Citrus Sinensis ID: 021782

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYIWSPYSTSKIGCQLWLNMNLHLLCNAIASLC
cccccccccccccccEEEEEcccccccHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEcccHHHHHHHHHccccccccccEEEEccccccccccccccHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccEEEEccccccccccEEEEEccccccccccccccccHHHHHHccEEEcccccccccHHHHHHcccccccccHHHHHccEEEcccccccHHHHHHHHHHHHHHHHHHHccc
cccccccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccEEEEEccccEEEEEEcccccHHHHHHHHHHcccccccEEEEEEEEccccHHHHHHcHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHcccEEEEEcccccccccEEEEccccccccEccccccccccccccccccccccccEEEEEccccccccccccccHHHHHccEEEEEccccccEEcccHHHHHHHHHHHHHccc
merrgiaivnsdhkptimvtnddgidapgLRSLVRVLVSTNRytvqvcapdseksavshsitwrhpisarpadfdgvtayavsgtpadcaslgvsqalfpsvpdlvisginmgsncgyHVVYSGTVAGAREaffhgvpsvsisydwvggksnvndytLAAEACLPIINAILAEIrnqtypercflnidlptdipnnkgykltkqgTSIFKMGWRRVtsemqggkmlstmtmdtdsavtietdtstpleedLLFRREvrgahiadpdtdwqflregyiwspystskigCQLWLNMNLHLLCNAIASLC
merrgiaivnsdhkptimvtnddgidapgLRSLVRVLVSTNRYTVqvcapdseksavsHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIdlptdipnnkgykltkqgtsifkmgwRRVTSEMQGGKMLSTMTMDTDSAVtietdtstpleedLLFRREVRGahiadpdtdwqFLREGYIWSPYSTSKIGCQLWLNMNLHLLCNAIASLC
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYIWSPYSTSKIGCQLWLNMNLHLLCNAIASLC
***************TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVT*******************************EDLLFRREVRGAHIADPDTDWQFLREGYIWSPYSTSKIGCQLWLNMNLHLLCNAIA***
****************IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYIWSPYSTSKIGCQLWLNMNLHLLCNAIASLC
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA***********ITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYIWSPYSTSKIGCQLWLNMNLHLLCNAIASLC
*****IA****DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTS******************VTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYIWSPYSTSKIGCQLWLNMNLHLLCNAIASLC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVRGAHIADPDTDWQFLREGYIWSPYSTSKIGCQLWLNMNLHLLCNAIASLC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query307 2.2.26 [Sep-21-2011]
Q3ADI0264 5'-nucleotidase SurE OS=C yes no 0.801 0.931 0.363 2e-31
Q30YV9259 5'-nucleotidase SurE OS=D yes no 0.596 0.706 0.413 8e-31
A6LL96255 5'-nucleotidase SurE OS=T yes no 0.592 0.713 0.416 7e-30
B7IH68255 5'-nucleotidase SurE OS=T yes no 0.586 0.705 0.426 8e-30
O67004251 5'-nucleotidase SurE OS=A yes no 0.599 0.733 0.395 1e-29
Q30QB8264 5'-nucleotidase SurE OS=S yes no 0.543 0.632 0.434 1e-29
B8FC91253 5'-nucleotidase SurE OS=D yes no 0.583 0.707 0.402 2e-29
Q2RJD1260 5'-nucleotidase SurE OS=M yes no 0.592 0.7 0.398 4e-29
A6H213257 5'-nucleotidase SurE OS=F yes no 0.605 0.723 0.388 6e-29
Q5HWH7258 5'-nucleotidase SurE OS=C yes no 0.599 0.713 0.377 8e-29
>sp|Q3ADI0|SURE_CARHZ 5'-nucleotidase SurE OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=surE PE=3 SV=1 Back     alignment and function desciption
 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/267 (36%), Positives = 140/267 (52%), Gaps = 21/267 (7%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
           I++TNDDGI APG+++L +VL    +Y + V APD EKSA  H IT   P+ A    F  
Sbjct: 3   ILLTNDDGIYAPGIKALRQVLEKEGKYELTVVAPDREKSATGHGITVHRPLRAFDITFKN 62

Query: 77  --VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFF 134
             V   +V GTPADC  L V +AL    PDLV+SGIN G N G  V+YSGTV+ A EA  
Sbjct: 63  SKVRGVSVDGTPADCVKLAV-EALLDKPPDLVLSGINSGPNLGTDVLYSGTVSAAIEAMI 121

Query: 135 HGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIP 194
           +G+P+++IS      +    +Y  AAE    I   +L  I    +P    LNI++P ++P
Sbjct: 122 NGIPAIAISMGSFAFED--EEYLRAAE----IFARLLPRILEHPWPRDTILNINIP-NVP 174

