Citrus Sinensis ID: 021794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG
Secondary Structure (PSIPRED)
cccEEEEccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccEEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEccccccccccccccccccccccccccccccccEEccccccEEEccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHHccEEEEEEcccccccEEcccccccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccHHHccccccccccccccccccHHHHHHHccccccccccccccHHHccccccccccHHccccEEEEccccccEEEcccccccccccccccHHHcccccccccccHHHHcHHccHHHHHHHHHHcEccccccccccEccccccEEEcccccccEEccccccEEEEEcccccccEHccccccccccHHHHccccccEEEcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEccccccccEEEEEEEEEccccccccccEccc
Coil and Loop (DISEMBL)
MSINIVVAMAGLevhhsshqqfepmstsckadeifstpsyshladreflvteestnhngsteLLRKGFMEYGCQHYrrrcrirapccneifdcrhchneamnninvdqklrhdiprhevNQVQQVCVNCgvcmgeyfcescklfdddtskkqyhcdgcgicriggcdnffhcnkcrccysmllknshpcvegamhhdcpvccEYLFetrqdvivlpcghtIHKNCLKEMRehhqyacpicsksvcdMSKVWEKYDREiaatpmpeaylNKKVWILcndcgktsnVQFHVLAqkcpncksyntrltrg
Flexible Loop (DISEMBL)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTeestnhngstellrkgFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVlaqkcpncksyntrltrg
Low Complexity Region (SEG)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEvnqvqqvcvncgvcMGEYFCESCKLFDDDTSKKQYHcdgcgicriggcdNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG
Disordered region (IsUnstruct)
****IVVAMAGL*****************************HLADREFLV**********TELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY*******
Disordered Region (DISOPRED)
****IVV**************************************************************EYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT**
Disordered Region (DISEMBL)
MSINIVVAMAGLEVHH***********SCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKS********
Disordered Region (DISPRO)
*SINIVVAMAGLEVHHSS********************************************LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q96PM5	261	RING finger and CHY zinc	yes	no	0.765	0.900	0.454	4e-54
Q9CR50	261	RING finger and CHY zinc	yes	no	0.729	0.858	0.437	3e-53
O14099	425	Uncharacterized RING fing	yes	no	0.814	0.588	0.376	2e-44
Q8BGI1	148	RING finger protein 24 OS	no	no	0.241	0.5	0.328	0.0005
Q9Y225	148	RING finger protein 24 OS	no	no	0.241	0.5	0.328	0.0005

>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1

 Score =  212 bits (539), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/240 (45%), Positives = 142/240 (59%), Gaps = 5/240 (2%)

Query: 70  EYGCQHYRRRCRIRAPCCNEIFDCRHCH--NEAMNNINVDQKLRHDIPRHEVNQVQQVCV 127
           + GC+HY R C ++APCC++++ CR CH  NE         K    I   ++   QQ C 
Sbjct: 17  QRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCE 76

Query: 128 NCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSH 187
            C    GEY+C+ C LFD D  KKQYHC+ CGICRIG  ++FFHC KC  C +M L+  H
Sbjct: 77  ECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRH 134

Query: 188 PCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 247
            C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM
Sbjct: 135 KCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHSALDM 193

Query: 248 SKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 307
           ++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT    G
Sbjct: 194 TRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253

Mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including p53/TP53, HDAC1 and CDKN1B. Preferentially acts on tetrameric p53/TP53. Contributes to the regulation of CDKN1B and p53/TP53 levels, and thereby contributes to the regulation of the cell cycle progression. Increases AR transcription factor activity.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1

 Score =  208 bits (530), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/247 (43%), Positives = 141/247 (57%), Gaps = 23/247 (9%)

Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQ-------- 123
           GC+HY R C ++APCC++++ CR CH         D    H + R +V +VQ        
Sbjct: 19  GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 69

Query: 124 ---QVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYS 180
              Q C +C    GEY+C  C LFD D  K+QYHC+ CGICRIG  ++FFHC KC  C +
Sbjct: 70  HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLT 127

Query: 181 MLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 240
             L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C
Sbjct: 128 TNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLC 186

Query: 241 SKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY 300
             S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SY
Sbjct: 187 MHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSY 246

Query: 301 NTRLTRG 307
           NT    G
Sbjct: 247 NTAQAGG 253

Mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including p53/TP53, HDAC1 and CDKN1B. Preferentially acts on tetrameric p53/TP53. Increases AR transcription factor activity (By similarity). Contributes to the regulation of CDKN1B and p53/TP53 levels, and thereby contributes to the regulation of the cell cycle progression.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 146/260 (56%), Gaps = 10/260 (3%)

Query: 52  EESTNHNGSTELLRKGFME-----YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINV 106
           +ES  +  S+  L K + +      GC HY R C+++   C+E + CRHCHN+A +++  
Sbjct: 116 KESDENQLSSSDLEKTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLE 175

Query: 107 DQKLRHDIPR--HEVNQVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIG 164
              + + +     +V    Q C  C  CMG Y+C  CKL+DDD +K  YHCD CGICRIG
Sbjct: 176 RPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIG 235

Query: 165 G--CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIH 222
               D++FHC  C  C  + + N+H C+E +   +CP+C EY+F +R+ VI L C H +H
Sbjct: 236 RGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLH 295

Query: 223 KNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKT 282
           + C +E    + Y CP C K++ +++ ++   D EI   PMP  Y      I CNDC   
Sbjct: 296 QRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSR 354

Query: 283 SNVQFHVLAQKCPNCKSYNT 302
            + ++H L  KC +C SYNT
Sbjct: 355 CDTKYHFLGHKCNSCHSYNT 374

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKV 250
           E  +H  C VC E  F+ R ++ + PC H  H+ CL +  E  +  CP+C+  V  ++++
Sbjct: 71  ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLVKWLEVRK-VCPLCNMPVLQLAQL 128

Query: 251 WEKYDREIAATPMPEA 266
             K DR     P+P A
Sbjct: 129 HSKQDRGPPQEPLPGA 144

May play a role in TRPCs intracellular trafficking.

Mus musculus (taxid: 10090)

>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKV 250
           E  +H  C VC E  F+ R ++ + PC H  H+ CL +  E  +  CP+C+  V  ++++
Sbjct: 71  ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLAQL 128

Query: 251 WEKYDREIAATPMPEA 266
             K DR     P+P A
Sbjct: 129 HSKQDRGPPQGPLPGA 144

May play a role in TRPCs intracellular trafficking.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
224092372	300	predicted protein [Populus trichocarpa]	0.872	0.893	0.767	1e-122
225430120	315	PREDICTED: RING finger and CHY zinc fing	0.973	0.949	0.695	1e-120
356563813	308	PREDICTED: RING finger and CHY zinc fing	0.967	0.964	0.691	1e-120
356552549	308	PREDICTED: RING finger and CHY zinc fing	0.967	0.964	0.701	1e-119
296081945	294	unnamed protein product [Vitis vinifera]	0.859	0.897	0.761	1e-119
356552551	323	PREDICTED: RING finger and CHY zinc fing	0.967	0.919	0.668	1e-118
356515508	309	PREDICTED: RING finger and CHY zinc fing	0.957	0.951	0.678	1e-117
255635979	309	unknown [Glycine max]	0.957	0.951	0.675	1e-117
449437104	307	PREDICTED: RING finger and CHY zinc fing	0.931	0.931	0.678	1e-115
297808579	308	zinc finger family protein [Arabidopsis	0.856	0.853	0.726	1e-113

>gi|224092372|ref|XP_002309580.1| predicted protein [Populus trichocarpa] gi|118485648|gb|ABK94674.1| unknown [Populus trichocarpa] gi|222855556|gb|EEE93103.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/280 (76%), Positives = 238/280 (85%), Gaps = 12/280 (4%)

Query: 39  SYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHN 98
           S S   + +F+ +EES N   + ++L KG MEYGC HYRRRCRIRAPCCNE+FDCRHCHN
Sbjct: 22  SCSQHFNEDFIFSEESMNVE-TPQILDKGLMEYGCLHYRRRCRIRAPCCNEVFDCRHCHN 80

Query: 99  EAMNNINVDQKLRHDIPRHEVNQV-----------QQVCVNCGVCMGEYFCESCKLFDDD 147
           EA NNINVDQK RHD+PRHEV QV           QQVC+NCGVCMG+YFCE+CKLFDDD
Sbjct: 81  EAKNNINVDQKHRHDMPRHEVKQVICSLCGTEQEVQQVCINCGVCMGKYFCETCKLFDDD 140

Query: 148 TSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFE 207
           TSKKQYHCDGCGICRIGG +NFFHC KC CCYS LLKNSHPCVEGAMHHDCPVC E+LFE
Sbjct: 141 TSKKQYHCDGCGICRIGGPENFFHCYKCGCCYSNLLKNSHPCVEGAMHHDCPVCFEFLFE 200

Query: 208 TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAY 267
           +R DV VLPCGHTIH++CLKEMR+H+QYACP+CSKSVCDMSKVWEK+D EIAATPMPE Y
Sbjct: 201 SRYDVTVLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPY 260

Query: 268 LNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 307
           LNK VWILCNDCGK+S VQFHV+AQKC NCKSYNTR TR 
Sbjct: 261 LNKMVWILCNDCGKSSEVQFHVVAQKCMNCKSYNTRQTRS 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430120|ref|XP_002284652.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Vitis vinifera] gi|147785653|emb|CAN68688.1| hypothetical protein VITISV_029477 [Vitis vinifera]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/315 (69%), Positives = 246/315 (78%), Gaps = 16/315 (5%)

Query: 9   MAGLEVHHSSHQQFEPMSTS---CKADEIFSTPSYSHLADREFLVTEESTNHNGSTE--L 63
           M  +  +HS  Q FE  +        +E     S +  ++ E +  +E T+H   TE  L
Sbjct: 1   MTEMMANHSDSQHFELKNLKEMIFNVNERDVVKSCAQHSNGECMEIKEPTDHVEITEKEL 60

Query: 64  LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQV- 122
           L KG+M+YGC HYRRRCRIRAPCCNEIFDCRHCHNEA N+I VD+  RHDIPRH+V QV 
Sbjct: 61  LEKGYMQYGCPHYRRRCRIRAPCCNEIFDCRHCHNEAKNSIKVDKAQRHDIPRHQVQQVI 120

Query: 123 ----------QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHC 172
                     +QVC+NCGVCMG+YFCE+CKLFDDDTSKKQYHC+GCGICRIGG +NFFHC
Sbjct: 121 CSLCNTEQEVRQVCINCGVCMGKYFCETCKLFDDDTSKKQYHCNGCGICRIGGRENFFHC 180

Query: 173 NKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH 232
            KCRCCYS+LLKNSHPCVEGAMHHDCPVC EYLFE+  DV V+PCGHTIH+NCLKEMREH
Sbjct: 181 YKCRCCYSVLLKNSHPCVEGAMHHDCPVCFEYLFESTDDVTVMPCGHTIHQNCLKEMREH 240

Query: 233 HQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQ 292
            QYACP+CSKSVCDMSKVWEK+D EIAA PMPE Y NK VWILCNDCGKTS V FHVLAQ
Sbjct: 241 LQYACPLCSKSVCDMSKVWEKFDMEIAAIPMPEPYQNKMVWILCNDCGKTSKVHFHVLAQ 300

Query: 293 KCPNCKSYNTRLTRG 307
           KC NCKSYNTR TRG
Sbjct: 301 KCLNCKSYNTRQTRG 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563813|ref|XP_003550153.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/308 (69%), Positives = 238/308 (77%), Gaps = 11/308 (3%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    S    E    P  S++       + +ST+H    +L  +G+
Sbjct: 1   MGEVAVMHSEPLQFECNDISVNMTEKEVYPPESNVERLPGEESSQSTDHKNINDLQERGY 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQV------ 122
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+DQK RHDIPRH+V QV      
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVKQVICSLCG 120

Query: 123 -----QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRC 177
                QQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GG +NFFHC KC C
Sbjct: 121 TEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGSENFFHCYKCGC 180

Query: 178 CYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYAC 237
           CYS LLKNSHPCVEGAMHHDCPVC EYLFE+R DV V+PCGHTIHK+CL EMREH QY+C
Sbjct: 181 CYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYSC 240

Query: 238 PICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNC 297
           P+C KSVCDMSKVWEK+D EIAATPMPE Y NK VWILCNDCGKTS+VQFH +AQKCPNC
Sbjct: 241 PLCLKSVCDMSKVWEKFDIEIAATPMPEQYQNKMVWILCNDCGKTSHVQFHFVAQKCPNC 300

Query: 298 KSYNTRLT 305
           KSYNTR T
Sbjct: 301 KSYNTRQT 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552549|ref|XP_003544629.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform 1 [Glycine max]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/308 (70%), Positives = 237/308 (76%), Gaps = 11/308 (3%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    +    E    P  S++       + +ST+H     L  KGF
Sbjct: 1   MGEVAVMHSEPLQFECNDITVNMTEKEVYPPESNVDHLPGEESSQSTDHKNINYLQEKGF 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQV------ 122
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+D KLRHDIPRHEV QV      
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDLKLRHDIPRHEVKQVICSLCG 120

Query: 123 -----QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRC 177
                QQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GG +NFFHC KC C
Sbjct: 121 TEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCCGCGICRTGGSENFFHCYKCGC 180

Query: 178 CYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYAC 237
           CYS LLKNSHPCVEGAMHHDCPVC EYLFE+R DV V+PCGHTIHK+CL EMREH QYAC
Sbjct: 181 CYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYAC 240

Query: 238 PICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNC 297
           P+CSKSVCDMSKVWEK+D EIAAT MPE Y NK VWILCNDCGKTS+VQFH +AQKCPNC
Sbjct: 241 PLCSKSVCDMSKVWEKFDLEIAATRMPEQYQNKMVWILCNDCGKTSHVQFHFVAQKCPNC 300

Query: 298 KSYNTRLT 305
           KSYNTR T
Sbjct: 301 KSYNTRQT 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081945|emb|CBI20950.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/277 (76%), Positives = 233/277 (84%), Gaps = 13/277 (4%)

Query: 44  ADREFLVTEESTNHNGSTE--LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAM 101
           ++ E +  +E T+H   TE  LL KG+M+YGC HYRRRCRIRAPCCNEIFDCRHCHNEA 
Sbjct: 18  SNGECMEIKEPTDHVEITEKELLEKGYMQYGCPHYRRRCRIRAPCCNEIFDCRHCHNEAK 77

Query: 102 NNINVDQKLRHDIPRHEVNQV-----------QQVCVNCGVCMGEYFCESCKLFDDDTSK 150
           N+I VD+  RHDIPRH+V QV           +QVC+NCGVCMG+YFCE+CKLFDDDTSK
Sbjct: 78  NSIKVDKAQRHDIPRHQVQQVICSLCNTEQEVRQVCINCGVCMGKYFCETCKLFDDDTSK 137

Query: 151 KQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQ 210
           KQYHC+GCGICRIGG +NFFHC KCRCCYS+LLKNSHPCVEGAMHHDCPVC EYLFE+  
Sbjct: 138 KQYHCNGCGICRIGGRENFFHCYKCRCCYSVLLKNSHPCVEGAMHHDCPVCFEYLFESTD 197

Query: 211 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNK 270
           DV V+PCGHTIH+NCLKEMREH QYACP+CSKSVCDMSKVWEK+D EIAA PMPE Y NK
Sbjct: 198 DVTVMPCGHTIHQNCLKEMREHLQYACPLCSKSVCDMSKVWEKFDMEIAAIPMPEPYQNK 257

Query: 271 KVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 307
            VWILCNDCGKTS V FHVLAQKC NCKSYNTR TRG
Sbjct: 258 MVWILCNDCGKTSKVHFHVLAQKCLNCKSYNTRQTRG 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552551|ref|XP_003544630.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform 2 [Glycine max]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/323 (66%), Positives = 237/323 (73%), Gaps = 26/323 (8%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    +    E    P  S++       + +ST+H     L  KGF
Sbjct: 1   MGEVAVMHSEPLQFECNDITVNMTEKEVYPPESNVDHLPGEESSQSTDHKNINYLQEKGF 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQV------ 122
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+D KLRHDIPRHEV QV      
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDLKLRHDIPRHEVKQVCLFILT 120

Query: 123 --------------------QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 162
                               QQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR
Sbjct: 121 FPIGISTQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCCGCGICR 180

Query: 163 IGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIH 222
            GG +NFFHC KC CCYS LLKNSHPCVEGAMHHDCPVC EYLFE+R DV V+PCGHTIH
Sbjct: 181 TGGSENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIH 240

Query: 223 KNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKT 282
           K+CL EMREH QYACP+CSKSVCDMSKVWEK+D EIAAT MPE Y NK VWILCNDCGKT
Sbjct: 241 KSCLNEMREHFQYACPLCSKSVCDMSKVWEKFDLEIAATRMPEQYQNKMVWILCNDCGKT 300

Query: 283 SNVQFHVLAQKCPNCKSYNTRLT 305
           S+VQFH +AQKCPNCKSYNTR T
Sbjct: 301 SHVQFHFVAQKCPNCKSYNTRQT 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515508|ref|XP_003526442.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/314 (67%), Positives = 243/314 (77%), Gaps = 20/314 (6%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCK-ADEIFSTPSYSHLADREFLVTEEST---NHNGSTELL 64
           M  + V HS     EP+   C     I     Y+ L++ E ++ EES+   N     +L 
Sbjct: 1   MGEVAVMHS-----EPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQV-- 122
            +G+M+YGCQHYRRRCRIRAPCC+EIFDCRHCHNEA NNIN+DQK RHDIPRH+V QV  
Sbjct: 56  ERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVIC 115

Query: 123 ---------QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCN 173
                    QQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GGC+NFFHC+
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCH 175

Query: 174 KCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH 233
           KC CCYS  LKNSHPCVEGAMHHDCP+C EYLFE+  DV VL CGHTIHK+CLKEMREH 
Sbjct: 176 KCGCCYSTQLKNSHPCVEGAMHHDCPICFEYLFESVNDVTVLLCGHTIHKSCLKEMREHF 235

Query: 234 QYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQK 293
           QYACP+C KSVCDMSKVWEK+D EIAATPMPE Y NK VWILCNDCGK+S+VQFH++AQK
Sbjct: 236 QYACPLCLKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKSSHVQFHLVAQK 295

Query: 294 CPNCKSYNTRLTRG 307
           C NCKSYNTR TRG
Sbjct: 296 CLNCKSYNTRETRG 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635979|gb|ACU18335.1| unknown [Glycine max]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/314 (67%), Positives = 242/314 (77%), Gaps = 20/314 (6%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCK-ADEIFSTPSYSHLADREFLVTEEST---NHNGSTELL 64
           M  + V HS     EP+   C     I     Y+ L++ E ++ EES+   N     +L 
Sbjct: 1   MGEVAVMHS-----EPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQV-- 122
            +G+M+YGCQHYRRRCRIRAPCC+EIFDCRHCHNEA NNIN+DQK RHDIPRH+V QV  
Sbjct: 56  ERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVIC 115

Query: 123 ---------QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCN 173
                    QQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GGC+NFFHC+
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCH 175

Query: 174 KCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH 233
           KC CCYS  LKNSHPCVE AMHHDCP+C EYLFE+  DV VL CGHTIHK+CLKEMREH 
Sbjct: 176 KCGCCYSTQLKNSHPCVERAMHHDCPICFEYLFESVNDVTVLLCGHTIHKSCLKEMREHF 235

Query: 234 QYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQK 293
           QYACP+C KSVCDMSKVWEK+D EIAATPMPE Y NK VWILCNDCGK+S+VQFH++AQK
Sbjct: 236 QYACPLCLKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKSSHVQFHLVAQK 295

Query: 294 CPNCKSYNTRLTRG 307
           C NCKSYNTR TRG
Sbjct: 296 CLNCKSYNTRETRG 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437104|ref|XP_004136332.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cucumis sativus] gi|449505475|ref|XP_004162482.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cucumis sativus]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/308 (67%), Positives = 244/308 (79%), Gaps = 22/308 (7%)

Query: 17  SSHQQFEPMST------SCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFME 70
           +++ + +P+ T      +C+  EI +   Y+   D   L  E+S   N   ++L + +M+
Sbjct: 5   ATYSKPQPIGTEENQHMTCRGKEIRTV--YTEQFDSPALPFEKS---NDPQKVLEREYMQ 59

Query: 71  YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQV-------- 122
           +GC HYRRRCRIRAPCCNEIFDCRHCHNE  N+I VDQK RH+IPRHEVNQV        
Sbjct: 60  HGCAHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTE 119

Query: 123 ---QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCY 179
              +Q C+NCGVC G+YFCESCKLFDDDTSKKQYHC+GCGICRIGG +NFFHC+KC CCY
Sbjct: 120 QEVRQDCINCGVCFGKYFCESCKLFDDDTSKKQYHCNGCGICRIGGRENFFHCHKCGCCY 179

Query: 180 SMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPI 239
           S+LLKNSHPCVEGAMHHDCPVC EYLF++  DV V+PCGHTIH+NCLKEMR+H QYACP+
Sbjct: 180 SILLKNSHPCVEGAMHHDCPVCFEYLFDSTNDVTVMPCGHTIHQNCLKEMRDHFQYACPL 239

Query: 240 CSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKS 299
           CSKSVCDMSKVWEK D EIAATP+PE Y NK VWILCNDCGKTS VQ+HV+AQKC NCKS
Sbjct: 240 CSKSVCDMSKVWEKIDMEIAATPIPEPYQNKMVWILCNDCGKTSKVQYHVVAQKCLNCKS 299

Query: 300 YNTRLTRG 307
           YNTR TRG
Sbjct: 300 YNTRQTRG 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808579|ref|XP_002872173.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297318010|gb|EFH48432.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/274 (72%), Positives = 225/274 (82%), Gaps = 11/274 (4%)

Query: 45  DREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNI 104
           D E    E  T  +   ++L +G ME+GC HYRRRC IRAPCCNEIF C HCHNEA NNI
Sbjct: 35  DSESSTLERVTAESLINKVLGRGLMEHGCPHYRRRCCIRAPCCNEIFGCHHCHNEAKNNI 94

