NWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRFLYAHLP  179 (326)
T ss_pred             CCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchhhhhhhCC
Confidence            99999999999999999999999999999999999889988999999999999999999999998875   566677899


Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCCCCcccccccccccccccccccccceeeee
Q 021779          163 SLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIFHRMLC  242 (307)
Q Consensus       163 ~~~l~~~~~~~~~~~~~~~~~~~~l~G~~~gw~Ylrf~q~~~~~~~~GD~s~~F~f~~fFP~~~~~~~~~i~~~~~~~~c  242 (307)
                      ++.+.++++.++......+.++....|.++||.|+||||+||++..|||+||+|+|++|||+.+||.+++++|.+|+++|
T Consensus       180 ~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~~~~~rGD~Sd~F~fvsFFP~v~qp~~~li~n~~~~~l~  259 (326)
T KOG2890|consen  180 LLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHPTDELRGDCSDSFTFVSFFPEVLQPFFHLIANTIYRILV  259 (326)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCCcccccCCchhceehhhhchhhhhHHHHHHHHHHHHHHH
Confidence            99998888888776555666777899999999999999999988899999999999999999999999999999999995


Q ss_pred             cCcC--CccCC-CCCCccCCCCCCCCCchhhhHHHHHHHHHHHHHHhhchhhhhccccccccc
Q 021779          243 GRRT--ETSGD-DHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLAAAQSVEESKKD  302 (307)
Q Consensus       243 ~~~~--~~~~~-~~~~~~~~~~lpg~~~~eaeRRR~~AlkaL~eRl~~~~~~~~~~~~~~~~~  302 (307)
                      ++..  ++..| +.+.+..++++||.|++|||||||+|||||||||++..++++++.++.+++
T Consensus       260 ~~~~~~~~~~d~~~~~~s~~~~lpg~d~~d~eRRRQ~alkaL~eRl~~~~~~p~~~~~~~~~~  322 (326)
T KOG2890|consen  260 RMGVVKKPHVDIDLDSGSVGANLPGLDPKDAERRRQLALKALEERLKKTRTAPVASYDEWDDG  322 (326)
T ss_pred             HhccccccceecccCcccccccCCCCChhHHHHHHHHHHHHHHHHhcCcccCccccccchhhc
Confidence            5432  11112 234455568999999999999999999999999999999988777766643

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=99.90  E-value=1.3e-24  Score=170.38  Aligned_cols=99  Identities=53%  Similarity=1.045  Sum_probs=95.9

Q ss_pred             cCccccccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021779           46 PARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLY  125 (307)
Q Consensus        46 P~~~~~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~  125 (307)
                      |++.+++|||++|+.|+|.|++.+++|.+.+++.||++||.||++|+++|++++++++|++.++.+++.|.+++++.+++
T Consensus         1 P~~~~~~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~   80 (99)
T PF08551_consen    1 PGRSFPYPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLF   80 (99)
T ss_pred             CCceeeehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeE
Confidence            78888999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             ccccchHHHHHHHHHHHHH
Q 021779          126 MPLSGFQGVLAGFLVGIKQ  144 (307)
Q Consensus       126 ~~~~G~sg~i~gllva~~q  144 (307)
                      .+++|.+|+++|++||+||
T Consensus        81 ~~i~G~~~~~~g~lVa~kQ   99 (99)
T PF08551_consen   81 VPISGFMGVLAGFLVAFKQ   99 (99)
T ss_pred             EEecCcHHhHhheEEEEeC
Confidence            8999999999999999997

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.86  E-value=4.3e-21  Score=176.00  Aligned_cols=178  Identities=12%  Similarity=0.082  Sum_probs=124.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhhh-------h--hhcce-eeecCccc-cccchhhhhhhccCCHHHHHHHHHHHHHHh
Q 021779           12 TGFTKLCKGLAVVLVGGHILVQLLP-------A--SVSVL-ALIPARTI-PFAWNLLTAGYIEQTVHGVVVSTLGLLFMG   80 (307)
Q Consensus        12 ~~~~~~t~~li~~~~~v~~l~~~~~-------~--~~~~l-~l~P~~~~-~~~W~l~T~~F~h~~~~hll~n~l~L~~~G   80 (307)
                      ..++++++.|+++++++|+++....       +  ....+ ++.|.... +|+||++|++|+|.+++|+++||++++.+|
T Consensus        50 f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G  129 (278)
T PTZ00101         50 FTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMG  129 (278)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            4678899999999999999986532       1  22223 44554443 799999999999999999999999999999


Q ss_pred             HhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHccCCeEEEeccccch
Q 021779           81 KLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKW  160 (307)
Q Consensus        81 ~~lE~~wGs~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~ql~P~~~v~l~~ir~k~  160 (307)
                      ..+|+.||+++|+..|+++|+++|+++.+.       ...     ....|+||+++|++.++....-..... .+.|.+.
T Consensus       130 ~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~-------~~~-----~~svGASgAifGLiGa~~~~lil~w~~-~~~~~~~  196 (278)
T PTZ00101        130 FTLEKNYGIVKIIILYFLTGIYGNILSSSV-------TYC-----PIKVGASTSGMGLLGIVTSELILLWHV-IRHRERV  196 (278)
T ss_pred             HHHHHHHChHHHHHHHHHHHHHHHHHHHHH-------ccC-----CcEEehhHHHHHHHHHHHHHHHHHHHh-hccHHHH
Confidence            999999999999999999999999986431       111     246899999999998875321000000 1222233