Query: 195 NNKGYKLTKQGTSIFKMGWRR---VTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDL 251
             +      +G +I ++G R+   V  E +  + LS   M +  AV  E    T  +   
Sbjct: 175 LEE-----IKGIAITRLGVRKYINVFEERKDPRGLSYYWM-SGEAVNYENGQDT--DTAA 226

Query: 252 LFRREVRGAHIADPDTDWQFLREGYIW 278
           L R+E+    +    T++ +L E   W
Sbjct: 227 LARKEISITPVHFDLTNYHYLNELKTW 253
Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 5
>sp|Q30YV9|SURE_DESDG 5'-nucleotidase SurE OS=Desulfovibrio desulfuricans (strain G20) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A6LL96|SURE_THEM4 5'-nucleotidase SurE OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|B7IH68|SURE_THEAB 5'-nucleotidase SurE OS=Thermosipho africanus (strain TCF52B) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|O67004|SURE_AQUAE 5'-nucleotidase SurE OS=Aquifex aeolicus (strain VF5) GN=surE PE=1 SV=1 Back     alignment and function description
>sp|Q30QB8|SURE_SULDN 5'-nucleotidase SurE OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|B8FC91|SURE_DESAA 5'-nucleotidase SurE OS=Desulfatibacillum alkenivorans (strain AK-01) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q2RJD1|SURE_MOOTA 5'-nucleotidase SurE OS=Moorella thermoacetica (strain ATCC 39073) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A6H213|SURE_FLAPJ 5'-nucleotidase SurE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q5HWH7|SURE_CAMJR 5'-nucleotidase SurE OS=Campylobacter jejuni (strain RM1221) GN=surE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
255552207306 5'-nucleotidase surE, putative [Ricinus 0.872 0.875 0.757 1e-118
225432652308 PREDICTED: 5'-nucleotidase surE [Vitis v 0.931 0.928 0.675 1e-111
449504179307 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.869 0.869 0.706 1e-111
449432702307 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.869 0.869 0.706 1e-109
224108041247 predicted protein [Populus trichocarpa] 0.801 0.995 0.707 1e-104
357444243306 5'-nucleotidase surE [Medicago truncatul 0.912 0.915 0.618 1e-103
356497458303 PREDICTED: 5'-nucleotidase surE-like [Gl 0.850 0.861 0.664 1e-100
297804776316 hypothetical protein ARALYDRAFT_493398 [ 0.938 0.911 0.636 1e-100
356541721303 PREDICTED: 5'-nucleotidase surE-like [Gl 0.899 0.910 0.615 1e-100
18414342315 5'-nucleotidase [Arabidopsis thaliana] g 0.905 0.882 0.641 5e-99
>gi|255552207|ref|XP_002517148.1| 5'-nucleotidase surE, putative [Ricinus communis] gi|223543783|gb|EEF45311.1| 5'-nucleotidase surE, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/268 (75%), Positives = 230/268 (85%)

Query: 10  NSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA 69
           +SD KPTIM+TNDDGIDAPGLRSLVRVLV+TNR+ + VCAPDSEKSAVSHSIT+RHPISA
Sbjct: 4   SSDQKPTIMITNDDGIDAPGLRSLVRVLVATNRFRILVCAPDSEKSAVSHSITYRHPISA 63

Query: 70  RPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGA 129
           R  D +G  AYA+SGTPADCASLGVS ALFPSVPDLVISGINMGSNCGYH+VYSGTVAGA
Sbjct: 64  RRVDIEGTLAYAISGTPADCASLGVSTALFPSVPDLVISGINMGSNCGYHIVYSGTVAGA 123

Query: 130 REAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDL 189
           REAFF GVPS+SISYDWVGGKS + D+ L AEAC PII+AIL EI+N+TY   CFLNIDL
Sbjct: 124 REAFFFGVPSISISYDWVGGKSTIQDFALGAEACEPIISAILVEIKNRTYQSGCFLNIDL 183

Query: 190 PTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEE 249
           PT++ N+KGYKLT+QG SIFKMGWR+V S M+G KMLSTMTMDT SAV  E D S   +E
Sbjct: 184 PTNVANHKGYKLTRQGRSIFKMGWRQVHSGMEGRKMLSTMTMDTKSAVETEVDESNESQE 243