Query: 105 NVDQKLRHDIPRHEVNQV-----------QQVCVNCGVCMGEYFCESCKLFDDDTSKKQY 153
           NVDQK RHDIPRH+V QV            Q+C++CGVCMG+YFC+ CKLFDDDTSKKQY
Sbjct: 95  NVDQKQRHDIPRHQVEQVICLLCGTEQEVGQICIHCGVCMGKYFCKVCKLFDDDTSKKQY 154

Query: 154 HCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVI 213
           HCDGCGICRIGG +NFFHC KC CCYS+LLKNSHPCVEGAMHHDCP+C E+LFE+R DV 
Sbjct: 155 HCDGCGICRIGGRENFFHCYKCGCCYSILLKNSHPCVEGAMHHDCPICFEFLFESRNDVT 214

Query: 214 VLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW 273
           VLPCGHTIH+ CL+EMR+H+QYACP+CSKSVCDMSKVWEK+D EIAATPMPE Y N+ V 
Sbjct: 215 VLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQ 274

Query: 274 ILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 307
           ILCNDCGK S V++HV+AQKCPNCKSYNTR TRG
Sbjct: 275 ILCNDCGKKSEVKYHVVAQKCPNCKSYNTRQTRG 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2172656	291	AT5G22920 [Arabidopsis thalian	0.830	0.876	0.531	5.6e-84
TAIR|locus:2179474	328	AT5G25560 [Arabidopsis thalian	0.837	0.783	0.571	2.2e-82
TAIR|locus:2180074	267	MIEL1 "MYB30-Interacting E3 Li	0.775	0.891	0.488	8.9e-70
TAIR|locus:2099212	287	AT3G62970 [Arabidopsis thalian	0.765	0.818	0.459	1.6e-61
UNIPROTKB|J9NZR5	259	RCHY1 "Uncharacterized protein	0.739	0.876	0.405	7.4e-50
UNIPROTKB|Q96PM5	261	RCHY1 "RING finger and CHY zin	0.755	0.888	0.401	9.5e-50
RGD|1359180	261	Rchy1 "ring finger and CHY zin	0.755	0.888	0.401	1.2e-49
UNIPROTKB|A4IFE2	261	RCHY1 "RCHY1 protein" [Bos tau	0.739	0.869	0.405	1.5e-49
MGI|MGI:1915348	261	Rchy1 "ring finger and CHY zin	0.755	0.888	0.393	1.1e-48
ZFIN|ZDB-GENE-040801-73	264	rchy1 "ring finger and CHY zin	0.739	0.859	0.391	2.3e-46

TAIR|locus:2172656 AT5G22920 [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 142/267 (53%), Positives = 181/267 (67%)

Query:    53 ESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRH 112
             E+  +     L+  G   YGC HYRRRC+IRAPCC+EIFDCRHCHNEA ++++++Q  RH
Sbjct:     7 ENEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRH 66

Query:   113 DIPRHEXXXXXXXXXXXXXX-----------MGEYFCESCKLFDDDTSKKQYHXXXXXXX 161
             ++PRHE                         MG+YFC  CK FDDD SKKQYH       
Sbjct:    67 ELPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGIC 126

Query:   162 XXXXXXNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTI 221
                   NFFHC +CRCCYS ++++ H CVEGAMHH+CPVC EYLF++ +D+ VL CGHT+
Sbjct:   127 RTGGEENFFHCKRCRCCYSKIMEDKHQCVEGAMHHNCPVCFEYLFDSTRDITVLRCGHTM 186

Query:   222 HKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGK 281
             H  C K+M  H++Y CP+CSKS+CDMS +W+K D E+AA PMP+ Y NK VWILCNDCG 
Sbjct:   187 HLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGS 246

Query:   282 TSNVQFHVLAQKCPNCKSYNTRLT-RG 307
              +NV+FH++A KC +C SYNTR T RG
Sbjct:   247 NTNVRFHLIAHKCSSCGSYNTRQTQRG 273

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2179474 AT5G25560 [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 160/280 (57%), Positives = 186/280 (66%)

Query:     9 MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTE-----L 63
             M  +  +H + QQ + MS   K +   S  S+ H  + E   +E ST    + E     +
Sbjct:     1 MGDVYFNHFA-QQLQ-MSDQEKGE--MSRHSHPHSINEE---SESSTLERVAAESLTNKV 53

Query:    64 LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEXXXXX 123
             L +G MEYGC HYRRRC IRAPCCNEIF C HCH EA NNINVDQK RHDIPRH+     
Sbjct:    54 LDRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVI 113

Query:   124 XXXXXXXXX-----------MGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHC 172
                                 MG+YFC+ CKL+DDDTSKKQYH             NFFHC
Sbjct:   114 CLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENFFHC 173

Query:   173 NKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH 232
              KC CCYS+LLKN HPCVEGAMHHDCP+C E+LFE+R DV VLPCGHTIH+ CL+EMR+H
Sbjct:   174 YKCGCCYSILLKNGHPCVEGAMHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDH 233

Query:   233 HQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKV 272
             +QYACP+CSKSVCDMSKVWEK+D EIAATPMPE Y N+ V
Sbjct:   234 YQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMV 273

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2180074 MIEL1 "MYB30-Interacting E3 Ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 123/252 (48%), Positives = 160/252 (63%)

Query:    64 LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNI-NVDQKLRHDIPRHEXXX- 121
             L  G M +GC+HY+RRC+IRAPCCNE+FDCRHCHNE+ + + N+    RHD+ R +    
Sbjct:     9 LHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLRNIYD--RHDLVRQDVKQV 66

Query:   122 ----------XXXXXXXXXXXMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFH 171
                                  MGEYFC  C  +DDDT K+Q+H             NFFH
Sbjct:    67 ICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCGICRVGGRENFFH 126

Query:   172 CNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE 231
             C KC  CY++ L+N+H CVE +M H CP+C EYLF++ +D  V+ CGHT+H  C  EM +
Sbjct:   127 CKKCGSCYAVGLRNNHRCVENSMRHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIK 186

Query:   232 HHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLA 291
               ++ CPICS+SV DMSK W++ D EI AT MP  Y +KKVWILCNDC  T+ V FH++ 
Sbjct:   187 RDKFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFHIIG 246

Query:   292 QKCPNCKSYNTR 303
             QKC +C+SYNTR
Sbjct:   247 QKCGHCRSYNTR 258

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2099212 AT3G62970 [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 114/248 (45%), Positives = 147/248 (59%)

Query:    67 GFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEXXXXXXXX 126
             G  ++GC+HY+RRC+IRAPCCN IF CRHCHN++ N++  D K RHD+ R          
Sbjct:    29 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSLP-DPKERHDLVRQNVKQVVCSI 87

Query:   127 XXXXXX-----------MGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKC 175
                              MGEYFC+ CK FDDD SK+Q+H              FFHC  C
Sbjct:    88 CQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHCDDCGICRVGGRDKFFHCQNC 147

Query:   176 RCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQY 235
               CY M L++ H C+E +  + CPVC EYLF++ +   V+ CGHT+H +C ++M   +QY
Sbjct:   148 GACYGMGLRDKHSCIENSTKNSCPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINENQY 207

Query:   236 ACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCP 295
              CPIC+KS+ DMS  W   D EI+AT MP  Y   +V ILCNDC K S   FH+L  KC 
Sbjct:   208 RCPICAKSMVDMSPSWHLLDFEISATEMPVEY-KFEVSILCNDCNKGSKAMFHILGHKCS 266

Query:   296 NCKSYNTR 303
             +C SYNTR
Sbjct:   267 DCGSYNTR 274

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

UNIPROTKB|J9NZR5 RCHY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 95/234 (40%), Positives = 131/234 (55%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQ-KLRHD--IPRHEXXXXXXXXXX 128
             GC+HY R C ++APCC++++ CR CH+   ++  +D+ K++    I   +          
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDH-QLDRFKVKEVQCINCEKIQHAQQSCEE 77

Query:   129 XXXXMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHP 188
                  GEY+C  C LFD D  KKQYH             +FFHC KC  C +M L+  H 
Sbjct:    78 CSTLFGEYYCSICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGKHK 135

Query:   189 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 248
             C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM+
Sbjct:   136 CIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMT 194

Query:   249 KVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 302
             + W + D E+A TPMP  Y N  V ILCNDC + S VQFH+L  KC  C+SYNT
Sbjct:   195 RYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNRRSTVQFHILGMKCNICESYNT 248

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 96/239 (40%), Positives = 132/239 (55%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQ-KLRHD--IPRHEXXXXXXXXXX 128
             GC+HY R C ++APCC++++ CR CH+   ++  +D+ K++    I   +          
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDH-QLDRFKVKEVQCINCEKIQHAQQTCEE 77

Query:   129 XXXXMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHP 188
                  GEY+C+ C LFD D  KKQYH             +FFHC KC  C +M L+  H 
Sbjct:    78 CSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHK 135

Query:   189 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 248
             C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM+
Sbjct:   136 CIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMT 194

Query:   249 KVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 307
             + W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT    G
Sbjct:   195 RYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253

GO:0005102 "receptor binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008270 "zinc ion binding" evidence=IDA

GO:0002039 "p53 binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 96/239 (40%), Positives = 130/239 (54%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQ-KLRHD--IPRHEXXXXXXXXXX 128
             GC+HY R C ++APCC++++ CR CH+   ++  +D+ K++    I   +          
Sbjct:    19 GCEHYDRACLLKAPCCDKLYTCRLCHDTHEDH-QLDRFKVKEVQCINCEKLQHAQQTCED 77

Query:   129 XXXXMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHP 188
                  GEY+C  C LFD D  KKQYH             +FFHC KC  C +M L+  H 
Sbjct:    78 CSTLFGEYYCSICHLFDKD--KKQYHCESCGICRIGPKEDFFHCLKCNLCLAMTLRGKHK 135

Query:   189 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 248
             C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM+
Sbjct:   136 CIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMT 194

Query:   249 KVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 307
             + W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SYNT    G
Sbjct:   195 RYWRQLDIEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253

GO:0000151 "ubiquitin ligase complex" evidence=IEA;ISO

GO:0002039 "p53 binding" evidence=IEA;ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0051865 "protein autoubiquitination" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|A4IFE2 RCHY1 "RCHY1 protein" [Bos taurus (taxid:9913)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 95/234 (40%), Positives = 131/234 (55%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQ-KLRHD--IPRHEXXXXXXXXXX 128
             GC+HY R C ++APCC++++ CR CH+   ++  +D+ K++    I   +          
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDH-QLDRFKVKEVQCINCEKIQHAQQTCEE 77

Query:   129 XXXXMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHP 188
                  GEY+C  C LFD D  KKQYH             +FFHC KC  C +M L+  H 
Sbjct:    78 CSTLFGEYYCSVCHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGKHK 135

Query:   189 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 248
             C+E     +CP+C E +  +R    VLPCGH +H+ C ++M +   Y CP+C +S  DMS
Sbjct:   136 CIENVSRQNCPICLEDIHTSRIAAQVLPCGHLLHRTCYEDMLKEG-YRCPLCMRSALDMS 194

Query:   249 KVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 302
             + W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT
Sbjct:   195 RSWRQRDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYNT 248

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1915348 Rchy1 "ring finger and CHY zinc finger domain containing 1" [Mus musculus (taxid:10090)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 94/239 (39%), Positives = 129/239 (53%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQ-KLRHD--IPRHEXXXXXXXXXX 128
             GC+HY R C ++APCC++++ CR CH+   ++  +D+ K++    I   +          
Sbjct:    19 GCEHYDRACLLKAPCCDKLYTCRLCHDTNEDH-QLDRFKVKEVQCINCEKLQHAQQTCED 77

Query:   129 XXXXMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHP 188
                  GEY+C  C LFD D  K+QYH             +FFHC KC  C +  L+  H 
Sbjct:    78 CSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHK 135

Query:   189 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 248
             C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM+
Sbjct:   136 CIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMT 194

Query:   249 KVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 307
             + W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SYNT    G
Sbjct:   195 RYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0002039 "p53 binding" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=ISO

ZFIN|ZDB-GENE-040801-73 rchy1 "ring finger and CHY zinc finger domain containing 1" [Danio rerio (taxid:7955)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 92/235 (39%), Positives = 122/235 (51%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHN----EAMNNINVDQKLRHDIPRHEXXXXXXXXX 127
             GC+HY R C ++APCC + + CR CH+      M+   V Q+++  +  +          
Sbjct:     7 GCEHYVRSCLLKAPCCGKFYVCRLCHDAEETHQMDRFKV-QEVKCAVC-NTIQEAQQICK 64

Query:   128 XXXXXMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSH 187
                   GEY+C+ C LFD D  KKQYH              +FHC KC  C    LK+ H
Sbjct:    65 ECEVKFGEYYCDICHLFDKD--KKQYHCQPCGICRIGPREKYFHCTKCNLCLGTELKDKH 122

Query:   188 PCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 247
              CVE     +CPVC E +   R    VLPCGH +H  C  +M +   Y CP+C  S  +M
Sbjct:   123 KCVENVSRQNCPVCMEDIHTFRVGAHVLPCGHLLHGTCFDDMLKTGAYRCPLCMHSAFNM 182

Query:   248 SKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 302
              + W++ D EI+ TPMP  Y +  V I+CNDC   S V FHVL  KC +C SYNT
Sbjct:   183 KEYWKQMDEEISQTPMPTEYQDSTVKIICNDCQARSTVSFHVLGMKCSSCGSYNT 237

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
pfam05495	74	pfam05495, zf-CHY, CHY zinc finger	2e-11
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	6e-05
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	7e-05
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	9e-05
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-04
smart00184	40	smart00184, RING, Ring finger	3e-04
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	0.002

>gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 19/83 (22%)

Query: 73  CQHYRRR-CRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQ-QVC---- 126
           C+HY R  C IRAPCCN+ + CR CH+E  +         H + R  V  V   VC    
Sbjct: 1   CKHYHRNLCAIRAPCCNKYYPCRLCHDELED---------HPLDRWNVKAVLCGVCRTEQ 51

Query: 127 ----VNCGVCMGEYFCESCKLFD 145
                NCGV   +Y+C  CKLF 
Sbjct: 52  TVQEYNCGVEFADYYCPICKLFF 74

This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues. We have named this domain after the N-terminal motif CXHY. This domain can be found in isolation in some proteins, but is also often associated with pfam00097. One of the proteins in this family is a mitochondrial intermembrane space protein called Hot13. This protein is involved in the assembly of small TIM complexes. Length = 74

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
           +CP+C E     R+ V++LPCGH   ++C+ +  +  +  CP+C   +
Sbjct: 1   ECPICLEEF---REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKS 243
            +CP+C +  FE  ++V+VLPCGH  HK CL +        CP+C   
Sbjct: 1   DECPICLDE-FEPGEEVVVLPCGHVFHKECLDKWLRSS-NTCPLCRAP 46

Length = 46

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 189 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC-DM 247
           C++   H D       L  T +    LPCGH +H +CLK   E  Q  CPIC + V  D 
Sbjct: 293 CMDEMFHPDHEPLPRGLDMTPKR---LPCGHILHLHCLKNWLERQQ-TCPICRRPVIFDQ 348

Query: 248 SK 249
           S 
Sbjct: 349 SS 350

Length = 491

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
           +C +C    F     + VLPC H  H  C+ +    +   CP+C  ++
Sbjct: 325 ECAICMSN-FIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 240
           CP+C E   +   D ++LPCGHT  ++C+++  E     CPIC
Sbjct: 1   CPICLEEYLK---DPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEM-REHHQYACPI 239
           CP+  E + +     ++LPCGH   +  L+++ +   ++ CP 
Sbjct: 13  CPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
KOG1940	276	consensus Zn-finger protein [General function pred	100.0
PF14599	61	zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.	99.93
PF05495	71	zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc	99.68
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.3
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.16
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.96
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.94
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.91
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.83
PHA02929	238	N1R/p28-like protein; Provisional	98.75
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.75
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.71
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.7
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.68
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.64
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.62
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.59
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.58
PF14634	44	zf-RING_5: zinc-RING finger domain	98.57
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.51
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.5
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.31
PHA02926	242	zinc finger-like protein; Provisional	98.29
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.24
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.08
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.06
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.03
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	97.87
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.84
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	97.82
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.78
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	97.75
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.71
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.65
COG4357	105	Zinc finger domain containing protein (CHY type) [	97.58
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.54
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.42
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	97.39
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.35
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.2
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.08
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.79
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	96.76
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.69
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.57
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.56
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	96.55
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	96.54
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.47
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	96.42
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.27
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.22
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.0
COG5219	1525	Uncharacterized conserved protein, contains RING Z	95.92
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.73
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.65
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.54
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.45
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	95.44
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.63
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.55
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.49
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	94.42
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.98
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	93.88
COG5175	480	MOT2 Transcriptional repressor [Transcription]	93.78
KOG0297	391	consensus TNF receptor-associated factor [Signal t	93.6
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	93.6
KOG4445	368	consensus Uncharacterized conserved protein, conta	93.31
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	93.29
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	92.84
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	92.65
PF04641	260	Rtf2: Rtf2 RING-finger	91.77
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.73
KOG3002	299	consensus Zn finger protein [General function pred	91.54
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	91.37
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	91.04
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	90.67
TIGR00100	115	hypA hydrogenase nickel insertion protein HypA. In	90.43
PRK03824	135	hypA hydrogenase nickel incorporation protein; Pro	89.77
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.62
COG5152	259	Uncharacterized conserved protein, contains RING a	89.36
PRK00564	117	hypA hydrogenase nickel incorporation protein; Pro	89.26
PHA02862	156	5L protein; Provisional	89.22
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	88.39
KOG1002	791	consensus Nucleotide excision repair protein RAD16	88.34
PHA02825	162	LAP/PHD finger-like protein; Provisional	88.31
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.22
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	88.09
PRK12380	113	hydrogenase nickel incorporation protein HybF; Pro	88.06
PRK03681	114	hypA hydrogenase nickel incorporation protein; Val	87.7
KOG3039	303	consensus Uncharacterized conserved protein [Funct	87.69
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	87.31
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	87.17
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	87.0
KOG2660	331	consensus Locus-specific chromosome binding protei	86.68
PF01155	113	HypA: Hydrogenase expression/synthesis hypA family	86.01
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	85.65
KOG4739	233	consensus Uncharacterized protein involved in syna	84.68
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	83.41
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	82.96
COG5222	427	Uncharacterized conserved protein, contains RING Z	82.69
PRK00762	124	hypA hydrogenase nickel incorporation protein; Pro	82.59
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	81.82
PHA03096	284	p28-like protein; Provisional	80.47
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	80.29

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=100.00  E-value=6.8e-65  Score=476.02  Aligned_cols=236  Identities=53%  Similarity=1.070  Sum_probs=227.7

Q ss_pred             CCchhcccCCCcCCCcccccCceeEcCccCCeecCCccccccccCcCcCCcCCcccCcccccc-----------cccccc
Q 021794           59 GSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQ-----------VQQVCV  127 (307)
Q Consensus        59 ~~~~~~~~~~~~~GC~HY~R~Cki~aPCC~~~y~CR~CHde~~~~~~~~~~~~H~l~R~~v~e-----------v~~~C~  127 (307)
                      .+.++.|++.+.+||+||+|+|++++|||++||+||+||+++         ++|.++|+.|.+           +++.|.
T Consensus        21 ~~~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s---------~~h~~~r~~v~~~~C~~C~~~q~~~~~c~   91 (276)
T KOG1940|consen   21 IHSDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNES---------EDHDLDRKTVYELLCMKCRKIQPVGQICS   91 (276)
T ss_pred             cccccccccccccCCchhhhccccccccccceeeeEEecChh---------hhcccchhhhhhhhhhhHHhhhhhhhccc
Confidence            345788999999999999999999999999999999999987         489999998876           789999


Q ss_pred             cCCcccceeecCccccccCCCCCCccccCCCCcccccCCcceeeccCCCcceeccccCCccccCCCCCCCCccccccccc
Q 021794          128 NCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFE  207 (307)
Q Consensus       128 nCg~~f~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~  207 (307)
                      +|+..||+|||.+|+||||+++ .||||+.|||||+|++++||||++|+.|++..+.+.|+|+|++++.+||||.|++|+
T Consensus        92 ~c~~~~g~~~c~~C~l~dd~~~-~~~hC~~C~icr~g~~~~~fhc~~c~~c~~~~~~~~H~c~e~~~~~ncPic~e~l~~  170 (276)
T KOG1940|consen   92 NCHVELGEYYCLICKLFDDDPS-KQYHCDLCGICREGLGLDFFHCKKCKACLSAYLSNWHKCVERSSEFNCPICKEYLFL  170 (276)
T ss_pred             cchhhhhhhcCccccccccccc-ceeccccccccccccccchhHHhhhHhHHhhhcccccchhhhcccCCCchhHHHhcc
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHhcCCCChhhhcCceeEEcCCCCCCccccc
Q 021794          208 TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQF  287 (307)
Q Consensus       208 s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~lD~eia~~pmPeey~~~~~~IlCnDC~~~s~~~f  287 (307)
                      +...+..|+|||++|..|++++...+ |+||+|.+ +.||+.+|+++|.+|+++|||++|.+++++|+||||+..++++|
T Consensus       171 s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~-~~d~~~~~~~~d~~l~~~~~p~~y~~~~~~i~cndC~~~~~~k~  248 (276)
T KOG1940|consen  171 SFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK-PGDMSHYFRKLDKELAGSPMPEEYKNKTQDILCNDCGSGTNVKY  248 (276)
T ss_pred             ccccCCccCcccchHHHHHHHHhccC-CCCCcccc-hHHHHHHHHHHHHHHhcCCCCchhhchhheeeccCCCCCCccce
Confidence            99999999999999999999999876 99999999 99999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCCCccccccC
Q 021794          288 HVLAQKCPNCKSYNTRLTR  306 (307)
Q Consensus       288 H~lg~kC~~C~SYNT~~~~  306 (307)
                      |||++||+.|+|||||+++
T Consensus       249 ~~l~~kc~~c~~~~~r~~~  267 (276)
T KOG1940|consen  249 HILYHKCGKCGSYNTRMIS  267 (276)
T ss_pred             ehhhhhCCCcccceeeecc
Confidence            9999999999999999985

>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A

Probab=99.93  E-value=3.1e-27  Score=177.20  Aligned_cols=61  Identities=66%  Similarity=1.160  Sum_probs=22.6