Q ss_pred             HHHH--HHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHHHhhcC
Q 021779          161 LPSL--MLLLSIAISFF-TAESAAYLPTLIFGTYMGWIYLRYLQKK  203 (307)
Q Consensus       161 lp~~--~l~~~~~~~~~-~~~~~~~~~~~l~G~~~gw~Ylrf~q~~  203 (307)
                      +..+  +.++.+.+.+. ..+++++.+ |++|++.|++....+.++
T Consensus       197 ~~~~i~~~li~~~l~~~~~g~~Id~~a-HlGG~i~G~llg~~~~~~  241 (278)
T PTZ00101        197 VFNIIFFSLISFFYYFTFNGSNIDHVG-HLGGLLSGISMGILYNSQ  241 (278)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHHHHHHhh
Confidence            2211  11122221111 234566665 999999999887777764

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.84  E-value=3.5e-20  Score=166.28  Aligned_cols=189  Identities=21%  Similarity=0.244  Sum_probs=137.3

Q ss_pred             CCCCCCCcCCc--hHHHHHHHHHHHHHHHHHhhhhhh--------hcceeeecCccc---c--ccchhhhhhhccCCHHH
Q 021779            4 PAGGSLLFTGF--TKLCKGLAVVLVGGHILVQLLPAS--------VSVLALIPARTI---P--FAWNLLTAGYIEQTVHG   68 (307)
Q Consensus         4 ~~~~~~~~~~~--~~~t~~li~~~~~v~~l~~~~~~~--------~~~l~l~P~~~~---~--~~W~l~T~~F~h~~~~h   68 (307)
                      |...+++....  ++.+..++.+++++|+...+.+..        .....+.|....   .  ++||++|++|+|.|++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~H   83 (228)
T COG0705           4 PRRDRNPWRLIRAPPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLH   83 (228)
T ss_pred             CccccchHHhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHH
Confidence            33334444444  889999999999999998765321        122556664443   1  89999999999999999


Q ss_pred             HHHHHHHHHHHhHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHccC
Q 021779           69 VVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPD  148 (307)
Q Consensus        69 ll~n~l~L~~~G~~lE~~wGs~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~ql~P~  148 (307)
                      +++||+.++.+|+.+|+.+|+++|+.+|+++|+++++.+..+       .+..   ..+..|+||+++|++.++..+.|.
T Consensus        84 ll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~-------~~~~---~~~~~GASG~i~gllga~~~~~~~  153 (228)
T COG0705          84 LLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLF-------GPKG---GAPSLGASGAIFGLLGAYFLLFPF  153 (228)
T ss_pred             HHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHH-------cccc---cCcccchhHHHHHHHHHHHHHccc
Confidence            999999999999999999999999999999999999985432       2221   147899999999999999999999


Q ss_pred             CeEEEec--cccch--HHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHHHhhcC
Q 021779          149 QELYLLK--IKAKW--LPSLMLLLSIAISFFTAE-SAAYLPTLIFGTYMGWIYLRYLQKK  203 (307)
Q Consensus       149 ~~v~l~~--ir~k~--lp~~~l~~~~~~~~~~~~-~~~~~~~~l~G~~~gw~Ylrf~q~~  203 (307)
                      .......  +....  +..+.++.+++....... ++++.+ |++|++.|++|...+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~a-Hl~G~i~G~l~~~~~~~~  212 (228)
T COG0705         154 ARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSA-HLGGLIGGLLLAALLSRK  212 (228)
T ss_pred             cchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHHHHHHHHHHhhh
Confidence            7765422  22222  222233333333222211 455665 999999999998877764

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.82  E-value=2.8e-19  Score=164.21  Aligned_cols=170  Identities=18%  Similarity=0.202  Sum_probs=116.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhhhhh--hhcceeeecCc-cccccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhChH
Q 021779           14 FTKLCKGLAVVLVGGHILVQLLPA--SVSVLALIPAR-TIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSK   90 (307)
Q Consensus        14 ~~~~t~~li~~~~~v~~l~~~~~~--~~~~l~l~P~~-~~~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs~   90 (307)
                      ..|+|..++++++++|++..+...  ...++...... ..+|+||++|++|+|.++.|+++||+++|++|+.+|+.+|++
T Consensus        93 ~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~  172 (276)
T PRK10907         93 AGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSG  172 (276)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence            557899999999999999865422  33344332111 236999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH---HccCCeEEEeccccchHHHHHHH
Q 021779           91 EFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQ---IVPDQELYLLKIKAKWLPSLMLL  167 (307)
Q Consensus        91 efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~q---l~P~~~v~l~~ir~k~lp~~~l~  167 (307)
                      +++.+|+++++++|+.+..       +.+      ....|+||+++|+++....   ..|+..+.   ++...  +.+++
T Consensus       173 ~~l~l~l~s~i~~~~~~~~-------~~~------~~~gGaSGvVygL~g~~~~~~~~~p~~~~~---lp~~~--~~f~l  234 (276)
T PRK10907        173 KLIVITLISALLSGWVQSK-------FSG------PWFGGLSGVVYALMGYVWLRGERDPQSGIY---LPRGL--IAFAL  234 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------Hcc------chhhHHHHHHHHHHHHHHHHhccccccchh---hhHHH--HHHHH
Confidence            9999999999999998643       122      1357999999999875432   22332211   11111  12222