Query: 250 DLLFRREVRGAHIADPDTDWQFLREGYI 277
            + FRREVRGA + D D+D +FL+EGYI
Sbjct: 244 QMWFRREVRGAQVDDEDSDHKFLQEGYI 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432652|ref|XP_002282293.1| PREDICTED: 5'-nucleotidase surE [Vitis vinifera] gi|297737043|emb|CBI26244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449504179|ref|XP_004162274.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432702|ref|XP_004134138.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224108041|ref|XP_002314700.1| predicted protein [Populus trichocarpa] gi|222863740|gb|EEF00871.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357444243|ref|XP_003592399.1| 5'-nucleotidase surE [Medicago truncatula] gi|355481447|gb|AES62650.1| 5'-nucleotidase surE [Medicago truncatula] Back     alignment and taxonomy information
>gi|356497458|ref|XP_003517577.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information
>gi|297804776|ref|XP_002870272.1| hypothetical protein ARALYDRAFT_493398 [Arabidopsis lyrata subsp. lyrata] gi|297316108|gb|EFH46531.1| hypothetical protein ARALYDRAFT_493398 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356541721|ref|XP_003539322.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information
>gi|18414342|ref|NP_567449.1| 5'-nucleotidase [Arabidopsis thaliana] gi|21593317|gb|AAM65266.1| unknown [Arabidopsis thaliana] gi|27311791|gb|AAO00861.1| expressed protein [Arabidopsis thaliana] gi|30984528|gb|AAP42727.1| At4g14930 [Arabidopsis thaliana] gi|332658124|gb|AEE83524.1| 5'-nucleotidase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
TAIR|locus:2129510315 AT4G14930 "AT4G14930" [Arabido 0.905 0.882 0.644 2.1e-93
TAIR|locus:2032652385 AT1G72880 "AT1G72880" [Arabido 0.690 0.550 0.483 2.3e-48
TIGR_CMR|CHY_0957264 CHY_0957 "acid phosphatase Sur 0.807 0.939 0.366 1.3e-31
TIGR_CMR|GSU_1523262 GSU_1523 "stationary-phase sur 0.570 0.667 0.392 3.1e-28
TIGR_CMR|CJE_0339258 CJE_0339 "acid phosphatase Sur 0.596 0.709 0.385 3.5e-27
UNIPROTKB|P0A840253 surE "broad specificity 5'(3') 0.560 0.679 0.391 5.1e-26
UNIPROTKB|Q9KI21258 surE "5'-nucleotidase SurE" [C 0.579 0.689 0.358 2e-24
TIGR_CMR|CBU_1671258 CBU_1671 "stationary-phase sur 0.579 0.689 0.358 2e-24
TIGR_CMR|SPO_2688260 SPO_2688 "acid phosphatase Sur 0.729 0.861 0.320 1.8e-23
TIGR_CMR|SO_3435248 SO_3435 "stationary-phase surv 0.566 0.701 0.382 2.9e-23
TAIR|locus:2129510 AT4G14930 "AT4G14930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 185/287 (64%), Positives = 225/287 (78%)

Query:    11 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISAR 70
             S  +P IMVTNDDGIDAPGLRSLVRVLVSTN Y V+VCAPDSEKSAVSHSI W  P++A+
Sbjct:    10 SGERPIIMVTNDDGIDAPGLRSLVRVLVSTNLYDVRVCAPDSEKSAVSHSIIWSRPLTAK 69

Query:    71 PADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAR 130
               + DG TAY+V GTPADC  LG+S+ALFPS PDLV+SGIN+GSNCGY++VYSGTVAGAR
Sbjct:    70 RVEIDGATAYSVDGTPADCTGLGLSEALFPSRPDLVLSGINVGSNCGYNIVYSGTVAGAR 129

Query:   131 EAFFHGVPSVSISYD--WVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNID 188
             EAF + VPS SISYD  W  G+ N ND+ L+A+ACLPIIN IL  I+N+T+P +CFLNID
Sbjct:   130 EAFLYDVPSASISYDFDWKRGEMNANDFALSAQACLPIINGILGAIKNKTHPMQCFLNID 189

Query:   189 LPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAV-TIETDTSTPL 247
             LPTDI N+KGYKLT+QG S+ KMGWR+V  E QG KMLSTMTMDT+S V + E DTS   
Sbjct:   190 LPTDIANHKGYKLTRQGKSMGKMGWRQVEEEAQGPKMLSTMTMDTESGVVSSENDTSAHA 249