Q ss_pred             cCchhHHHHHhHHHHhcCCCChhhhcCceeEEcCCCCCCccccceeeeccCCCCCCccccc
Q 021794          244 VCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRL  304 (307)
Q Consensus       244 ~~dm~~~~~~lD~eia~~pmPeey~~~~~~IlCnDC~~~s~~~fH~lg~kC~~C~SYNT~~  304 (307)
                      +.||+.+|+.||++|+++|||++|++++++|+||||+++|+++||||||||.+|+||||||
T Consensus         1 v~dM~~~w~~LD~~i~~~pmP~~Y~~~~v~IlCNDC~~~s~v~fH~lg~KC~~C~SYNT~q   61 (61)
T PF14599_consen    1 VVDMSAYWRMLDAEIAATPMPEEYRNKKVWILCNDCNAKSEVPFHFLGHKCSHCGSYNTRQ   61 (61)
T ss_dssp             ---------------------------EEEEEESSS--EEEEE--TT----TTTS---EEE
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHhCCEEEEECCCCCCccceeeeHhhhcCCCCCCcccCC
Confidence            4689999999999999999999999999999999999999999999999999999999997

>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.68  E-value=7.9e-18  Score=129.44  Aligned_cols=62  Identities=40%  Similarity=1.047  Sum_probs=42.6

Q ss_pred             CcccccC-ceeEcCccCCeecCCccccccccCcCcCCcCCcccCcccccccccccccCCccc--------ceeecCcccc
Q 021794           73 CQHYRRR-CRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQQVCVNCGVCM--------GEYFCESCKL  143 (307)
Q Consensus        73 C~HY~R~-Cki~aPCC~~~y~CR~CHde~~~~~~~~~~~~H~l~R~~v~ev~~~C~nCg~~f--------~~YfC~~Ckl  143 (307)
                      |+||+|+ |+|++|||++|||||+||||..         +|+|+|..++  ...|..|+..+        |+|||++|++
T Consensus         1 C~HY~~~~~~~~~~cC~~~y~C~~CHde~~---------~H~~~~~~~~--~v~Cg~C~~~~~~~~~~c~~~~~C~~C~~   69 (71)
T PF05495_consen    1 CKHYHRSLCAIRFPCCGKYYPCRFCHDELE---------DHPFDRWPVK--RVICGKCRTEQPIDEYSCGADYFCPICGL   69 (71)
T ss_dssp             -SS---S-EEEEETTTTEEESSHHHHHHCS---------SS---TTT----EEEETTT--EEES-SBTT--SEEETTTTE
T ss_pred             CCCCCCCcEEEECCcccCeecHHHHHHHhc---------cCcccccccc--CeECCCCCCccChhhhhcCCCccCcCcCC
Confidence            8999999 9999999999999999999973         7999999988  44455554433        6799999999


Q ss_pred             cc
Q 021794          144 FD  145 (307)
Q Consensus       144 ~d  145 (307)
                      ||
T Consensus        70 ~~   71 (71)
T PF05495_consen   70 YF   71 (71)
T ss_dssp             EE
T ss_pred             CC
Confidence            86

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Pirh2 is an eukaryotic ubiquitin protein ligase, which has been shown to promote p53 degradation in mammals. Pirh2 physically interacts with p53 and promotes ubiquitination of p53 independently of MDM2. Like MDM2, Pirh2 is thought to participate in an autoregulatory feedback loop that controls p53 function. Pirh2 proteins contain three distinct zinc fingers, the CHY-type, the CTCHY-type which is C-terminal to the CHY-type zinc finger and a RING finger. The CHY-type zinc finger has no currently known function []. As well as Pirh2, the CHY-type zinc finger is also found in the following proteins: Yeast helper of Tim protein 13. Hot13 may have a role in the assembly and recycling of the small Tims, a complex of the mitochondrial intermembrane space that participates in the TIM22 import pathway for assembly of the inner membrane [] Several plant hypothetical proteins that also contain haemerythrin cation binding domains Several protozoan hypothetical proteins that also contain a Myb domain The solution structure of this zinc finger has been solved and binds 3 zinc atoms as shown in the following schematic representation: ++---------+-----+ || | | CXHYxxxxxxxxxCCxxxxxCxxCHxxxxxHxxxxxxxxxxxCxxCxxxxxxxxxCxxC | | | | | | | | +-+-----------------+--+ +--+---------+--+ 'C': conserved cysteine involved in the binding of one zinc atom. 'H': conserved histidine involved in the binding of one zinc atom. More information about these proteins can be found at Protein of the Month: Zinc Fingers []; GO: 0008270 zinc ion binding; PDB: 2DKT_A 2K2C_A.

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.30  E-value=8.6e-13  Score=91.55  Aligned_cols=44  Identities=39%  Similarity=1.061  Sum_probs=37.0

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCC
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICS  241 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCr  241 (307)
                      ++||||++.+. ..+.++.|+|||.||.+||.+|++. +.+||+||
T Consensus         1 d~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFE-DGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHH-TTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCCcCCChhhc-CCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            37999999754 4667889999999999999999986 58999997

...

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.16  E-value=2.1e-11  Score=97.27  Aligned_cols=51  Identities=20%  Similarity=0.466  Sum_probs=41.1

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC--CCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~  245 (307)
                      +++..||.|..  ....-++++..|+|.||.+||.+||+..  +.+||+||+.+.
T Consensus        30 ~fdg~Cp~Ck~--Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   30 PFDGCCPDCKF--PGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             ccccCCCCccC--CCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            55778999984  4445567778999999999999999863  568999998764

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.96  E-value=4.6e-10  Score=86.56  Aligned_cols=46  Identities=28%  Similarity=0.808  Sum_probs=35.5

Q ss_pred             CCCCcccccccccC---------cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCC
Q 021794          195 HHDCPVCCEYLFET---------RQDVIVLPCGHTIHKNCLKEMREHHQYACPICS  241 (307)
Q Consensus       195 ~~~CPIClE~lf~s---------~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCr  241 (307)
                      +++|+||++.|.+.         ..++++++|||.||..||.+||+. +.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            56699999887332         244566799999999999999985 56999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=4e-10  Score=109.77  Aligned_cols=50  Identities=28%  Similarity=0.824  Sum_probs=45.2

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..|+||||+ |..++.++.|||+|.||..|+++||...+..||+|+.++..
T Consensus       230 ~~CaIClEd-Y~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLED-YEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecc-cccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            589999997 88899999999999999999999998755669999998874

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.91  E-value=1.2e-09  Score=72.91  Aligned_cols=45  Identities=33%  Similarity=1.041  Sum_probs=37.1

Q ss_pred             CCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCccc
Q 021794          197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV  244 (307)
Q Consensus       197 ~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~  244 (307)
                      .|+||++.+   ..++.+++|||.||..|+..|++..+.+||+|++.+
T Consensus         1 ~C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF---REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh---hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999975   335666779999999999999986568899999764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.83  E-value=2.2e-09  Score=72.85  Aligned_cols=39  Identities=41%  Similarity=1.110  Sum_probs=32.7

Q ss_pred             CcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCC
Q 021794          198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC  240 (307)
Q Consensus       198 CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiC  240 (307)
                      ||||++.+.+   ++++++|||+|+.+|+.+|++. +.+||+|
T Consensus         1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccC---cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            7999986443   5688999999999999999997 7899998

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.75  E-value=7e-09  Score=96.73  Aligned_cols=54  Identities=19%  Similarity=0.609  Sum_probs=42.0

Q ss_pred             CCCCCCCcccccccccCcc----eeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          192 GAMHHDCPVCCEYLFETRQ----DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       192 ~~~~~~CPIClE~lf~s~~----~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .+.+..||||+|.+.+...    -.++++|||.||.+||.+|++. +.+||+||..+..
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~  228 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeE
Confidence            3456899999997654321    1245689999999999999984 6899999998763

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.75  E-value=6.9e-09  Score=72.26  Aligned_cols=39  Identities=38%  Similarity=1.199  Sum_probs=28.9

Q ss_pred             CcccccccccCcceeEEcCCCCcccHHHHHHHHhcC---CCCCCCC
Q 021794          198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH---QYACPIC  240 (307)
Q Consensus       198 CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~---~~~CPiC  240 (307)
                      ||||++. |.   +++.|+|||+|+..||..|++..   .+.||+|
T Consensus         1 CpiC~~~-~~---~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDL-FK---DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB--S---SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchh-hC---CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999995 54   47899999999999999988753   2579998

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=5.1e-09  Score=102.63  Aligned_cols=56  Identities=38%  Similarity=0.820  Sum_probs=47.1

Q ss_pred             CCCCCCCcccccccccCc---------ceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCccc-Cchh
Q 021794          192 GAMHHDCPVCCEYLFETR---------QDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV-CDMS  248 (307)
Q Consensus       192 ~~~~~~CPIClE~lf~s~---------~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~-~dm~  248 (307)
                      ...+..|.||+|.|+.++         ..+..|||||.+|.+|++.|+++ +.+|||||.++ .|+.
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ifd~~  349 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVIFDQS  349 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccccccC
Confidence            466889999999988776         34578999999999999999985 68999999994 4543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.70  E-value=1e-08  Score=72.92  Aligned_cols=47  Identities=34%  Similarity=0.982  Sum_probs=38.0

Q ss_pred             CCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..|+||++.    ...++++||||. |+..|+..|++ ...+||+||+++.+
T Consensus         2 ~~~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFEN----PRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSS----BSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred             cCCCccCCcc----CCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence            3579999985    235788999999 99999999998 56899999998753

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.68  E-value=1.4e-08  Score=68.98  Aligned_cols=40  Identities=43%  Similarity=1.116  Sum_probs=33.4

Q ss_pred             CcccccccccCcceeEEcCCCCcccHHHHHHHHh-cCCCCCCCC
Q 021794          198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE-HHQYACPIC  240 (307)
Q Consensus       198 CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~-~~~~~CPiC  240 (307)
                      ||||++.+..   +..+++|||.|+..|+.+|++ .....||+|
T Consensus         1 C~iC~~~~~~---~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFED---PVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSS---EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccC---CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            7999996332   446899999999999999998 567889998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.64  E-value=2.4e-08  Score=64.32  Aligned_cols=39  Identities=44%  Similarity=1.130  Sum_probs=33.2

Q ss_pred             CcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCC
Q 021794          198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC  240 (307)
Q Consensus       198 CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiC  240 (307)
                      |+||++.    ...++.++|||.||..|+..|++....+||+|
T Consensus         1 C~iC~~~----~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE----LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC----CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899985    34678899999999999999998556789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=6e-09  Score=81.81  Aligned_cols=51  Identities=24%  Similarity=0.490  Sum_probs=40.2

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc--CCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiCrks~~  245 (307)
                      ++++.||-|.  +....-++++..|.|.||..||.+|+..  ++-.||+||+.+.
T Consensus        29 ~Fdg~Cp~Ck--~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   29 PFDGCCPDCK--LPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             ccCCcCCCCc--CCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            5678899998  4555556666689999999999999965  3456999998764

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.59  E-value=2.6e-08  Score=70.04  Aligned_cols=40  Identities=38%  Similarity=1.053  Sum_probs=24.5

Q ss_pred             CcccccccccCcceeEEcCCCCcccHHHHHHHHhcC---CCCCC
Q 021794          198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH---QYACP  238 (307)
Q Consensus       198 CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~---~~~CP  238 (307)
                      ||||+| +.+...++++|+|||+|.++|+++|++.+   .++||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 55556678899999999999999998853   56687

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=3.1e-08  Score=95.01  Aligned_cols=54  Identities=26%  Similarity=0.663  Sum_probs=45.6

Q ss_pred             CCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       191 E~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      |....-+|+|||++ |...+.+++|||.|.||..|+++|+...+.+||+||..+.
T Consensus       319 ea~~GveCaICms~-fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         319 EADKGVECAICMSN-FIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             hcCCCceEEEEhhh-hcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            33445789999998 5667789999999999999999999865688999998764

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.57  E-value=5.2e-08  Score=67.90  Aligned_cols=44  Identities=32%  Similarity=0.839  Sum_probs=37.0

Q ss_pred             CCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 021794          197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSK  242 (307)
Q Consensus       197 ~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrk  242 (307)
                      .|+||++.+ .....+.+++|||+|+..|+..+. .....||+||+
T Consensus         1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            489999964 555678899999999999999998 34678999986

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.51  E-value=1e-07  Score=86.47  Aligned_cols=56  Identities=25%  Similarity=0.623  Sum_probs=42.8

Q ss_pred             ccccCCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc---------------CCCCCCCCCcccCc
Q 021794          187 HPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---------------HQYACPICSKSVCD  246 (307)
Q Consensus       187 H~CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---------------~~~~CPiCrks~~d  246 (307)
                      .+-++...+..||||++. +.   ++++++|||.||..||.+|+..               ...+||+||..+..
T Consensus        10 ~~~~~~~~~~~CpICld~-~~---dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         10 TTLVDSGGDFDCNICLDQ-VR---DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             ceeccCCCccCCccCCCc-CC---CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            344444567899999995 33   4567899999999999999852               23579999998864

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.50  E-value=7.8e-08  Score=76.18  Aligned_cols=50  Identities=20%  Similarity=0.436  Sum_probs=37.7

Q ss_pred             CCCCcccccccccC-cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFET-RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s-~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      .+.||-|+-.+... .-+++...|.|.||.+||..||.. +..||++|+++.
T Consensus        31 m~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~   81 (88)
T COG5194          31 MGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV   81 (88)
T ss_pred             cCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence            45677776533222 234566789999999999999986 789999999875

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.31  E-value=2.8e-07  Score=92.13  Aligned_cols=81  Identities=27%  Similarity=0.646  Sum_probs=66.0

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHhcCCCChhhhcCceeEE
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWIL  275 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~lD~eia~~pmPeey~~~~~~Il  275 (307)
                      -.||||||.|..+...++...|.|+||-.|+..|..   .+||+||....+ +               +.      ..-+
T Consensus       176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~p-~---------------~v------e~~~  230 (493)
T KOG0804|consen  176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQSP-S---------------VV------ESSL  230 (493)
T ss_pred             CCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcCc-c---------------hh------hhhh
Confidence            479999999999998899999999999999999963   689999964331 1               11      1346


Q ss_pred             cCCCCCCccccceeeeccCC--CCCCccccc
Q 021794          276 CNDCGKTSNVQFHVLAQKCP--NCKSYNTRL  304 (307)
Q Consensus       276 CnDC~~~s~~~fH~lg~kC~--~C~SYNT~~  304 (307)
                      |..|+...+.   |+-+.|+  .||-|+-..
T Consensus       231 c~~c~~~~~L---wicliCg~vgcgrY~egh  258 (493)
T KOG0804|consen  231 CLACGCTEDL---WICLICGNVGCGRYKEGH  258 (493)
T ss_pred             hhhhcccccE---EEEEEccceecccccchh
Confidence            9999998888   9999998  599998654

>PHA02926 zinc finger-like protein; Provisional

Probab=98.29  E-value=4.6e-07  Score=83.94  Aligned_cols=69  Identities=17%  Similarity=0.425  Sum_probs=46.6

Q ss_pred             ceeccccCCccccCCCCCCCCcccccccccC-----cceeEEcCCCCcccHHHHHHHHhcC-----CCCCCCCCcccCc
Q 021794          178 CYSMLLKNSHPCVEGAMHHDCPVCCEYLFET-----RQDVIVLPCGHTIHKNCLKEMREHH-----QYACPICSKSVCD  246 (307)
Q Consensus       178 C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s-----~~~v~~LpCGH~fH~~Cl~~wl~~~-----~~~CPiCrks~~d  246 (307)
                      ++..-|.+-..-...+.+..|+||||.++..     +.-.++.+|+|.||..||..|.+..     ..+||+||..+..
T Consensus       153 ~i~~il~~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        153 DIIKILDKYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             chhHHHHHHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            3443333322333456688999999976542     1223556999999999999998742     2459999987753

>smart00504 Ubox Modified RING finger domain

Probab=98.24  E-value=1.2e-06  Score=64.03  Aligned_cols=45  Identities=20%  Similarity=0.473  Sum_probs=38.1

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ..||||++. ++   .+++++|||+|.++||.+|++. +.+||+|++.+.
T Consensus         2 ~~Cpi~~~~-~~---~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEV-MK---DPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCc-CC---CCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence            469999995 43   2577899999999999999986 678999998874

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.2e-06  Score=89.96  Aligned_cols=54  Identities=31%  Similarity=0.660  Sum_probs=43.8

Q ss_pred             CCCCCCCCcccccccccCcc-eeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          191 EGAMHHDCPVCCEYLFETRQ-DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       191 E~~~~~~CPIClE~lf~s~~-~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ....+..|+||+|.|..+.. .+..|||||.||..|+..|++. ..+||+||..+.
T Consensus       287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~  341 (543)
T KOG0802|consen  287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY  341 (543)
T ss_pred             hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence            34558899999998876422 2568999999999999999996 689999998443

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=2.5e-06  Score=76.62  Aligned_cols=48  Identities=25%  Similarity=0.742  Sum_probs=38.6

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      -..|||||+. +. .+.++..+|||.|+.+||+..++. ...||+|+|.+.
T Consensus       131 ~~~CPiCl~~-~s-ek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt  178 (187)
T KOG0320|consen  131 TYKCPICLDS-VS-EKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKIT  178 (187)
T ss_pred             ccCCCceecc-hh-hccccccccchhHHHHHHHHHHHh-CCCCCCcccccc
Confidence            3789999996 33 223355899999999999999985 589999998664

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=8.1e-06  Score=71.76  Aligned_cols=44  Identities=39%  Similarity=1.050  Sum_probs=37.4

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSK  242 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrk  242 (307)
                      .+..||||+++ |..+   ++|||||+|+..|+..++. ....||.||.
T Consensus        12 ~~~~C~iC~~~-~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEY-FREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHH-hhcC---ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence            46789999996 4432   8999999999999999887 5688999994

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=6.2e-06  Score=78.71  Aligned_cols=47  Identities=28%  Similarity=0.718  Sum_probs=39.1

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ...|.+|||.    +..+...||||.|+-.||.+|.+. ..-||+||..+..
T Consensus       239 ~~kC~LCLe~----~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~p  285 (293)
T KOG0317|consen  239 TRKCSLCLEN----RSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQP  285 (293)
T ss_pred             CCceEEEecC----CCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCC
Confidence            3579999995    345678999999999999999984 5679999987754

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.84  E-value=1.3e-05  Score=57.57  Aligned_cols=43  Identities=28%  Similarity=0.724  Sum_probs=33.6

Q ss_pred             CCcccccccccCcceeEEcCCC-----CcccHHHHHHHHhcC-CCCCCCCC
Q 021794          197 DCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICS  241 (307)
Q Consensus       197 ~CPIClE~lf~s~~~v~~LpCG-----H~fH~~Cl~~wl~~~-~~~CPiCr  241 (307)
                      .|-||++  +.+...+.++||.     |.+|..|+.+|+... +.+||+|+
T Consensus         1 ~CrIC~~--~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD--EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC--CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3889997  3445566788995     999999999999653 45799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>TIGR00599 rad18 DNA repair protein rad18

Probab=97.82  E-value=1.3e-05  Score=79.93  Aligned_cols=46  Identities=24%  Similarity=0.699  Sum_probs=38.7

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ...|+||++. +.   .+++++|||.||..||..|+.. ...||+|+..+.
T Consensus        26 ~l~C~IC~d~-~~---~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~   71 (397)
T TIGR00599        26 SLRCHICKDF-FD---VPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ   71 (397)
T ss_pred             ccCCCcCchh-hh---CccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence            5689999995 44   3457899999999999999975 568999998876

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.78  E-value=2.1e-05  Score=76.08  Aligned_cols=52  Identities=23%  Similarity=0.568  Sum_probs=39.8

Q ss_pred             CCCCcccccccccCccee-EEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDV-IVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v-~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||+...+.+..-. .+-+|||.|+..|++.++..+...||+|++++..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence            457999998655554422 2337999999999999776667789999987763

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=1.9e-05  Score=73.40  Aligned_cols=50  Identities=28%  Similarity=0.654  Sum_probs=38.7

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC--CCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~d  246 (307)
                      ....+|-||||.    .+++++..|||.|+--||-+||...  +..||+|+..+..
T Consensus        45 ~~~FdCNICLd~----akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   45 GGFFDCNICLDL----AKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             CCceeeeeeccc----cCCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence            446799999983    2345566699999999999999763  3458999987763

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=8.5e-06  Score=67.54  Aligned_cols=33  Identities=24%  Similarity=0.509  Sum_probs=29.0

Q ss_pred             eEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          212 VIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       212 v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      +...-|.|.||..||..||++ +..||++.+.+.
T Consensus        76 VaWG~CNHaFH~hCisrWlkt-r~vCPLdn~eW~  108 (114)
T KOG2930|consen   76 VAWGVCNHAFHFHCISRWLKT-RNVCPLDNKEWV  108 (114)
T ss_pred             EEeeecchHHHHHHHHHHHhh-cCcCCCcCccee
Confidence            456689999999999999995 689999999775

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.65  E-value=9.9e-06  Score=62.17  Aligned_cols=51  Identities=27%  Similarity=0.656  Sum_probs=23.4

Q ss_pred             CCCCcccccccccCc-ceeEEc---CCCCcccHHHHHHHHhc---CC-------CCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETR-QDVIVL---PCGHTIHKNCLKEMREH---HQ-------YACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~-~~v~~L---pCGH~fH~~Cl~~wl~~---~~-------~~CPiCrks~~  245 (307)
                      +.+|+||++++.+.. .+.++-   .|+..||..||.+||..   .+       -+||.|++++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            468999998766333 233332   69999999999999863   11       24999998774

>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]

Probab=97.58  E-value=1.4e-05  Score=65.46  Aligned_cols=51  Identities=27%  Similarity=0.763  Sum_probs=40.9