Q ss_pred             HHHHHHhh--cCCchhHHHHHHHHHHHHHHHHHHhhc
Q 021779          168 LSIAISFF--TAESAAYLPTLIFGTYMGWIYLRYLQK  202 (307)
Q Consensus       168 ~~~~~~~~--~~~~~~~~~~~l~G~~~gw~Ylrf~q~  202 (307)
                      +.++.++.  ...++++.+ |++|+++|.+..-...+
T Consensus       235 lwl~~g~~~~~g~~Ian~A-HlgGli~Gll~g~~~~~  270 (276)
T PRK10907        235 LWLVAGYFDLFGMSIANAA-HVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             HHHHHHHHHccCcccHHHH-HHHHHHHHHHHHHHhhh
Confidence            22222222  124566665 99999888886555444

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.70  E-value=2e-17  Score=137.45  Aligned_cols=140  Identities=23%  Similarity=0.413  Sum_probs=98.6

Q ss_pred             cccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 021779           51 PFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSG  130 (307)
Q Consensus        51 ~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G  130 (307)
                      +|+||++|+.|+|.|+.|+++|++.++.+|..+|+.+|++++...|+.+++.+++...+.       ....    .+..|
T Consensus         4 ~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~-------~~~~----~~~~G   72 (145)
T PF01694_consen    4 GQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLF-------SPPN----QPYVG   72 (145)
T ss_dssp             C-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-S---------S
T ss_pred             CcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccc-------cccc----cccCC
Confidence            589999999999999999999999999999999999999999999999999998875432       1111    15789


Q ss_pred             hHHHHHHHHHHHHHHccCCeEEE-eccccchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhcCC
Q 021779          131 FQGVLAGFLVGIKQIVPDQELYL-LKIKAKWLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKP  204 (307)
Q Consensus       131 ~sg~i~gllva~~ql~P~~~v~l-~~ir~k~lp~~~l~~~~~~~~~~~~~~~~~~~~l~G~~~gw~Ylrf~q~~~  204 (307)
                      +||+++|++.++....|+.+... .+.+....+...+.+.....  ...+.++.+ |++|+++|+.|...+.|+|
T Consensus        73 ~Sg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-hl~G~~~G~~~~~~~~~~~  144 (145)
T PF01694_consen   73 ASGAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLG--FIPNISFLG-HLGGFLAGLLYGFLILRRP  144 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTS--SSSTTTHHH-HHHHHHHHHHHHHHHCH--
T ss_pred             CcccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHH--HHHhHHHHH-HHHHHHHHHHHHHHHHHcc
Confidence            99999999999999888875332 11222222222222222211  134555665 9999999999988888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.63  E-value=8.5e-15  Score=131.01  Aligned_cols=182  Identities=17%  Similarity=0.257  Sum_probs=139.7

Q ss_pred             CCCcCCchHHHHHHHHHHHHHHHHHhhhhhhhcceeeecCccc-cccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhh
Q 021779            8 SLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTI-PFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPV   86 (307)
Q Consensus         8 ~~~~~~~~~~t~~li~~~~~v~~l~~~~~~~~~~l~l~P~~~~-~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~   86 (307)
                      ..+....|.+|..+..+...+|+++.. +.+.+.+.+-++... .|.||++||.++|.|..|+++||+.||..|...|+.
T Consensus         8 ~~~~~~~p~~ts~~~~~~~~i~lv~~~-~~i~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~   86 (258)
T KOG2632|consen    8 GQFWMKIPLLTSIVVVLAILIYLVSFF-PGIVEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERT   86 (258)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHhcc-chhhhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhh
Confidence            345567788899888888899988864 555555555555444 599999999999999999999999999999999999


Q ss_pred             hC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHccCCeEEE---eccccchHH
Q 021779           87 WG-SKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIKAKWLP  162 (307)
Q Consensus        87 wG-s~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~ql~P~~~v~l---~~ir~k~lp  162 (307)
                      .| +-+++.|..+.++.++++..+.+-   .....+.......+|.||.++++++.-.-..|+....+   ..++.+..|
T Consensus        87 ~G~t~~~l~~~~llalf~gIl~ll~~~---~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~P  163 (258)
T KOG2632|consen   87 HGTTVRILMFTVLLALFSGILYLLAYH---VFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAP  163 (258)
T ss_pred             ccceehHHHHHHHHHHHHHHHHHHHHH---HHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHHHH
Confidence            99 788888888888888887554331   12223233334689999999999999887788877432   678999999


Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 021779          163 SLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLR  198 (307)
Q Consensus       163 ~~~l~~~~~~~~~~~~~~~~~~~~l~G~~~gw~Ylr  198 (307)
                      ++++....+   . .++.+.+ +|++|+++|+.|..
T Consensus       164 w~lLi~~~~---l-vp~aSFl-ghl~GllvG~ay~~  194 (258)
T KOG2632|consen  164 WALLIATQI---L-VPQASFL-GHLCGLLVGYAYAF  194 (258)
T ss_pred             HHHHHHHHH---H-ccCchHH-HHHHHHHHHHHHHH
Confidence            988754322   2 2555566 49999999999876