Query:   248 EEDL-LFRREVRGAHIADPDTDWQFLREGYIW-SPY---STSKIGCQ 289
              +D  LF+RE+R A I++  +D  +L+EG+I  +P    S + + CQ
Sbjct:   250 GKDSRLFKRELR-ASISEEGSDSHYLKEGFITVTPLGALSQTDVDCQ 295
GO:0003993 "acid phosphatase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2032652 AT1G72880 "AT1G72880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0957 CHY_0957 "acid phosphatase SurE" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1523 GSU_1523 "stationary-phase survival protein SurE" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0339 CJE_0339 "acid phosphatase SurE" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|P0A840 surE "broad specificity 5'(3')-nucleotidase and polyphosphatase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KI21 surE "5'-nucleotidase SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1671 CBU_1671 "stationary-phase survival protein SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2688 SPO_2688 "acid phosphatase SurE" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3435 SO_3435 "stationary-phase survival protein SurE" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3ADI0SURE_CARHZ3, ., 1, ., 3, ., 50.36320.80130.9318yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.30.766
3rd Layer3.1.3.50.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
pfam01975188 pfam01975, SurE, Survival protein SurE 5e-70
PRK00346250 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatas 8e-63
COG0496252 COG0496, SurE, Predicted acid phosphatase [General 5e-57
TIGR00087244 TIGR00087, surE, 5'/3'-nucleotidase SurE 9e-47
PRK13935253 PRK13935, PRK13935, stationary phase survival prot 1e-44
PRK13933253 PRK13933, PRK13933, stationary phase survival prot 3e-42
PRK13931261 PRK13931, PRK13931, stationary phase survival prot 3e-31
PRK13932257 PRK13932, PRK13932, stationary phase survival prot 6e-31
PRK13934266 PRK13934, PRK13934, stationary phase survival prot 3e-23
>gnl|CDD|216821 pfam01975, SurE, Survival protein SurE Back     alignment and domain information 
 Score =  215 bits (549), Expect = 5e-70
 Identities = 77/195 (39%), Positives = 111/195 (56%), Gaps = 12/195 (6%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
           I++TNDDGI APG+R+L   L +     V V APD E+S V HSIT   P+  +  D   
Sbjct: 3   ILLTNDDGIHAPGIRALAEALKALGE--VTVVAPDREQSGVGHSITLHRPLRVKKVDP-- 58

Query: 77  VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHG 136
             AYAV+GTPADC  LG++  L    PDLV+SGIN G+N G  V+YSGTV  A EA   G
Sbjct: 59  -GAYAVNGTPADCVKLGLNGLLDDKKPDLVVSGINHGANLGTDVLYSGTVGAAMEAALLG 117

Query: 137 VPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN 196
           +PS+++S          +D+  AA+    ++  ++ ++     P    LN+++P   P+ 
Sbjct: 118 IPSIAVSLAG--NSEEKDDFETAAK----LVRRLVEKLLKNGLPPGTLLNVNIPDLPPSE 171

Query: 197 -KGYKLTKQGTSIFK 210
            KG K+T+ G   + 
Sbjct: 172 IKGIKVTRLGRRRYA 186

E. coli cells with the surE gene disrupted are found to survive poorly in stationary phase. It is suggested that SurE may be involved in stress response. Yeast also contains a member of the family, probable tubulin-tyrosine ligase PBY1. Yarrowia lipolytica PHO2 can complement a mutation in acid phosphatase, suggesting that members of this family could be phosphatases. Length = 188
>gnl|CDD|234732 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>gnl|CDD|223570 COG0496, SurE, Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>gnl|CDD|232819 TIGR00087, surE, 5'/3'-nucleotidase SurE Back     alignment and domain information
>gnl|CDD|237566 PRK13935, PRK13935, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184405 PRK13931, PRK13931, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|237565 PRK13934, PRK13934, stationary phase survival protein SurE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 307
PRK13932257 stationary phase survival protein SurE; Provisiona 100.0
PRK13935253 stationary phase survival protein SurE; Provisiona 100.0
PRK13933253 stationary phase survival protein SurE; Provisiona 100.0
COG0496252 SurE Predicted acid phosphatase [General function 100.0
PRK00346250 surE 5'(3')-nucleotidase/polyphosphatase; Provisio 100.0
PRK13931261 stationary phase survival protein SurE; Provisiona 100.0
PRK13934266 stationary phase survival protein SurE; Provisiona 100.0
TIGR00087244 surE 5'/3'-nucleotidase SurE. E. coli SurE is Reco 100.0
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 100.0
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 90.86
PLN02846 462 digalactosyldiacylglycerol synthase 90.3
cd03784 401 GT1_Gtf_like This family includes the Gtfs, a grou 89.07
PF14336291 DUF4392: Domain of unknown function (DUF4392) 85.86
cd03814364 GT1_like_2 This family is most closely related to 82.72
PLN02871 465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 82.16
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 80.36
PRK00726357 murG undecaprenyldiphospho-muramoylpentapeptide be 80.31
>PRK13932 stationary phase survival protein SurE; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-77  Score=556.37  Aligned_cols=248  Identities=28%  Similarity=0.434  Sum_probs=215.2

Q ss_pred             CCCCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCC-CCeeEEecCChHHH
Q 021782           11 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADC   89 (307)
Q Consensus        11 ~~~~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~-g~~~~~v~GTPaDc   89 (307)
                      ..++|||||||||||+||||++|+++|++.|  +|+||||++||||+||+||+++||++++++.+ +..+|+|+||||||
T Consensus         2 ~~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDC   79 (257)
T PRK13932          2 QDKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDC   79 (257)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHH
Confidence            3568999999999999999999999999987  89999999999999999999999999998744 45589999999999