Q ss_pred             CCccccc---CceeEcCccCCeecCCccccccccCcCcCCcCCcccCcccccccccccccCCc
Q 021794           72 GCQHYRR---RCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVQQVCVNCGV  131 (307)
Q Consensus        72 GC~HY~R---~Cki~aPCC~~~y~CR~CHde~~~~~~~~~~~~H~l~R~~v~ev~~~C~nCg~  131 (307)
                      -|-||..   ...|+|-+|+++|+|-+||||.         ++|++.+....+....++-||+
T Consensus        14 RC~Hyht~~Diialkc~~C~kyYaCy~CHdel---------~~Hpf~p~~~~~~~~~~iiCGv   67 (105)
T COG4357          14 RCLHYHTPLDIIALKCKCCQKYYACYHCHDEL---------EDHPFEPWGLQEFNPKAIICGV   67 (105)
T ss_pred             eeeEecCccceEeeeechhhhhhhHHHHHhHH---------hcCCCccCChhhcCCccEEhhh
Confidence            5999998   7889999999999999999997         4699998776665444444443

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.54  E-value=0.00016  Score=55.52  Aligned_cols=48  Identities=23%  Similarity=0.524  Sum_probs=36.6

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..|||+.+- +.   +++++|+||+|-+.+|..|+.....+||+++..+..
T Consensus         4 ~f~CpIt~~l-M~---dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    4 EFLCPITGEL-MR---DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGB-TTTSSB--S---SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             ccCCcCcCcH-hh---CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            4579999984 44   477899999999999999998767899999988764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=8.2e-05  Score=75.78  Aligned_cols=49  Identities=24%  Similarity=0.626  Sum_probs=36.8

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC----CCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH----QYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~----~~~CPiCrks~~d  246 (307)
                      ++..|||||++ +.  -+ ..+.|||.|+..||.+||...    .-.||+|+..+..
T Consensus       185 t~~~CPICL~~-~~--~p-~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  185 TDMQCPICLEP-PS--VP-VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             cCCcCCcccCC-CC--cc-cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            37899999986 22  23 344599999999999977643    2459999987763

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=6.1e-05  Score=76.60  Aligned_cols=51  Identities=25%  Similarity=0.706  Sum_probs=38.5

Q ss_pred             CCCCcccccccccC-------------cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFET-------------RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s-------------~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ..+|+|||.++..-             ++..++.||.|.||..|+.+|+...+..||+||.++.
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            46899999765211             1124556999999999999999855567999998764

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.35  E-value=0.00013  Score=71.45  Aligned_cols=46  Identities=30%  Similarity=0.823  Sum_probs=39.6

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..|-||.|| |.   .+++.||||+|+.-||..+|. .+..||.|+.++..
T Consensus        24 LRC~IC~ey-f~---ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   24 LRCGICFEY-FN---IPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHhHHHHH-hc---CceeccccchHHHHHHHHHhc-cCCCCCceecccch
Confidence            479999996 54   467889999999999999998 47899999988863

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.00016  Score=71.82  Aligned_cols=47  Identities=28%  Similarity=0.644  Sum_probs=37.8

Q ss_pred             CCCCcccccccccCcceeEEcC-CCCcccHHHHHHHHhcCC--CCCCCCCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHHQ--YACPICSK  242 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~~--~~CPiCrk  242 (307)
                      ...|.|| ++++.....+..+. |||+||..|+.+|+...-  ..||+|+-
T Consensus         4 ~A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i   53 (465)
T KOG0827|consen    4 MAECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI   53 (465)
T ss_pred             cceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence            4579999 55787777776664 999999999999998632  47999993

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00027  Score=66.99  Aligned_cols=47  Identities=28%  Similarity=0.572  Sum_probs=37.3

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHH-HHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKE-MREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~-wl~~~~~~CPiCrks~~  245 (307)
                      +..|+||+|..    ..+...+|||.|+..||.. |.+.....||+||.-..
T Consensus       215 d~kC~lC~e~~----~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         215 DYKCFLCLEEP----EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccceeeeeccc----CCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            56799999853    3467889999999999999 87754334999997654

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.79  E-value=0.00053  Score=52.46  Aligned_cols=55  Identities=24%  Similarity=0.619  Sum_probs=26.6

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC--chhHHHHHhHHH
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC--DMSKVWEKYDRE  257 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~--dm~~~~~~lD~e  257 (307)
                      ..|++|.+.|..   ++.+..|.|.|+..|+.+-+.   +.||+|+.+..  |+. ..+.||..
T Consensus         8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~-~NrqLd~~   64 (65)
T PF14835_consen    8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQ-INRQLDSM   64 (65)
T ss_dssp             TS-SSS-S--SS----B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS-----HHHHHH
T ss_pred             cCCcHHHHHhcC---CceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHH-hhhhhhcc
Confidence            479999986443   566779999999999998764   45999998874  322 23445554

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.00094  Score=65.58  Aligned_cols=49  Identities=31%  Similarity=0.811  Sum_probs=39.7

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ....+|.|||..    .++.++|||-|. ++..|.+...- .+.+|||||..+..
T Consensus       288 ~~gkeCVIClse----~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSE----SRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecC----CcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence            445689999974    446899999998 99999999753 35789999998763

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.00042  Score=51.70  Aligned_cols=50  Identities=26%  Similarity=0.695  Sum_probs=38.4

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCch
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM  247 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~dm  247 (307)
                      ...+|.||+|.-    .+.++.-|||. ++-+|-...++..+-.||+||.++.+.
T Consensus         6 ~~dECTICye~p----vdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv   56 (62)
T KOG4172|consen    6 WSDECTICYEHP----VDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDV   56 (62)
T ss_pred             cccceeeeccCc----chHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence            347899999852    23455689997 889998886665678899999988764

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.00067  Score=71.84  Aligned_cols=47  Identities=28%  Similarity=0.710  Sum_probs=40.6

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..||+|-..    ..+.++..|||.||..|++..+...+.+||.|+.+|+.
T Consensus       644 LkCs~Cn~R----~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  644 LKCSVCNTR----WKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             eeCCCccCc----hhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            579999964    44577889999999999999988778899999999984

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.0007  Score=66.59  Aligned_cols=82  Identities=22%  Similarity=0.483  Sum_probs=53.3

Q ss_pred             CCCCCCcccccccccCc---ceeEE-cCCCCcccHHHHHHHHhcCC------CCCCCCCcccCc--hhHHHHHhHHHHhc
Q 021794          193 AMHHDCPVCCEYLFETR---QDVIV-LPCGHTIHKNCLKEMREHHQ------YACPICSKSVCD--MSKVWEKYDREIAA  260 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~---~~v~~-LpCGH~fH~~Cl~~wl~~~~------~~CPiCrks~~d--m~~~~~~lD~eia~  260 (307)
                      +.+..|-||||.+....   ....+ ++|.|.|+..|+..|.+..+      ..||+||.....  .+..|-.-.+  +.
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~--~k  236 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKE--EK  236 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecc--cc
Confidence            55789999999766533   11223 46999999999999985433      579999977653  2333532222  56


Q ss_pred             CCCChhhhcCceeEEc
Q 021794          261 TPMPEAYLNKKVWILC  276 (307)
Q Consensus       261 ~pmPeey~~~~~~IlC  276 (307)
                      ++++++|........|
T Consensus       237 ~~li~e~~~~~s~~~c  252 (344)
T KOG1039|consen  237 QKLIEEYEAEMSAKDC  252 (344)
T ss_pred             cccHHHHHHHhhccch
Confidence            6677777666444333

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.00056  Score=67.28  Aligned_cols=48  Identities=23%  Similarity=0.568  Sum_probs=40.4

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      +..|||||+-|..   ...+.-|+|.|+.+||..-+..++..||.||+.+.
T Consensus        43 ~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~   90 (381)
T KOG0311|consen   43 QVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV   90 (381)
T ss_pred             hhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence            4679999995444   34567899999999999988878889999999887

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.00072  Score=64.64  Aligned_cols=52  Identities=23%  Similarity=0.553  Sum_probs=40.9

Q ss_pred             CCCCCcccccccccCc------ceeEEcCCCCcccHHHHHHHHhc-CCCCCCCCCcccC
Q 021794          194 MHHDCPVCCEYLFETR------QDVIVLPCGHTIHKNCLKEMREH-HQYACPICSKSVC  245 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~------~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  245 (307)
                      .++.|+||...+..+.      +..-.|.|+|.||.-||.-|--. ...+||.|++.+.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            3678999988766654      24567899999999999999543 4578999997665

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.47  E-value=0.0021  Score=46.52  Aligned_cols=47  Identities=34%  Similarity=0.699  Sum_probs=25.4

Q ss_pred             CcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCccc
Q 021794          198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV  244 (307)
Q Consensus       198 CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~  244 (307)
                      ||+|.|.|..++.....=+||+.+++.|+...+.....+||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            79999988554444334468999999999999875678999999864

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=96.42  E-value=0.0018  Score=62.57  Aligned_cols=46  Identities=26%  Similarity=0.597  Sum_probs=38.0

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      -..|-||-+++.    .+...+|||+|+.-||..+|. .+..||+||.+..
T Consensus        25 ~lrC~IC~~~i~----ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~   70 (391)
T COG5432          25 MLRCRICDCRIS----IPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPC   70 (391)
T ss_pred             HHHhhhhhheee----cceecccccchhHHHHHHHhc-CCCCCccccccHH
Confidence            357999998632    356779999999999999997 4799999997664

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.27  E-value=0.00079  Score=67.17  Aligned_cols=58  Identities=34%  Similarity=0.713  Sum_probs=47.9

Q ss_pred             CccccCCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-CCCCCCCCCccc
Q 021794          186 SHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPICSKSV  244 (307)
Q Consensus       186 ~H~CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~  244 (307)
                      .|.|++ +++..|-.|.|.+-...+....|||.|.||..|+.++|.. ...+||-||+-.
T Consensus       357 a~~~~~-e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr  415 (518)
T KOG1941|consen  357 AHECVE-ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR  415 (518)
T ss_pred             HHHHHH-HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            477886 6789999999987777777788999999999999998864 346799999433

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.22  E-value=0.0037  Score=46.42  Aligned_cols=44  Identities=27%  Similarity=0.619  Sum_probs=29.4

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-CCCCCCC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPI  239 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPi  239 (307)
                      .....|||-+.. +.  ++++...|||+|-++.|.+|++. ....||+
T Consensus         9 ~~~~~CPiT~~~-~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQP-FE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB--S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCCh-hh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            345789999986 43  37788899999999999999943 4567998

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.00  E-value=0.0047  Score=69.69  Aligned_cols=74  Identities=27%  Similarity=0.577  Sum_probs=54.9

Q ss_pred             cCCcceeeccCCCcceeccccCCccccCCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc---------CC
Q 021794          164 GGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---------HQ  234 (307)
Q Consensus       164 G~~~~ffHC~~C~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---------~~  234 (307)
                      ||.+|--||.-|-.|-.-..       ....++-|.||+-. -.+..+...|.|||.||.+|....|..         +-
T Consensus      3462 GGvkNEE~CLPCl~Cdks~t-------kQD~DDmCmICFTE-~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~F 3533 (3738)
T KOG1428|consen 3462 GGVKNEEHCLPCLHCDKSAT-------KQDADDMCMICFTE-ALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGF 3533 (3738)
T ss_pred             cCccchhhcccccccChhhh-------hcccCceEEEEehh-hhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEee
Confidence            56688889998888754322       12347789999864 455667889999999999999876653         12


Q ss_pred             CCCCCCCcccC
Q 021794          235 YACPICSKSVC  245 (307)
Q Consensus       235 ~~CPiCrks~~  245 (307)
                      ..||+|...+.
T Consensus      3534 isCPiC~n~In 3544 (3738)
T KOG1428|consen 3534 ISCPICKNKIN 3544 (3738)
T ss_pred             eecccccchhh
Confidence            46999998775

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.92  E-value=0.0038  Score=68.03  Aligned_cols=53  Identities=21%  Similarity=0.570  Sum_probs=37.6

Q ss_pred             CCCCCCcccccccc--cCccee-EEcCCCCcccHHHHHHHHhc-CCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLF--ETRQDV-IVLPCGHTIHKNCLKEMREH-HQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf--~s~~~v-~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  245 (307)
                      +...+||||..-|.  +..-|. +-.-|.|-||..|+-+|+.+ ++.+||+||.++.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            45789999986443  211122 22348899999999999976 4678999997664

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.0081  Score=57.60  Aligned_cols=53  Identities=26%  Similarity=0.676  Sum_probs=41.5

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHh-cCCCCCCCCCcccCchh
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE-HHQYACPICSKSVCDMS  248 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~-~~~~~CPiCrks~~dm~  248 (307)
                      +....||+|.++   +.-|.+..+|||.|+--|+..-+. ..+++||.|+.+...+.
T Consensus       237 t~~~~C~~Cg~~---PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  237 TSDTECPVCGEP---PTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ  290 (298)
T ss_pred             cCCceeeccCCC---CCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence            446789999986   445667789999999999999443 23589999998887553

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.65  E-value=0.0035  Score=62.86  Aligned_cols=54  Identities=30%  Similarity=0.765  Sum_probs=43.5

Q ss_pred             cccCCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-CCCCCCCCCcccC
Q 021794          188 PCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPICSKSVC  245 (307)
Q Consensus       188 ~CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  245 (307)
                      -|.-+++=.-|-||-|    +.+++.+=||||.++..|+..|-.. +...||.||-.+.
T Consensus       362 YceMgsTFeLCKICae----ndKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  362 YCEMGSTFELCKICAE----NDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHccchHHHHHHhhc----cCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            3556677788999998    3567888899999999999999744 3678999996654

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.54  E-value=0.0046  Score=66.26  Aligned_cols=49  Identities=14%  Similarity=0.365  Sum_probs=39.7

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      +..||+|+.. +.........+|+|.||.+||..|-.. -.+||+||+.|.
T Consensus       123 ~~~CP~Ci~s-~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  123 ENQCPNCLKS-CNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhHHHHH-HHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhh
Confidence            5689999975 444444456799999999999999874 589999998887

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.45  E-value=0.0088  Score=42.61  Aligned_cols=41  Identities=29%  Similarity=0.752  Sum_probs=26.7

Q ss_pred             CcccccccccCcceeEEcCCC-----CcccHHHHHHHHhc-CCCCCCCC
Q 021794          198 CPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREH-HQYACPIC  240 (307)
Q Consensus       198 CPIClE~lf~s~~~v~~LpCG-----H~fH~~Cl~~wl~~-~~~~CPiC  240 (307)
                      |-||++...++  +..+.||+     -..|.+||.+|+.. .+.+|++|
T Consensus         1 CrIC~~~~~~~--~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEED--EPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSS--S-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCC--CceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            56888753332  35677885     57899999999974 45679987

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=0.0082  Score=58.18  Aligned_cols=49  Identities=18%  Similarity=0.419  Sum_probs=39.2

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      .+..+|+||+...-    -++.|+|+|.|+..||+--.+....+||+||.++.
T Consensus         5 ~~~~eC~IC~nt~n----~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid   53 (324)
T KOG0824|consen    5 TKKKECLICYNTGN----CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID   53 (324)
T ss_pred             ccCCcceeeeccCC----cCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence            45678999997522    24789999999999999855545677999999886

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.63  E-value=0.026  Score=54.49  Aligned_cols=49  Identities=20%  Similarity=0.522  Sum_probs=40.1

Q ss_pred             CCcccccccccCcceeEE-cCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          197 DCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       197 ~CPIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      .||+|.-+.+.+..-... =+|||.++..|+...+..+.+.||.|.+.+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            599998777766543322 2999999999999999888999999998775

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=0.034  Score=52.46  Aligned_cols=49  Identities=31%  Similarity=0.756  Sum_probs=38.7

Q ss_pred             CCCcccccccccCc---ceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          196 HDCPVCCEYLFETR---QDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       196 ~~CPIClE~lf~s~---~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ..|-||-++ |.+.   ..+++|.|||+++..|+.+.+......||.||.+..
T Consensus         4 ~~c~~c~~~-~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~   55 (296)
T KOG4185|consen    4 PECEICNED-YSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTE   55 (296)
T ss_pred             CceeecCcc-ccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCccc
Confidence            457788776 4443   335788999999999999999877777999999854

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.49  E-value=0.018  Score=45.68  Aligned_cols=33  Identities=36%  Similarity=0.850  Sum_probs=27.4

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHH
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLK  227 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~  227 (307)
                      .....|+||...|..  ....+.||||.+|..|++
T Consensus        76 ~~~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence            446789999998776  467888999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.42  E-value=0.048  Score=54.97  Aligned_cols=50  Identities=24%  Similarity=0.744  Sum_probs=38.2

Q ss_pred             CCCcccccccccCcce-eEEcCCCCcccHHHHHHHHhc-CCCCCCCCCcccC
Q 021794          196 HDCPVCCEYLFETRQD-VIVLPCGHTIHKNCLKEMREH-HQYACPICSKSVC  245 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~-v~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  245 (307)
                      ..||||++.+-.+++- ++.|.|||.|=.+|++.||-. ....||.|.....
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT   56 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence            5799999877665544 466899999999999999942 2245999985443

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.98  E-value=0.023  Score=42.31  Aligned_cols=33  Identities=39%  Similarity=0.785  Sum_probs=26.6

Q ss_pred             eeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          211 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       211 ~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .-.+|||||.+...|+.-+--   .-||+|.+.+..
T Consensus        19 ~~~~~pCgH~I~~~~f~~~rY---ngCPfC~~~~~~   51 (55)
T PF14447_consen   19 KGTVLPCGHLICDNCFPGERY---NGCPFCGTPFEF   51 (55)
T ss_pred             ccccccccceeeccccChhhc---cCCCCCCCcccC
Confidence            456899999999999987632   359999998864

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.88  E-value=0.035  Score=50.60  Aligned_cols=31  Identities=29%  Similarity=0.808  Sum_probs=25.2

Q ss_pred             cCCCCcccHHHHHHHHhc-----CC-----CCCCCCCcccC
Q 021794          215 LPCGHTIHKNCLKEMREH-----HQ-----YACPICSKSVC  245 (307)
Q Consensus       215 LpCGH~fH~~Cl~~wl~~-----~~-----~~CPiCrks~~  245 (307)
                      ..||-.||+-|+.+||..     .+     -.||.|++++.
T Consensus       188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia  228 (234)
T KOG3268|consen  188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA  228 (234)
T ss_pred             cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence            579999999999999963     11     24999999885

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=93.78  E-value=0.023  Score=56.14  Aligned_cols=57  Identities=26%  Similarity=0.604  Sum_probs=44.7

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHH
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVW  251 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~  251 (307)
                      ++-||.|+|+|.-+.+....-|||-.+++-|+....+.-+-+||-||+...+-...|
T Consensus        14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~   70 (480)
T COG5175          14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRY   70 (480)
T ss_pred             cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeE
Confidence            455999999987766666667899999999998876655678999999887644433

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=93.60  E-value=0.042  Score=54.80  Aligned_cols=49  Identities=29%  Similarity=0.690  Sum_probs=39.6

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .+..||+|..-+-   +++....|||.|+..|+..|+.. +..||.|+..+..
T Consensus        20 ~~l~C~~C~~vl~---~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~   68 (391)
T KOG0297|consen   20 ENLLCPICMSVLR---DPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQ   68 (391)
T ss_pred             ccccCcccccccc---CCCCCCCCCCcccccccchhhcc-CcCCcccccccch
Confidence            3578999997533   24444789999999999999986 7899999987764

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.60  E-value=0.07  Score=53.68  Aligned_cols=49  Identities=29%  Similarity=0.823  Sum_probs=39.4

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..+..|.||+.-++    +++++||||+|+..||..-+. ...-||+||-.+..
T Consensus        82 ~sef~c~vc~~~l~----~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALY----PPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcC----CCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence            45789999998544    356779999999999999776 35779999988874

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=93.31  E-value=0.027  Score=54.81  Aligned_cols=51  Identities=24%  Similarity=0.580  Sum_probs=40.3

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc----------------------CCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH----------------------HQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~----------------------~~~~CPiCrks~~d  246 (307)
                      .+.|.|||= =|.+.....+.+|-|+||..||..+|..                      ..-.||+||-.+.+
T Consensus       115 ~gqCvICLy-gfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  115 NGQCVICLY-GFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCceEEEEE-eecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            679999994 4777777888999999999999887741                      12349999977763

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=93.29  E-value=0.041  Score=47.75  Aligned_cols=35  Identities=20%  Similarity=0.514  Sum_probs=30.1

Q ss_pred             CCCCcccccccccCcceeEEcCCC------CcccHHHHHHHH
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCG------HTIHKNCLKEMR  230 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCG------H~fH~~Cl~~wl  230 (307)
                      ..+|.||++.+-. .+.++.++||      |.||.+|++.|-
T Consensus        26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence            4689999998777 5678889997      889999999993

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.84  E-value=0.064  Score=53.08  Aligned_cols=47  Identities=26%  Similarity=0.639  Sum_probs=35.1

Q ss_pred             CCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       191 E~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      +.+...+|.||++.    ....+.+||||.-+  |..-...  ..+||+||..+.
T Consensus       301 ~~~~p~lcVVcl~e----~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~  347 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDE----PKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR  347 (355)
T ss_pred             ccCCCCceEEecCC----ccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence            45678899999984    33478999999966  6655533  356999998764

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.65  E-value=0.13  Score=51.83  Aligned_cols=46  Identities=30%  Similarity=0.551  Sum_probs=36.3

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-------CCCCCCCCC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPICS  241 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-------~~~~CPiCr  241 (307)
                      -..|-||++. +....-...|||+|+|++.|+..|...       ...+||-+.
T Consensus       184 lf~C~ICf~e-~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  184 LFDCCICFEE-QMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK  236 (445)
T ss_pred             cccceeeehh-hcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence            5789999985 555567788999999999999998742       346698665

>PF04641 Rtf2: Rtf2 RING-finger

Probab=91.77  E-value=0.16  Score=47.72  Aligned_cols=51  Identities=25%  Similarity=0.640  Sum_probs=39.5

Q ss_pred             CCCCCCCcccccccccCcceeEE-cCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          192 GAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       192 ~~~~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ......|||....| +.....+. .||||+|-..+|.+.-  ....||+|.+++.
T Consensus       110 ~~~~~~CPvt~~~~-~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  110 SEGRFICPVTGKEF-NGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFT  161 (260)
T ss_pred             CCceeECCCCCccc-CCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccc
Confidence            34567899999865 44445555 4999999999999983  2467999999986

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.73  E-value=0.028  Score=54.48  Aligned_cols=55  Identities=27%  Similarity=0.690  Sum_probs=37.7