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.38  E-value=9.8e-14  Score=128.78  Aligned_cols=81  Identities=21%  Similarity=0.182  Sum_probs=72.7

Q ss_pred             cccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 021779           51 PFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSG  130 (307)
Q Consensus        51 ~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G  130 (307)
                      .|.||++|++|+|.+++|+.+||+.+.++|-.+|...|..|+...|+++++.+++++.++       ..+     .+.+|
T Consensus       117 ~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~-------d~~-----~~sVG  184 (316)
T KOG2289|consen  117 GELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLF-------DPN-----SISVG  184 (316)
T ss_pred             chhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHh-------ccC-----Cceec
Confidence            589999999999999999999999999999999999999999999999999999987542       212     35799


Q ss_pred             hHHHHHHHHHHHH
Q 021779          131 FQGVLAGFLVGIK  143 (307)
Q Consensus       131 ~sg~i~gllva~~  143 (307)
                      +||+++|++.|.-
T Consensus       185 ASggvfaLlgA~L  197 (316)
T KOG2289|consen  185 ASGGVFALLGAHL  197 (316)
T ss_pred             ccHHHHHHHHHHH
Confidence            9999999998874

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=99.23  E-value=2.9e-10  Score=100.10  Aligned_cols=175  Identities=17%  Similarity=0.184  Sum_probs=122.1

Q ss_pred             chHHHHHHHHHHHHHHHHHhhhhhhhcceeeecCccc--cccchhhhhhhccC-CHHHHHHHHHHHHHHhHhHhhh-hCh
Q 021779           14 FTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTI--PFAWNLLTAGYIEQ-TVHGVVVSTLGLLFMGKLLEPV-WGS   89 (307)
Q Consensus        14 ~~~~t~~li~~~~~v~~l~~~~~~~~~~l~l~P~~~~--~~~W~l~T~~F~h~-~~~hll~n~l~L~~~G~~lE~~-wGs   89 (307)
                      +||+|+.+++..++..++..+----...+.++|....  .|+||++|+.|.-. .-++.++|+..++..++.+|+. ++.
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~   80 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG   80 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence            4899999999999888887642111224567777665  59999999999843 3478999999999999999998 333


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHccCCeEEE---eccccchHHHH
Q 021779           90 --KEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIKAKWLPSL  164 (307)
Q Consensus        90 --~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~ql~P~~~v~l---~~ir~k~lp~~  164 (307)
                        .+|+.+.+++++...+++.+    .+...-+     .+..| .+....+.-.+++..|+.++.+   +++|++++|++
T Consensus        81 ~~ady~~~ll~~~~~i~~~~~~----~~~~~~~-----~~~l~-~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~  150 (197)
T PF04511_consen   81 RSADYLWFLLFGASLILILSLL----IGPYFFN-----IPFLG-SSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWV  150 (197)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHh----hccchhH-----HHHHH-HHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHH
Confidence              57888887665554444321    1100001     11223 5577888888999999999875   79999999999


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhcCC
Q 021779          165 MLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKP  204 (307)
Q Consensus       165 ~l~~~~~~~~~~~~~~~~~~~~l~G~~~gw~Ylrf~q~~~  204 (307)
                      .++++.+.   + +. +.. .++.|+++|.+|.-+-..-|
T Consensus       151 ~~~~~~l~---~-~~-~~~-~~l~Gi~~Ghly~fl~~~~p  184 (197)
T PF04511_consen  151 LLAFSLLF---G-GS-SPI-PDLLGILVGHLYYFLKDIYP  184 (197)
T ss_pred             HHHHHHHh---C-CC-cHH-HHHHHHHHHHHHHHHHHhcc
Confidence            88776653   2 21 233 38999999999875433333

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=98.97  E-value=1.5e-08  Score=89.87  Aligned_cols=172  Identities=20%  Similarity=0.225  Sum_probs=126.4

Q ss_pred             CcCCchHHHHHHHHHHHHHHHHHhhhhhhh-cceeeecCccc--cccchhhhhhhccCC-HHHHHHHHHHHHHHhHhHhh
Q 021779           10 LFTGFTKLCKGLAVVLVGGHILVQLLPASV-SVLALIPARTI--PFAWNLLTAGYIEQT-VHGVVVSTLGLLFMGKLLEP   85 (307)
Q Consensus        10 ~~~~~~~~t~~li~~~~~v~~l~~~~~~~~-~~l~l~P~~~~--~~~W~l~T~~F~h~~-~~hll~n~l~L~~~G~~lE~   85 (307)
                      .+.++|++|.....+.++.-++.++ +-+- .++-++|..++  .|+||++|+.+.-.. =+|.++||++++--++.||+
T Consensus         8 ~~~~iPpVTR~~~~~~v~tt~~~~l-~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~   86 (239)
T KOG0858|consen    8 FYLQIPPVTRYYTTACVVTTLLVRL-DLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEE   86 (239)
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHhh-cccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhc
Confidence            5778999999999888888887764 2222 25677787766  599999999988765 68999999999999999998