Q ss_pred             HHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCCccHHHHHHHHHHHHH
Q 021782           90 ASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINA  169 (307)
Q Consensus        90 V~~al~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~  169 (307)
                      |++||++ +++.+|||||||||+|.|+|.||+||||||||+||+++||||||||+...    ...+|+.|++++.+++++
T Consensus        80 V~lal~~-~~~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~----~~~~~~~aa~~~~~l~~~  154 (257)
T PRK13932         80 IKVALSH-ILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTY----ENADFTYAGKFARKLARK  154 (257)
T ss_pred             HHHHHHh-hcCCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccC----CcCCHHHHHHHHHHHHHH
Confidence            9999987 56788999999999999999999999999999999999999999998531    123799999999988887


Q ss_pred             HHHHHHhcCCCCcceEeecCCCCC-CCCCCeEEEeccccccccceeEeeeccCCceeeecccccCcccccccccCCCCCC
Q 021782          170 ILAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLE  248 (307)
Q Consensus       170 l~~~~~~~~lp~~~~lNVN~P~~~-~~~~g~~~t~~g~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~~  248 (307)
                      ++    ...+|++++||||||.++ .+.+|+|+||||++.|.+.++++                          .||+++
T Consensus       155 l~----~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~~~~~~~~~~~--------------------------~dp~g~  204 (257)
T PRK13932        155 VL----REGLPPDTILSVNIPNVPESDIQGVLITRQGRSRWEEDAIER--------------------------HDMYGN  204 (257)
T ss_pred             HH----hcCCCCCcEEEEEeCCCCccccCCEEEeeCCCcccccceEEe--------------------------ECcCCC
Confidence            65    456899999999999987 46899999999999998877654                          245667


Q ss_pred             cccceeeeccCCCCCCCCCHHHHHHcCCCC-CCC--CCCchhhHHHHHHHH
Q 021782          249 EDLLFRREVRGAHIADPDTDWQFLREGYIW-SPY--STSKIGCQLWLNMNL  296 (307)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~tD~~al~~GyIS-TPl--~~~~~~~~~~l~~~l  296 (307)
                      .|||+.+.... ...+++||++++++|||| |||  ++|+++.+++|++|.
T Consensus       205 ~yywl~~~~~~-~~~~~~tD~~al~~GyISvTPL~~dlT~~~~l~~l~~~~  254 (257)
T PRK13932        205 PYYWLNGTLQL-LDDSLTQDEYAVRHNYVAVTPLSCDLTNHDFLSSLEQWK  254 (257)
T ss_pred             eEEEECCCccC-CCCCCCChHHHHHCCcEEEecCCcCCcChHHHHHHHhhh
Confidence            77888864332 123679999999999999 996  788888888888775

>PRK13935 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13933 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>COG0496 SurE Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>PRK13931 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13934 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>TIGR00087 surE 5'/3'-nucleotidase SurE Back     alignment and domain information
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PF14336 DUF4392: Domain of unknown function (DUF4392) Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
2wqk_A251 Crystal Structure Of Sure Protein From Aquifex Aeol 9e-31
3ty2_A261 Structure Of A 5'-Nucleotidase (Sure) From Coxiella 5e-22
2e69_A244 Crystal Structure Of The Stationary Phase Survival 7e-22
1j9j_A247 Crystal Structure Analysis Of Sure Protein From T.M 1e-21
2e6h_A244 Crystal Structure Of E37a Mutant Of The Stationary 4e-21
2v4o_A267 Crystal Structure Of Salmonella Typhimurium Sure At 4e-21
2v4n_A254 Crystal Structure Of Salmonella Typhimurium Sure At 4e-21
1ilv_A247 Crystal Structure Analysis Of The Tm107 Length = 24 1e-20
1l5x_A280 The 2.0-Angstrom Resolution Crystal Structure Of A 2e-16
>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus Length = 251 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (327), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 108/197 (54%), Gaps = 13/197 (6%)
Query: 15  PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF 74
           PT ++ NDDG  +PG+ +L   L S  R  V V APD   S V HS+T+  P+  R  D 
Sbjct: 2   PTFLLVNDDGYFSPGINALREALKSLGR--VVVVAPDRNLSGVGHSLTFTEPLKMRKIDT 59
Query: 75  DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFF 134
           D  T   + GTPADC  LG    L    PDLV+SGIN G N G  + YSGTV+GA E   
Sbjct: 60  DFYTV--IDGTPADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRI 117
Query: 135 HGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DI 193
            G+PS++ S     G+ N+  +   A+ C+ I+  +L    N+  PE  +LN+++P    
Sbjct: 118 LGIPSIAFS---AFGRENIM-FEEIAKVCVDIVKKVL----NEGIPEDTYLNVNIPNLRY 169
Query: 194 PNNKGYKLTKQGTSIFK 210
              KG K+T+QG   +K
Sbjct: 170 EEIKGIKVTRQGKRAYK 186
>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella Burnetii Length = 261 Back     alignment and structure
>pdb|2E69|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 In Complex With Sulfate Length = 244 Back     alignment and structure
>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima Length = 247 Back     alignment and structure
>pdb|2E6H|A Chain A, Crystal Structure Of E37a Mutant Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 Cocrystallized With Manganese And Amp Length = 244 Back     alignment and structure
>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75 Angstrom Resolution In Monoclinic Form Length = 267 Back     alignment and structure
>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7 Angstrom Resolution In Orthorhombic Form Length = 254 Back     alignment and structure
>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107 Length = 247 Back     alignment and structure
>pdb|1L5X|A Chain A, The 2.0-Angstrom Resolution Crystal Structure Of A Survival Protein E (Sure) Homolog From Pyrobaculum Aerophilum Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 1e-64
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 3e-64
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 7e-64
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 4e-63
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 7e-63
1l5x_A280 SurviVal protein E; structural genomics, putative 1e-61
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Length = 247 Back     alignment and structure
 Score =  202 bits (517), Expect = 1e-64
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 18/197 (9%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-D 75
           I+VTNDDGI + G+  L  +L  +  + V V APD E+SA  HSIT   P+  +     +
Sbjct: 3   ILVTNDDGIQSKGIIVLAELL--SEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISE 60