Q ss_pred             cCCccccCCCC---CCCCcccccccccCcceeEEcCCCCcc-cHHHHHHHHhcCCCCCCCCCcccCch
Q 021794          184 KNSHPCVEGAM---HHDCPVCCEYLFETRQDVIVLPCGHTI-HKNCLKEMREHHQYACPICSKSVCDM  247 (307)
Q Consensus       184 ~~~H~CiE~~~---~~~CPIClE~lf~s~~~v~~LpCGH~f-H~~Cl~~wl~~~~~~CPiCrks~~dm  247 (307)
                      +++|.+-....   +..|.||++    .+.+-++|+|||.. +.+|-+.+     ..|||||+-+...
T Consensus       286 k~~~g~~~~~s~~~~~LC~ICmD----aP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi~rv  344 (350)
T KOG4275|consen  286 KGNDGEQHSRSLATRRLCAICMD----APRDCVFLECGHMVTCTKCGKRM-----NECPICRQYIVRV  344 (350)
T ss_pred             hcccccccccchhHHHHHHHHhc----CCcceEEeecCcEEeehhhcccc-----ccCchHHHHHHHH
Confidence            34454443333   789999998    45678999999974 55555444     2699999866543

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=91.54  E-value=0.22  Score=48.32  Aligned_cols=62  Identities=24%  Similarity=0.566  Sum_probs=45.3

Q ss_pred             CCCCcccccccccCcceeEEcCC--CCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHhcCCCChhh
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPC--GHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAY  267 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpC--GH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~lD~eia~~pmPeey  267 (307)
                      =.+||||.++|..     -++.|  ||..+..|-.+.    ...||.||.++++...  +.++..+++...|=.|
T Consensus        48 lleCPvC~~~l~~-----Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~~R~--~amEkV~e~~~vpC~~  111 (299)
T KOG3002|consen   48 LLDCPVCFNPLSP-----PIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGNIRC--RAMEKVAEAVLVPCKN  111 (299)
T ss_pred             hccCchhhccCcc-----cceecCCCcEehhhhhhhh----cccCCccccccccHHH--HHHHHHHHhceecccc
Confidence            3589999997543     24556  899999998864    3679999999996532  4466777777666444

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.37  E-value=0.15  Score=51.08  Aligned_cols=48  Identities=29%  Similarity=0.647  Sum_probs=40.0

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCC--CCCCCCCccc
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQ--YACPICSKSV  244 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~--~~CPiCrks~  244 (307)
                      ..|||=.|- -+...|++.|.|||++-++-++.+.+.+.  ++||.|-...
T Consensus       335 F~CPVlKeq-tsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  335 FICPVLKEQ-TSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             eecccchhh-ccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            479998873 55567889999999999999999988766  8899997543

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.04  E-value=0.31  Score=46.08  Aligned_cols=52  Identities=31%  Similarity=0.662  Sum_probs=40.7

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-------CCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-------~~~~CPiCrks~~d  246 (307)
                      ....+|..|.-.|- ++ +.+-|.|=|.||-.|+++|-..       ..|+||-|+..+..
T Consensus        48 DY~pNC~LC~t~La-~g-dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP  106 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLA-SG-DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP  106 (299)
T ss_pred             CCCCCCceeCCccc-cC-cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence            34679999987643 34 4567889999999999999753       35899999998873

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.67  E-value=0.17  Score=49.15  Aligned_cols=49  Identities=22%  Similarity=0.610  Sum_probs=39.4

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .....|-||.+++.    .+++..|||+|+..|...-++. ...|++|.+.+-.
T Consensus       239 ~~Pf~c~icr~~f~----~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g  287 (313)
T KOG1813|consen  239 LLPFKCFICRKYFY----RPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG  287 (313)
T ss_pred             cCCccccccccccc----cchhhcCCceeehhhhcccccc-CCcceeccccccc
Confidence            34567999999743    3678899999999999887763 4789999998864

>TIGR00100 hypA hydrogenase nickel insertion protein HypA

Probab=90.43  E-value=0.19  Score=42.01  Aligned_cols=35  Identities=23%  Similarity=0.601  Sum_probs=28.1

Q ss_pred             ceeEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021794          271 KVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  307 (307)
Q Consensus       271 ~~~IlCnDC~~~s~~~fH~lg~kC~~C~SYNT~~~~~  307 (307)
                      .+...|++|+.......+  ...||.|||+++++++|
T Consensus        68 p~~~~C~~Cg~~~~~~~~--~~~CP~Cgs~~~~i~~G  102 (115)
T TIGR00100        68 PVECECEDCSEEVSPEID--LYRCPKCHGIMLQVRAG  102 (115)
T ss_pred             CcEEEcccCCCEEecCCc--CccCcCCcCCCcEEecC
Confidence            567899999987766432  35799999999998876

In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional

Probab=89.77  E-value=0.24  Score=42.52  Aligned_cols=37  Identities=27%  Similarity=0.734  Sum_probs=27.5

Q ss_pred             ceeEEcCCCCCCcccc-------------cee------eeccCCCCCCccccccCC
Q 021794          271 KVWILCNDCGKTSNVQ-------------FHV------LAQKCPNCKSYNTRLTRG  307 (307)
Q Consensus       271 ~~~IlCnDC~~~s~~~-------------fH~------lg~kC~~C~SYNT~~~~~  307 (307)
                      .....|.+|+......             +|+      ...+|+.|||++.++++|
T Consensus        68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~~G  123 (135)
T PRK03824         68 EAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRDFEIVKG  123 (135)
T ss_pred             ceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCCcEEecC
Confidence            3678999999766443             222      236899999999998775

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.62  E-value=0.34  Score=48.32  Aligned_cols=66  Identities=23%  Similarity=0.450  Sum_probs=46.2

Q ss_pred             CcceeccccCCccccCCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-CCCCCCCCCcccC
Q 021794          176 RCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPICSKSVC  245 (307)
Q Consensus       176 ~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  245 (307)
                      +.|...+|.++.+=..+..+..|.||.+.    ..-+.++||||.++-.|......- .+-.||+||..+.
T Consensus        42 nlsaEPnlttsSaddtDEen~~C~ICA~~----~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          42 NLSAEPNLTTSSADDTDEENMNCQICAGS----TTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             ccccCCccccccccccccccceeEEecCC----ceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            55666565554443445567899999984    335678999999999998775321 2456999997765

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=89.36  E-value=0.22  Score=46.29  Aligned_cols=59  Identities=20%  Similarity=0.459  Sum_probs=41.8

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHH
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREI  258 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~lD~ei  258 (307)
                      ...|-||.++ +.|   +++..|||.|+..|+-.-.+. ...|-+|.+..--.-..-..++..+
T Consensus       196 PF~C~iCKkd-y~s---pvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G~f~V~~d~~kmL  254 (259)
T COG5152         196 PFLCGICKKD-YES---PVVTECGHSFCSLCAIRKYQK-GDECGVCGKATYGRFWVVSDLQKML  254 (259)
T ss_pred             ceeehhchhh-ccc---hhhhhcchhHHHHHHHHHhcc-CCcceecchhhccceeHHhhHHHHH
Confidence            4589999987 553   567789999999998875553 4789999987764322333444443

>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional

Probab=89.26  E-value=0.27  Score=41.29  Aligned_cols=36  Identities=31%  Similarity=0.624  Sum_probs=28.3

Q ss_pred             CceeEEcCCCCCCcccc-ceeeeccCCCCCCccccccCC
Q 021794          270 KKVWILCNDCGKTSNVQ-FHVLAQKCPNCKSYNTRLTRG  307 (307)
Q Consensus       270 ~~~~IlCnDC~~~s~~~-fH~lg~kC~~C~SYNT~~~~~  307 (307)
                      ..+...|++|+..+... +++  .+||.|||++...++|
T Consensus        68 vp~~~~C~~Cg~~~~~~~~~~--~~CP~Cgs~~~~i~~G  104 (117)
T PRK00564         68 EKVELECKDCSHVFKPNALDY--GVCEKCHSKNVIITQG  104 (117)
T ss_pred             cCCEEEhhhCCCccccCCccC--CcCcCCCCCceEEecC
Confidence            35678999999877664 333  4799999999998875

>PHA02862 5L protein; Provisional

Probab=89.22  E-value=0.28  Score=43.38  Aligned_cols=46  Identities=17%  Similarity=0.471  Sum_probs=33.6

Q ss_pred             CCCCcccccccccCcceeEEcCCC-----CcccHHHHHHHHhcC-CCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCG-----H~fH~~Cl~~wl~~~-~~~CPiCrks~~  245 (307)
                      ...|=||.+. -  .+.  .-||.     -..|++|+.+|++.. +..||+|+.++.
T Consensus         2 ~diCWIC~~~-~--~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          2 SDICWICNDV-C--DER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CCEEEEecCc-C--CCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            4678899874 1  122  35774     569999999999763 456999998775

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=88.39  E-value=0.48  Score=42.33  Aligned_cols=33  Identities=33%  Similarity=0.893  Sum_probs=23.6

Q ss_pred             CCCCcccccccccCcceeEEcCCC-C------------cccHHHHHHHHh
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCG-H------------TIHKNCLKEMRE  231 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCG-H------------~fH~~Cl~~wl~  231 (307)
                      +..||||||.    +-..++|-|. |            .-|..||+++-+
T Consensus         2 d~~CpICme~----PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEH----PHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccC----CCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            4679999995    2345667673 2            368999999864

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=88.34  E-value=0.2  Score=52.24  Aligned_cols=54  Identities=26%  Similarity=0.571  Sum_probs=43.3

Q ss_pred             cccCCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc----CCCCCCCCCcccC
Q 021794          188 PCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH----HQYACPICSKSVC  245 (307)
Q Consensus       188 ~CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~----~~~~CPiCrks~~  245 (307)
                      .=.|+..+..|-+|-+.    .+++..-.|.|.|++-|+.+|+..    .+.+||+|...+.
T Consensus       529 ~~~enk~~~~C~lc~d~----aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  529 LPDENKGEVECGLCHDP----AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             CCccccCceeecccCCh----hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            34577888999999985    235677889999999999998753    4578999998775

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=88.31  E-value=0.46  Score=42.49  Aligned_cols=47  Identities=28%  Similarity=0.617  Sum_probs=33.8

Q ss_pred             CCCCCcccccccccCcceeEEcCCC--C---cccHHHHHHHHhcC-CCCCCCCCcccC
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCG--H---TIHKNCLKEMREHH-QYACPICSKSVC  245 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCG--H---~fH~~Cl~~wl~~~-~~~CPiCrks~~  245 (307)
                      ++..|-||.+.-   +  ...-||.  .   ..|++|++.|+... ..+||+|+..+.
T Consensus         7 ~~~~CRIC~~~~---~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          7 MDKCCWICKDEY---D--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCeeEecCCCC---C--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            466899998751   1  1234765  3   56999999999763 467999997764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.22  E-value=0.35  Score=52.71  Aligned_cols=43  Identities=28%  Similarity=0.710  Sum_probs=32.2

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ..|..|--.|-   -|.+...|||.||++|+.    .....||-|+-...
T Consensus       841 skCs~C~~~Ld---lP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~~  883 (933)
T KOG2114|consen  841 SKCSACEGTLD---LPFVHFLCGHSYHQHCLE----DKEDKCPKCLPELR  883 (933)
T ss_pred             eeecccCCccc---cceeeeecccHHHHHhhc----cCcccCCccchhhh
Confidence            36888875433   366777899999999999    24578999998443

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=88.09  E-value=0.24  Score=37.44  Aligned_cols=32  Identities=38%  Similarity=0.949  Sum_probs=22.4

Q ss_pred             cccccccCCcc-cceeecCccccccCCCCCCccccCCCCc
Q 021794          122 VQQVCVNCGVC-MGEYFCESCKLFDDDTSKKQYHCDGCGI  160 (307)
Q Consensus       122 v~~~C~nCg~~-f~~YfC~~Ckl~ddd~~k~~yHC~~Cgi  160 (307)
                      +...|.|||.. ..  -|.+|+-+.     ..|.|++||+
T Consensus        24 ~~F~CPnCG~~~I~--RC~~CRk~~-----~~Y~CP~CGF   56 (59)
T PRK14890         24 VKFLCPNCGEVIIY--RCEKCRKQS-----NPYTCPKCGF   56 (59)
T ss_pred             CEeeCCCCCCeeEe--echhHHhcC-----CceECCCCCC
Confidence            56778888875 43  388887664     4688888885

>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional

Probab=88.06  E-value=0.35  Score=40.39  Aligned_cols=35  Identities=26%  Similarity=0.685  Sum_probs=27.2

Q ss_pred             ceeEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021794          271 KVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  307 (307)
Q Consensus       271 ~~~IlCnDC~~~s~~~fH~lg~kC~~C~SYNT~~~~~  307 (307)
                      .....|++|+........  ...||.|||++...++|
T Consensus        68 p~~~~C~~Cg~~~~~~~~--~~~CP~Cgs~~~~i~~G  102 (113)
T PRK12380         68 PAQAWCWDCSQVVEIHQH--DAQCPHCHGERLRVDTG  102 (113)
T ss_pred             CcEEEcccCCCEEecCCc--CccCcCCCCCCcEEccC
Confidence            467899999987766422  23599999999998876

>PRK03681 hypA hydrogenase nickel incorporation protein; Validated

Probab=87.70  E-value=0.39  Score=40.17  Aligned_cols=36  Identities=17%  Similarity=0.480  Sum_probs=27.5

Q ss_pred             ceeEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021794          271 KVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  307 (307)
Q Consensus       271 ~~~IlCnDC~~~s~~~fH~lg~kC~~C~SYNT~~~~~  307 (307)
                      .....|++|+......-+. ...||.|||++++.++|
T Consensus        68 p~~~~C~~Cg~~~~~~~~~-~~~CP~Cgs~~~~i~~G  103 (114)
T PRK03681         68 EAECWCETCQQYVTLLTQR-VRRCPQCHGDMLRIVAD  103 (114)
T ss_pred             CcEEEcccCCCeeecCCcc-CCcCcCcCCCCcEEccC
Confidence            4678999999876654322 14699999999998876

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.69  E-value=0.57  Score=44.83  Aligned_cols=54  Identities=26%  Similarity=0.507  Sum_probs=43.6

Q ss_pred             CCCCCCCcccccccccCcceeEEc-CCCCcccHHHHHHHHhcCCCCCCCCCcccCch
Q 021794          192 GAMHHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVCDM  247 (307)
Q Consensus       192 ~~~~~~CPIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm  247 (307)
                      .+....||||.+.|.. ..+..+| ||||++..+|..+++.. .-.||+|.+++.+.
T Consensus       218 ~s~ryiCpvtrd~LtN-t~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  218 ASKRYICPVTRDTLTN-TTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDR  272 (303)
T ss_pred             hccceecccchhhhcC-ccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCccc
Confidence            3456789999997554 5556666 99999999999999974 57899999998863

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=87.31  E-value=0.4  Score=33.59  Aligned_cols=42  Identities=29%  Similarity=0.698  Sum_probs=20.1

Q ss_pred             CcccccccccCcceeEEcCCCCcccHHHHHHHHhcCC-CCCCCC
Q 021794          198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQ-YACPIC  240 (307)
Q Consensus       198 CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~-~~CPiC  240 (307)
                      |.+|.+ +.+-+..-....|+=.+|..|+..|+++.+ .+||.|
T Consensus         1 C~~C~~-iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKE-IVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-S-B-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             Ccccch-hHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            556666 333222111224778899999999987643 369987

; PDB: 3NW0_A 2CT0_A.

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.17  E-value=0.26  Score=35.90  Aligned_cols=32  Identities=34%  Similarity=0.760  Sum_probs=22.9

Q ss_pred             EcCCC-CcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          214 VLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       214 ~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .+.|. |+++..|+..+++. +..||||.+++..
T Consensus        15 Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt   47 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT   47 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred             eeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence            56786 99999999999985 6899999988753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=87.00  E-value=0.12  Score=40.33  Aligned_cols=65  Identities=26%  Similarity=0.542  Sum_probs=37.8

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHhcCCCChhhhcCceeEE
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWIL  275 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~lD~eia~~pmPeey~~~~~~Il  275 (307)
                      ..||.|...|-...        ||+.+..|-..+...  ..||-|..++..+.                   +-..+..+
T Consensus         2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~~~~~--a~CPdC~~~Le~Lk-------------------ACGAvdYF   52 (70)
T PF07191_consen    2 NTCPKCQQELEWQG--------GHYHCEACQKDYKKE--AFCPDCGQPLEVLK-------------------ACGAVDYF   52 (70)
T ss_dssp             -B-SSS-SBEEEET--------TEEEETTT--EEEEE--EE-TTT-SB-EEEE-------------------ETTEEEEE
T ss_pred             CcCCCCCCccEEeC--------CEEECccccccceec--ccCCCcccHHHHHH-------------------Hhccccee
Confidence            47999998643321        888999998887653  67999998876432                   12247899


Q ss_pred             cCCCCC---Ccccccee
Q 021794          276 CNDCGK---TSNVQFHV  289 (307)
Q Consensus       276 CnDC~~---~s~~~fH~  289 (307)
                      ||.|.+   ++.|.|.+
T Consensus        53 C~~c~gLiSKkrV~f~~   69 (70)
T PF07191_consen   53 CNHCHGLISKKRVRFEF   69 (70)
T ss_dssp             -TTTT-EE-TTTSEEEE
T ss_pred             eccCCceeecceEEEEe
Confidence            999985   55665543

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=86.68  E-value=0.18  Score=49.44  Aligned_cols=49  Identities=29%  Similarity=0.667  Sum_probs=39.6

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ..+..|++|..+|-+   +..+.-|=|+|++.||.++|.. ...||.|.-.+.
T Consensus        13 n~~itC~LC~GYliD---ATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih   61 (331)
T KOG2660|consen   13 NPHITCRLCGGYLID---ATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIH   61 (331)
T ss_pred             ccceehhhccceeec---chhHHHHHHHHHHHHHHHHHHH-hccCCccceecc
Confidence            345689999998765   3345679999999999999986 688999997665

>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation

Probab=86.01  E-value=0.27  Score=40.92  Aligned_cols=35  Identities=26%  Similarity=0.552  Sum_probs=24.8

Q ss_pred             ceeEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021794          271 KVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  307 (307)
Q Consensus       271 ~~~IlCnDC~~~s~~~fH~lg~kC~~C~SYNT~~~~~  307 (307)
                      .....|++|+..+....+.  ..||.|+|++.++++|
T Consensus        68 p~~~~C~~Cg~~~~~~~~~--~~CP~Cgs~~~~i~~G  102 (113)
T PF01155_consen   68 PARARCRDCGHEFEPDEFD--FSCPRCGSPDVEIISG  102 (113)
T ss_dssp             --EEEETTTS-EEECHHCC--HH-SSSSSS-EEEEES
T ss_pred             CCcEECCCCCCEEecCCCC--CCCcCCcCCCcEEccC
Confidence            4678999999998776553  6799999999888765

The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.65  E-value=0.33  Score=51.62  Aligned_cols=43  Identities=28%  Similarity=0.718  Sum_probs=35.9

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSK  242 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrk  242 (307)
                      ..|+||+..++.++..++.|-|||++++.|++....   .+|| |..
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~   54 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKR   54 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCc
Confidence            479999887888888889999999999999998743   5788 553

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.68  E-value=0.35  Score=45.52  Aligned_cols=37  Identities=30%  Similarity=0.737  Sum_probs=28.0

Q ss_pred             ccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          206 FETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       206 f~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      +.+..+..++.|+|.|+..|...-..   ..||+|++++.
T Consensus        12 ~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir   48 (233)
T KOG4739|consen   12 FPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIR   48 (233)
T ss_pred             cCCCCceeeeechhhhhhhhcccCCc---cccccccceee
Confidence            44444556779999999999886432   38999999965

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=83.41  E-value=0.76  Score=49.82  Aligned_cols=42  Identities=24%  Similarity=0.521  Sum_probs=30.5

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPI  239 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPi  239 (307)
                      ...|.||--.+.  +....-+.|||.+|..|+.+|++.+ ..||.
T Consensus      1028 ~~~C~~C~l~V~--gss~~Cg~C~Hv~H~sc~~eWf~~g-d~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVR--GSSNFCGTCGHVGHTSCMMEWFRTG-DVCPS 1069 (1081)
T ss_pred             eeeeeeEeeEee--ccchhhccccccccHHHHHHHHhcC-CcCCC
Confidence            445888874333  3344567899999999999999864 67873

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=82.96  E-value=0.42  Score=45.60  Aligned_cols=51  Identities=25%  Similarity=0.621  Sum_probs=41.1

Q ss_pred             CCCCcccccccccCcceeEEc-C-CCCcccHHHHHHHHhcCCCCCC--CCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVL-P-CGHTIHKNCLKEMREHHQYACP--ICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~L-p-CGH~fH~~Cl~~wl~~~~~~CP--iCrks~~  245 (307)
                      +..||||..+.+.+++-..++ | |=|.++..|.+..++.+.-.||  -|.+-+.
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR   64 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR   64 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence            558999998888877543333 6 9999999999999988888899  8886554

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=82.69  E-value=0.83  Score=44.87  Aligned_cols=44  Identities=30%  Similarity=0.763  Sum_probs=34.6

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSK  242 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrk  242 (307)
                      ..||.|.- |..  .++.+--|||.|+.+||..-|....+.||.|.+
T Consensus       275 LkCplc~~-Llr--np~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHC-LLR--NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhh-hhh--CcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            68999986 333  345555689999999999866656799999986

>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional

Probab=82.59  E-value=0.93  Score=38.42  Aligned_cols=36  Identities=31%  Similarity=0.608  Sum_probs=26.0

Q ss_pred             ceeEEcCCCCCCcccc-c---ee-eeccCCCCCCccccccCC
Q 021794          271 KVWILCNDCGKTSNVQ-F---HV-LAQKCPNCKSYNTRLTRG  307 (307)
Q Consensus       271 ~~~IlCnDC~~~s~~~-f---H~-lg~kC~~C~SYNT~~~~~  307 (307)
                      .....| +|+..+... +   |+ ....||.|||++.+.++|
T Consensus        68 p~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~~G  108 (124)
T PRK00762         68 PVEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNKRAHILGG  108 (124)
T ss_pred             CeeEEe-eCcCcccccccchhccccCCcCcCCCCCCCEEecC
Confidence            567899 999875432 1   11 235799999999998875