Q ss_pred             hhCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHccCCeEEE---eccccc
Q 021779           86 VWGS---KEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIKAK  159 (307)
Q Consensus        86 ~wGs---~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~ql~P~~~v~l---~~ir~k  159 (307)
                      --=.   ..|+..+++++++-.+.....    +.          ...| .+.++.++-.+++..|+.++.+   ++++++
T Consensus        87 g~f~~rtadf~~mllf~~~l~~~~~~~~----~~----------~fLg-~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~  151 (239)
T KOG0858|consen   87 GSFRGRTADFLYMLLFGAVLLTLTGLFV----YI----------VFLG-QSLVFMLVYVWSKRNPDVIVSFFGLITFKAP  151 (239)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHH----HH----------HHHH-HHHHHHHHHHHHhhCCCceEEEEEEecCccc
Confidence            6432   567777777766555433211    11          1122 4567788888999999999986   899999


Q ss_pred             hHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhcCC
Q 021779          160 WLPSLMLLLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKKP  204 (307)
Q Consensus       160 ~lp~~~l~~~~~~~~~~~~~~~~~~~~l~G~~~gw~Ylrf~q~~~  204 (307)
                      ++|++.++++.+.    ..+ . +. .+.|+++|-+|.-+=..+|
T Consensus       152 YlPwvll~fs~l~----g~~-~-~~-dllGi~~GHiy~fl~~~~p  189 (239)
T KOG0858|consen  152 YLPWVLLGFSFLF----GGS-I-LV-DLLGIIVGHIYYFLDDVYP  189 (239)
T ss_pred             cchHHHHHHHHHh----CCc-h-HH-HHHhhhhheeEEEEeeecc
Confidence            9999998877643    223 2 33 6899999988765544443

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=98.79  E-value=3.6e-09  Score=100.95  Aligned_cols=129  Identities=16%  Similarity=0.196  Sum_probs=88.6

Q ss_pred             cccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 021779           51 PFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSG  130 (307)
Q Consensus        51 ~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G  130 (307)
                      .|.+||+|+.|+|.++.|+++++.+-..+-+.+|+.-|++++...|+.+|+.+|+++.++            ..|.+-+|
T Consensus       449 dQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIF------------lpY~~eVg  516 (652)
T KOG2290|consen  449 DQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIF------------LPYRAEVG  516 (652)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheee------------eccccccC
Confidence            389999999999999999999999999999999999999999999999999999986431            01346789


Q ss_pred             hHHHHHHHHHHHHH-HccCCeEEEeccccchHHHHHHHHHH-HHHhhcCCchhHHHHHHHHHHHHHHH
Q 021779          131 FQGVLAGFLVGIKQ-IVPDQELYLLKIKAKWLPSLMLLLSI-AISFFTAESAAYLPTLIFGTYMGWIY  196 (307)
Q Consensus       131 ~sg~i~gllva~~q-l~P~~~v~l~~ir~k~lp~~~l~~~~-~~~~~~~~~~~~~~~~l~G~~~gw~Y  196 (307)
                      .+|..+|++.+.-. +.-..++    +.-||-.+.-++..+ ++.+-..+.+..++ |++|++.|.+.
T Consensus       517 Pa~sQ~Gila~l~vEl~qs~~i----l~~~w~a~~~Lia~~L~L~iGliPWiDN~a-HlfG~i~GLl~  579 (652)
T KOG2290|consen  517 PAGSQFGILACLFVELFQSWQI----LERPWRAFFHLIATLLVLCIGLIPWIDNWA-HLFGTIFGLLT  579 (652)
T ss_pred             CcccccchHHHHHHHHHhhhHh----hhhHHHHHHHHHHHHHHHHhccccchhhHH-HHHHHHHHHHH
Confidence            99999998766532 2222222    112443333222221 12111124445555 77777766653

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=98.65  E-value=3.1e-08  Score=90.65  Aligned_cols=142  Identities=14%  Similarity=0.132  Sum_probs=105.2

Q ss_pred             CCcCCchHHHHHHHHHHHHHHHHHhhhhh---hhcceeeecCccccccchhhhhhhccCCHHHHHHHHHHHHHHhH-hHh
Q 021779            9 LLFTGFTKLCKGLAVVLVGGHILVQLLPA---SVSVLALIPARTIPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGK-LLE   84 (307)
Q Consensus         9 ~~~~~~~~~t~~li~~~~~v~~l~~~~~~---~~~~l~l~P~~~~~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~-~lE   84 (307)
                      .+.+..+.++.+|+++|+.+|.++++...   ..+|+...+.+..+ .|.++++.|.|.+.+|+-.||+.++.++. .+-
T Consensus       109 ~w~~~~~g~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~~~~t~-~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~  187 (310)
T KOG2980|consen  109 HWISGANGVVFGLLIANAFVFTLWRVPQKQFTMIPWMLSRNAYKTG-CWKIILSTFSHYSALHLGPNMLVLKSYLAGALK  187 (310)
T ss_pred             HHhhcCCcchhHHHHHHHHHHHHHHhcchhhhhhhHHhhccccccc-ceeEEeehhcchhHhhhcHHHHHHHHHhccccc
Confidence            34555566899999999999999986422   45666666654443 57799999999999999999999888876 888


Q ss_pred             hhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHccCCeEEE---eccccc
Q 021779           85 PVWGSKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL---LKIKAK  159 (307)
Q Consensus        85 ~~wGs~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~ql~P~~~v~l---~~ir~k  159 (307)
                      ...|...+..+|+..+..+..+...        ..-..-...+..|+||++++++..++.++|+++..+   .+++.-
T Consensus       188 ~~~~~~~~~AlylSa~~~~~~i~~~--------~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~g  257 (310)
T KOG2980|consen  188 GSLGFSSFFALYLSAGVKGLFISVK--------DKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAG  257 (310)
T ss_pred             CCcchhhcccceeccccccceeEee--------ccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeeccccc
Confidence            8888888888887555554443221        000111235778999999999999999999999876   555553

>COG5291 Predicted membrane protein [Function unknown]

Probab=97.95  E-value=9.7e-05  Score=65.96  Aligned_cols=145  Identities=14%  Similarity=0.208  Sum_probs=91.8

Q ss_pred             CCCcCCchHHHHHHHHHHHHHHHHHhhhhhhhcceeee-cCccc--cccchhhhhhhccC-CHHHHHHHHHHHHHHhHhH
Q 021779            8 SLLFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALI-PARTI--PFAWNLLTAGYIEQ-TVHGVVVSTLGLLFMGKLL   83 (307)
Q Consensus         8 ~~~~~~~~~~t~~li~~~~~v~~l~~~~~~~~~~l~l~-P~~~~--~~~W~l~T~~F~h~-~~~hll~n~l~L~~~G~~l   83 (307)
                      +++...+||+|..+..+...+-++... +.+.|+..+. ....+  .|+||++|+..+-. .-+..++++..+|--.++|
T Consensus        13 lg~~~~IPPITRy~~ll~~a~til~~~-~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~L   91 (313)
T COG5291          13 LGQMLRIPPITRYMTLLISAVTILVYV-DLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRML   91 (313)
T ss_pred             hcccccCCcHHHHHHHHHHHHHHHHHH-hhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence            345556899988887777777666553 3444544332 22222  48999999765554 4578999999999999999


Q ss_pred             hhh-hCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHH----HHHHHHccCCeEEE---
Q 021779           84 EPV-WGS--KEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFL----VGIKQIVPDQELYL---  153 (307)
Q Consensus        84 E~~-wGs--~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gll----va~~ql~P~~~v~l---  153 (307)
                      |+- .|.  +|+..+.+++.++--.++   .     +          +.|.|..-.|+.    --+..-.|+.++.+   
T Consensus        92 E~g~f~~~lv~Y~~yl~~~~l~i~a~s---~-----I----------~gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~  153 (313)
T COG5291          92 EEGCFNTSLVEYFWYLLVISLVIFAIS---N-----I----------YGGISALGTSFSATITYIWSKRNPRAIIQFFGF  153 (313)
T ss_pred             hccccCccHHHHHHHHHHHHHHHHHHH---H-----H----------hcchhhhcchhhhheeeeeeecCCceEEEEEEe
Confidence            995 343  477666654433211111   0     0          112333333333    33445577777765   


Q ss_pred             eccccchHHHHHHHHHHH
Q 021779          154 LKIKAKWLPSLMLLLSIA  171 (307)
Q Consensus       154 ~~ir~k~lp~~~l~~~~~  171 (307)
                      ++++.||+|++.+.++++
T Consensus       154 i~v~gkYlP~Illgfsfl  171 (313)
T COG5291         154 ISVPGKYLPFILLGFSFL  171 (313)
T ss_pred             eecchhhhhHHHHHHHHH
Confidence            899999999999887654

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=4.1e-05  Score=68.95  Aligned_cols=129  Identities=15%  Similarity=0.153  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhcceeeecCccc---cccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhChHH
Q 021779           15 TKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTI---PFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGSKE   91 (307)
Q Consensus        15 ~~~t~~li~~~~~v~~l~~~~~~~~~~l~l~P~~~~---~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs~e   91 (307)
                      -++||...+-...+-+.... -..-+.+.+.-+..+   .|+||++-+.|+-.|-.++++-.+ +++.-|.+||..|+-+
T Consensus        11 mpVTK~~~iT~~~~~vvagI-~~~k~~f~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~-I~Y~fR~~ERlLGShk   88 (323)
T KOG4463|consen   11 MPVTKAFVITSALFTVVAGI-QGRKSKFGLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLY-ILYYFRVFERLLGSHK   88 (323)
T ss_pred             cchHHHHHHHHHHHHHHHHh-hhcccccccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH-HHHHHHHHHHHhcccc
Confidence            36677655444443333221 122344444433222   589999999999998888877655 4555599999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHccCCe
Q 021779           92 FLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQE  150 (307)
Q Consensus        92 fl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~ql~P~~~  150 (307)
                      |..|++.++..+-+..+++..+.-..+++-.+     .+-.|.+++.+.-+-..+|-..
T Consensus        89 y~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~-----~qp~~liFa~~~~~y~~ip~~~  142 (323)
T KOG4463|consen   89 YSVFIVFSGTVSLLLEVILLSLLKDTTANLLT-----SQPYGLIFASFIPFYLDIPVST  142 (323)
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHHHHhhhhh-----cCCCceeeeeccceEEEeccee
Confidence            99999999999999988877665555555222     3445577776655555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.91
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.89
1g70_B	26	RSG-1.2 peptide; peptide-RNA complex, non-canonica	92.76

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.91  E-value=4.3e-23  Score=177.88  Aligned_cols=172  Identities=17%  Similarity=0.153  Sum_probs=131.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhhhh--hhcceeeecCcc-ccccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhCh
Q 021779           13 GFTKLCKGLAVVLVGGHILVQLLPA--SVSVLALIPART-IPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGS   89 (307)
Q Consensus        13 ~~~~~t~~li~~~~~v~~l~~~~~~--~~~~l~l~P~~~-~~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs   89 (307)
                      +.+|+|+.++++|+++|++....+.  ...++++.|... .+|+||++|++|+|.++.|+++||+.++.+|+.+|+.+|+
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~   81 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            4578999999999999999876543  456788888643 3799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH---HHccCCeEEEeccccchHHHHHH
Q 021779           90 KEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIK---QIVPDQELYLLKIKAKWLPSLML  166 (307)
Q Consensus        90 ~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~---ql~P~~~v~l~~ir~k~lp~~~l  166 (307)
                      ++|+.+|+++++.+++.+.+.       .++      +..|+||+++|++++..   ...|+.++.   ++.+....  +
T Consensus        82 ~~fl~~yl~~~i~~~l~~~~~-------~~~------~~vGaSGai~gl~g~~~~~~~~~p~~~~~---l~~~~~~~--~  143 (181)
T 2xov_A           82 GKLIVITLISALLSGYVQQKF-------SGP------WFGGLSGVVYALMGYVWLRGERDPQSGIY---LQRGLIIF--A  143 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HCS------CCCCSHHHHHHHHHHHHHHHHHCGGGSCC---CCHHHHHH--H
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------cCC------CceeHHHHHHHHHHHHHHHHhhCcCceee---eHHHHHHH--H
Confidence            999999999999999976431       111      26899999999998753   467776542   22222211  1


Q ss_pred             HHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHHhhcC
Q 021779          167 LLSIAISFFT--AESAAYLPTLIFGTYMGWIYLRYLQKK  203 (307)
Q Consensus       167 ~~~~~~~~~~--~~~~~~~~~~l~G~~~gw~Ylrf~q~~  203 (307)
                      .+.++.++..  .+++++.+ |++|+++|+++...++|+
T Consensus       144 ~~~~~~~~~~~~~~~v~~~a-HlgG~l~G~l~~~~~~~~  181 (181)
T 2xov_A          144 LIWIVAGWFDLFGMSMANGA-HIAGLAVGLAMAFVDSLN  181 (181)
T ss_dssp             HHHHHHHHTTSSCCSSCHHH-HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccccchHHH-HHHHHHHHHHHHHHHhcC
Confidence            2222333332  24667776 999999999998887763

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.89  E-value=8.9e-23  Score=178.09  Aligned_cols=174  Identities=14%  Similarity=0.079  Sum_probs=128.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhhhh--hhcceeeecCcc-ccccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhCh
Q 021779           13 GFTKLCKGLAVVLVGGHILVQLLPA--SVSVLALIPART-IPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGS   89 (307)
Q Consensus        13 ~~~~~t~~li~~~~~v~~l~~~~~~--~~~~l~l~P~~~-~~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs   89 (307)
                      +.+++|+.++++|+++|++....+.  ..+++++.|... .+|+||++|++|+|.++.|+++||+.++.+|+.+|+.||+
T Consensus         7 ~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~   86 (196)
T 2nr9_A            7 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS   86 (196)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence            5578999999999999999876542  456788888754 3799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH---HccCCeEEEeccccchHHHHHH
Q 021779           90 KEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQ---IVPDQELYLLKIKAKWLPSLML  166 (307)
Q Consensus        90 ~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~q---l~P~~~v~l~~ir~k~lp~~~l  166 (307)
                      ++|+.+|+++++.+++.+.+.       .++      ...|+||+++|++++...   ..|+. .. ++.+...+..+.+
T Consensus        87 ~~~l~~yl~~~~~~~l~~~~~-------~~~------~~vGaSGai~gl~g~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  151 (196)
T 2nr9_A           87 VKLLMLYVVASAITGYVQNYV-------SGP------AFFGLSGVVYAVLGYVFIRDKLNHHL-FD-LPEGFFTMLLVGI  151 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HCS------CCCCSHHHHHHHHHHHHHHHHSSTTS-CC-CCCSSTTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------cCC------CeeeHHHHHHHHHHHHHHHHHhcchh-hc-chHHHHHHHHHHH
Confidence            999999999999999976431       221      268999999999986533   33443 11 2222222222222


Q ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhcC
Q 021779          167 LLSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKK  203 (307)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~G~~~gw~Ylrf~q~~  203 (307)
                      .+.+. .....+++++.+ |++|+++|+++...+.++
T Consensus       152 ~~~~~-~~~~~~~v~~~a-HlgG~l~G~l~~~~~~~~  186 (196)
T 2nr9_A          152 ALGFI-SPLFGVEMGNAA-HISGLIVGLIWGFIDSKL  186 (196)
T ss_dssp             THHHH-SCSSCCTTCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HhccCCCccHHH-HHHHHHHHHHHHHHHHhc
Confidence            22221 111123667776 999999999988777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.87
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.86