Query: 76  GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFH 135
            V AY+ +GTPADC  L  +  +     DL++SG+N G N G  +++SGTV+GA E    
Sbjct: 61  RVVAYSTTGTPADCVKLAYN-VVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMM 119

Query: 136 GVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPN 195
            +PS++IS        +  D+  AA   +  +                 LNI    ++P 
Sbjct: 120 NIPSIAISSA---NYESP-DFEGAARFLIDFLKEFDF----SLLDPFTMLNI----NVPA 167

Query: 196 N--KGYKLTKQGTSIFK 210
              KG++ T+Q    + 
Sbjct: 168 GEIKGWRFTRQSRRRWN 184
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} Length = 261 Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Length = 244 Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Length = 254 Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 100.0
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 100.0
2wqk_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 100.0
1l5x_A280 SurviVal protein E; structural genomics, putative 100.0
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 100.0
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 94.37
4amg_A400 Snogd; transferase, polyketide biosynthesis, GT1 f 93.98
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 93.55
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 92.63
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 92.51
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 92.25
3ia7_A 402 CALG4; glycosysltransferase, calicheamicin, enediy 91.7
3h4t_A 404 Glycosyltransferase GTFA, glycosyltransferase; van 90.83
3rsc_A 415 CALG2; TDP, enediyne, structural genomics, PSI-2, 90.39
2iya_A 424 OLEI, oleandomycin glycosyltransferase; carbohydra 89.99
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 86.21
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0 Back     alignment and structure
Probab=100.00  E-value=1.2e-79  Score=569.03  Aligned_cols=248  Identities=29%  Similarity=0.431  Sum_probs=214.8

Q ss_pred             cCCCCCCeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHH
Q 021782            9 VNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPAD   88 (307)
Q Consensus         9 ~~~~~~~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~g~~~~~v~GTPaD   88 (307)
                      |+..++|||||||||||+||||++|+++|++.  |+|+||||++||||+||++|+++||++++++ ++  .|+|+|||+|
T Consensus         6 ~~~~~~m~ILlTNDDGi~apGi~aL~~~l~~~--~~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~-~~--~~~v~GTPaD   80 (261)
T 3ty2_A            6 KTATPKLRLLLSNDDGVYAKGLAILAKTLADL--GEVDVVAPDRNRSGASNSLTLNAPLHIKNLE-NG--MISVEGTPTD   80 (261)
T ss_dssp             -----CCEEEEECSSCTTCHHHHHHHHHHTTT--SEEEEEEESSCCTTCTTCCCCSSCEEEEECT-TS--CEEESSCHHH
T ss_pred             hccCCCCeEEEEcCCCCCCHHHHHHHHHHHhc--CCEEEEecCCCCcCcccceecCCCeEEEEec-CC--eEEECCCHHH
Confidence            44567799999999999999999999999984  5999999999999999999999999999975 22  4999999999