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.82  E-value=0.98  Score=45.27  Aligned_cols=51  Identities=22%  Similarity=0.544  Sum_probs=41.1

Q ss_pred             CCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       191 E~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..+.+..||||.-.    +...+.-||||.-+..||.+.+.. ...|=.|+.++.+
T Consensus       418 p~sEd~lCpICyA~----pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~~  468 (489)
T KOG4692|consen  418 PDSEDNLCPICYAG----PINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVID  468 (489)
T ss_pred             CCcccccCcceecc----cchhhccCCCCchHHHHHHHHHhc-CCeeeEecceeee
Confidence            44668899999853    234567899999999999998874 5789999998876

>PHA03096 p28-like protein; Provisional

Probab=80.47  E-value=0.95  Score=43.71  Aligned_cols=47  Identities=17%  Similarity=0.246  Sum_probs=31.9

Q ss_pred             CCCcccccccccCc---ceeEEc-CCCCcccHHHHHHHHhcC--CCCCCCCCc
Q 021794          196 HDCPVCCEYLFETR---QDVIVL-PCGHTIHKNCLKEMREHH--QYACPICSK  242 (307)
Q Consensus       196 ~~CPIClE~lf~s~---~~v~~L-pCGH~fH~~Cl~~wl~~~--~~~CPiCrk  242 (307)
                      -.|.||+|......   .....| .|.|.|+..|+..|....  ..+||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            46999998765431   122345 699999999999998653  234666653

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=80.29  E-value=0.8  Score=34.76  Aligned_cols=33  Identities=36%  Similarity=0.960  Sum_probs=22.3

Q ss_pred             cccccccCCcccceeecCccccccCCCCCCccccCCCCc
Q 021794          122 VQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  160 (307)
Q Consensus       122 v~~~C~nCg~~f~~YfC~~Ckl~ddd~~k~~yHC~~Cgi  160 (307)
                      +...|.|||..+ =|-|.+|+.+.+     +|-|++||+
T Consensus        26 v~F~CPnCGe~~-I~Rc~~CRk~g~-----~Y~Cp~CGF   58 (61)
T COG2888          26 VKFPCPNCGEVE-IYRCAKCRKLGN-----PYRCPKCGF   58 (61)
T ss_pred             eEeeCCCCCcee-eehhhhHHHcCC-----ceECCCcCc
Confidence            567777787443 356777776643     688888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	307
2k2d_A	79	Solution Nmr Structure Of C-Terminal Domain Of Huma		3e-14
2k2c_A	137	Solution Nmr Structure Of N-Terminal Domain Of Huma		7e-12
2dkt_A	143	Solution Structure Of The Chy Zinc Finger Domain Of		9e-12
2ecm_A	55	Solution Structure Of The Ring Domain Of The Ring F		1e-04
2jrj_A	52	Solution Structure Of The Human Pirh2 Ring-H2 Domai		2e-04

>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2c Length = 79

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 40/65 (61%)
Query: 243 SVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 302
           S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT
Sbjct: 7   SALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66
Query: 303 RLTRG 307
               G
Sbjct: 67  AQAGG 71

>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCH--NEAMNNINVDQKLRHDIPRHEXXXXXXXXXXX 129
           GC+HY R C ++APCC++++ CR CH  NE         K    I   +           
Sbjct: 19  GCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEEC 78
Query: 130 XXXMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHPC 189
               GEY+C+ C LFD D  KKQYH             +FFHC KC  C +M L+  H C
Sbjct: 79  STLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKC 136
Query: 190 V 190
           +
Sbjct: 137 I 137

>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCH--NEAMNNINVDQKLRHDIPRHEXXXXXXXXXXX 129
           GC+HY R C ++APCC++++ CR CH  NE         K    I   +           
Sbjct: 18  GCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDC 77
Query: 130 XXXMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHPC 189
               GEY+C  C LFD D  K+QYH             +FFHC KC  C +  L+  H C
Sbjct: 78  STLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 135
Query: 190 VEGA 193
           +E  
Sbjct: 136 IESG 139

>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSK 242
            CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+CS 
Sbjct: 7   GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCSG 51

>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target Ht2b Length = 52

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKS 243
           E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S
Sbjct: 1   ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHS 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
2dkt_A	143	Ring finger and CHY zinc finger domain- containing	1e-34
2k2d_A	79	Ring finger and CHY zinc finger domain- containing	3e-29
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	8e-15
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	1e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-04
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	7e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	7e-04

>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143

 Score =  122 bits (306), Expect = 1e-34
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 4/129 (3%)

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRH--EVNQVQQVC 126
              GC+HY R C ++APCC++++ CR CH+   ++     K++     +  ++   QQ C
Sbjct: 15  GPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTC 74

Query: 127 VNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNS 186
            +C    GEY+C  C LFD D  K+QYHC+ CGICRIG  ++FFHC KC  C +  L+  
Sbjct: 75  EDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGK 132

Query: 187 HPCVEGAMH 195
           H C+E    
Sbjct: 133 HKCIESGPS 141

>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Length = 79

 Score =  106 bits (265), Expect = 3e-29
 Identities = 34/69 (49%), Positives = 40/69 (57%)

Query: 239 ICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCK 298
               S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+
Sbjct: 3   HMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICE 62

Query: 299 SYNTRLTRG 307
           SYNT    G
Sbjct: 63  SYNTAQAGG 71

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 66.5 bits (163), Expect = 8e-15
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 192 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
            +    CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+CS   
Sbjct: 2   SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 184 KNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKS 243
           +    C  G+    C +C     E  +DV + PCGH +  +CL   +E     CP C   
Sbjct: 321 QYELYCEMGSTFQLCKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCE 376

Query: 244 VCDMSKV 250
           +     +
Sbjct: 377 IKGTEPI 383

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYA--CPICSKSV 244
           CP+C E   E +    +L CGHTI + CL+++         CP CSK  
Sbjct: 18  CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 240
            C +C E L E     + LPC HT+ K C +   E     CP C
Sbjct: 17  QCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFC 56

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDR 256
           +CP+C E L     +     CG+ I + C   +R      CP C K   +   V++   +
Sbjct: 13  ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQ 72

Query: 257 E 257
           E
Sbjct: 73  E 73

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
            C  C E +F      I   C H + K+CL        ++CP C   +
Sbjct: 54  QCICCQELVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 240
           C  C E +++     +   C H + K+CL+   +   ++CP C
Sbjct: 81  CVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPAC 119

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKE-MREHHQYACPICSKSVCDMS 248
           E  +H  C VC E  F+ R ++ + PC H  H+ CL + +       CP+C+  V  ++
Sbjct: 11  ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKV--CPLCNMPVLQLA 66

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKE-MREHHQYACPICSKSV 244
            CP+CC   +        LPC H  HK C+   +++     CP+C    
Sbjct: 42  CCPICCS-EYVKGDVATELPCHHYFHKPCVSIWLQKSG--TCPVCRCMF 87

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
           + C  C   L   +Q      CGH   ++C+  +       C  C +S+
Sbjct: 16  YKCEKCHLVLCSPKQ----TECGHRFCESCMAALLSSSSPKCTACQESI 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
2dkt_A	143	Ring finger and CHY zinc finger domain- containing	100.0
2k2d_A	79	Ring finger and CHY zinc finger domain- containing	99.93
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.36
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.33
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.27
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.26
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.26
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.24
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.21
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.2
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.19
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.17
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.17
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.16
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.14
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.11
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.09
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.07
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.07
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.05
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.05
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.05
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.01
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.0
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.0
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.97
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.97
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.97
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.95
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.94
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.93
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.9
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.89
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.89
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.87
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.87
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.86
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.86
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.86
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.84
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.84
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.83
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.82
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.82
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.77
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.76
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.61
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.6
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.6
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.57
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.57
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.54
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.53
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.53
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.5
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.5
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.47
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.45
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.4
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.4
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.34
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.33
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.3
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.25
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.18
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.17
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.96
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.95
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.79
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.51
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.5
3nw0_A	238	Non-structural maintenance of chromosomes element	96.02
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.76
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	90.62
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	88.59
3a43_A	139	HYPD, hydrogenase nickel incorporation protein HYP	87.81
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	86.61
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	83.08
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	80.07

>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A

Probab=100.00  E-value=1.3e-49  Score=340.86  Aligned_cols=124  Identities=42%  Similarity=1.059  Sum_probs=115.7

Q ss_pred             hhcccCCCcCCCcccccCceeEcCccCCeecCCccccccccCcCcCCcCCcccCcccccc-----------cccccccCC
Q 021794           62 ELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQ-----------VQQVCVNCG  130 (307)
Q Consensus        62 ~~~~~~~~~~GC~HY~R~Cki~aPCC~~~y~CR~CHde~~~~~~~~~~~~H~l~R~~v~e-----------v~~~C~nCg  130 (307)
                      ..+|++.+++||+||+|+|+|+||||++|||||+||||+         ++|+|+|+++++           +++.|++||
T Consensus         8 ~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~---------~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg   78 (143)
T 2dkt_A            8 GVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTN---------EDHQLDRFKVKEVQCINCEKLQHAQQTCEDCS   78 (143)
T ss_dssp             CCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHT---------SSSCCCSSSCCCEEESSSCCEECSCSBCSSSC
T ss_pred             cccccccCcCCCcccCCCeeEECCCCCCccchhhhhccc---------cccccchhccceeeecccCccccccCcCCCCC
Confidence            455778889999999999999999999999999999996         479999988865           789999999


Q ss_pred             cccceeecCccccccCCCCCCccccCCCCcccccCCcceeeccCCCcceeccccCCccccCCCCCC
Q 021794          131 VCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHH  196 (307)
Q Consensus       131 ~~f~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~CiE~~~~~  196 (307)
                      +.||+|||+||||||  ++|+||||++|||||+|++++||||++||+|||++|+++|+|+|+++++
T Consensus        79 ~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s  142 (143)
T 2dkt_A           79 TLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS  142 (143)
T ss_dssp             CBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred             ccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence            999999999999996  4699999999999999999999999999999999999999999998864

>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=99.93  E-value=3.1e-27  Score=184.33  Aligned_cols=71  Identities=48%  Similarity=0.832  Sum_probs=38.0

Q ss_pred             CCCCCcccCchhHHHHHhHHHHhcCCCChhhhcCceeEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021794          237 CPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  307 (307)
Q Consensus       237 CPiCrks~~dm~~~~~~lD~eia~~pmPeey~~~~~~IlCnDC~~~s~~~fH~lg~kC~~C~SYNT~~~~~  307 (307)
                      ||+|+|++.||+.+|++||++|+++|||++|++++++|+||||+++|.++||||||||+.|+||||++++|
T Consensus         1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G   71 (79)
T 2k2d_A            1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG   71 (79)
T ss_dssp             --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC
T ss_pred             CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999875

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.36  E-value=4.4e-13  Score=94.03  Aligned_cols=52  Identities=38%  Similarity=0.913  Sum_probs=45.0

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      +.+..||||++.+.++...+++++|||.||..|+.+|++. +.+||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence            4568899999987676677889999999999999999986 489999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=9.3e-13  Score=100.97  Aligned_cols=52  Identities=19%  Similarity=0.436  Sum_probs=39.8

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ++..||||++++......+++++|||.||.+||.+||+. +.+||+||+++..
T Consensus        25 ~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           25 VMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             TTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             hhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            356788888875444333444469999999999999985 5799999998753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.27  E-value=2.5e-12  Score=90.31  Aligned_cols=49  Identities=31%  Similarity=0.777  Sum_probs=41.1

Q ss_pred             CCCCcccccccccCcceeEEcC-CCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      +..|+||++. +..++.++.++ |||.||..|+.+|++. +.+||+||+.+.
T Consensus         5 ~~~C~IC~~~-~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            5 GVECAVCLAE-LEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCC-CCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCcCccCCcc-ccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence            5689999997 44455677787 9999999999999985 689999998763

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=3.4e-12  Score=94.87  Aligned_cols=55  Identities=35%  Similarity=0.800  Sum_probs=46.0

Q ss_pred             CCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCch
Q 021794          191 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM  247 (307)
Q Consensus       191 E~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm  247 (307)
                      +...+..|+||++. +.....+++|||||.||..||.+|++. +.+||+||+.+..+
T Consensus        11 ~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           11 ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred             cCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence            44557899999997 555666788899999999999999986 56999999998754

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.26  E-value=4.1e-12  Score=93.21  Aligned_cols=53  Identities=28%  Similarity=0.659  Sum_probs=44.4

Q ss_pred             CCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          192 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       192 ~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ...+..|+||++. +.....++.|||||.||..||.+|+.. +.+||+||+.+..
T Consensus        11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA   63 (69)
T ss_dssp             TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred             CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence            3556789999996 555567889999999999999999986 5789999998764

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.7e-12  Score=95.97  Aligned_cols=52  Identities=35%  Similarity=0.715  Sum_probs=44.3

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .....|+||++. +.....++.|||||.||..||.+|++. +.+||+||+.+..
T Consensus        21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            446789999996 555667888999999999999999985 5799999998865

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.21  E-value=8.1e-12  Score=100.04  Aligned_cols=55  Identities=27%  Similarity=0.474  Sum_probs=42.2

Q ss_pred             CCCCCCcccccccccCc--------------ceeEEcCCCCcccHHHHHHHHhc----CCCCCCCCCcccCch
Q 021794          193 AMHHDCPVCCEYLFETR--------------QDVIVLPCGHTIHKNCLKEMREH----HQYACPICSKSVCDM  247 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~--------------~~v~~LpCGH~fH~~Cl~~wl~~----~~~~CPiCrks~~dm  247 (307)
                      ..+..||||++.|....              ..+++++|||.||..||.+|+..    .+.+||+||+.+...
T Consensus        23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            34578999999864321              23447899999999999999952    357899999988753

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.20  E-value=8.1e-12  Score=97.39  Aligned_cols=52  Identities=27%  Similarity=0.662  Sum_probs=43.6

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..+..|+||++. +.....++.|||||.||..||.+|++. +.+||+||+.+..
T Consensus        38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             CCCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            346789999996 555567888999999999999999985 6899999998753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.19  E-value=1.1e-11  Score=93.01  Aligned_cols=52  Identities=35%  Similarity=0.802  Sum_probs=43.9

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .....|+||++. +.....+++|+|||.||..||.+|++. +.+||+||+.+..
T Consensus        13 ~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   64 (78)
T 2ect_A           13 GSGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred             CCCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence            346799999996 555567788999999999999999985 5899999998864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.17  E-value=1.2e-11  Score=90.68  Aligned_cols=53  Identities=25%  Similarity=0.664  Sum_probs=43.2

Q ss_pred             CCCCCCcccccccccC---cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..+..||||++.+.+.   ...++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence            4467899999975442   244588999999999999999985 5799999998864

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.17  E-value=2.4e-11  Score=88.42  Aligned_cols=52  Identities=23%  Similarity=0.560  Sum_probs=42.1

Q ss_pred             CCCCccccc-ccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCE-YLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE-~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++ .+.+....+++++|||+||..|+.+|+.....+||+||+.+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            568999999 6555444446789999999999999987666789999998863

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.8e-11  Score=88.94  Aligned_cols=52  Identities=25%  Similarity=0.674  Sum_probs=42.3

Q ss_pred             CCCCCCcccccccccC---cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      .....||||++.+.+.   ...+++++|||.||..||.+|+.. +.+||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence            3467899999975442   234578999999999999999985 689999999875

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.14  E-value=2.6e-11  Score=86.84  Aligned_cols=51  Identities=25%  Similarity=0.699  Sum_probs=42.0

Q ss_pred             CCCCcccccccccC---cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++.+.+.   .+.++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   56 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence            56899999975442   244578999999999999999986 6899999998864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=5.2e-11  Score=90.52  Aligned_cols=53  Identities=34%  Similarity=0.706  Sum_probs=43.2

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC--CCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~d  246 (307)
                      ....||||++.+..+...+++|+|||+||..|+..|+...  ..+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            3568999999755544447889999999999999999853  4789999998764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.09  E-value=5.6e-11  Score=86.72  Aligned_cols=49  Identities=27%  Similarity=0.635  Sum_probs=41.2

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .+..||||++.+.   .+++.+||||.||..|+.+|++. +.+||+||+.+..
T Consensus         4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            3678999999643   24688999999999999999985 5899999998874

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.07  E-value=1.8e-10  Score=86.33  Aligned_cols=49  Identities=16%  Similarity=0.478  Sum_probs=41.2

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ..+..||||++. +.   .+++++|||+||..||.+|+..++.+||+||+.+.
T Consensus         6 ~~~~~C~IC~~~-~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            6 PEYFRCPISLEL-MK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             SSSSSCTTTSCC-CS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             cccCCCCCcccc-cc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence            346789999995 44   35678999999999999999865789999999886

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.07  E-value=1e-10  Score=94.98  Aligned_cols=34  Identities=21%  Similarity=0.457  Sum_probs=30.2

Q ss_pred             eeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          211 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       211 ~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      .++.++|||.||..||.+||.. +.+||+||+++.
T Consensus        67 ~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           67 TVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             CEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             eEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            4677899999999999999985 689999999864

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.05  E-value=2.2e-11  Score=93.70  Aligned_cols=58  Identities=29%  Similarity=0.643  Sum_probs=44.1

Q ss_pred             CCCCCcccccccccCcceeEEcC--CCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHH
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLP--CGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEK  253 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~Lp--CGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~  253 (307)
                      .+..||||+|.+..  .++.++|  |||.|+..|+..++....+.||+||+.+......|+.
T Consensus        10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~   69 (78)
T 1e4u_A           10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKP   69 (78)
T ss_dssp             CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCS
T ss_pred             cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhcc
Confidence            46789999996432  2344554  9999999999998865678999999999876554443

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=8.7e-11  Score=87.00  Aligned_cols=49  Identities=20%  Similarity=0.529  Sum_probs=40.6

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..+..||||++.+ .   .++.++|||.||..|+.+|+.. ..+||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~-~---~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTC-V---HPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBC-S---SEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred             CCCCCCccCCccc-C---CCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence            3467899999964 3   3577899999999999999985 5899999998864

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=88.20  Aligned_cols=48  Identities=21%  Similarity=0.509  Sum_probs=40.2

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      .....||||++.+ .   .+++++|||+||..|+.+|+.. ..+||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAF-Q---NPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBC-C---SEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchh-c---CeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence            3456899999964 3   2567999999999999999985 689999999986

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=2.2e-10  Score=84.43  Aligned_cols=50  Identities=26%  Similarity=0.775  Sum_probs=40.5

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc--CCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiCrks~~d  246 (307)
                      ..+..||||++. +.   .+++++|||.||..|+..|++.  ...+||+||+.+..
T Consensus        18 ~~~~~C~IC~~~-~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSB-CS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcc-cC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            346789999995 43   3667899999999999999962  45789999998753

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.4e-10  Score=84.50  Aligned_cols=49  Identities=18%  Similarity=0.477  Sum_probs=39.9

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .+..||||++. +.   .++.++|||.||..|+.+|+.....+||+||+.+..
T Consensus        14 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           14 DKYKCEKCHLV-LC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCEECTTTCCE-ES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             cCCCCCCCChH-hc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            35689999986 43   244589999999999999996556789999998864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.7e-10  Score=85.57  Aligned_cols=49  Identities=27%  Similarity=0.535  Sum_probs=39.6

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .+..||||++.+.+   ++.+++|||.||..||.+|++. +.+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   62 (72)
T 2djb_A           14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ   62 (72)
T ss_dssp             GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred             CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence            35689999996433   3444599999999999999985 6899999998864

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=3.3e-11  Score=88.58  Aligned_cols=49  Identities=22%  Similarity=0.734  Sum_probs=40.9

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCch
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM  247 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm  247 (307)
                      .....||||++. +..    +++||||.||..|+.+|+. .+.+||+||+.+...
T Consensus        13 ~~~~~C~IC~~~-~~~----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           13 TDEEECCICMDG-RAD----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCSSSCCS-CCS----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred             CCCCCCeeCCcC-ccC----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence            346789999996 432    7899999999999999998 468999999988754

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.97  E-value=1.5e-10  Score=86.60  Aligned_cols=49  Identities=22%  Similarity=0.679  Sum_probs=39.6

Q ss_pred             CCCCcccccccccCcceeEEcC-CCCcccHHHHHHHHhcC-CCCCCCCCcccCch
Q 021794          195 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-QYACPICSKSVCDM  247 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~-~~~CPiCrks~~dm  247 (307)
                      +..||||++. +.   .+++++ |||+||..||..|+... ..+||+||+.+...
T Consensus        15 ~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2yur_A           15 ELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP   65 (74)
T ss_dssp             GGSCSSSCCC-CT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred             CCCCcCCChH-Hh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence            5689999995 43   356788 99999999999999753 36899999986643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.97  E-value=2.7e-10  Score=91.78  Aligned_cols=52  Identities=25%  Similarity=0.669  Sum_probs=42.6

Q ss_pred             CCCCCcccccccccC---cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .+..||||++.+.+.   ++.+++++|||+||..||.+|++. +.+||+||+.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence            457899999975442   344588999999999999999985 5799999998864

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.97  E-value=2.6e-10  Score=94.99  Aligned_cols=46  Identities=30%  Similarity=0.852  Sum_probs=39.4

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..||||++.+ .   .++++||||+||..||..|+.. +.+||+||+++..
T Consensus        54 ~~C~iC~~~~-~---~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           54 LQCIICSEYF-I---EAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS   99 (138)
T ss_dssp             SBCTTTCSBC-S---SEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred             CCCcccCccc-C---CceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence            4699999964 3   3678899999999999999985 6889999999874

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.95  E-value=3.4e-10  Score=89.56  Aligned_cols=49  Identities=16%  Similarity=0.448  Sum_probs=39.8

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++. +.  .++..++|||.||..||.+|+......||+||+++..
T Consensus        22 ~~~C~IC~~~-~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           22 VFRCFICMEK-LR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HTBCTTTCSB-CS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCccCCcc-cc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            4679999996 43  2343399999999999999998655799999999863

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=5.9e-10  Score=80.37  Aligned_cols=44  Identities=25%  Similarity=0.850  Sum_probs=35.8

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc--CCCCCCCC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC  240 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiC  240 (307)
                      ..+..||||++. +.   .+++++|||+||..||.+|++.  ...+||+|
T Consensus        18 ~~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSB-CS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCch-hC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            346789999996 43   3567899999999999999974  45789998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.93  E-value=5.2e-10  Score=91.17  Aligned_cols=48  Identities=25%  Similarity=0.598  Sum_probs=40.5

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++. +.   .++++||||+||..||..|+......||+||+.+..
T Consensus        52 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQEL-VF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChH-Hc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            4579999995 44   356789999999999999998666799999999864

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.90  E-value=9.7e-10  Score=82.39  Aligned_cols=49  Identities=22%  Similarity=0.619  Sum_probs=40.0

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC-----CCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-----QYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-----~~~CPiCrks~~d  246 (307)
                      .+..||||++. +.   .+++++|||+||..|+..|+...     ...||+||+.+..
T Consensus        18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           18 EEVTCPICLEL-LK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             TTTSCTTTCSC-CS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             cCCCCcCCChh-hC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            35789999996 43   24578999999999999999862     5789999998763

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=9.2e-10  Score=77.50  Aligned_cols=43  Identities=37%  Similarity=1.033  Sum_probs=34.8

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc--CCCCCCCC
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC  240 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiC  240 (307)
                      ....||||++.+.+    +++++|||.||..||.+|+..  ...+||+|
T Consensus        14 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            35789999996432    456899999999999999654  46789998

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.89  E-value=2.4e-10  Score=85.34  Aligned_cols=49  Identities=27%  Similarity=0.756  Sum_probs=40.0

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC------CCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH------QYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~------~~~CPiCrks~~d  246 (307)
                      .+..||||++. +.   .+++|+|||+||..|+..|+...      ..+||+||+.+..
T Consensus        11 ~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           11 EEVTCPICLEL-LT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCEETTTTEE-CS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             cCCCCcCCCcc-cC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            35789999996 44   24568999999999999999752      5789999998864

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=1.2e-09  Score=84.41  Aligned_cols=52  Identities=19%  Similarity=0.547  Sum_probs=41.1

Q ss_pred             CCCCCCCcccccccccCcceeEEcCCC-----CcccHHHHHHHHhcC-CCCCCCCCcccC
Q 021794          192 GAMHHDCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICSKSVC  245 (307)
Q Consensus       192 ~~~~~~CPIClE~lf~s~~~v~~LpCG-----H~fH~~Cl~~wl~~~-~~~CPiCrks~~  245 (307)
                      .+.+..|+||++. ++...+ +++||+     |.||..||++||... ..+||+||..+.
T Consensus        12 ~~~~~~C~IC~~~-~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           12 PSSQDICRICHCE-GDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             CTTSCCCSSSCCC-CCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCCCeEcCcc-ccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            3456789999986 443443 579996     999999999999863 368999999875

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.87  E-value=1.1e-09  Score=84.38  Aligned_cols=48  Identities=23%  Similarity=0.690  Sum_probs=39.3

Q ss_pred             CCCCCcccccccccCcceeEEcC-CCCcccHHHHHHHHhc-CCCCCCCCCcccC
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREH-HQYACPICSKSVC  245 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  245 (307)
                      .+..||||++. +.   .++++| |||+|+..||..|+.. ....||+||+.+.
T Consensus        12 ~~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           12 DELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             TTTEETTTTEE-CS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCCCCCCChh-hc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            35789999985 44   356889 9999999999999864 3478999999973

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.86  E-value=2.9e-10  Score=94.12  Aligned_cols=50  Identities=18%  Similarity=0.501  Sum_probs=0.5

Q ss_pred             CCCCccccccccc--------------CcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFE--------------TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~--------------s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      +..|+||++.+.+              ....++.++|||.||..||.+||+. +.+||+||+++.
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            4689999887532              1123445799999999999999985 689999999764

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=1.3e-09  Score=81.71  Aligned_cols=49  Identities=29%  Similarity=0.745  Sum_probs=40.1

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-----CCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-----HQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-----~~~~CPiCrks~~d  246 (307)
                      ....||||++. +.   .++.++|||.||..|+..|+..     ....||+||+.+..
T Consensus        18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           18 EEVTCPICLEL-LT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCTTTCSC-CS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCCCCCCCCcc-cC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            46789999996 43   2456899999999999999875     25889999998863

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.86  E-value=1.4e-09  Score=85.21  Aligned_cols=48  Identities=27%  Similarity=0.751  Sum_probs=38.8

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++. +..  ++.+++|||+||..|+..|+.. +.+||+||..+..
T Consensus        22 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEY-FNI--AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSB-CSS--EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred             CCCcccCChh-hCC--cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence            4689999996 432  3344499999999999999984 6899999998873

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.84  E-value=1.7e-09  Score=86.05  Aligned_cols=48  Identities=31%  Similarity=0.714  Sum_probs=39.3

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++. +.  +++.+++|||+||..|+..|+.. +.+||+||+.+..
T Consensus        15 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           15 HLMCVLCGGY-FI--DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK   62 (108)
T ss_dssp             GTBCTTTSSB-CS--SEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred             cCCCccCChH-Hh--CcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence            5689999996 43  24444599999999999999985 5899999998864

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.84  E-value=1.8e-09  Score=92.03  Aligned_cols=48  Identities=23%  Similarity=0.598  Sum_probs=39.7

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      +..||||++.+.+   ++.+++|||+||..||..|+......||+||+.+.
T Consensus        54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence            3489999996432   45556999999999999999865788999999885

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.83  E-value=6.2e-10  Score=89.44  Aligned_cols=48  Identities=33%  Similarity=0.868  Sum_probs=40.4

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++.+.    .+++|+|||+||..||..|+......||+||+.+..
T Consensus        15 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           15 ECQCGICMEILV----EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHBCTTTCSBCS----SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCccCCcccC----ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            457999998643    356789999999999999998667899999998863

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.82  E-value=1.4e-09  Score=87.45  Aligned_cols=48  Identities=19%  Similarity=0.475  Sum_probs=40.3

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++. +.   .++.++|||+||..||.+|+.....+||+||+.+..
T Consensus        23 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           23 SISCQICEHI-LA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcH-hc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            4679999985 43   356689999999999999998656789999999874

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.82  E-value=1.3e-09  Score=92.80  Aligned_cols=48  Identities=23%  Similarity=0.607  Sum_probs=40.4

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ...||||++. +.   .++++||||+||..||..|+......||+||..+..
T Consensus        78 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           78 SFMCVCCQEL-VY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ  125 (150)
T ss_dssp             HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCEeecCChh-hc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence            4679999995 43   356799999999999999998766789999998874

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.77  E-value=3.2e-09  Score=85.45  Aligned_cols=53  Identities=25%  Similarity=0.664  Sum_probs=42.7

Q ss_pred             CCCCCCcccccccccC---cceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .....|+||++.+...   ...++.++|||.||..|+.+|++. +.+||+||+++..
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH  125 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence            4467899999965431   234578899999999999999985 5799999998864

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.76  E-value=3.3e-09  Score=84.02  Aligned_cols=47  Identities=23%  Similarity=0.754  Sum_probs=38.2

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC--CCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~  245 (307)
                      ...||||++. +.   .++.++|||+||..|+..|+...  ..+||+||..+.
T Consensus        21 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           21 ILECPICLEL-IK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             HTSCSSSCCC-CS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CCCCcccChh-hc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            4579999995 43   34568999999999999999753  258999999876

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.75  E-value=3.6e-09  Score=85.73  Aligned_cols=48  Identities=23%  Similarity=0.674  Sum_probs=40.3

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++. +.   .++.++|||+||..||.+|+.....+||+||+.+..
T Consensus        18 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCcCChh-hc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            5689999985 43   346789999999999999998655699999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.61  E-value=3.7e-08  Score=88.39  Aligned_cols=50  Identities=12%  Similarity=0.109  Sum_probs=41.9

Q ss_pred             CCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          192 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       192 ~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ......||||++. +.   +++++||||+|++.||..|+.....+||+||.++.
T Consensus       205 ~~~~~~c~i~~~~-~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~  254 (281)
T 2c2l_A          205 IPDYLCGKISFEL-MR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT  254 (281)
T ss_dssp             CCSTTBCTTTCSB-CS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             CCcccCCcCcCCH-hc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence            3457789999994 54   47789999999999999999865566999999886

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.60  E-value=1.8e-08  Score=81.47  Aligned_cols=44  Identities=23%  Similarity=0.663  Sum_probs=37.2

Q ss_pred             CCCCcccccccccCcceeEEc-CCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      +..||||++. +.   .++++ +|||+||..||..|+.   ..||+||+.+.
T Consensus        22 ~~~C~IC~~~-~~---~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~   66 (117)
T 1jm7_B           22 LLRCSRCTNI-LR---EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW   66 (117)
T ss_dssp             TTSCSSSCSC-CS---SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred             CCCCCCCChH-hh---CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence            5789999985 43   34566 9999999999999986   78999999885

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.60  E-value=1.9e-08  Score=73.84  Aligned_cols=50  Identities=18%  Similarity=0.453  Sum_probs=39.6

Q ss_pred             CCCCCCCcccccccccCcceeEEc--CCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          192 GAMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       192 ~~~~~~CPIClE~lf~s~~~v~~L--pCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ...+..|+||++...    .++++  ||||. |+..|+..|+.. +..||+||+.+..
T Consensus         5 ~~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~   57 (64)
T 2vje_A            5 LNAIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM   57 (64)
T ss_dssp             CGGGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred             CCCcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence            345678999998522    34555  99999 899999999874 5789999998864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.57  E-value=3e-08  Score=76.63  Aligned_cols=48  Identities=13%  Similarity=0.204  Sum_probs=41.0

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .+..||||++. +.   ++++++|||+|.+.||..|+.. +.+||+|+..+..
T Consensus        13 ~~~~CpI~~~~-m~---dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~   60 (85)
T 2kr4_A           13 DEFRDPLMDTL-MT---DPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE   60 (85)
T ss_dssp             TTTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred             hheECcccCch-hc---CCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence            46789999994 54   4778999999999999999985 6899999998863

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.57  E-value=1e-08  Score=73.10  Aligned_cols=45  Identities=29%  Similarity=0.566  Sum_probs=36.6

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      .....|+||++. +.   .+++|||||+|+..|+..|    ..+||+||+.+.
T Consensus         4 ~~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAE-AK---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSS-CB---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCc-cC---CeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence            346789999985 44   3578999999999999884    468999999875

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.54  E-value=1.3e-08  Score=85.80  Aligned_cols=47  Identities=19%  Similarity=0.448  Sum_probs=38.9

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCccc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV  244 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~  244 (307)
                      .+..||||++. +.   .++.++|||+|+..||.+|+.....+||+||+++
T Consensus        30 ~~~~C~IC~~~-~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           30 AKYLCSACRNV-LR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCcCCCCCChh-hc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            35689999995 43   2466899999999999999986656899999965

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.53  E-value=2e-08  Score=75.44  Aligned_cols=43  Identities=26%  Similarity=0.767  Sum_probs=36.4

Q ss_pred             CCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..|+||++.+.    .++++||||. |+..|+..|     ..||+||+.+..
T Consensus        24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            467999998532    4678899999 999999998     679999998865

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.53  E-value=4.5e-08  Score=78.18  Aligned_cols=48  Identities=13%  Similarity=0.203  Sum_probs=40.9

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ..+..||||++. +.   ++++++|||+|.+.||..|+. .+.+||+|+.++.
T Consensus        27 p~~~~CpI~~~~-m~---dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~   74 (100)
T 2kre_A           27 PDEFRDPLMDTL-MT---DPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLT   74 (100)
T ss_dssp             STTTBCTTTCSB-CS---SEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred             cHhhCCcCccCc-cc---CCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence            346789999984 54   477889999999999999998 4689999999886

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.50  E-value=3.7e-08  Score=72.08  Aligned_cols=49  Identities=22%  Similarity=0.538  Sum_probs=38.5

Q ss_pred             CCCCCCcccccccccCcceeEEc--CCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~L--pCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .....|+||++...    ..+++  ||||. |+..|+..|.+. +.+||+||+++..
T Consensus         5 ~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~   56 (63)
T 2vje_B            5 NLLKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL   56 (63)
T ss_dssp             GGGSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred             CcCCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence            34678999998522    23344  99998 999999999874 5789999998864

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.50  E-value=7.5e-08  Score=76.65  Aligned_cols=48  Identities=15%  Similarity=0.178  Sum_probs=40.9

Q ss_pred             CCCCCcccccccccCcceeEEcCCC-CcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .+..||||++. +.   ++++++|| |+|.+.||..||.. +.+||+||..+..
T Consensus        21 ~~~~CpI~~~~-m~---dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~   69 (98)
T 1wgm_A           21 DEFLDPIMSTL-MC---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSB-CS---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred             HhcCCcCcccc-cc---CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence            46789999994 54   47789999 99999999999985 6899999998863

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.47  E-value=6.2e-08  Score=82.69  Aligned_cols=48  Identities=23%  Similarity=0.674  Sum_probs=40.1

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++. +.   .++.++|||+|+..|+.+|+.....+||+||..+..
T Consensus        18 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCChh-hc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            5689999996 43   246689999999999999998655699999998875

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=8.9e-08  Score=73.33  Aligned_cols=49  Identities=20%  Similarity=0.466  Sum_probs=38.2

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC-CCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-~~~CPiCrks~~d  246 (307)
                      -.+|+||.+.+ ...  ..-..|+|.||..||.+||+.. +.+||+||..+..
T Consensus        15 i~~C~IC~~~i-~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           15 VKICNICHSLL-IQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SCBCSSSCCBC-SSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCcCcchhhHc-ccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            46899999854 433  2334899999999999999853 2789999988763

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=2.2e-07  Score=72.84  Aligned_cols=46  Identities=28%  Similarity=0.608  Sum_probs=37.1

Q ss_pred             CCCCCcccccccccCcceeEEcC-CCCcccHHHHHHHHhcC-----CCCCCC--CCcc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-----QYACPI--CSKS  243 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~-----~~~CPi--Crks  243 (307)
                      .+..||||++. |.   ++++++ |||+|.+.||.+||...     ..+||+  |++.
T Consensus         6 ~~~~CPI~~~~-~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEE-MK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSB-CS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCch-hc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            36789999984 54   366775 99999999999999752     468999  9866

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.40  E-value=1.5e-07  Score=91.98  Aligned_cols=48  Identities=31%  Similarity=0.755  Sum_probs=40.6

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ...|+||++.+    ..++.+||||.||..|+..|+.....+||+||..+..
T Consensus       332 ~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            46899999863    2467899999999999999998556889999998864

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.34  E-value=5.1e-07  Score=70.17  Aligned_cols=49  Identities=24%  Similarity=0.524  Sum_probs=37.2

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-------CCCCCCC--CCcc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPI--CSKS  243 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-------~~~~CPi--Crks  243 (307)
                      ....||||++. +.....+.+.+|||.|+..|+..|+..       ...+||.  |+..
T Consensus         4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35689999996 443333344589999999999998763       1357999  9998

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=1.8e-07  Score=70.06  Aligned_cols=43  Identities=26%  Similarity=0.738  Sum_probs=34.7

Q ss_pred             CCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..|+||++. +.   .++++||||. |+..|+..+     ..||+||+.+..
T Consensus        25 ~~~C~IC~~~-~~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSS-CC---CBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred             CCCCCcCCCC-CC---CEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence            3579999985 33   4678999999 999999643     679999998865

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.30  E-value=6.8e-07  Score=78.88  Aligned_cols=49  Identities=12%  Similarity=0.136  Sum_probs=40.4

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .+..||||++. +.   +++++||||+|.+.||..|+.....+||+|+.++..
T Consensus       105 ~~f~CPI~~el-m~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          105 DYLCGKISFEL-MR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             GGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             HhhcccCcccc-CC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            45789999994 54   477889999999999999997643479999998863

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=5.8e-07  Score=66.87  Aligned_cols=46  Identities=33%  Similarity=0.717  Sum_probs=37.4

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCch
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM  247 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~dm  247 (307)
                      .....|+||++. +   ..+++|||||. |+..|+..     ...||+||..+...
T Consensus        13 ~~~~~C~IC~~~-~---~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           13 ENSKDCVVCQNG-T---VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CCSSCCSSSSSS-C---CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCCcCcC-C---CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence            446789999985 2   35789999999 99999984     26799999988753

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.18  E-value=4.4e-07  Score=69.30  Aligned_cols=44  Identities=34%  Similarity=0.820  Sum_probs=36.3

Q ss_pred             CCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCch
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM  247 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~dm  247 (307)
                      +..|+||++.+    ..++++||||. |+..|+..|     ..||+||..+...
T Consensus        18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred             CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence            45799999853    24788999999 999999877     2799999988753

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.17  E-value=8.8e-07  Score=64.81  Aligned_cols=51  Identities=25%  Similarity=0.513  Sum_probs=38.8

Q ss_pred             CCCCCCCCcccccccccCcceeEEcCCC--C---cccHHHHHHHHhc-CCCCCCCCCcccC
Q 021794          191 EGAMHHDCPVCCEYLFETRQDVIVLPCG--H---TIHKNCLKEMREH-HQYACPICSKSVC  245 (307)
Q Consensus       191 E~~~~~~CPIClE~lf~s~~~v~~LpCG--H---~fH~~Cl~~wl~~-~~~~CPiCrks~~  245 (307)
                      |......|.||++. .  ..+ .++||.  +   .||..||.+|+.. .+.+||+|+..+.
T Consensus         2 e~~~~~~CrIC~~~-~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            2 EDEDVPVCWICNEE-L--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TTCSCCEETTTTEE-C--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCEeEEeecC-C--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            44567789999985 2  223 468965  4   8999999999975 4678999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.96  E-value=1.6e-06  Score=83.97  Aligned_cols=54  Identities=20%  Similarity=0.472  Sum_probs=39.9

Q ss_pred             CCCCCCCcccccccccCcceeE----EcCCCCcccHHHHHHHHhcCC----------CCCCCCCcccC
Q 021794          192 GAMHHDCPVCCEYLFETRQDVI----VLPCGHTIHKNCLKEMREHHQ----------YACPICSKSVC  245 (307)
Q Consensus       192 ~~~~~~CPIClE~lf~s~~~v~----~LpCGH~fH~~Cl~~wl~~~~----------~~CPiCrks~~  245 (307)
                      .....+|+||++.+.+++.-+.    -++|||.||..|+.+|+.+..          ..||.||+++.
T Consensus       305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            3457799999997655333221    358999999999999997411          46999999775

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.95  E-value=3.2e-06  Score=78.89  Aligned_cols=50  Identities=24%  Similarity=0.664  Sum_probs=40.0

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-CCCCCCC--CCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPI--CSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPi--Crks~~  245 (307)
                      ..+..||||++. |.  +|++...|||+|.+.||..|+.. +..+||+  |++.+.
T Consensus       179 ~~el~CPIcl~~-f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          179 KIELTCPITCKP-YE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             BCCSBCTTTSSB-CS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             ceeeECcCccCc-cc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            346789999996 43  35656799999999999999975 3467999  999775

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.79  E-value=4.7e-06  Score=80.03  Aligned_cols=43  Identities=30%  Similarity=0.834  Sum_probs=36.4

Q ss_pred             CCCCcccccccccCcceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..|+||++. +.   .++.|||||. |+..|+..|     ..||+||..+..
T Consensus       295 ~~~C~IC~~~-~~---~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          295 ERTCKVCMDK-EV---SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             TCBCTTTSSS-BC---CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CCCCCccCCc-CC---ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            5689999995 33   4778899999 999999988     579999998864

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.51  E-value=4e-05  Score=55.97  Aligned_cols=48  Identities=13%  Similarity=0.153  Sum_probs=37.8

Q ss_pred             CCCCCcccccccccCcceeEEc-CCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +...|||+++. +.   +++++ ++||+|-+.+|.+|++. +.+||+.++.+..
T Consensus         2 ~~~~CpIs~~~-m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~   50 (61)
T 2bay_A            2 SHMLCAISGKV-PR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI   50 (61)
T ss_dssp             --CCCTTTCSC-CS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred             CeEEecCCCCC-CC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence            35689999995 44   34566 99999999999999985 4679999988763

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.50  E-value=6.9e-05  Score=60.66  Aligned_cols=49  Identities=22%  Similarity=0.419  Sum_probs=39.7

Q ss_pred             CCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchh
Q 021794          197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS  248 (307)
Q Consensus       197 ~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~  248 (307)
                      .|++|.-++.   ...+.+||+|+|+.+|+..|.+....+||+|+.++.+.+
T Consensus         3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe   51 (101)
T 3vk6_A            3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE   51 (101)
T ss_dssp             BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred             ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence            4788875433   246789999999999999998766789999999998653

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=96.02  E-value=0.004  Score=56.69  Aligned_cols=49  Identities=20%  Similarity=0.503  Sum_probs=35.8

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC-CCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-~~~CPiCrks~~d  246 (307)
                      -..|.||.+-+.. +  ..--.|+|.||..|+..|++.. +.+||.|+..+..
T Consensus       180 i~~C~iC~~iv~~-g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQ-G--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSS-C--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhC-C--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            4568888874332 2  2223499999999999999753 4689999998753

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.76  E-value=0.078  Score=40.89  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=24.9

Q ss_pred             CCCCcccccccccCcceeEE-cCCCCcccHHHHHHH
Q 021794          195 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEM  229 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~w  229 (307)
                      +..|+||++.++.  .++.. +.|||+|+..|+..+
T Consensus         3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence            5679999974333  23333 999999999999984

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=90.62  E-value=0.37  Score=40.87  Aligned_cols=50  Identities=22%  Similarity=0.446  Sum_probs=35.0

Q ss_pred             cCCCCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHh----------cCCCCCCCCCcc
Q 021794          190 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----------HHQYACPICSKS  243 (307)
Q Consensus       190 iE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~----------~~~~~CPiCrks  243 (307)
                      .+...+..|.||.+-    ++-+.-=.|--+||..|+.+-+.          .+.-.||+|+..
T Consensus        58 d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~  117 (142)
T 2lbm_A           58 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE  117 (142)
T ss_dssp             CTTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred             cCCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence            356678999999972    32111126889999999997542          245789999954