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1e-21  Score=166.64  Aligned_cols=172  Identities=15%  Similarity=0.084  Sum_probs=122.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhhhh--hhcceeeecCcc-ccccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhCh
Q 021779           13 GFTKLCKGLAVVLVGGHILVQLLPA--SVSVLALIPART-IPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWGS   89 (307)
Q Consensus        13 ~~~~~t~~li~~~~~v~~l~~~~~~--~~~~l~l~P~~~-~~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wGs   89 (307)
                      +..|+|..++++++++|++....+.  ...++...+... .+|+||++|++|+|.|+.|+++||+.++.+|+.+|+.+|+
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~   81 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5679999999999999998766532  334555543333 3699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHccCCeEEEeccccchHHHHHHHHH
Q 021779           90 KEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYLLKIKAKWLPSLMLLLS  169 (307)
Q Consensus        90 ~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~ql~P~~~v~l~~ir~k~lp~~~l~~~  169 (307)
                      ++++.+|+++++++++...+.       . +     ....|+||+++|+++......++........+........+  .
T Consensus        82 ~~~~~~~~~~~~~g~l~~~~~-------~-~-----~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  146 (180)
T d3b45a1          82 GKLIVITLISALLSGYVQQKF-------S-G-----PWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALI--W  146 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------H-C-----SCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHH--H
T ss_pred             hhheeeeeHHHHHHHHHHHHH-------h-c-----cccccccchHHHHHHHHHHHhhhcchhHHhhHHHHHHHHHH--H
Confidence            999999999999999975431       1 1     24579999999998777655444332111111111111111  1


Q ss_pred             HHHHhh--cCCchhHHHHHHHHHHHHHHHHHHh
Q 021779          170 IAISFF--TAESAAYLPTLIFGTYMGWIYLRYL  200 (307)
Q Consensus       170 ~~~~~~--~~~~~~~~~~~l~G~~~gw~Ylrf~  200 (307)
                      ....+.  ...++++.+ |++|+++|+++....
T Consensus       147 ~~~~~~~~~~~~v~~~a-HlgG~l~G~~~~~~~  178 (180)
T d3b45a1         147 IVAGWFDLFGMSMANGA-HIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HHHHHTTSSCCSSCHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCchHHHH-HHHHHHHHHHHHHHH
Confidence            111122  234566766 999999999987653

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.86  E-value=3.7e-22  Score=170.92  Aligned_cols=177  Identities=15%  Similarity=0.102  Sum_probs=123.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhh-hhhhcceeeecCcc--ccccchhhhhhhccCCHHHHHHHHHHHHHHhHhHhhhhC
Q 021779           12 TGFTKLCKGLAVVLVGGHILVQLL-PASVSVLALIPART--IPFAWNLLTAGYIEQTVHGVVVSTLGLLFMGKLLEPVWG   88 (307)
Q Consensus        12 ~~~~~~t~~li~~~~~v~~l~~~~-~~~~~~l~l~P~~~--~~~~W~l~T~~F~h~~~~hll~n~l~L~~~G~~lE~~wG   88 (307)
                      .+..|+|..++++++++|++.... +.....+...|...  .+|+||++|+.|+|.|+.|+++||+.++.+|+.+|+.+|
T Consensus         3 ~~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G   82 (189)
T d2nr9a1           3 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFG   82 (189)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999988753 22222333333332  369999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHccCCeEEE-eccccchHHHHHHH
Q 021779           89 SKEFLKFIFIVNFLTSLCIFITAVALYYITRLETYLYMPLSGFQGVLAGFLVGIKQIVPDQELYL-LKIKAKWLPSLMLL  167 (307)
Q Consensus        89 s~efl~f~l~~~v~~~l~~~~~~~~~y~i~~~~~~l~~~~~G~sg~i~gllva~~ql~P~~~v~l-~~ir~k~lp~~~l~  167 (307)
                      +++++.+|++++++++++...       ..+      .+..|+||+++|++.++....+.++... .+.+......+.+.
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~-------~~~------~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (189)
T d2nr9a1          83 SVKLLMLYVVASAITGYVQNY-------VSG------PAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIA  149 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHC------SCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTT
T ss_pred             HHhhhhHHHHHHHHHHHHHHh-------cCC------CCcccchHHHHHHHHHHHHHHHHhhhHhccHHHHHHHHHHHHH
Confidence            999999999999999987432       111      2568999999999877766555554332 22222222111222


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHhhcC
Q 021779          168 LSIAISFFTAESAAYLPTLIFGTYMGWIYLRYLQKK  203 (307)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~l~G~~~gw~Ylrf~q~~  203 (307)
                      +..+.. ....++++.+ |++|+++|.+|...++|+
T Consensus       150 ~~~~~~-~~~~~v~~~a-Hl~G~l~G~~~g~~~~~~  183 (189)
T d2nr9a1         150 LGFISP-LFGVEMGNAA-HISGLIVGLIWGFIDSKL  183 (189)
T ss_dssp             HHHHSC-SSCCTTCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh-ccCCChHHHH-HHHHHHHHHHHHHHHHcc
Confidence            221111 1234566765 999999998886666553