Q ss_pred             HHHHhhhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCCccHHHHHHHHHHHH
Q 021782           89 CASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIIN  168 (307)
Q Consensus        89 cV~~al~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~  168 (307)
                      ||++||++ +++.+|||||||||+|.|+|.||+||||||||+||+++||||||||+...    ...+|+.|++++.++++
T Consensus        81 CV~lal~~-l~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~----~~~~~~~aa~~~~~lv~  155 (261)
T 3ty2_A           81 CVHLAITG-VLPEMPDMVVAGINAGPNLGDDVWYSGTVAAAMEGRFLGLPALAVSLGGE----LFRYYETAAKVVYQLIQ  155 (261)
T ss_dssp             HHHHHTTT-TSSSCCSEEEEEEEESCCCGGGGGTCHHHHHC-CCSTTSCCEEEEEECSS----SCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hcCCCCCEEEECCcCCCCCCCCcCCchHHHHHHHHHHcCCCeEEEEcCCC----CccCHHHHHHHHHHHHH
Confidence            99999997 56789999999999999999999999999999999999999999999642    24579999999999988


Q ss_pred             HHHHHHHhcCCCCcceEeecCCCCC-CCCCCeEEEeccccccccceeEeeeccCCceeeecccccCcccccccccCCCCC
Q 021782          169 AILAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPL  247 (307)
Q Consensus       169 ~l~~~~~~~~lp~~~~lNVN~P~~~-~~~~g~~~t~~g~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~  247 (307)
                      +++    +..||++++||||||.++ .+.+|+|+||||++.|.+.++++                          .||+|
T Consensus       156 ~l~----~~~lp~~~~lNVN~P~~~~~~~kGi~vtr~g~r~~~~~~~~~--------------------------~dprG  205 (261)
T 3ty2_A          156 RIE----KDPLPPSTILNINVPDLPYEELKGFEVTRLGTRHRAEPTIRQ--------------------------IDPRG  205 (261)
T ss_dssp             HHH----HSCCCTTCEEEEEECSSCGGGCCEEEECBCCCBCSCCCCEEE--------------------------ECTTS
T ss_pred             HHH----hcCCCCCeEEEecCCCCCcccCCceEEEECcccccccceEEE--------------------------ECCCC
Confidence            876    356899999999999987 47999999999999998877653                          24677


Q ss_pred             CcccceeeeccCCCCCCCCCHHHHHHcCCCC-CCC--CCCchhhHHHHHHHHH
Q 021782          248 EEDLLFRREVRGAHIADPDTDWQFLREGYIW-SPY--STSKIGCQLWLNMNLH  297 (307)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~tD~~al~~GyIS-TPl--~~~~~~~~~~l~~~l~  297 (307)
                      +.|||+.+.... ...+++||++||++|||| |||  ++|+++.++.|++|+.
T Consensus       206 ~~yyW~~g~~~~-~~~~~gTD~~av~~G~iSVTPl~~DlT~~~~l~~l~~~~~  257 (261)
T 3ty2_A          206 HPIYWVGAAGPE-QDSGPGTDFFAMNHHCVSITPLRVDLTHYEAFDQLASWVK  257 (261)
T ss_dssp             CEEEECCCCCCB-SSCSTTBHHHHHHTTEEEEEEBCSCCBCGGGHHHHHHHHH
T ss_pred             CeEEEEcCCccc-ccCCCCChHHHHHCCceEEEeEeecCccHHHHHHHHHHHh
Confidence            778888875333 235889999999999999 995  8999999999999985
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Back     alignment and structure
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus} Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 307
d1l5xa_276 c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) { 4e-45
d1j9ja_247 c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga mar 2e-41
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog PAE2908 (SurE-alpha)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  152 bits (385), Expect = 4e-45
 Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 12/243 (4%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
           I+VTNDDG+ +PGLR L +  +S     V V AP+S KSA    IT   P+     D  G
Sbjct: 3   ILVTNDDGVHSPGLRLLYQFALS--LGDVDVVAPESPKSATGLGITLHKPLRMYEVDLCG 60

Query: 77  VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVY-SGTVAGAREAFFH 135
             A A SGTP+D   L           D+V+SGIN+G N    V+  SGT+  A +A   
Sbjct: 61  FRAIATSGTPSDTVYLATFGLGRK--YDIVLSGINLGDNTSLQVILSSGTLGAAFQAALL 118

Query: 136 GVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPN 195
           G+P+++ S         +N+          + +     ++N        ++++ P  +  
Sbjct: 119 GIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLKNGMPQGVDVISVNFPRRLGR 178

Query: 196 NKGYKLTKQGTSIFKMGWRRVTSEMQ------GGKMLSTMTMDTDSAVTIETDTS-TPLE 248
               KL K     +                   G+ L+         V  E   + TPL 
Sbjct: 179 GVRAKLVKAAKLRYAQQVVERVDPRGVRYYWLYGRDLAPEPETDVYVVLKEGGIAITPLT 238