>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*

Probab=87.81  E-value=0.19  Score=42.13  Aligned_cols=37  Identities=22%  Similarity=0.621  Sum_probs=29.4

Q ss_pred             ceeEEcCCCCCCccc-------------cceee------eccCCCCCCccccccCC
Q 021794          271 KVWILCNDCGKTSNV-------------QFHVL------AQKCPNCKSYNTRLTRG  307 (307)
Q Consensus       271 ~~~IlCnDC~~~s~~-------------~fH~l------g~kC~~C~SYNT~~~~~  307 (307)
                      .+...|.+|+.....             .+|++      ..+||.|||++..+++|
T Consensus        68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G  123 (139)
T 3a43_A           68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKG  123 (139)
T ss_dssp             CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEES
T ss_pred             CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecC
Confidence            467899999987532             56776      68999999999987764

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=86.61  E-value=0.24  Score=39.32  Aligned_cols=83  Identities=22%  Similarity=0.543  Sum_probs=44.9

Q ss_pred             CCCcccccCC-cceeeccCCCcce-----ecccc----CCccccCCCCCCCCcccccccccCcceeEEcCCCCcccHHHH
Q 021794          157 GCGICRIGGC-DNFFHCNKCRCCY-----SMLLK----NSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL  226 (307)
Q Consensus       157 ~CgiCR~G~~-~~ffHC~~C~~C~-----s~~l~----~~H~CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl  226 (307)
                      .|.||..||. ++...|+.|+.-|     .+.+.    ..=.|.+=   ..|.||.+. .+...-+.--.|.-.||..|+
T Consensus         9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl   84 (111)
T 2ysm_A            9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS-GEDSKMLVCDTCDKGYHTFCL   84 (111)
T ss_dssp             CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC-SCCTTEEECSSSCCEEEGGGS
T ss_pred             CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc-CCCCCeeECCCCCcHHhHHhc
Confidence            4666766663 5667777777544     33221    11112110   146677753 111111111278899999999


Q ss_pred             HHHHhc---CCCCCCCCCcc
Q 021794          227 KEMREH---HQYACPICSKS  243 (307)
Q Consensus       227 ~~wl~~---~~~~CPiCrks  243 (307)
                      .+-+..   ....||.|...
T Consensus        85 ~ppl~~~P~g~W~C~~C~~c  104 (111)
T 2ysm_A           85 QPVMKSVPTNGWKCKNCRIC  104 (111)
T ss_dssp             SSCCSSCCSSCCCCHHHHCC
T ss_pred             CCccccCCCCCcCCcCCcCc
Confidence            875432   34678888643

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=83.08  E-value=0.49  Score=38.15  Aligned_cols=35  Identities=31%  Similarity=0.568  Sum_probs=27.9

Q ss_pred             ceeEEcCCCCCCccccceeeec-cCCCCCCccccccCC
Q 021794          271 KVWILCNDCGKTSNVQFHVLAQ-KCPNCKSYNTRLTRG  307 (307)
Q Consensus       271 ~~~IlCnDC~~~s~~~fH~lg~-kC~~C~SYNT~~~~~  307 (307)
                      .+...|.+|+......-.  .. +||.|+|.+.++++|
T Consensus        71 p~~~~C~~CG~~~e~~~~--~~~~CP~Cgs~~~~i~~G  106 (119)
T 2kdx_A           71 KVELECKDCSHVFKPNAL--DYGVCEKCHSKNVIITQG  106 (119)
T ss_dssp             CCEEECSSSSCEECSCCS--TTCCCSSSSSCCCEEEES
T ss_pred             cceEEcCCCCCEEeCCCC--CCCcCccccCCCcEEecC
Confidence            467899999988765432  46 899999999998765

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=80.07  E-value=0.99  Score=36.03  Aligned_cols=75  Identities=17%  Similarity=0.433  Sum_probs=43.2

Q ss_pred             cCCcceeeccCCCcceecc-c-----------cCCccccCCCCCCCCcccccccccCcceeEE-cCCCCcccHHHHHHHH
Q 021794          164 GGCDNFFHCNKCRCCYSML-L-----------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMR  230 (307)
Q Consensus       164 G~~~~ffHC~~C~~C~s~~-l-----------~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl  230 (307)
                      |.+++...|..|+.-|-.. |           ...=.|.+=   ..|.||.+.-.+ ...++. -.|...||..|+.+-|
T Consensus        21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~-~~~ll~Cd~C~~~yH~~Cl~p~l   96 (112)
T 3v43_A           21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKN-ADNMLFCDSCDRGFHMECCDPPL   96 (112)
T ss_dssp             SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCT-TCCCEECTTTCCEECGGGCSSCC
T ss_pred             CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCC-ccceEEcCCCCCeeecccCCCCC
Confidence            3457888888887665221 1           122233321   157788752111 112222 2688999999998755


Q ss_pred             hc---CCCCCCCCCc
Q 021794          231 EH---HQYACPICSK  242 (307)
Q Consensus       231 ~~---~~~~CPiCrk  242 (307)
                      ..   +...||.|+.
T Consensus        97 ~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           97 TRMPKGMWICQICRP  111 (112)
T ss_dssp             SSCCSSCCCCTTTSC
T ss_pred             CCCCCCCeECCCCCC
Confidence            43   3467999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d2dkta2	56	g.93.1.1 (A:82-137) RING finger and CHY zinc finge	1e-20
d2dkta1	74	g.89.1.1 (A:8-81) RING finger and CHY zinc finger	2e-06
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	7e-05
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	6e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	0.001
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	0.003
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	0.003

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.3 bits (201), Expect = 1e-20
 Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 134 GEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVE 191
           GEY+C  C LFD D  K+QYHC+ CGICRIG  ++FFHC KC  C +  L+  H C+E
Sbjct: 1   GEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIE 56

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (100), Expect = 2e-06
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 71  YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRH--EVNQVQQVCVN 128
            GC+HY R C ++APCC++++ CR CH+   ++     K++     +  ++   QQ C +
Sbjct: 10  RGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED 69

Query: 129 CGV 131
           C  
Sbjct: 70  CST 72

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 7e-05
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
           C +C     E  +DV + PCGH +  +CL   +E     CP C   +
Sbjct: 26  CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 6e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
           +CP+C E L     +     CG+ I + C   +R      CP C K  
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
           CP+C E         + LPC H     C+      +   CP+C   V
Sbjct: 8   CPICLEDP---SNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPV 50

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 8/47 (17%)

Query: 198 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 244
           C  C        +   +LPC HT+   CL    E     CPIC    
Sbjct: 9   CQQCQAEA----KCPKLLPCLHTLCSGCL----EASGMQCPICQAPW 47

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQ--YACPICSKSV 244
           +CP+C E +    ++ +   C H   K C+ ++    +    CP+C   +
Sbjct: 23  ECPICLELI----KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d2dkta2	56	RING finger and CHY zinc finger domain-containing	99.95
d2dkta1	74	RING finger and CHY zinc finger domain-containing	99.46
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.39
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.31
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.3
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.25
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.19
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.19
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.15
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.98
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.91
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.87
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.79
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.77
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.75
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.73
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.71
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.31
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.15
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	86.14
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	83.24
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	80.62

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=5e-30  Score=185.64  Aligned_cols=56  Identities=57%  Similarity=1.394  Sum_probs=54.1

Q ss_pred             ceeecCccccccCCCCCCccccCCCCcccccCCcceeeccCCCcceeccccCCccccC
Q 021794          134 GEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVE  191 (307)
Q Consensus       134 ~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~CiE  191 (307)
                      |+|||+||||||||  |+||||++|||||||++++||||++|++||+++|+++|+|+|
T Consensus         1 G~YfC~iC~l~ddd--k~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~l~~~H~CiE   56 (56)
T d2dkta2           1 GEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIE   56 (56)
T ss_dssp             CSEECSSSCCEECS--SSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred             CceECCcCCcccCC--CCcccCCCCCceeecCCccccccCccccccCcccCCCccccC
Confidence            78999999999885  999999999999999999999999999999999999999997

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=7.1e-15  Score=110.83  Aligned_cols=62  Identities=34%  Similarity=0.901  Sum_probs=51.6

Q ss_pred             hcccCCCcCCCcccccCceeEcCccCCeecCCccccccccCcCcCCcCCcccCcccccc-----------cccccccCCc
Q 021794           63 LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQ-----------VQQVCVNCGV  131 (307)
Q Consensus        63 ~~~~~~~~~GC~HY~R~Cki~aPCC~~~y~CR~CHde~~~~~~~~~~~~H~l~R~~v~e-----------v~~~C~nCg~  131 (307)
                      ++|+..+.+||+||+|+|+|+|++||++|+|+.||++..         .|+++|+++++           +...|.+||.
T Consensus         2 ~~~~~~~~~gC~HY~r~~~l~C~~Cg~~~~C~~C~~~lt---------~H~~~~k~~~~l~CH~Cg~~~~~~~~C~~Cgs   72 (74)
T d2dkta1           2 VRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKLQHAQQTCEDCST   72 (74)
T ss_dssp             CCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS---------SSCCCSSSCCCEEESSSCCEECSCSBCSSSCC
T ss_pred             ccCCCCCCCCCcccCcceEEEcCcCcCeeeCCCCCCccc---------ccccccccCCEEEeccCCCcccCCCcCCCCCC
Confidence            357788899999999999999999999999999999863         58888877765           5566777766


Q ss_pred             cc
Q 021794          132 CM  133 (307)
Q Consensus       132 ~f  133 (307)
                      .|
T Consensus        73 ~F   74 (74)
T d2dkta1          73 LF   74 (74)
T ss_dssp             BS
T ss_pred             CC
Confidence            55

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.9e-14  Score=99.52  Aligned_cols=50  Identities=28%  Similarity=0.634  Sum_probs=41.3

Q ss_pred             CCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       197 ~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +||||++++......+.+++|||.||..|+.+|++..+.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            69999998654444456679999999999999998766789999998753

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.31  E-value=4.2e-13  Score=95.45  Aligned_cols=49  Identities=29%  Similarity=0.719  Sum_probs=40.6

Q ss_pred             CCCCcccccccccCcceeEEc-CCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ...||||++. +..++.++.+ +|||.||..|+.+|++. +.+||+||+++.
T Consensus         5 ~~~C~ICl~~-~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~   54 (55)
T d1iyma_           5 GVECAVCLAE-LEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCC-CCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCeEECcc-ccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEeE
Confidence            3569999997 5455667666 69999999999999985 689999999874

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.1e-13  Score=97.09  Aligned_cols=52  Identities=23%  Similarity=0.578  Sum_probs=42.5

Q ss_pred             CCCCcccccccccCcce-eEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQD-VIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~-v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      +..||||++.++.+... +++++|||.||.+||.+|++..+.+||+||+.+..
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            57899999976655433 45679999999999999997666789999998753

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.25  E-value=1.4e-12  Score=95.75  Aligned_cols=49  Identities=27%  Similarity=0.636  Sum_probs=41.3

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ....||||++.+.+   +++.+||||.||..||.+|++. +.+||+||+++.+
T Consensus         4 ~~d~C~IC~~~~~~---~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~~   52 (68)
T d1chca_           4 VAERCPICLEDPSN---YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCS---CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCccCCcCccC---CcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchHh
Confidence            45679999997432   5678999999999999999986 6899999998764

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=4.5e-12  Score=100.56  Aligned_cols=55  Identities=27%  Similarity=0.454  Sum_probs=42.7

Q ss_pred             CCCCCCCcccccccccC--------------cceeEEcCCCCcccHHHHHHHHhcC----CCCCCCCCcccCc
Q 021794          192 GAMHHDCPVCCEYLFET--------------RQDVIVLPCGHTIHKNCLKEMREHH----QYACPICSKSVCD  246 (307)
Q Consensus       192 ~~~~~~CPIClE~lf~s--------------~~~v~~LpCGH~fH~~Cl~~wl~~~----~~~CPiCrks~~d  246 (307)
                      +..+..|+||++.|...              ...+.+++|||.||.+||.+||+..    +.+||+||..+..
T Consensus        22 ~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             ccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            34467899999987532              2335678999999999999999753    3589999988865

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.8e-12  Score=95.18  Aligned_cols=48  Identities=31%  Similarity=0.750  Sum_probs=40.5

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ...||||++. +.   .++++||||.||..||..|+...+.+||+||+.+..
T Consensus        23 ~~~C~IC~~~-~~---~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          23 FQLCKICAEN-DK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             TTBCTTTSSS-BC---CEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCCccCCCc-CC---CeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            4569999985 33   467899999999999999997656789999999874

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.3e-11  Score=94.69  Aligned_cols=51  Identities=18%  Similarity=0.501  Sum_probs=39.0

Q ss_pred             CCCCCccccccccc--------------CcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          194 MHHDCPVCCEYLFE--------------TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       194 ~~~~CPIClE~lf~--------------s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      .+.+|+||++.+..              ....++.++|||.||..||.+||+. +.+||+||+++.
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            35567777765422              1224677899999999999999985 689999999875

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.4e-10  Score=89.35  Aligned_cols=47  Identities=19%  Similarity=0.487  Sum_probs=39.8

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..||||+|. +.   .+++++|||+|+..||.+|++....+||+||.++..
T Consensus        24 l~C~IC~~~-~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          24 ISCQICEHI-LA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             TBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCCccCCcc-hh---cceecCCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            479999995 43   367889999999999999997666789999998764

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.2e-10  Score=89.63  Aligned_cols=46  Identities=24%  Similarity=0.786  Sum_probs=37.9

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcC--CCCCCCCCcccC
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC  245 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~  245 (307)
                      ..||||++. +.   .++.++|||+||..||..|+...  ...||+||+++.
T Consensus        22 l~CpIC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          22 LECPICLEL-IK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             TSCSSSCCC-CS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             cCCCccCch-hC---CeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            579999985 44   35678999999999999999753  357999999885

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=1.1e-09  Score=81.88  Aligned_cols=49  Identities=14%  Similarity=0.169  Sum_probs=41.4

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ..+..||||++ ++.   ++++++|||+|++.||.+|+...+.+||+||.++.
T Consensus         5 P~~l~CpIc~~-l~~---dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~   53 (80)
T d2c2la2           5 PDYLCGKISFE-LMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT   53 (80)
T ss_dssp             CSTTBCTTTCS-BCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             CccccCcCcCc-hhh---hhcccCCcCeecHHHHHHHHhcCCccCCCcccccc
Confidence            34678999998 454   35689999999999999999876788999998876

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=9.4e-10  Score=77.65  Aligned_cols=46  Identities=13%  Similarity=0.158  Sum_probs=37.4

Q ss_pred             CCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          197 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       197 ~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      .||||++. +.  ++++...|||+|+++||.+|++. +.+||+||+++..
T Consensus         2 ~C~Ic~~~-~~--~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKV-PR--RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSC-CS--SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred             CCccCCch-HH--hcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCH
Confidence            59999995 44  24555579999999999999986 5789999998763

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.77  E-value=2.7e-09  Score=79.33  Aligned_cols=50  Identities=16%  Similarity=0.472  Sum_probs=41.5

Q ss_pred             CCCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCc
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  246 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  246 (307)
                      ..+..||||++. +.   ++++++|||+|++.||.+|+..+...||+|+.++..
T Consensus         6 P~~l~CpIc~~~-m~---dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           6 PEYFRCPISLEL-MK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCC-CS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CccCCCcCcCch-hh---CceEccCCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            346789999995 44   356789999999999999998666789999998763

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.2e-10  Score=79.57  Aligned_cols=42  Identities=31%  Similarity=0.634  Sum_probs=34.9

Q ss_pred             CCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          196 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       196 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ..||||++. +.   .+++|||||+||..|+..|    +.+||+||+.+.
T Consensus         7 l~C~IC~~~-~~---~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~   48 (56)
T d1bora_           7 LRCQQCQAE-AK---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP   48 (56)
T ss_dssp             SSCSSSCSS-CB---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred             CCCcccCcc-cC---CCEEecCCCHHhHHHHHcC----CCcCcCCCCccc
Confidence            589999985 43   3568999999999999765    468999999886

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.2e-09  Score=82.90  Aligned_cols=45  Identities=22%  Similarity=0.594  Sum_probs=36.0

Q ss_pred             CCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          195 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       195 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ...||||++. |.  .++...+|||+||..||.+|+.   .+||+||.++.
T Consensus        22 ~l~C~IC~~~-~~--~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~   66 (97)
T d1jm7b_          22 LLRCSRCTNI-LR--EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW   66 (97)
T ss_dssp             TTSCSSSCSC-CS--SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred             cCCCccCCch-hh--cCceeCCCCCchhHHHHHHHHh---ccccccCCcCc
Confidence            4589999995 44  2444568999999999999985   46999998765

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.71  E-value=2.7e-09  Score=75.89  Aligned_cols=51  Identities=25%  Similarity=0.436  Sum_probs=37.9

Q ss_pred             CCCCCCCCcccccccccCcceeEEcCC-----CCcccHHHHHHHHhc-CCCCCCCCCcccC
Q 021794          191 EGAMHHDCPVCCEYLFETRQDVIVLPC-----GHTIHKNCLKEMREH-HQYACPICSKSVC  245 (307)
Q Consensus       191 E~~~~~~CPIClE~lf~s~~~v~~LpC-----GH~fH~~Cl~~wl~~-~~~~CPiCrks~~  245 (307)
                      |+.....|+||++.+ +.   ..+.||     +|.||..||.+|+.. .+.+||+||+++.
T Consensus         2 eded~~~C~IC~~~~-~~---~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           2 EDEDVPVCWICNEEL-GN---ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TTCSCCEETTTTEEC-SC---CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCCccCCccC-CC---ceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            445667899999863 32   223444     599999999999964 4578999998764

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.1e-07  Score=70.66  Aligned_cols=47  Identities=21%  Similarity=0.414  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhc-------CCCCCCCCC
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPICS  241 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-------~~~~CPiCr  241 (307)
                      ....||||++.+ ...+.+..++|||.||..|+.+|+..       ...+||.|+
T Consensus         4 ~~~~C~IC~~~~-~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEY-PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCC-BGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcc-cCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            357899999964 43445667799999999999999863       124699865

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.4e-06  Score=66.11  Aligned_cols=48  Identities=17%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             CCCCCCcccccccccCcceeEEcCCC-CcccHHHHHHHHhcCCCCCCCCCcccC
Q 021794          193 AMHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVC  245 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~  245 (307)
                      ..+..||||++ ++.   +++++||| |+|.+.||..||.. +.+||+|+.++.
T Consensus        20 P~~f~CPI~~~-lm~---dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~   68 (98)
T d1wgma_          20 CDEFLDPIMST-LMC---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT   68 (98)
T ss_dssp             CTTTBCTTTCS-BCS---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred             cHHhCCcCchh-HHH---HHHhcccccchhhHHHHHHHHHh-cCCccccccccc
Confidence            45789999998 454   47788876 58999999999985 679999999886

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=86.14  E-value=0.037  Score=40.22  Aligned_cols=67  Identities=22%  Similarity=0.447  Sum_probs=46.2

Q ss_pred             CCCCCcccccccccCcceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHhcCCCChhhhcCcee
Q 021794          194 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW  273 (307)
Q Consensus       194 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~dm~~~~~~lD~eia~~pmPeey~~~~~~  273 (307)
                      |+..||.|...|-...        ||+.+..|-..+...  -.||-|++++..+.                   +--.+.
T Consensus         1 m~~~CP~C~~eL~~~~--------~~~~C~~C~~~~~~~--a~CPdC~~~Le~Lk-------------------ACGAvd   51 (71)
T d2jnea1           1 MELHCPQCQHVLDQDN--------GHARCRSCGEFIEMK--ALCPDCHQPLQVLK-------------------ACGAVD   51 (71)
T ss_dssp             CCCBCSSSCSBEEEET--------TEEEETTTCCEEEEE--EECTTTCSBCEEEE-------------------ETTEEE
T ss_pred             CCCcCCCccCcccccC--------CCEehhhhhhhheeE--EeCCccccHHHHHH-------------------hccchh
Confidence            5678999987543211        677777776666543  57999998876532                   123589


Q ss_pred             EEcCCCCC---Ccccccee
Q 021794          274 ILCNDCGK---TSNVQFHV  289 (307)
Q Consensus       274 IlCnDC~~---~s~~~fH~  289 (307)
                      .+|+.|.+   ++.|.|++
T Consensus        52 YFC~~cn~LiSKkrv~f~~   70 (71)
T d2jnea1          52 YFCQHGHGLISKKRVEFVL   70 (71)
T ss_dssp             EEETTTTEEECTTTSEEEE
T ss_pred             hhhccCCceeEeeeEEEEe
Confidence            99999984   66777764

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.24  E-value=0.24  Score=32.40  Aligned_cols=45  Identities=24%  Similarity=0.651  Sum_probs=29.0

Q ss_pred             CCcccccccccCcceeEE-cCCCCcccHHHHHHHHhc---CCCCCCCCCcc
Q 021794          197 DCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSKS  243 (307)
Q Consensus       197 ~CPIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks  243 (307)
                      .|.||...  ......+. =.|...||..|++.-+..   ....||.|+..
T Consensus         2 ~C~vC~~~--~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKK--GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCS--SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCcCcCCC--CCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcCc
Confidence            47777642  22222221 268899999999986542   35679999853

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.62  E-value=0.13  Score=35.36  Aligned_cols=51  Identities=29%  Similarity=0.558  Sum_probs=33.4

Q ss_pred             CCCCCCcccccccccCcceeE-EcCCCCcccHHHHHHHH---h-cCCCCCCCCCccc
Q 021794          193 AMHHDCPVCCEYLFETRQDVI-VLPCGHTIHKNCLKEMR---E-HHQYACPICSKSV  244 (307)
Q Consensus       193 ~~~~~CPIClE~lf~s~~~v~-~LpCGH~fH~~Cl~~wl---~-~~~~~CPiCrks~  244 (307)
                      +....|+||.+. .+.....+ =-.|+..||..|+..-.   . ...|.||.|+...
T Consensus         4 ~~~~~C~~C~~~-~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~   59 (64)
T d1we9a_           4 GSSGQCGACGES-YAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SSCCCCSSSCCC-CCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCCcCcCcCCC-CCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcC
Confidence            456799999874 33322222 23789999999996421   1 1468999998643