Query: 249 EDL 251
            +L
Sbjct: 239 LNL 241
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
d1j9ja_247 SurE homolog TM1662 {Thermotoga maritima [TaxId: 2 100.0
d1l5xa_276 SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyroba 100.0
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 90.0
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog TM1662
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.4e-76  Score=541.21  Aligned_cols=242  Identities=32%  Similarity=0.447  Sum_probs=211.0

Q ss_pred             CeEEEeCCCCCCCccHHHHHHHHHhcCCccEEEEecCCCCCcCcccccCCCCeeeeeccCC-CCeeEEecCChHHHHHHh
Q 021782           15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCASLG   93 (307)
Q Consensus        15 ~~ILlTNDDGi~a~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~siT~~~pl~v~~~~~~-g~~~~~v~GTPaDcV~~a   93 (307)
                      |||||||||||+||||++|+++|++ + |+|+||||++||||+|||||+++|++++++... +..+|+|+|||||||++|
T Consensus         1 M~ILltNDDGi~s~gl~~L~~~l~~-~-~~V~vvAP~~~~S~~g~ait~~~~l~~~~~~~~~~~~~~~v~GTPaDcv~~a   78 (247)
T d1j9ja_           1 MRILVTNDDGIQSKGIIVLAELLSE-E-HEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLA   78 (247)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTT-T-SEEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHH
T ss_pred             CeEEEEcCCCCCChHHHHHHHHHhc-C-CeEEEEecCCCCcCCcccccCCCCcceEEeecCCCceEEEeCCchHHHHHHh
Confidence            8999999999999999999999976 4 699999999999999999999999999998653 455899999999999999


Q ss_pred             hhccCCCCCCcEEEecCCCCCcccccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 021782           94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAE  173 (307)
Q Consensus        94 l~~~l~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~  173 (307)
                      |++ +++.+|||||||||+|.|+|.||+||||||||+||+++||||||||+.+.    ...+|+.+++++.++++++.  
T Consensus        79 l~~-l~~~~pDlVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~gipsiA~S~~~~----~~~~~~~a~~~~~~li~~l~--  151 (247)
T d1j9ja_          79 YNV-VMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY----ESPDFEGAARFLIDFLKEFD--  151 (247)
T ss_dssp             HHT-TSTTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS----SSCCHHHHHHHHHHHHHHCC--
T ss_pred             hhh-cccCcccEEEecccCCCccchhhhhHHHHHHHHHHHhcCCCcceehhhhh----cccchhHHHHHHHHHHHHHH--
Confidence            986 67889999999999999999999999999999999999999999999743    34579999999888877654  


Q ss_pred             HHhcCCCCcceEeecCCCCCCCCCCeEEEeccccccccceeEeeeccCCceeeecccccCcccccccccCCCCCCcccce
Q 021782          174 IRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLF  253 (307)
Q Consensus       174 ~~~~~lp~~~~lNVN~P~~~~~~~g~~~t~~g~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~d~d~~~~~~~~~  253 (307)
                        +..+|.+.+||||||.  .+.+|+++|++|++.|.+.+++.                          .+++++.|||+
T Consensus       152 --~~~~p~~~~lNVN~P~--~~~kG~k~t~~g~~~~~~~~~~~--------------------------~~~~g~~~y~~  201 (247)
T d1j9ja_         152 --FSLLDPFTMLNINVPA--GEIKGWRFTRQSRRRWNDYFEER--------------------------VSPFGEKYYWM  201 (247)
T ss_dssp             --GGGSCTTCEEEEEECS--SCCCEEEECBCCCCEEEEEEEEE--------------------------ECTTSCEEEEE
T ss_pred             --hcCCcccccccCCCCh--hhccCceeeeeccccccccceee--------------------------eCCCCCeeEEe
Confidence              4568889999999996  45899999999999887666543                          23566677888


Q ss_pred             eeeccCCCCCCCCCHHHHHHcCCCC-CCC--CCCchhhHHHHHHHH
Q 021782          254 RREVRGAHIADPDTDWQFLREGYIW-SPY--STSKIGCQLWLNMNL  296 (307)
Q Consensus       254 ~~~~~~~~~~~~~tD~~al~~GyIS-TPl--~~~~~~~~~~l~~~l  296 (307)
                      .+.... ...+++||++||++|||| |||  ++|+++.+++|++++
T Consensus       202 ~~~~~~-~~~~~~tD~~al~~GyISVTPL~~dlT~~~~l~~L~~~f  246 (247)
T d1j9ja_         202 MGEVIE-DDDRDDVDYKAVREGYVSITPIHPFLTNEQCLKKLREVY  246 (247)
T ss_dssp             EEEEEC-CCCCSSBHHHHHHTTEEEEEEECSCCCCHHHHHHHHHHC
T ss_pred             ccCccC-CCCCCChHHHHHHCCeEEEeecCcCCcCHHHHHHHHHhh
Confidence            876544 335789999999999999 995  789999999998875
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure