Citrus Sinensis ID: 021852
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 306 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SU94 | 390 | Protein arginine N-methyl | yes | no | 1.0 | 0.784 | 0.859 | 1e-161 | |
| Q0J2C6 | 387 | Probable protein arginine | yes | no | 1.0 | 0.790 | 0.852 | 1e-160 | |
| A2Z0C0 | 387 | Probable protein arginine | N/A | no | 1.0 | 0.790 | 0.852 | 1e-160 | |
| O82210 | 366 | Probable protein arginine | no | no | 1.0 | 0.836 | 0.839 | 1e-155 | |
| Q5RGQ2 | 419 | Protein arginine N-methyl | yes | no | 1.0 | 0.730 | 0.591 | 1e-107 | |
| Q28F07 | 351 | Protein arginine N-methyl | yes | no | 1.0 | 0.871 | 0.588 | 1e-106 | |
| Q99873 | 361 | Protein arginine N-methyl | yes | no | 1.0 | 0.847 | 0.588 | 1e-106 | |
| Q8AV13 | 369 | Protein arginine N-methyl | N/A | no | 1.0 | 0.829 | 0.588 | 1e-106 | |
| Q63009 | 353 | Protein arginine N-methyl | yes | no | 1.0 | 0.866 | 0.584 | 1e-105 | |
| Q9JIF0 | 371 | Protein arginine N-methyl | yes | no | 1.0 | 0.824 | 0.584 | 1e-105 |
| >sp|Q9SU94|ANM11_ARATH Protein arginine N-methyltransferase 1.1 OS=Arabidopsis thaliana GN=PRMT11 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 567 bits (1460), Expect = e-161, Method: Compositional matrix adjust.
Identities = 263/306 (85%), Positives = 291/306 (95%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTK+YQNVIYQNKFL KDK+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+M
Sbjct: 85 MLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADM 144
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IV+ANGFS+VITVLKGKIEEIELP KVD+IISEWMGYFLLFENML++VLYARDKWL
Sbjct: 145 AKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFENMLDSVLYARDKWL 204
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V+ G+VLPDKASL+LTAIED+EYK+DKIEFWN+VYGFDMSCIKK+AMMEPLVDTVDQNQI
Sbjct: 205 VEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAMMEPLVDTVDQNQI 264
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VT+ +LLKTMDISKM GDASFTAPFKLVAQRNDYIHALVAYFDV+FT CHKL+GFSTGP
Sbjct: 265 VTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSFTMCHKLLGFSTGP 324
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
KSRATHWKQTVLYLEDVLTICEGE I+G+++V+PNKKNPRD+DI L YSL G+H ISR
Sbjct: 325 KSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDIDIKLSYSLNGQHCKISRT 384
Query: 301 QYYKMR 306
Q+YKMR
Sbjct: 385 QHYKMR 390
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain. Type I arginine methyltransferase active on both histones and non-histone proteins. Required for leaves and flowers development. Mediates the methylation of MBD7. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 5 |
| >sp|Q0J2C6|ANM1_ORYSJ Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=PRMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 564 bits (1453), Expect = e-160, Method: Compositional matrix adjust.
Identities = 261/306 (85%), Positives = 285/306 (93%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTKSYQNVI QN FLFKDK+VLDVGAGTGILSLFCAKAGA HVYA+ECSQMA+M
Sbjct: 82 MLKDVVRTKSYQNVITQNSFLFKDKIVLDVGAGTGILSLFCAKAGAKHVYAIECSQMADM 141
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IV+ NG+SNVITV+KGK+EEIELPV KVD+IISEWMGYFLLFENMLNTVLYARDKWL
Sbjct: 142 AKEIVKTNGYSNVITVIKGKVEEIELPVPKVDVIISEWMGYFLLFENMLNTVLYARDKWL 201
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
D G+VLPDKASL+LTAIEDAEYK+DKIEFWNNVYGFDM CIKKQAMMEPLVDTVD NQI
Sbjct: 202 ADGGVVLPDKASLHLTAIEDAEYKEDKIEFWNNVYGFDMRCIKKQAMMEPLVDTVDANQI 261
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTNCQLLKTMDISKM PGDASFT PFKLVA+RNDYIHALVAYF+V+FTKCHK+MGFSTGP
Sbjct: 262 VTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALVAYFNVSFTKCHKMMGFSTGP 321
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S+ATHWKQTVLYLEDVLTICEGE I+GS+TV PNKKNPRD+DI L Y+L G +SR
Sbjct: 322 RSKATHWKQTVLYLEDVLTICEGETITGSMTVTPNKKNPRDIDIKLCYALSGHRCQVSRT 381
Query: 301 QYYKMR 306
Q+YKMR
Sbjct: 382 QHYKMR 387
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2Z0C0|ANM1_ORYSI Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. indica GN=PRMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 564 bits (1453), Expect = e-160, Method: Compositional matrix adjust.
Identities = 261/306 (85%), Positives = 285/306 (93%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTKSYQNVI QN FLFKDK+VLDVGAGTGILSLFCAKAGA HVYA+ECSQMA+M
Sbjct: 82 MLKDVVRTKSYQNVITQNSFLFKDKIVLDVGAGTGILSLFCAKAGAKHVYAIECSQMADM 141
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IV+ NG+SNVITV+KGK+EEIELPV KVD+IISEWMGYFLLFENMLNTVLYARDKWL
Sbjct: 142 AKEIVKTNGYSNVITVIKGKVEEIELPVPKVDVIISEWMGYFLLFENMLNTVLYARDKWL 201
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
D G+VLPDKASL+LTAIEDAEYK+DKIEFWNNVYGFDM CIKKQAMMEPLVDTVD NQI
Sbjct: 202 ADGGVVLPDKASLHLTAIEDAEYKEDKIEFWNNVYGFDMRCIKKQAMMEPLVDTVDANQI 261
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTNCQLLKTMDISKM PGDASFT PFKLVA+RNDYIHALVAYF+V+FTKCHK+MGFSTGP
Sbjct: 262 VTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALVAYFNVSFTKCHKMMGFSTGP 321
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S+ATHWKQTVLYLEDVLTICEGE I+GS+TV PNKKNPRD+DI L Y+L G +SR
Sbjct: 322 RSKATHWKQTVLYLEDVLTICEGETITGSMTVTPNKKNPRDIDIKLCYALSGHRCQVSRT 381
Query: 301 QYYKMR 306
Q+YKMR
Sbjct: 382 QHYKMR 387
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O82210|ANM12_ARATH Probable protein arginine N-methyltransferase 1.2 OS=Arabidopsis thaliana GN=PRMT12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 257/306 (83%), Positives = 285/306 (93%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTKSYQ+VIY+NKFL KDK+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+
Sbjct: 61 MLKDVVRTKSYQDVIYKNKFLIKDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADT 120
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IV++NGFS+VITVLKGKIEEIELPV KVD+IISEWMGYFLL+ENML+TVLYAR+KWL
Sbjct: 121 AKEIVKSNGFSDVITVLKGKIEEIELPVPKVDVIISEWMGYFLLYENMLDTVLYARNKWL 180
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
VD GIVLPDKASLY+TAIEDA YKDDK+EFW++VYGFDMSCIK++A+ EPLVDTVD NQI
Sbjct: 181 VDGGIVLPDKASLYVTAIEDAHYKDDKVEFWDDVYGFDMSCIKRRAITEPLVDTVDGNQI 240
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VT+ +LLKTMDISKM GDASFTAPFKLVAQRND+IHALVAYFDV+FT CHK MGFSTGP
Sbjct: 241 VTDSKLLKTMDISKMAAGDASFTAPFKLVAQRNDHIHALVAYFDVSFTMCHKKMGFSTGP 300
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
KSRATHWKQTVLYLEDVLTICEGE I+GS+T+A NKKNPRDVDI L YSL G+H ISR
Sbjct: 301 KSRATHWKQTVLYLEDVLTICEGETITGSMTIAQNKKNPRDVDIKLSYSLNGQHCNISRT 360
Query: 301 QYYKMR 306
+YKMR
Sbjct: 361 HFYKMR 366
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RGQ2|ANM8B_DANRE Protein arginine N-methyltransferase 8-B OS=Danio rerio GN=prmt8b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/306 (59%), Positives = 230/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N +Y NK +FKDK+VLDVG+GTGILS+F AKAGA HVY +ECS ++
Sbjct: 114 MLKDEVRTLTYRNSMYHNKHIFKDKIVLDVGSGTGILSMFAAKAGAKHVYGIECSSISEY 173
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
+++I+++N +VIT+LKGK+EE ELPV +VDIIISEWMGY L +E+MLNTV+YARDKWL
Sbjct: 174 SEKIIKSNHLDSVITILKGKVEETELPVDQVDIIISEWMGYCLFYESMLNTVIYARDKWL 233
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
G + PD+A+LY+ AIED +YKD KI +W NVYGFDM+CI+ AMMEPLVD VD Q+
Sbjct: 234 KPGGFMFPDRATLYVVAIEDRQYKDFKIHWWENVYGFDMTCIRNVAMMEPLVDIVDPKQV 293
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D SFT+ F L QRNDY+HALV YF++ FTKCHK GFST P
Sbjct: 294 VTNSCLVKEVDIYTVKTEDLSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKTGFSTAP 353
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+ +THWKQTV YLED LT+ GE I GS+TV PN+ N RD+D + +G+ +
Sbjct: 354 DAPSTHWKQTVFYLEDYLTVRRGEEILGSITVRPNENNERDLDFTFELDFKGQLCDAAIS 413
Query: 301 QYYKMR 306
YKMR
Sbjct: 414 HDYKMR 419
|
Membrane-associated arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Able to mono- and dimethylate ews protein; however its precise role toward ews remains unclear as it still interacts with fully methylated ews. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q28F07|ANM1_XENTR Protein arginine N-methyltransferase 1 OS=Xenopus tropicalis GN=prmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/306 (58%), Positives = 233/306 (76%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 46 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDY 105
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL
Sbjct: 106 AIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWL 165
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 166 TPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 225
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDYIHALVAYF++ FT+CHK GFST P
Sbjct: 226 VTNACLIKEVDIYTVKVDDLTFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSP 285
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++++ PN KN RD+D + +G+ +S
Sbjct: 286 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCS 345
Query: 301 QYYKMR 306
Y+MR
Sbjct: 346 TDYRMR 351
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice (By similarity). Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q99873|ANM1_HUMAN Protein arginine N-methyltransferase 1 OS=Homo sapiens GN=PRMT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 56 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 115
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 116 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWL 175
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 176 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 235
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 236 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 295
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 296 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 355
Query: 301 QYYKMR 306
Y+MR
Sbjct: 356 TDYRMR 361
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q8AV13|ANM1A_XENLA Protein arginine N-methyltransferase 1-A OS=Xenopus laevis GN=prmt1-a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/306 (58%), Positives = 231/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 64 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDY 123
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL
Sbjct: 124 AIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWL 183
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 184 TPDGLIFPDRATLYITAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 243
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
V+N L+K +DI + D SFT+PF L +RNDYIHALVAYF++ FT+CHK GFST P
Sbjct: 244 VSNACLIKEVDIYTVKVDDLSFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSP 303
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D +G+ +S
Sbjct: 304 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMKPNAKNNRDLDFTFDIDFKGQLCELSCS 363
Query: 301 QYYKMR 306
Y+MR
Sbjct: 364 TDYRMR 369
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q63009|ANM1_RAT Protein arginine N-methyltransferase 1 OS=Rattus norvegicus GN=Prmt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 48 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 107
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 108 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL 167
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 168 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 227
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 228 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 287
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 288 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 347
Query: 301 QYYKMR 306
Y+MR
Sbjct: 348 TDYRMR 353
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q9JIF0|ANM1_MOUSE Protein arginine N-methyltransferase 1 OS=Mus musculus GN=Prmt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 66 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 125
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 126 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL 185
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 186 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 245
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 246 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 305
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 306 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 365
Query: 301 QYYKMR 306
Y+MR
Sbjct: 366 TDYRMR 371
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 306 | ||||||
| 255546199 | 387 | protein arginine n-methyltransferase 1, | 1.0 | 0.790 | 0.882 | 1e-165 | |
| 356520854 | 379 | PREDICTED: probable protein arginine N-m | 1.0 | 0.807 | 0.892 | 1e-165 | |
| 255647533 | 379 | unknown [Glycine max] | 1.0 | 0.807 | 0.892 | 1e-164 | |
| 363806956 | 376 | uncharacterized protein LOC100795951 [Gl | 1.0 | 0.813 | 0.885 | 1e-164 | |
| 118487693 | 384 | unknown [Populus trichocarpa] | 1.0 | 0.796 | 0.879 | 1e-162 | |
| 224122474 | 377 | arginine methyltransferease [Populus tri | 1.0 | 0.811 | 0.879 | 1e-162 | |
| 225444983 | 406 | PREDICTED: protein arginine N-methyltran | 1.0 | 0.753 | 0.879 | 1e-161 | |
| 297738697 | 350 | unnamed protein product [Vitis vinifera] | 1.0 | 0.874 | 0.879 | 1e-161 | |
| 190683457 | 385 | putative protein arginine N-methyltransf | 1.0 | 0.794 | 0.869 | 1e-161 | |
| 224091294 | 328 | arginine methyltransferease [Populus tri | 1.0 | 0.932 | 0.879 | 1e-160 |
| >gi|255546199|ref|XP_002514159.1| protein arginine n-methyltransferase 1, putative [Ricinus communis] gi|223546615|gb|EEF48113.1| protein arginine n-methyltransferase 1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 270/306 (88%), Positives = 296/306 (96%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTK+YQNVIYQNKFLFK+KVVLDVGAGTGILSLFCAKAGAAHVYAVECS MA+M
Sbjct: 82 MLKDVVRTKTYQNVIYQNKFLFKNKVVLDVGAGTGILSLFCAKAGAAHVYAVECSAMADM 141
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IVE+NGFSNV+TVLKGK+EE+ELPV KVDIIISEWMGYFLL+ENMLNTVLYARDKWL
Sbjct: 142 AKEIVESNGFSNVVTVLKGKVEELELPVAKVDIIISEWMGYFLLYENMLNTVLYARDKWL 201
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V+DGI+LPDKASL+LTAIEDAEYK+DKIEFWN VYGFDMSCIKKQAMMEPLVDTVDQNQ+
Sbjct: 202 VNDGILLPDKASLFLTAIEDAEYKEDKIEFWNRVYGFDMSCIKKQAMMEPLVDTVDQNQV 261
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTNCQLLKTMDISKM GDASFT PFKLVA+R+DYIHALVAYFDV+FT+CHKLMGFSTGP
Sbjct: 262 VTNCQLLKTMDISKMASGDASFTVPFKLVAERDDYIHALVAYFDVSFTRCHKLMGFSTGP 321
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+SRATHWKQTVLYLEDVLTICEGEAI+GS+TVAPNKKNPRD+DIM+KY+L GR A++R
Sbjct: 322 RSRATHWKQTVLYLEDVLTICEGEAITGSMTVAPNKKNPRDIDIMVKYALNGRRCAVTRT 381
Query: 301 QYYKMR 306
QYYKMR
Sbjct: 382 QYYKMR 387
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520854|ref|XP_003529075.1| PREDICTED: probable protein arginine N-methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 273/306 (89%), Positives = 293/306 (95%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRTK+YQNVIYQNKFLFK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+M
Sbjct: 74 MLKDSVRTKTYQNVIYQNKFLFKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADM 133
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IVEANG+SNV+TVLKGKIEEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWL
Sbjct: 134 AKEIVEANGYSNVVTVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWL 193
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
VD G+VLPDKASL+LTAIEDA+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI
Sbjct: 194 VDGGVVLPDKASLHLTAIEDADYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQI 253
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
TNCQLLKTMDISKM PGDASF APFKLVA+R+DYIHALVAYFDV+FTKCHKLMGFSTGP
Sbjct: 254 ATNCQLLKTMDISKMAPGDASFAAPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGP 313
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+SRATHWKQTVLYLEDVLT+CEGEAI GS+TVAPNKKNPRDVDIMLKYSL GR +SR+
Sbjct: 314 RSRATHWKQTVLYLEDVLTVCEGEAIVGSMTVAPNKKNPRDVDIMLKYSLNGRRCNVSRV 373
Query: 301 QYYKMR 306
QYYKMR
Sbjct: 374 QYYKMR 379
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647533|gb|ACU24230.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 273/306 (89%), Positives = 292/306 (95%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRTK+YQNVIYQNKFLFK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+M
Sbjct: 74 MLKDSVRTKTYQNVIYQNKFLFKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADM 133
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IVEANG+SNV+TVLKGKIEEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWL
Sbjct: 134 AKEIVEANGYSNVVTVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWL 193
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
VD G+VLPDKASL+LTAIEDA+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI
Sbjct: 194 VDGGVVLPDKASLHLTAIEDADYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQI 253
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
TNCQLLKTMDISKM PGDASF APFKLVA+R+DYIHALVAYFDV+FTKCHKLMGFSTGP
Sbjct: 254 ATNCQLLKTMDISKMAPGDASFAAPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGP 313
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+SRATHWKQTVLYLEDVLT+CEGEAI GS TVAPNKKNPRDVDIMLKYSL GR +SR+
Sbjct: 314 RSRATHWKQTVLYLEDVLTVCEGEAIVGSTTVAPNKKNPRDVDIMLKYSLNGRRCNVSRV 373
Query: 301 QYYKMR 306
QYYKMR
Sbjct: 374 QYYKMR 379
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363806956|ref|NP_001242055.1| uncharacterized protein LOC100795951 [Glycine max] gi|255639209|gb|ACU19903.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 271/306 (88%), Positives = 291/306 (95%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRTK+YQNVIYQN+FLFK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+M
Sbjct: 71 MLKDTVRTKTYQNVIYQNRFLFKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADM 130
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IVEANG+SNV+TVLKGKIEEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWL
Sbjct: 131 AKEIVEANGYSNVVTVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWL 190
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
VD G+VLPDKASL+LTAIED +YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI
Sbjct: 191 VDGGVVLPDKASLHLTAIEDTDYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQI 250
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
TNCQLLKTMDISKM PGDASFT PFKLVA+R+DYIHALVAYFDV+FTKCHKLMGFSTGP
Sbjct: 251 ATNCQLLKTMDISKMAPGDASFTVPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGP 310
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+SRATHWKQTVLYLEDVLTICEGEAI GS+ VAPNKKNPRDVDIMLKYSL GR +SR+
Sbjct: 311 RSRATHWKQTVLYLEDVLTICEGEAIVGSMAVAPNKKNPRDVDIMLKYSLNGRRCNVSRV 370
Query: 301 QYYKMR 306
QYYKMR
Sbjct: 371 QYYKMR 376
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118487693|gb|ABK95671.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 269/306 (87%), Positives = 289/306 (94%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTK+YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS MANM
Sbjct: 79 MLKDVVRTKTYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSHMANM 138
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IVE+NG+SNVITVLKGKIEEIELPV KVDIIISEWMGYFLLFENMLN+VLY RDKWL
Sbjct: 139 AKEIVESNGYSNVITVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSVLYTRDKWL 198
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V+DGIVLPD+ SLYLTAIEDAEYK+DKIEFWNNVYGFDM+CIKKQAM EPLVDTVDQNQI
Sbjct: 199 VNDGIVLPDQTSLYLTAIEDAEYKEDKIEFWNNVYGFDMTCIKKQAMGEPLVDTVDQNQI 258
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTNCQ LKTMDISKM GD SFTAPFKLVA+R+D+IHALVAYFDV+FTKCHK GFSTGP
Sbjct: 259 VTNCQKLKTMDISKMVSGDTSFTAPFKLVAERDDFIHALVAYFDVSFTKCHKFTGFSTGP 318
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+SRATHWKQTVLYLEDVLTIC+GEA+SGS+TVAPNKKNPRD+DIM+KYSL GR SR
Sbjct: 319 RSRATHWKQTVLYLEDVLTICQGEALSGSMTVAPNKKNPRDIDIMIKYSLNGRRCVASRT 378
Query: 301 QYYKMR 306
Q+YKMR
Sbjct: 379 QHYKMR 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122474|ref|XP_002330490.1| arginine methyltransferease [Populus trichocarpa] gi|222872424|gb|EEF09555.1| arginine methyltransferease [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 269/306 (87%), Positives = 289/306 (94%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTK+YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS MANM
Sbjct: 72 MLKDVVRTKTYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSHMANM 131
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IVE+NG+SNVITVLKGKIEEIELPV KVDIIISEWMGYFLLFENMLN+VLY RDKWL
Sbjct: 132 AKEIVESNGYSNVITVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSVLYTRDKWL 191
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V+DGIVLPD+ SLYLTAIEDAEYK+DKIEFWNNVYGFDM+CIKKQAM EPLVDTVDQNQI
Sbjct: 192 VNDGIVLPDQTSLYLTAIEDAEYKEDKIEFWNNVYGFDMTCIKKQAMGEPLVDTVDQNQI 251
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTNCQ LKTMDISKM GD SFTAPFKLVA+R+D+IHALVAYFDV+FTKCHK GFSTGP
Sbjct: 252 VTNCQKLKTMDISKMVSGDTSFTAPFKLVAERDDFIHALVAYFDVSFTKCHKFTGFSTGP 311
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+SRATHWKQTVLYLEDVLTIC+GEA+SGS+TVAPNKKNPRD+DIM+KYSL GR SR
Sbjct: 312 RSRATHWKQTVLYLEDVLTICQGEALSGSMTVAPNKKNPRDIDIMIKYSLNGRRCVASRT 371
Query: 301 QYYKMR 306
Q+YKMR
Sbjct: 372 QHYKMR 377
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444983|ref|XP_002282760.1| PREDICTED: protein arginine N-methyltransferase 1.1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 269/306 (87%), Positives = 289/306 (94%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTK+YQNVIY+NKFLFK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+M
Sbjct: 101 MLKDVVRTKTYQNVIYKNKFLFKNKVVLDVGAGTGILSLFCAKAGAKHVYAVECSHMADM 160
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IVE NGFS+VITV+KGK+EEI LPV +VDIIISEWMGYFLLFENMLNTVLYARDKWL
Sbjct: 161 AKEIVEVNGFSDVITVMKGKVEEIVLPVAQVDIIISEWMGYFLLFENMLNTVLYARDKWL 220
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V+DGIVLPDKASLYLTAIEDAEYK+DKIEFWN+VYGFDMSCIKKQAMMEPLVDTVDQNQI
Sbjct: 221 VNDGIVLPDKASLYLTAIEDAEYKEDKIEFWNSVYGFDMSCIKKQAMMEPLVDTVDQNQI 280
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTNCQLLKTMDISKM PGDASFTAPFKLVA R+DYIHALVAYFDV+FTKCHKL GFSTGP
Sbjct: 281 VTNCQLLKTMDISKMAPGDASFTAPFKLVASRDDYIHALVAYFDVSFTKCHKLTGFSTGP 340
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+SRATHWKQTVLYLEDVLTICEGE + GS+TVA NKKNPRDVDIM+KYS G+ +SR
Sbjct: 341 RSRATHWKQTVLYLEDVLTICEGETVVGSMTVAQNKKNPRDVDIMIKYSFNGQRCQVSRT 400
Query: 301 QYYKMR 306
QYYKMR
Sbjct: 401 QYYKMR 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738697|emb|CBI27942.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 269/306 (87%), Positives = 289/306 (94%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTK+YQNVIY+NKFLFK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+M
Sbjct: 45 MLKDVVRTKTYQNVIYKNKFLFKNKVVLDVGAGTGILSLFCAKAGAKHVYAVECSHMADM 104
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IVE NGFS+VITV+KGK+EEI LPV +VDIIISEWMGYFLLFENMLNTVLYARDKWL
Sbjct: 105 AKEIVEVNGFSDVITVMKGKVEEIVLPVAQVDIIISEWMGYFLLFENMLNTVLYARDKWL 164
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V+DGIVLPDKASLYLTAIEDAEYK+DKIEFWN+VYGFDMSCIKKQAMMEPLVDTVDQNQI
Sbjct: 165 VNDGIVLPDKASLYLTAIEDAEYKEDKIEFWNSVYGFDMSCIKKQAMMEPLVDTVDQNQI 224
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTNCQLLKTMDISKM PGDASFTAPFKLVA R+DYIHALVAYFDV+FTKCHKL GFSTGP
Sbjct: 225 VTNCQLLKTMDISKMAPGDASFTAPFKLVASRDDYIHALVAYFDVSFTKCHKLTGFSTGP 284
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+SRATHWKQTVLYLEDVLTICEGE + GS+TVA NKKNPRDVDIM+KYS G+ +SR
Sbjct: 285 RSRATHWKQTVLYLEDVLTICEGETVVGSMTVAQNKKNPRDVDIMIKYSFNGQRCQVSRT 344
Query: 301 QYYKMR 306
QYYKMR
Sbjct: 345 QYYKMR 350
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|190683457|gb|ACE82047.1| putative protein arginine N-methyltransferase 1 [Musa acuminata AAA Group] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/306 (86%), Positives = 290/306 (94%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTK+YQNVIYQN FLFK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+M
Sbjct: 80 MLKDVVRTKTYQNVIYQNSFLFKNKVVLDVGAGTGILSLFCAKAGAKHVYAVECSLMADM 139
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IV+ NG+SNVITVLKGK+EEIELPV VD+IISEWMGYFLLFENMLNTVLYARDKWL
Sbjct: 140 AKEIVQTNGYSNVITVLKGKVEEIELPVAHVDVIISEWMGYFLLFENMLNTVLYARDKWL 199
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
++GIVLPDKASLYLTAIEDAEYK+DKIEFWNNVYGFDMSCI+KQAM+EPLVDTVDQNQI
Sbjct: 200 NNNGIVLPDKASLYLTAIEDAEYKEDKIEFWNNVYGFDMSCIEKQAMIEPLVDTVDQNQI 259
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTNCQLLKTMDISKM PGD SF APFKLVA+RNDYIHALVAYFDV+FTKCHKL+GFSTGP
Sbjct: 260 VTNCQLLKTMDISKMAPGDVSFMAPFKLVAERNDYIHALVAYFDVSFTKCHKLVGFSTGP 319
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S+ATHWKQTVLYLEDVLTICEGEA+ GSLTV PN++NPRDVDIMLKYSL G+H +SR
Sbjct: 320 RSKATHWKQTVLYLEDVLTICEGEAVVGSLTVEPNERNPRDVDIMLKYSLNGQHCQVSRT 379
Query: 301 QYYKMR 306
Q+YKMR
Sbjct: 380 QHYKMR 385
|
Source: Musa acuminata AAA Group Species: Musa acuminata Genus: Musa Family: Musaceae Order: Zingiberales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091294|ref|XP_002309219.1| arginine methyltransferease [Populus trichocarpa] gi|222855195|gb|EEE92742.1| arginine methyltransferease [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 269/306 (87%), Positives = 288/306 (94%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRTK+YQNVI+QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS +ANM
Sbjct: 23 MLKDGVRTKTYQNVIFQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSHIANM 82
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IVE+NGFSNVITVLKGKIE+IELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWL
Sbjct: 83 AKEIVESNGFSNVITVLKGKIEDIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWL 142
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V DGIVLPDKASLYLTAIEDAEYK+DKIEFWNNVYGFDM+CIKKQAM EPLVDTVDQNQI
Sbjct: 143 VSDGIVLPDKASLYLTAIEDAEYKEDKIEFWNNVYGFDMTCIKKQAMGEPLVDTVDQNQI 202
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTNCQLLKTMDISKM GD SFT PFKLVA+R+DYIHALVAYFDV+FTKCHKLMGFSTGP
Sbjct: 203 VTNCQLLKTMDISKMVSGDTSFTVPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGP 262
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+SRATHWKQTVLYLEDVLTIC+GEA+ GS+TVAPNKKNPRD+DI + YSL GR SR
Sbjct: 263 RSRATHWKQTVLYLEDVLTICQGEALIGSMTVAPNKKNPRDIDITINYSLNGRRCVASRT 322
Query: 301 QYYKMR 306
Q+YKMR
Sbjct: 323 QHYKMR 328
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 306 | ||||||
| TAIR|locus:2134328 | 390 | PRMT11 "arginine methyltransfe | 1.0 | 0.784 | 0.859 | 2.6e-143 | |
| TAIR|locus:2051995 | 366 | PRMT1A "protein arginine methy | 1.0 | 0.836 | 0.839 | 9.2e-139 | |
| ZFIN|ZDB-GENE-030131-7791 | 419 | prmt8b "protein arginine methy | 0.993 | 0.725 | 0.597 | 4.5e-98 | |
| UNIPROTKB|F1SKY6 | 379 | PRMT8 "Uncharacterized protein | 1.0 | 0.807 | 0.584 | 1.5e-97 | |
| UNIPROTKB|Q28F07 | 351 | prmt1 "Protein arginine N-meth | 1.0 | 0.871 | 0.588 | 2e-97 | |
| UNIPROTKB|Q5E949 | 353 | HRMT1L2 "HMT1 hnRNP methyltran | 1.0 | 0.866 | 0.588 | 2.5e-97 | |
| UNIPROTKB|F6XFY9 | 371 | PRMT1 "Uncharacterized protein | 1.0 | 0.824 | 0.588 | 2.5e-97 | |
| UNIPROTKB|E9PKG1 | 325 | PRMT1 "Protein arginine N-meth | 1.0 | 0.941 | 0.588 | 2.5e-97 | |
| UNIPROTKB|H7C2I1 | 371 | PRMT1 "Protein arginine N-meth | 1.0 | 0.824 | 0.588 | 2.5e-97 | |
| UNIPROTKB|Q99873 | 361 | PRMT1 "Protein arginine N-meth | 1.0 | 0.847 | 0.588 | 2.5e-97 |
| TAIR|locus:2134328 PRMT11 "arginine methyltransferase 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
Identities = 263/306 (85%), Positives = 291/306 (95%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTK+YQNVIYQNKFL KDK+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+M
Sbjct: 85 MLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADM 144
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IV+ANGFS+VITVLKGKIEEIELP KVD+IISEWMGYFLLFENML++VLYARDKWL
Sbjct: 145 AKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFENMLDSVLYARDKWL 204
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V+ G+VLPDKASL+LTAIED+EYK+DKIEFWN+VYGFDMSCIKK+AMMEPLVDTVDQNQI
Sbjct: 205 VEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAMMEPLVDTVDQNQI 264
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VT+ +LLKTMDISKM GDASFTAPFKLVAQRNDYIHALVAYFDV+FT CHKL+GFSTGP
Sbjct: 265 VTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSFTMCHKLLGFSTGP 324
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
KSRATHWKQTVLYLEDVLTICEGE I+G+++V+PNKKNPRD+DI L YSL G+H ISR
Sbjct: 325 KSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDIDIKLSYSLNGQHCKISRT 384
Query: 301 QYYKMR 306
Q+YKMR
Sbjct: 385 QHYKMR 390
|
|
| TAIR|locus:2051995 PRMT1A "protein arginine methyltransferase 1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1358 (483.1 bits), Expect = 9.2e-139, P = 9.2e-139
Identities = 257/306 (83%), Positives = 285/306 (93%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKDVVRTKSYQ+VIY+NKFL KDK+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+
Sbjct: 61 MLKDVVRTKSYQDVIYKNKFLIKDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADT 120
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK+IV++NGFS+VITVLKGKIEEIELPV KVD+IISEWMGYFLL+ENML+TVLYAR+KWL
Sbjct: 121 AKEIVKSNGFSDVITVLKGKIEEIELPVPKVDVIISEWMGYFLLYENMLDTVLYARNKWL 180
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
VD GIVLPDKASLY+TAIEDA YKDDK+EFW++VYGFDMSCIK++A+ EPLVDTVD NQI
Sbjct: 181 VDGGIVLPDKASLYVTAIEDAHYKDDKVEFWDDVYGFDMSCIKRRAITEPLVDTVDGNQI 240
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VT+ +LLKTMDISKM GDASFTAPFKLVAQRND+IHALVAYFDV+FT CHK MGFSTGP
Sbjct: 241 VTDSKLLKTMDISKMAAGDASFTAPFKLVAQRNDHIHALVAYFDVSFTMCHKKMGFSTGP 300
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
KSRATHWKQTVLYLEDVLTICEGE I+GS+T+A NKKNPRDVDI L YSL G+H ISR
Sbjct: 301 KSRATHWKQTVLYLEDVLTICEGETITGSMTIAQNKKNPRDVDIKLSYSLNGQHCNISRT 360
Query: 301 QYYKMR 306
+YKMR
Sbjct: 361 HFYKMR 366
|
|
| ZFIN|ZDB-GENE-030131-7791 prmt8b "protein arginine methyltransferase 8b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 184/308 (59%), Positives = 233/308 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N +Y NK +FKDK+VLDVG+GTGILS+F AKAGA HVY +ECS ++
Sbjct: 114 MLKDEVRTLTYRNSMYHNKHIFKDKIVLDVGSGTGILSMFAAKAGAKHVYGIECSSISEY 173
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
+++I+++N +VIT+LKGK+EE ELPV +VDIIISEWMGY L +E+MLNTV+YARDKWL
Sbjct: 174 SEKIIKSNHLDSVITILKGKVEETELPVDQVDIIISEWMGYCLFYESMLNTVIYARDKWL 233
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
G + PD+A+LY+ AIED +YKD KI +W NVYGFDM+CI+ AMMEPLVD VD Q+
Sbjct: 234 KPGGFMFPDRATLYVVAIEDRQYKDFKIHWWENVYGFDMTCIRNVAMMEPLVDIVDPKQV 293
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D SFT+ F L QRNDY+HALV YF++ FTKCHK GFST P
Sbjct: 294 VTNSCLVKEVDIYTVKTEDLSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKTGFSTAP 353
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR--HSAIS 298
+ +THWKQTV YLED LT+ GE I GS+TV PN+ N RD+D + +G+ +AIS
Sbjct: 354 DAPSTHWKQTVFYLEDYLTVRRGEEILGSITVRPNENNERDLDFTFELDFKGQLCDAAIS 413
Query: 299 RIQYYKMR 306
YKMR
Sbjct: 414 HD--YKMR 419
|
|
| UNIPROTKB|F1SKY6 PRMT8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 179/306 (58%), Positives = 231/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N +Y NK +FKDKVVLDVG+GTGILS+F AKAGA V+ +ECS +++
Sbjct: 74 MLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDY 133
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
+++I++AN N+IT+ KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTV++ARDKWL
Sbjct: 134 SEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWL 193
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
G++ PD+A+LY+ AIED +YKD KI +W NVYGFDM+CI+ AM EPLVD VD Q+
Sbjct: 194 KPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQV 253
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + + SFT+ F L QRNDY+HALV YF++ FTKCHK MGFST P
Sbjct: 254 VTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAP 313
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+ THWKQTV YLED LT+ GE I G++++ PN KN RD+D + +G+ S
Sbjct: 314 DAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVS 373
Query: 301 QYYKMR 306
YYKMR
Sbjct: 374 NYYKMR 379
|
|
| UNIPROTKB|Q28F07 prmt1 "Protein arginine N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 180/306 (58%), Positives = 233/306 (76%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 46 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDY 105
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL
Sbjct: 106 AIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWL 165
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 166 TPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 225
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDYIHALVAYF++ FT+CHK GFST P
Sbjct: 226 VTNACLIKEVDIYTVKVDDLTFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSP 285
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++++ PN KN RD+D + +G+ +S
Sbjct: 286 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCS 345
Query: 301 QYYKMR 306
Y+MR
Sbjct: 346 TDYRMR 351
|
|
| UNIPROTKB|Q5E949 HRMT1L2 "HMT1 hnRNP methyltransferase-like 2 isoform 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 180/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 48 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 107
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 108 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWL 167
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 168 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 227
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 228 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 287
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 288 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 347
Query: 301 QYYKMR 306
Y+MR
Sbjct: 348 TDYRMR 353
|
|
| UNIPROTKB|F6XFY9 PRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 180/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 66 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 125
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 126 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWL 185
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 186 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 245
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 246 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 305
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 306 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 365
Query: 301 QYYKMR 306
Y+MR
Sbjct: 366 TDYRMR 371
|
|
| UNIPROTKB|E9PKG1 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 180/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 20 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 79
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 80 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWL 139
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 140 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 199
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 200 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 259
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 260 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 319
Query: 301 QYYKMR 306
Y+MR
Sbjct: 320 TDYRMR 325
|
|
| UNIPROTKB|H7C2I1 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 180/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 66 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 125
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 126 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWL 185
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 186 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 245
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 246 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 305
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 306 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 365
Query: 301 QYYKMR 306
Y+MR
Sbjct: 366 TDYRMR 371
|
|
| UNIPROTKB|Q99873 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 180/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 56 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 115
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 116 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWL 175
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 176 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 235
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 236 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 295
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 296 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 355
Query: 301 QYYKMR 306
Y+MR
Sbjct: 356 TDYRMR 361
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q54EF2 | ANM1_DICDI | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5522 | 1.0 | 0.8973 | yes | no |
| Q9URX7 | ANM1_SCHPO | 2, ., 1, ., 1, ., - | 0.5529 | 0.9575 | 0.8617 | yes | no |
| Q5RGQ2 | ANM8B_DANRE | 2, ., 1, ., 1, ., - | 0.5915 | 1.0 | 0.7303 | yes | no |
| Q9JIF0 | ANM1_MOUSE | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5849 | 1.0 | 0.8247 | yes | no |
| Q9SU94 | ANM11_ARATH | 2, ., 1, ., 1, ., 1, 2, 5 | 0.8594 | 1.0 | 0.7846 | yes | no |
| Q99873 | ANM1_HUMAN | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5882 | 1.0 | 0.8476 | yes | no |
| Q63009 | ANM1_RAT | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5849 | 1.0 | 0.8668 | yes | no |
| Q8AV13 | ANM1A_XENLA | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5882 | 1.0 | 0.8292 | N/A | no |
| Q28F07 | ANM1_XENTR | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5882 | 1.0 | 0.8717 | yes | no |
| O82210 | ANM12_ARATH | 2, ., 1, ., 1, ., - | 0.8398 | 1.0 | 0.8360 | no | no |
| Q0J2C6 | ANM1_ORYSJ | 2, ., 1, ., 1, ., - | 0.8529 | 1.0 | 0.7906 | yes | no |
| Q6VRB0 | ANM1B_XENLA | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5816 | 1.0 | 0.8717 | N/A | no |
| A2Z0C0 | ANM1_ORYSI | 2, ., 1, ., 1, ., - | 0.8529 | 1.0 | 0.7906 | N/A | no |
| P38074 | HMT1_YEAST | 2, ., 1, ., 1, ., - | 0.5119 | 0.9509 | 0.8362 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| PRMT901 | SubName- Full=Putative uncharacterized protein; (378 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.I.4832.1 | hypothetical protein (422 aa) | • | 0.496 | ||||||||
| estExt_fgenesh4_pg.C_LG_XV0629 | hypothetical protein (314 aa) | • | 0.493 | ||||||||
| gw1.86.17.1 | hypothetical protein (573 aa) | • | 0.455 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 306 | |||
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-13 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-09 | |
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 4e-09 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 1e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-08 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-08 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 4e-08 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 4e-07 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 9e-07 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 2e-06 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 2e-06 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 3e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 3e-06 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 5e-06 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 6e-06 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 9e-06 | |
| COG1189 | 245 | COG1189, COG1189, Predicted rRNA methylase [Transl | 2e-05 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 3e-05 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 5e-05 | |
| TIGR01444 | 144 | TIGR01444, fkbM_fam, methyltransferase, FkbM famil | 6e-05 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 7e-05 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 7e-05 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 9e-05 | |
| COG1092 | 393 | COG1092, COG1092, Predicted SAM-dependent methyltr | 1e-04 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 1e-04 | |
| pfam03602 | 183 | pfam03602, Cons_hypoth95, Conserved hypothetical p | 2e-04 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 2e-04 | |
| COG2520 | 341 | COG2520, COG2520, Predicted methyltransferase [Gen | 4e-04 | |
| PRK14896 | 258 | PRK14896, ksgA, 16S ribosomal RNA methyltransferas | 5e-04 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 5e-04 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 6e-04 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 7e-04 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 0.001 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 0.001 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 0.002 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 0.002 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 0.003 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.004 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 0.004 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-13
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI-E 85
VLD+G GTG L+L A A V V+ S +A + A ++ + VLKG EE+
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
D+IIS L E++ + AR L G+++
Sbjct: 62 EADESFDVIIS-DPPLHHLVEDLARFLEEARRL-LKPGGVLV 101
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 20 FLFKDKVVLDVGAGTGILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 77
+ K +LD+GAG G L L A + A + VE + A MA++ V N I V+
Sbjct: 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100
Query: 78 KGKIEEIE--LPVTKVDIIIS 96
+ I+E L D+II
Sbjct: 101 EADIKEFLKALVFASFDLIIC 121
|
Length = 248 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 4e-09
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMAN 59
+L+DV R + + I + + D+GAG+GILS+ A A A V A+E + A
Sbjct: 14 LLRDVERLAVFTSAIAE----VAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRAR 68
Query: 60 MAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN---MLNTVLYAR 116
+A++ + G N V+ G + + D++I E + L+ E ++N VL
Sbjct: 69 LAEENLHVPGDVN-WEVVVGDARDYD--FENADVVICEMLDTALIEEKQVPVINAVL--- 122
Query: 117 DKWLVDDGIVLPDKA 131
++L D ++P +
Sbjct: 123 -EFLRYDPTIIPQEV 136
|
Length = 252 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 1e-08
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 77
K + K VLDVG G+GIL++ AK GA V AV+ A A++ E NG + +
Sbjct: 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLP 174
Query: 78 KGKIEEIELPVTKVDIII 95
+G K D+I+
Sbjct: 175 QGD--------LKADVIV 184
|
Length = 250 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK 80
VLD+G GTG L++ A+ A V V+ S +M +A++ + IT ++G
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-ITFVQGD 59
Query: 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
+ + D + G +L+ + L G ++
Sbjct: 60 APDALDLLEGFDAVFI--GGGGGDLLELLDALA----SLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-08
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 21 LFKDKVVLDVGAGTGILSLFCA-KAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVL 77
L VLD+G GTG L+ A K G A V ++ S + AK+ + G+ NV +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENV-EFI 59
Query: 78 KGKIEEIE---LPVTKVDIIIS 96
+G IEE+ L D++IS
Sbjct: 60 QGDIEELPQLQLEDNSFDVVIS 81
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-08
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 24 DKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 81
VLD GAG+G L A+AG A V VE + A +A++ + G + + V+ G
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 82 EEI-ELPVTKVDIII-----SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
E+ ELP D+++ G ++ + L A + L G+++
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-07
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 77
+ + VLDVG G+GIL++ K GA V V+ +A AK+ E NG + V
Sbjct: 156 SLVKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVY 215
Query: 78 KGKIEEIELPVTKVDIII 95
+LP K D+++
Sbjct: 216 LPG----DLPEGKADVVV 229
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-07
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 80
DK +LD+G G+G +++ AK G A V AV+ S A +A++ E NG V+ V
Sbjct: 110 LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL 169
Query: 81 IEEIELPVTKVDIIIS 96
E + K D+I+S
Sbjct: 170 FEPLR---GKFDLIVS 182
|
Length = 280 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEE 83
K VLD+GAGTGIL++ A GA+ V AV+ + +A+ E G +E
Sbjct: 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---------GDVEF 97
Query: 84 IELPVTKVD 92
+ V+
Sbjct: 98 VVADVSDFR 106
|
Length = 198 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGK 80
+ D+GAGTG +++ A AG + V A+E + + ++ G N+ V++G
Sbjct: 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNL-EVVEGD 92
Query: 81 IEEIELPVTKVDII 94
E + D I
Sbjct: 93 APEALPDLPSPDAI 106
|
Length = 187 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 26 VVLDVGAGTGILSLFCAKA-GA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82
VLD+G+G G A+ G V V+ + +M A+ G++NV G+IE
Sbjct: 80 TVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLGEIE 138
Query: 83 EIELPVTKVDIIIS 96
+ + VD+IIS
Sbjct: 139 ALPVADNSVDVIIS 152
|
Length = 272 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-06
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 85
+LD+G GTG + A+AG + V V+ S+ +AK+ + G + + ++
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58
Query: 86 LPVTKVDIIISEWMGYFLLFE 106
D++I
Sbjct: 59 FEEGSFDLVIC-AGLSLDYLS 78
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 77
K L K K VLDVG G+GIL++ AK GA V V+ A A++ NG ++
Sbjct: 158 KLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217
Query: 78 KGKIEEIELPVTKVDIII 95
+ E D+I+
Sbjct: 218 GFLLLE-VPENGPFDVIV 234
|
Length = 300 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-06
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 28 LDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 86
LDVG GTG+L+ A+ G A V V+ +M +A++ + G E++
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-------APRKFVVGDAEDLPF 53
Query: 87 PVTKVDIIISEWM 99
P D+++S +
Sbjct: 54 PDESFDVVVSSLV 66
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 9e-06
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 80
VLD+G G G+L AK V V+ + A A+ + ANG N
Sbjct: 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDL 90
Query: 81 IEEIELPVTKVDIIIS 96
+E K D+IIS
Sbjct: 91 YSAVE--PGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE 53
+ K KVVLD+G+ TG + + GA HVYAV+
Sbjct: 75 ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVD 109
|
Length = 245 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITV-L 77
KDK V+DVG G+GILS+ K GAA V ++ A++ E N S+ + V L
Sbjct: 156 LDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 215
Query: 78 KGKIEEIELPVTKVDIII 95
+ IE D+I+
Sbjct: 216 IYLEQPIEGK---ADVIV 230
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 17 QNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVI 74
+ K +F VLD+G GTG L+ K A A + + M AK + N +
Sbjct: 28 KEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSEN-----V 82
Query: 75 TVLKGKIEEIELPVTKVDIIIS 96
+ G E++ L + D+I+S
Sbjct: 83 QFICGDAEKLPLEDSSFDLIVS 104
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-05
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 26 VVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITV---LKGK 80
VV+DVGA G SL+ A+ GA V A E + ++ V+ N NV+ + + +
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60
Query: 81 IEEIELPVT 89
E+E V+
Sbjct: 61 DGELEFNVS 69
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-05
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 80
VLD+G G+G ++L AK A V AV+ S A +A++ G NV L+
Sbjct: 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNV-EFLQSD 145
Query: 81 IEEIELPVTKVDIIIS 96
E LP K D+I+S
Sbjct: 146 WFE-PLPGGKFDLIVS 160
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 79
L + VLD+ G G L AK V+ VE S A++ ANG NV + G
Sbjct: 291 LAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGIDNV-EFIAG 348
Query: 80 KIEEI 84
EE
Sbjct: 349 DAEEF 353
|
Length = 432 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-05
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 80
+ VLD+G G+G ++L AK A V AV+ S A +A++ + + V L+G
Sbjct: 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARV-EFLQGD 166
Query: 81 IEEIELPVTKVDIIIS 96
E LP + D+I+S
Sbjct: 167 WFE-PLPGGRFDLIVS 181
|
Length = 275 |
| >gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS 71
K VL++ + TG S+ A GA+ V +V+ S+ A A++ E NG
Sbjct: 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD 266
|
Length = 393 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 81
+LD G G G LS+ A+ G A V A + S QM A++ G + IT G +
Sbjct: 63 TGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL 121
Query: 82 EEI 84
E +
Sbjct: 122 ESL 124
|
Length = 230 |
| >gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 29/138 (21%)
Query: 4 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQ 63
D VR ++ N++ F VLD+ AG+G L L GAA V VE + A
Sbjct: 26 DRVR-EALFNIL-APYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKDK---KAVA 80
Query: 64 IVEAN----GFSNVITVLKGKIEEIELPVTK----VDIIISEWMGYFL-------LFENM 108
++ N G VL+ L + D++ FL L E
Sbjct: 81 TLKENLEALGLEGETAVLRNDAARALLRLAGKGPPFDLV-------FLDPPYAKGLIEEA 133
Query: 109 LNTVLYARDKWLVDDGIV 126
L + A + WL + ++
Sbjct: 134 LELL--AENGWLNPNALI 149
|
Length = 183 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHV------YAVECSQMANMAKQIVEANGFSN 72
K VL+VG G+GI+++ AK G V YAVEC AK + N N
Sbjct: 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVEC------AKCNAKLNNIRN 72
|
Length = 188 |
| >gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 77
+ + + + VLD+ AG G S+ AK G VYA++ + A K+ + N + +
Sbjct: 184 ELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPI 243
Query: 78 KGKIEEIELPVTKVDIIISEWMGYF 102
G E+ + D II MG
Sbjct: 244 LGDAREVAPELGVADRII---MGLP 265
|
Length = 341 |
| >gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVLKG 79
VL++G G G L+ AK A VYA+E ++A + + NV +++G
Sbjct: 27 DTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRD--DEIAAGNV-EIIEG 82
Query: 80 KIEEIELPVTKVDIIIS 96
+++LP + + ++S
Sbjct: 83 DALKVDLP--EFNKVVS 97
|
Length = 258 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 77
K K K VLD G GTG+LS+ AK G A V AV+ S QM MA+ + + +
Sbjct: 51 KDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFE 109
Query: 78 KGKIEEIE 85
+ +
Sbjct: 110 VNDLLSLC 117
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 77
+ VL+ G G+G L+ + A+A HV E A A++ + G + +T+
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK 151
Query: 78 KGKIEEIELPVTKVDIII 95
G + E VD +
Sbjct: 152 LGDVREGIDE-EDVDAVF 168
|
Length = 256 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 27 VLDVGAGTGILSLFCAKAGA-AHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEI 84
+LD+G G+G ++L A A V AV+ S A +A++ E N + + ++ + E
Sbjct: 118 ILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE- 176
Query: 85 ELPVTKVDIIIS 96
L K+DII+S
Sbjct: 177 PLAGQKIDIIVS 188
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 18 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM-AKQIVEANGFSNVITV 76
+F VLDVG G GILS A+ G A V ++ S+ AK +G + I
Sbjct: 54 LRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN--IDY 110
Query: 77 LKGKIEEIELPVTKVDIIIS 96
+ +E++ + D++
Sbjct: 111 RQATVEDLASAGGQFDVVTC 130
|
Length = 243 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA 58
VLD+ G+G L++ A AGA V AV+ S+ A
Sbjct: 40 VLDLCTGSGALAVAAAAAGAGSVTAVDISRRA 71
|
Length = 223 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.002
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIE 85
VLD+G+G G + + AHV+ V+ C +M N+AK N I I + +
Sbjct: 56 VLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKD 112
Query: 86 LPVTKVDIIISEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 143
P D+I S L + + L Y KWL +GI+L I D Y
Sbjct: 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCY---KWLKPNGILL----------ITD--Y 157
Query: 144 KDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC--QLLKTMDIS 193
DKIE W+ F K++ + P+ + D ++ +C Q + DIS
Sbjct: 158 CADKIENWDE--EFKAYIKKRKYTLIPIQEYGD---LIKSCNFQNVVAKDIS 204
|
Length = 263 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 85
+LD+G G G L+++ A+ V V S+ A++ + A G + + V + E
Sbjct: 76 LLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE 135
Query: 86 LPVTKVDIIIS----EWMG---YFLLFENMLNTVLYARDKWLVDDGIVL 127
D I+S E +G Y F+ + L G +L
Sbjct: 136 ---EPFDRIVSVGMFEHVGKENYDDFFKKV--------YALLKPGGRML 173
|
Length = 283 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 20 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVL 77
+ VLDV GTG ++L AK G V ++ M +A++ ++ G NV V+
Sbjct: 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV 107
Query: 78 KGKIEEIELP 87
G E + P
Sbjct: 108 -GDAENLPFP 116
|
Length = 238 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.004
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 28 LDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85
LD+G GTG L +A V+ S A + + A G + + V ++ I+
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 126
L D+++ L VL + L G++
Sbjct: 61 LDPGSFDVVV---ASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.004
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSN 72
I + + K VLD+GAG+G++++ A+AGAA V A + + +Q + N +N
Sbjct: 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAAD---IDPWLEQAIRLNAAAN 125
Query: 73 VITVLKGKIEEIELPVTKVDIII 95
+++L + I P D+++
Sbjct: 126 GVSILFTHADLIGSPP-AFDLLL 147
|
Length = 218 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 306 | |||
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 100.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 100.0 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 99.96 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.95 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.79 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.74 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.73 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.7 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.65 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.65 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.64 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.63 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.62 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.62 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.62 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.62 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.62 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.61 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.61 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.61 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.6 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.59 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.59 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.58 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.58 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.57 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.56 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.53 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.53 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.53 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.52 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.52 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.52 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.52 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.52 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.51 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.51 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.5 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.48 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.48 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.47 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.46 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.46 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.46 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.46 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.46 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.46 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.45 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.45 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.45 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.45 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.45 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.45 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.44 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.44 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.43 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.43 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.42 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.42 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.42 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.42 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.4 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.4 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.39 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.39 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.37 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.37 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.37 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.36 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.36 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.36 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.36 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.36 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.36 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.35 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.35 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.35 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.35 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.35 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.34 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.34 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.34 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.34 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.33 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.32 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.32 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.32 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.32 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.32 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.32 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.31 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.3 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.3 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.3 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.3 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.3 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.29 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.29 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.28 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.28 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.28 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.27 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.27 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.27 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.27 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.27 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.26 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.26 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.26 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.26 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.26 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.25 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.25 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.25 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.25 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.25 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.25 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.24 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.23 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.23 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.22 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.21 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.21 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.21 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.2 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.2 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.2 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.2 | |
| PLN02476 | 278 | O-methyltransferase | 99.2 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.19 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.19 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.18 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.18 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.17 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.17 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.16 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.15 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.15 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.14 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.12 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.1 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.09 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.09 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.09 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.07 | |
| PLN02366 | 308 | spermidine synthase | 99.07 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.06 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.05 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.04 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.04 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.03 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.01 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.01 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.99 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.98 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.98 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.94 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.93 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.92 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.9 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.9 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.9 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.88 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.87 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.86 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.85 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.85 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.82 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.8 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.8 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.79 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.77 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.76 | |
| PLN02823 | 336 | spermine synthase | 98.74 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.74 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.73 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.73 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.72 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.7 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.68 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.68 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.67 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.66 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.66 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.65 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.64 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.64 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.63 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.63 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.62 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.61 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.61 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.6 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.6 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.59 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.57 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.55 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.54 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.53 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.53 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.5 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.49 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.49 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.48 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.45 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.43 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.39 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.39 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.38 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.37 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.36 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.35 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.33 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.32 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.32 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.28 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.26 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.24 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.2 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.2 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.18 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.16 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.15 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.13 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.1 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.09 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.08 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.05 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.02 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.0 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.0 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.93 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.86 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.86 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.85 | |
| PHA01634 | 156 | hypothetical protein | 97.84 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.77 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.76 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.73 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.7 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.69 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.68 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.67 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.62 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.59 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.58 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.49 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.49 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.45 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.38 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.23 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.23 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.16 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.14 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 97.13 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.07 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.05 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.02 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.01 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.99 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.94 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.87 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.87 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.86 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.83 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.68 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.34 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.33 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.28 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.27 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.25 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.21 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.13 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.98 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.96 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.95 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.91 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.9 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.75 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.62 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.44 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 95.4 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.36 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.35 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 95.29 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.22 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.91 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.68 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.68 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 94.58 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.58 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 94.48 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.39 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.08 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 94.06 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 93.98 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.96 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.89 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.8 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 93.76 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.68 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 93.57 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 93.56 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.42 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 93.4 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 93.31 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 93.19 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.07 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.03 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 92.71 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 92.67 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 92.66 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.43 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 92.39 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 92.34 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.08 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 91.99 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 91.93 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 91.92 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 91.79 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.45 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 91.29 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 91.18 | |
| PRK13699 | 227 | putative methylase; Provisional | 90.65 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 90.2 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 90.08 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.06 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 89.91 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 89.73 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 89.48 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 89.31 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 89.27 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.18 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 88.72 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 88.71 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 88.59 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 88.48 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 88.15 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 87.68 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 87.63 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.55 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 87.5 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 87.48 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 87.47 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 87.43 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 87.25 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 87.13 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 87.13 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 87.09 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 86.88 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 86.79 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 86.66 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 86.59 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 86.3 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 85.93 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 85.73 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 85.61 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 85.48 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 85.35 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 85.11 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.92 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 84.92 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 84.86 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 84.75 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 84.63 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 84.35 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 84.34 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 84.31 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 83.99 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 83.9 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 83.69 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 83.58 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 83.47 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 83.41 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 83.22 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 83.14 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 82.93 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 82.85 | |
| PLN02494 | 477 | adenosylhomocysteinase | 82.49 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.48 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.47 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 82.35 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 82.27 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 82.27 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 82.26 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 82.18 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 82.17 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 82.1 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 81.99 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 81.86 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 81.85 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 81.79 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 81.69 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 81.41 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 81.24 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 81.2 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 81.11 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 80.71 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 80.52 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 80.22 |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-69 Score=464.55 Aligned_cols=306 Identities=63% Similarity=1.045 Sum_probs=299.4
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
||+|.+|+++|+++|.++.++.++++|||+|||||++++++|++|+++|+|+|.|++++.|++.+..|++.+.|+++++.
T Consensus 38 ML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gk 117 (346)
T KOG1499|consen 38 MLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGK 117 (346)
T ss_pred HHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhccccccCCCCch
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 160 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 160 (306)
++++.+|.+++|+|+||||||+++.|.++..++.++.++|+|||.++|+.++++++++++..+....+.||.++||||++
T Consensus 118 vEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdms 197 (346)
T KOG1499|consen 118 VEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDMS 197 (346)
T ss_pred eEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchhhhhhcCccccccccchh
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceEEEEEEEEEEEecCCC--ceeEEec
Q 021852 161 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCH--KLMGFST 238 (306)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~--~~~~lst 238 (306)
++.....++|+++.+++.+++++|+.+.++|+.++..+++.++.+|++.+.+++.+|||++|||+.|..+. ..+.+||
T Consensus 198 ~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST 277 (346)
T KOG1499|consen 198 CIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHAFVAYFDVEFTGCHGKKRLGFST 277 (346)
T ss_pred hhhhhhhcccceeccChhHhcccceeeEEeeeeeeeccceeeccceEEEEccCceEEEEEEEEEEeeccCCCCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977 6899999
Q ss_pred CCCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEcce-eeeeeceeEEEeC
Q 021852 239 GPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR-HSAISRIQYYKMR 306 (306)
Q Consensus 239 ~p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 306 (306)
+|.++.|||+|+||+|++|+.|++|+.|.+++.+++|+.++|++++.++|+.+|+ ...++.+..|+||
T Consensus 278 ~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~~~~~~~~~~~~~~~~~y~~~ 346 (346)
T KOG1499|consen 278 SPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLSLNFKGQGLCSFSESDSYPMR 346 (346)
T ss_pred CCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEEEecCCccccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999 8888999999997
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=340.28 Aligned_cols=288 Identities=40% Similarity=0.654 Sum_probs=262.5
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
|+.|.+|+..|.+||..+...++++.|||+|||+|++++++|++|+++|||+|.|+|+++|++.++.|.+.++|++|.+.
T Consensus 155 MmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GK 234 (517)
T KOG1500|consen 155 MMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGK 234 (517)
T ss_pred HHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccc---hhcccc--ccC
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD---KIEFWN--NVY 155 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~---~~~~w~--~~~ 155 (306)
++++.+| +++|+|++|+||+.+.+|.+++..+.+. ++|+|.|.++|....++++|+.++.+.-+ +.+||. +.|
T Consensus 235 iEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fy 312 (517)
T KOG1500|consen 235 IEDIELP-EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFY 312 (517)
T ss_pred cccccCc-hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccc
Confidence 9999998 9999999999999999999999999988 99999999999999999999999876643 456886 579
Q ss_pred CCCchhhhhh----hcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCC-ceeeeEEEEEeecceEEEEEEEEEEEecCC
Q 021852 156 GFDMSCIKKQ----AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA-SFTAPFKLVAQRNDYIHALVAYFDVTFTKC 230 (306)
Q Consensus 156 g~~~~~~~~~----~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~ 230 (306)
|.|++.+... .+.+|.++.++++.++..+. ...+||.....+++ ....+++|.+...|.+||+++|||+.|++.
T Consensus 313 GVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~sv-~h~~dF~~~kEedlh~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS 391 (517)
T KOG1500|consen 313 GVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKSV-FHVIDFLNMKEEDLHEIDIPLKFHALQCGRIHGLAFWFDVLFDGS 391 (517)
T ss_pred cccchhhhhhhhhhhhccccccccccceeeccch-HhhhhhhhcccchheeecccceehhhhhcceeeeeeEEEEEeccc
Confidence 9999887644 35679999999877766655 57889999988888 456788999999999999999999999986
Q ss_pred CceeEEecCCCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEc
Q 021852 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ 291 (306)
Q Consensus 231 ~~~~~lst~p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (306)
.-.+.+||+|..+.+||.|....|+.||.|++|++|++++.+-.++.+..+++|.++.+..
T Consensus 392 ~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~LiA~~~QSY~i~i~l~~~~~ 452 (517)
T KOG1500|consen 392 TVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLIANSRQSYDITITLSAKMT 452 (517)
T ss_pred eEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeeeeEEEEEccccceeEEEEEEeeee
Confidence 5567899999999999999999999999999999999999999999998888887766554
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=351.62 Aligned_cols=268 Identities=33% Similarity=0.475 Sum_probs=217.0
Q ss_pred CCChHHHHHHHHHHHhcccCC--------CCCEEEEEcCCCcHHHHHHHHcC-----CCEEEEEech-HHHHHHHHHHHH
Q 021852 2 LKDVVRTKSYQNVIYQNKFLF--------KDKVVLDVGAGTGILSLFCAKAG-----AAHVYAVECS-QMANMAKQIVEA 67 (306)
Q Consensus 2 l~D~~R~~~~~~ai~~~~~~~--------~~~~VLDlG~G~G~l~~~~a~~g-----~~~v~~iD~s-~~~~~a~~~~~~ 67 (306)
-+|.+|++.|++||.++.... ++++|||+|||+|.|++++++++ +.+|||+|.+ .+...+++.+++
T Consensus 157 E~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~ 236 (448)
T PF05185_consen 157 EKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA 236 (448)
T ss_dssp CC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh
Confidence 489999999999997643221 36799999999999999998875 6799999999 455556677799
Q ss_pred cCCCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccch
Q 021852 68 NGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDK 147 (306)
Q Consensus 68 ~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~ 147 (306)
|++.++|+++++|++++.+| +++|+||||+||+++.+|.. +..++++.|+|||||++||+.+++|++|+.++.++.+.
T Consensus 237 n~w~~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nEl~-pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~ 314 (448)
T PF05185_consen 237 NGWGDKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNELS-PECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEV 314 (448)
T ss_dssp TTTTTTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTTSH-HHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHH
T ss_pred cCCCCeEEEEeCcccCCCCC-CceeEEEEeccCCccccccC-HHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHH
Confidence 99999999999999999887 79999999999999988844 56789999999999999999999999999999887765
Q ss_pred hccccccCCCCchhhhhhhcCCceEEeeCCCCccCCC-eEEEEEEcCCCC---CCCCceeeeEEEEEeecceEEEEEEEE
Q 021852 148 IEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC-QLLKTMDISKMG---PGDASFTAPFKLVAQRNDYIHALVAYF 223 (306)
Q Consensus 148 ~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p-~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~g~~~g~~~wf 223 (306)
...|. ...++.|++..+.+...++++ ..+++|++.+.. .++..+...++|.+.++|.+|||++||
T Consensus 315 ~~~~~-----------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwF 383 (448)
T PF05185_consen 315 RNWWN-----------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWF 383 (448)
T ss_dssp HHHHG-----------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEE
T ss_pred Hhhcc-----------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEEEEEEE
Confidence 44332 344677888888888889999 999999998766 356677889999999999999999999
Q ss_pred EEEecCCCceeEEecCCCC----CCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEE
Q 021852 224 DVTFTKCHKLMGFSTGPKS----RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKY 288 (306)
Q Consensus 224 ~~~l~~~~~~~~lst~p~~----~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 288 (306)
++.|++ ++.|||+|.. +.+||+|++|||++|+.|++||+|+++++++.+ .+-+.+++.+
T Consensus 384 d~~Ly~---~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~---~~~vWYEW~v 446 (448)
T PF05185_consen 384 DAVLYG---DVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTD---DRKVWYEWSV 446 (448)
T ss_dssp EEEEEC---SEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECC---STCEEEEEEE
T ss_pred EEEeeC---CeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcC---CCcEEEEEEE
Confidence 999998 8999999987 578999999999999999999999999999865 4457787754
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=253.05 Aligned_cols=285 Identities=24% Similarity=0.303 Sum_probs=225.8
Q ss_pred CChHHHHHHHHHHHhcccCC-----C--CCEEEEEcCCCcHHHHHHHHc-----CCCEEEEEech-HHHHHHHHHHHHcC
Q 021852 3 KDVVRTKSYQNVIYQNKFLF-----K--DKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECS-QMANMAKQIVEANG 69 (306)
Q Consensus 3 ~D~~R~~~~~~ai~~~~~~~-----~--~~~VLDlG~G~G~l~~~~a~~-----g~~~v~~iD~s-~~~~~a~~~~~~~~ 69 (306)
+|.+++..|++||.++.... . -.+|+-+|+|.|.+.....++ ..-++|++|.+ .++...+ +.+...
T Consensus 340 kD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~-~~n~~~ 418 (649)
T KOG0822|consen 340 KDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ-NRNFEC 418 (649)
T ss_pred ccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh-hhchhh
Confidence 68999999999998653322 1 347899999999886555431 12379999988 4444443 355667
Q ss_pred CCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhc
Q 021852 70 FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIE 149 (306)
Q Consensus 70 ~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~ 149 (306)
|.++|+++.+|++++..|.++.|++|||++|+|..+|... ..++.+.++|||+|+.||+..+.|+.|+.++.++++...
T Consensus 419 W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSP-ECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a 497 (649)
T KOG0822|consen 419 WDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSP-ECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKA 497 (649)
T ss_pred hcCeeEEEeccccccCCchhhccchHHHhhccccCccCCH-HHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHh
Confidence 8889999999999998555899999999999999888664 588888999999999999999999999999888765322
Q ss_pred cccccCCCCchhhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCC-CCCCceeeeEEEEEeecceEEEEEEEEEEEec
Q 021852 150 FWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMG-PGDASFTAPFKLVAQRNDYIHALVAYFDVTFT 228 (306)
Q Consensus 150 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~ 228 (306)
. .+ .-.++.|++..+.....|++|+.+|+|.+.+.. .-+..+....+|++.++|.+|||++||++.|+
T Consensus 498 ~-~~----------~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~~LY 566 (649)
T KOG0822|consen 498 T-ND----------PNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDAVLY 566 (649)
T ss_pred c-CC----------ccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecchhhhhhhh
Confidence 1 00 124567889998888899999999999998763 22345677889999999999999999999999
Q ss_pred CCCceeEEecCCCCCC---CCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEE-----cceeeee--e
Q 021852 229 KCHKLMGFSTGPKSRA---THWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL-----QGRHSAI--S 298 (306)
Q Consensus 229 ~~~~~~~lst~p~~~~---~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~ 298 (306)
+ +|.||+.|...+ .+|++++||+.+|+.|.+|++|++++|++.+ ..-+.+++..+- .-...++ .
T Consensus 567 k---dI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d---~~kVWYEW~v~~~~~l~~~~~s~iHN~ 640 (649)
T KOG0822|consen 567 K---DIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVD---STKVWYEWSVESFIYLMKPSSSEIHNP 640 (649)
T ss_pred h---eeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeC---CceeEEEEEeeeeecccCCCcccccCC
Confidence 9 999999998654 3999999999999999999999999999864 344777765542 2222233 6
Q ss_pred ceeEEEeC
Q 021852 299 RIQYYKMR 306 (306)
Q Consensus 299 ~~~~~~~~ 306 (306)
++++|.||
T Consensus 641 ~Grsy~~~ 648 (649)
T KOG0822|consen 641 NGRSYSMR 648 (649)
T ss_pred CCceeecC
Confidence 77888886
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=219.15 Aligned_cols=285 Identities=18% Similarity=0.208 Sum_probs=204.7
Q ss_pred CChHHHHHHHHHHHhcccC---------------------------------CCCCEEEEEcCCCcHHHHHH---HH-cC
Q 021852 3 KDVVRTKSYQNVIYQNKFL---------------------------------FKDKVVLDVGAGTGILSLFC---AK-AG 45 (306)
Q Consensus 3 ~D~~R~~~~~~ai~~~~~~---------------------------------~~~~~VLDlG~G~G~l~~~~---a~-~g 45 (306)
+|.++++.|.+||.++... ....+|+-+|+|.|.|...+ ++ .|
T Consensus 647 KDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~~g 726 (1072)
T PTZ00357 647 RDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALG 726 (1072)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHHcC
Confidence 6899999999999865411 01136999999999885443 33 34
Q ss_pred CC-EEEEEech-HHHHHHHHH-HHHcCC-------CCeEEEEEceeeeecCCC-----------ceeeEEEEcccccccC
Q 021852 46 AA-HVYAVECS-QMANMAKQI-VEANGF-------SNVITVLKGKIEEIELPV-----------TKVDIIISEWMGYFLL 104 (306)
Q Consensus 46 ~~-~v~~iD~s-~~~~~a~~~-~~~~~~-------~~~v~~~~~d~~~~~~~~-----------~~~D~iv~~~~~~~~~ 104 (306)
.+ +|+|||.+ +.+.....+ .....| .++|++|..|++++..+. +++|+||||++|+|..
T Consensus 727 vkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGD 806 (1072)
T PTZ00357 727 VRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGD 806 (1072)
T ss_pred CcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhccccc
Confidence 33 89999988 644444333 233456 346999999999986431 3799999999999998
Q ss_pred CcchHHHHHHHHhhcccC----Ce-------EEEecCceEEEEEeeccccccchhccccccCCCCch-----hhhhhhcC
Q 021852 105 FENMLNTVLYARDKWLVD----DG-------IVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS-----CIKKQAMM 168 (306)
Q Consensus 105 ~~~~~~~~l~~~~~~L~p----~G-------~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~-----~~~~~~~~ 168 (306)
+|... ..|+.+.++||+ +| +.||+.++.|+.|+.++.+++..... ...|+... ......++
T Consensus 807 NELSP-ECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~--~~~gltvP~p~c~~~haa~fe 883 (1072)
T PTZ00357 807 NELSP-ECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA--AVKGLTVPPPGCHDHHAALNH 883 (1072)
T ss_pred ccCCH-HHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh--hhcccccCCccccccchhhcc
Confidence 88664 477777888875 55 59999999999999999887653211 01111110 00112345
Q ss_pred CceEEeeCCCCccCCCeEEEEEEcCCCCCC-----------------CCceeeeEEEEEeecceEEEEEEEEEEEecCCC
Q 021852 169 EPLVDTVDQNQIVTNCQLLKTMDISKMGPG-----------------DASFTAPFKLVAQRNDYIHALVAYFDVTFTKCH 231 (306)
Q Consensus 169 ~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~ 231 (306)
.+++..+.....|+.|+++|+|.+.+.... +..+.+.++|++..++.+|||++||++.|++..
T Consensus 884 t~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAvLYkDV 963 (1072)
T PTZ00357 884 TLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVLYQSA 963 (1072)
T ss_pred cceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEEeecCC
Confidence 678888887778899999999999764421 225678899999999999999999999999821
Q ss_pred --ceeEEecCCCCCCC---CceeEEEecC---CeeeccCCC---------EEEEEEEEeeCCCCCeeeEEEEEEEEc
Q 021852 232 --KLMGFSTGPKSRAT---HWKQTVLYLE---DVLTICEGE---------AISGSLTVAPNKKNPRDVDIMLKYSLQ 291 (306)
Q Consensus 232 --~~~~lst~p~~~~~---~W~q~~~~l~---~p~~v~~g~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (306)
..+.|||.|...+. +|++.+|||+ ++..++.|| .|.+++.++.+-...| +.++++.-.+
T Consensus 964 t~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~r-VwYew~v~~~ 1039 (1072)
T PTZ00357 964 TAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQR-VWYEWSVTYG 1039 (1072)
T ss_pred CccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeeccccccce-EEEEEEEeec
Confidence 12789999976543 9999999999 667777887 7888888776655555 5666655444
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-28 Score=214.30 Aligned_cols=250 Identities=23% Similarity=0.334 Sum_probs=193.2
Q ss_pred CCCChHHHHHHHHHHHhcccCC------CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCe
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLF------KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNV 73 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~------~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~ 73 (306)
||+|..||.+|+.+|++..... ....|||+|+|||+++++|+++|+..|+|+|.= +|.+.|++...+||++++
T Consensus 38 Ml~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~Sdk 117 (636)
T KOG1501|consen 38 MLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDK 117 (636)
T ss_pred HhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccc
Confidence 9999999999999998643322 223799999999999999999999999999976 999999999999999999
Q ss_pred EEEEEceeeeecCC-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhcccc
Q 021852 74 ITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWN 152 (306)
Q Consensus 74 v~~~~~d~~~~~~~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~ 152 (306)
|++|+...+++... ..+.|+++.+.++.-+.+|+.++.+-++..+++++|...+|.++++|++++++..+.. |.
T Consensus 118 I~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~-----~n 192 (636)
T KOG1501|consen 118 INVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCN-----LN 192 (636)
T ss_pred eeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhh-----hh
Confidence 99999999998743 4579999999998889999999999999999999999999999999999999976543 22
Q ss_pred ccCCCCchhhhhhhcCC---------------ceEEeeC-CCCccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceE
Q 021852 153 NVYGFDMSCIKKQAMME---------------PLVDTVD-QNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYI 216 (306)
Q Consensus 153 ~~~g~~~~~~~~~~~~~---------------~~~~~~~-~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~ 216 (306)
+........-....... .+.+..+ ..++|+++..+|.+||+............+...+..+|++
T Consensus 193 dl~~~~~~ts~gv~~~p~~lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~va~~Sg~~ 272 (636)
T KOG1501|consen 193 DLRNNEAKTSDGVRLVPPGLESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPPVAVHSGPL 272 (636)
T ss_pred ccccccccccCCcccCCCccccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCcccccccch
Confidence 21111110000000000 0111111 3467999999999999964433322223445567889999
Q ss_pred EEEEEEEEEEecCCCceeEEecCCCCCC---------CCceeEEEecCC
Q 021852 217 HALVAYFDVTFTKCHKLMGFSTGPKSRA---------THWKQTVLYLED 256 (306)
Q Consensus 217 ~g~~~wf~~~l~~~~~~~~lst~p~~~~---------~~W~q~~~~l~~ 256 (306)
..+..||+.+++. .+...+..+|.+.. .||.|+++++++
T Consensus 273 ~~~l~wwdi~mD~-~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 273 RSNLLWWDISMDQ-FGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred hheeeeeeeeecc-CcceEEEecceecCCChHHHHHHHHHHHhcCCChh
Confidence 9999999999995 55677888887532 499999988873
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=146.95 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=101.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
+.|++++.......+|.+|||+|||||.+++.+++ .|..+|+++|+| +|++.|++++...+..+ ++++++|++++++
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf 115 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF 115 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC
Confidence 45666666555566899999999999999999999 566799999999 99999999999888866 9999999999999
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++||++.+. +.+.+-.+.+.+|.++.|+|||||+++
T Consensus 116 ~D~sFD~vt~~---fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 116 PDNSFDAVTIS---FGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CCCccCEEEee---ehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 99999999974 667777899999999999999999876
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=124.80 Aligned_cols=104 Identities=29% Similarity=0.362 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eeecCCCceeeEEEEcc-
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISEW- 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~D~iv~~~- 98 (306)
|+.+|||+|||+|.+++.+++ .+..+|+|+|+| +|++.|++++.+.+..++++++++|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 678999999999999999999 456699999999 89999999998888888999999999 334333 6899999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.+........+++.+.+.|+|||+++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEE
Confidence 22323333567788999999999999998
|
... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=130.00 Aligned_cols=131 Identities=26% Similarity=0.381 Sum_probs=114.8
Q ss_pred CCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 2 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 2 l~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
|.|..|...|..+|.+... ..+.|+|+|+|.+++.+|++ +.+|+|+|.+ ..++.|.+++.-+|. ++++++.+|
T Consensus 15 L~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gD 88 (252)
T COG4076 15 LRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGD 88 (252)
T ss_pred hhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecc
Confidence 7899999999999986533 78999999999999999998 8899999999 789999999988888 579999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeecc
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 141 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~ 141 (306)
+.+..+ +.+|+|+||+++..+..|...+ ++.++..+|+.++.+||+....-+.|+..+
T Consensus 89 A~~y~f--e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 89 ARDYDF--ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred cccccc--cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 999876 6799999999999888887776 566666799999999999887777777643
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-17 Score=138.60 Aligned_cols=113 Identities=22% Similarity=0.280 Sum_probs=81.8
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
|++.+.+.....+|.+|||+|||||.++..+++. + ..+|+++|+| +|++.|+++++..+.. +|+++++|+++++++
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFP 113 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-
T ss_pred HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCC
Confidence 4444444445678899999999999999999884 3 3599999999 9999999999988875 799999999999999
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++||+|++. +.+.+-.+.+..++++.|+|||||.++
T Consensus 114 d~sfD~v~~~---fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 114 DNSFDAVTCS---FGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp TT-EEEEEEE---S-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred CCceeEEEHH---hhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 9999999985 344455678899999999999999987
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-16 Score=130.54 Aligned_cols=103 Identities=26% Similarity=0.296 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+|.+|||+|||-|.++..+|+.|+ .|+|+|.+ ++++.|+..+.++++ .+++....++++....++||+|+|.-|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEV- 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEV- 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhH-
Confidence 5899999999999999999999995 99999999 899999999999998 488888888888755689999999544
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
+.+-.+...++.++.+++||||.++.++
T Consensus 134 --lEHv~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 134 --LEHVPDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred --HHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence 3344677889999999999999998443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=124.42 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=89.3
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
.+.+++.....+.++.+|||+|||+|.+++.+++ .+..+|+++|.+ +|++.|+++++.+++++ ++++++|+.++..
T Consensus 32 ~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~- 109 (187)
T PRK00107 32 HILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ- 109 (187)
T ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-
Confidence 3333333333445689999999999999998887 456699999999 89999999999999865 9999999988765
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||+|+++.+ ..++.++..+.++|+|||.++
T Consensus 110 ~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv 142 (187)
T PRK00107 110 EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFL 142 (187)
T ss_pred CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEE
Confidence 579999999642 356788899999999999987
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=133.64 Aligned_cols=108 Identities=28% Similarity=0.395 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
++.-.++|.+. ..++++|||+|||||+|++.+++.|+++|+|+|++ ..++.|+++++.|++.+++.+. ...+ .
T Consensus 148 T~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~--~ 221 (295)
T PF06325_consen 148 TRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED--L 221 (295)
T ss_dssp HHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC--T
T ss_pred HHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc--c
Confidence 34455666643 67889999999999999999999999999999999 8899999999999999877663 2222 2
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+||+|++|.+. ..+..+...+.++|+|||.+|
T Consensus 222 ~~~~~dlvvANI~~------~vL~~l~~~~~~~l~~~G~lI 256 (295)
T PF06325_consen 222 VEGKFDLVVANILA------DVLLELAPDIASLLKPGGYLI 256 (295)
T ss_dssp CCS-EEEEEEES-H------HHHHHHHHHCHHHEEEEEEEE
T ss_pred ccccCCEEEECCCH------HHHHHHHHHHHHhhCCCCEEE
Confidence 34899999999742 355667888889999999998
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-15 Score=129.13 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=90.9
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHH--HcCCCCeEEEEEceeeee
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVE--ANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~--~~~~~~~v~~~~~d~~~~ 84 (306)
.|++.+.+...+.++.+|||+|||+|.++..+++. + ..+|+|+|+| +|++.|+++.. ..+...+++++++|++++
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 34444444445678899999999999999988874 4 3599999999 99999987653 222234799999999999
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++++||+|++... +.+..+...++.++.|.|||||.++
T Consensus 140 p~~~~sfD~V~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 140 PFDDCYFDAITMGYG---LRNVVDRLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred CCCCCCEeEEEEecc---cccCCCHHHHHHHHHHHcCcCcEEE
Confidence 888889999998643 3344577889999999999999987
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-15 Score=124.12 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=90.4
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.+.....++.+|||+|||+|..+..+++.|. +|+|+|.| +|++.+++.++.+++. +++++..|+.+++++ ++||+
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~ 98 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYDF 98 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcCE
Confidence 33334456778999999999999999999865 99999999 8999999999888884 588999998877665 67999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..+.+++ .......++..+.++|+|||.++
T Consensus 99 I~~~~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 99 ILSTVVLMFL-EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred EEEecchhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 9998654443 44567889999999999999965
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-15 Score=118.61 Aligned_cols=101 Identities=32% Similarity=0.396 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHH-Hc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCA-KA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a-~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~ 96 (306)
.++.+|||+|||+|.++..++ +. +..+++|+|+| +|++.|++.++.+++. +++++++|+.+++ ++ ++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 467899999999999999999 43 35699999999 9999999999999996 7999999999976 45 79999999
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+. .+......+++.+.++|+++|.++
T Consensus 80 ~~~l---~~~~~~~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 80 NGVL---HHFPDPEKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp ESTG---GGTSHHHHHHHHHHHHEEEEEEEE
T ss_pred cCch---hhccCHHHHHHHHHHHcCCCcEEE
Confidence 7543 344677789999999999999997
|
... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-15 Score=132.83 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||||||+|.++..+++.|+ +|+|+|.+ +|++.|++++...+...+++++.+++++++.+.++||+|++..+.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4677999999999999999998765 89999999 999999988776665557999999999887666799999995443
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ +-.+...++.++.++|||||.++
T Consensus 209 e---Hv~d~~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 209 E---HVANPAEFCKSLSALTIPNGATV 232 (322)
T ss_pred H---hcCCHHHHHHHHHHHcCCCcEEE
Confidence 3 33567889999999999999998
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.2e-15 Score=127.25 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=95.3
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.+.+...+.+|++|||||||.|.+++.+|+.-..+|+|+++| ++.+.+++++++.|++++++++..|..++. ++|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~f 138 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPF 138 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---ccc
Confidence 3444567899999999999999999999999634599999999 999999999999999989999999998875 559
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|-|||--|..++ +....+.++..+.++|+|||+++
T Consensus 139 DrIvSvgmfEhv-g~~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 139 DRIVSVGMFEHV-GKENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ceeeehhhHHHh-CcccHHHHHHHHHhhcCCCceEE
Confidence 999995443433 34568899999999999999997
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-15 Score=129.23 Aligned_cols=108 Identities=22% Similarity=0.290 Sum_probs=84.2
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
+.+...+.+|.+|||||||.|.+++.+|+. |+ +|+|+.+| +..+.+++.+++.|+++++++...|..+++ .+||
T Consensus 54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD 129 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFD 129 (273)
T ss_dssp HHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-S
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCC
Confidence 344567899999999999999999999996 66 99999999 899999999999999999999999998764 4899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.|+|-.+..++ +...++.+++.+.++|+|||+++
T Consensus 130 ~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~ 163 (273)
T PF02353_consen 130 RIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLV 163 (273)
T ss_dssp EEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEE
T ss_pred EEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEE
Confidence 99995443333 44678899999999999999997
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=132.84 Aligned_cols=103 Identities=19% Similarity=0.197 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||||||+|.++..+++....+|+|+|+| .|++.|+++++.+++.++++++.+|+.++++++++||+|++....
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 5788999999999999999998534499999999 899999999999998778999999999988888899999995443
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++ -.+...++.++.++|||||.++
T Consensus 197 ~h---~~d~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 197 EH---MPDKRKFVQELARVAAPGGRII 220 (340)
T ss_pred hc---cCCHHHHHHHHHHHcCCCcEEE
Confidence 33 3467789999999999999987
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-15 Score=123.11 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=87.5
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
.+.......++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.++++++.++++ +.+...|+...+++ ++||
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD 96 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYD 96 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCC
Confidence 344444455678999999999999999999875 99999999 8999999988888873 77777787665554 6899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|++..+.+++ .....+.+++.+.++|+|||.++
T Consensus 97 ~I~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 97 FIFSTVVFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred EEEEecccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 99998654433 33567889999999999999865
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=124.98 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
...+++.+.....+.++.+|||+|||+|.++..+++. + ..+|+++|++ ++++.|+++++..++ ++++++.+|+.++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 108 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL 108 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC
Confidence 3445555665566778899999999999999999874 3 4599999999 899999999888877 5799999999888
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.++||+|++... +.+......++.++.++|+|||.++
T Consensus 109 ~~~~~~fD~V~~~~~---l~~~~~~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 109 PFDDNSFDYVTIGFG---LRNVPDYMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred CCCCCCccEEEEecc---cccCCCHHHHHHHHHHHcCcCeEEE
Confidence 777789999998643 3333566788999999999999987
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-15 Score=109.99 Aligned_cols=93 Identities=25% Similarity=0.372 Sum_probs=77.8
Q ss_pred EEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccccCCc
Q 021852 28 LDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE 106 (306)
Q Consensus 28 LDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~ 106 (306)
||+|||+|..+..+++.+..+|+++|.+ ++++.+++..... ++.++.++++++++++++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec---
Confidence 8999999999999999867799999999 8999998876543 3569999999999999999999997654444
Q ss_pred chHHHHHHHHhhcccCCeEEE
Q 021852 107 NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 107 ~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+++++.|+|||||+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEe
Confidence 788899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=119.45 Aligned_cols=97 Identities=22% Similarity=0.358 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.+++.++..+ ..+|+|+|.+ +|++.++++++++++. +++++++|+.++. ..++||+|+++.+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRAL 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehhh
Confidence 358899999999999999988743 5689999999 8999999999999885 5999999998874 3479999999742
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..++.++..+.++|+|||.++
T Consensus 119 -------~~~~~~~~~~~~~LkpgG~lv 139 (181)
T TIGR00138 119 -------ASLNVLLELTLNLLKVGGYFL 139 (181)
T ss_pred -------hCHHHHHHHHHHhcCCCCEEE
Confidence 345667788889999999987
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=116.52 Aligned_cols=103 Identities=30% Similarity=0.385 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAA-HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~-~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
++.+|||+|||+|.+++.+++.+.. +|+++|++ .+++.++++++.|++.+ ++++..|..+.. +.++||+|+++++.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-PDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-CTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-cccceeEEEEccch
Confidence 7789999999999999999997654 79999999 89999999999999976 999999986643 35899999999863
Q ss_pred cccCC--cchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLF--ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~--~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.... ......++....++|+|||.++
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 32221 1246788888999999999985
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=126.78 Aligned_cols=108 Identities=26% Similarity=0.369 Sum_probs=84.4
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
-.+++.+ ...++.+|||+|||||.|++.+++.|+++|+|+|++ -.++.|+++++.|++...+..-..+..+.. ..+
T Consensus 152 cL~~Le~--~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~ 228 (300)
T COG2264 152 CLEALEK--LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENG 228 (300)
T ss_pred HHHHHHH--hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccC
Confidence 3455553 356899999999999999999999999999999999 688999999999998642333322332222 336
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+||+|.+- ..+..+...+.++|+|||.+|
T Consensus 229 ~~DvIVANILA------~vl~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 229 PFDVIVANILA------EVLVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred cccEEEehhhH------HHHHHHHHHHHHHcCCCceEE
Confidence 99999999642 345678888899999999998
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=126.09 Aligned_cols=102 Identities=26% Similarity=0.272 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.++..+++.|. +|+++|+| +|++.|+++++..++.++++++++++.++. .+.++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4567999999999999999999865 99999999 999999999999888778999999998764 44579999999755
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++ .....++..+.++|||||.++
T Consensus 122 l~~~---~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 122 LEWV---ADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred HHhh---CCHHHHHHHHHHHcCCCeEEE
Confidence 3433 455688999999999999986
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=116.04 Aligned_cols=108 Identities=23% Similarity=0.346 Sum_probs=87.3
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.++....++.++||+|||.|..++++|+.|. .|+|+|.| ..++.+++.+++.+++ |+....|+.+..++ +.||+
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCE
Confidence 44445566788999999999999999999998 89999999 7899999999888884 99999999888876 78999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..+..++ .....+.++..+...++|||.++
T Consensus 98 I~st~v~~fL-~~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 98 IVSTVVFMFL-QRELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp EEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEE
T ss_pred EEEEEEeccC-CHHHHHHHHHHHHhhcCCcEEEE
Confidence 9997665666 45678899999999999999976
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=123.01 Aligned_cols=106 Identities=31% Similarity=0.399 Sum_probs=89.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 96 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~ 96 (306)
.....+|||+|||+|.+++++|+. ...+++++|+. ++++.|+++++.|++.++++++++|+.++. ....+||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 445789999999999999999996 55799999999 899999999999999999999999998875 33357999999
Q ss_pred cccccccCCcc----------------hHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFEN----------------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~----------------~~~~~l~~~~~~L~p~G~~i 127 (306)
|+. |+-.+.. .++.++....++|||||.+.
T Consensus 122 NPP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 122 NPP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred CCC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 986 4332222 46688888899999999986
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-14 Score=118.36 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=97.1
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCC------CEEEEEech-HHHHHHHHHHHHcCCCCe--EEEEEce
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGA------AHVYAVECS-QMANMAKQIVEANGFSNV--ITVLKGK 80 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~------~~v~~iD~s-~~~~~a~~~~~~~~~~~~--v~~~~~d 80 (306)
|.+.........++.+|||++||||.+++.+.+ .+. ++|+.+|+| +|+..++++..+.++... +.++.+|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 444444455667789999999999999999887 334 799999999 999999999988887754 9999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++++++.++|..... +++-+-.+.+..++++.|+|||||++.
T Consensus 168 AE~LpFdd~s~D~yTia---fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 168 AEDLPFDDDSFDAYTIA---FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred cccCCCCCCcceeEEEe---cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 99999999999999863 556677788999999999999999986
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-14 Score=108.62 Aligned_cols=104 Identities=25% Similarity=0.401 Sum_probs=85.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEcccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 100 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~ 100 (306)
|.+|||+|||+|.+++.+++.+..+++++|++ ..++.+++++..+++.++++++++|+.+.. ++.++||+|++++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 56899999999999999999876799999999 899999999999999888999999998876 667999999999753
Q ss_pred cccC-----CcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLL-----FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~-----~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... .......+++++.++|+|||.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~ 112 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLV 112 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEE
Confidence 2111 11245678899999999999986
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-14 Score=121.41 Aligned_cols=116 Identities=20% Similarity=0.230 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHhcc-cCCC------CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC----
Q 021852 5 VVRTKSYQNVIYQNK-FLFK------DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN---- 72 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~-~~~~------~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~---- 72 (306)
..|-...++-+.... ...| |.+|||+|||+|+++..+|+.|+ .|+|+|.+ .|++.|++....+...+
T Consensus 64 ~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~ 142 (282)
T KOG1270|consen 64 QTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIA 142 (282)
T ss_pred chhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccc
Confidence 445555555555433 1233 47899999999999999999986 99999999 89999999855443322
Q ss_pred -eEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 73 -VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 73 -~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++...+++... ++||.|+|..+ +.+-.++..++..+.++|+|+|.++
T Consensus 143 y~l~~~~~~~E~~~---~~fDaVvcsev---leHV~dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 143 YRLEYEDTDVEGLT---GKFDAVVCSEV---LEHVKDPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred eeeehhhcchhhcc---cccceeeeHHH---HHHHhCHHHHHHHHHHHhCCCCceE
Confidence 3667777777654 56999999654 3344678999999999999999987
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=121.34 Aligned_cols=108 Identities=25% Similarity=0.329 Sum_probs=87.1
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
...+++.+. ..++++|||+|||+|.+++.+++.|+++|+|+|++ .+++.|++++..|++.+++.+...+... ...
T Consensus 148 l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~ 223 (288)
T TIGR00406 148 LCLEWLEDL--DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIE 223 (288)
T ss_pred HHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccC
Confidence 344445432 45789999999999999999999888899999999 8999999999999998778777766432 234
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++||+|+++.+. ..+..++..+.++|+|||.++
T Consensus 224 ~~fDlVvan~~~------~~l~~ll~~~~~~LkpgG~li 256 (288)
T TIGR00406 224 GKADVIVANILA------EVIKELYPQFSRLVKPGGWLI 256 (288)
T ss_pred CCceEEEEecCH------HHHHHHHHHHHHHcCCCcEEE
Confidence 789999998531 345678888899999999997
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.2e-14 Score=123.15 Aligned_cols=101 Identities=25% Similarity=0.276 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||+|||+|..+..+++.|. +|+|+|.| .+++.++++++.+++ ++++...|+....+ .++||+|++..+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchh
Confidence 4556999999999999999999875 99999999 899999999998887 58888888877655 4789999998765
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++ .....+.++..+.++|+|||.++
T Consensus 195 ~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 195 MFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 554 34577889999999999999965
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-14 Score=121.00 Aligned_cols=105 Identities=17% Similarity=0.279 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH---cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK---AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~---~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
..++.+|||+|||+|.++..+++ .+..+|+|+|.| +|++.|++++..++..++++++.+++.++++ ..+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEeh
Confidence 45788999999999999888876 234599999999 9999999999988887789999999988764 35899998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
....+++. ......++..+.+.|+|||.++.
T Consensus 132 ~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 132 NFTLQFLE-PSERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred hhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 76555553 34567899999999999999873
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=123.12 Aligned_cols=106 Identities=23% Similarity=0.191 Sum_probs=84.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++++|||||||+|.++..+++.|+..|+|+|.| .++..++...+..+...++.++.++++++++ .++||+|+|.
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~ 196 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSM 196 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEEC
Confidence 3345789999999999999999999888899999999 7776554433333323479999999998877 5889999996
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
.+.+ +..+...++..+.+.|+|||.++.
T Consensus 197 ~vl~---H~~dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 197 GVLY---HRRSPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred Chhh---ccCCHHHHHHHHHHhcCCCcEEEE
Confidence 4433 345677899999999999999984
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=120.97 Aligned_cols=106 Identities=27% Similarity=0.302 Sum_probs=85.4
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
...+.++.+|||||||+|..+..+++....+|+++|+| +|++.|+++... .+++.++.+|+.+.++++++||+|++
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s 123 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYS 123 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEE
Confidence 35677889999999999999988887433499999999 899999887643 25799999999887777789999999
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....++. .......+++.+.++|||||.++
T Consensus 124 ~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 124 RDAILHL-SYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred hhhHHhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 5322222 22367889999999999999998
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=121.07 Aligned_cols=105 Identities=24% Similarity=0.327 Sum_probs=88.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHH-cCC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~-~g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
.+.++.+|||+|||+|..++.+++ .+. .+|+++|.+ +|++.|+++....++. +++++.++++++++++++||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEE
Confidence 456889999999999998887776 344 489999999 8999999999888884 799999999988877789999999
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+.+.++ ......+++++.++|+|||+++.
T Consensus 153 ~~v~~~---~~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 153 NCVINL---SPDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred cCcccC---CCCHHHHHHHHHHHcCCCcEEEE
Confidence 865332 34567789999999999999873
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-13 Score=103.58 Aligned_cols=103 Identities=23% Similarity=0.309 Sum_probs=82.9
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~iv 95 (306)
....++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.++++++.++.. +++++.+++... ....++||+|+
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEE
Confidence 44566789999999999999999884 45799999999 8999999999888875 588988887642 22236899999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+... ......+++.+.++|+|||.++.
T Consensus 94 ~~~~------~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 94 IGGS------GGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ECCc------chhHHHHHHHHHHHcCCCCEEEE
Confidence 8532 13456889999999999999973
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-14 Score=105.21 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=77.3
Q ss_pred EEEEcCCCcHHHHHHHHc---C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc-ccc
Q 021852 27 VLDVGAGTGILSLFCAKA---G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-WMG 100 (306)
Q Consensus 27 VLDlG~G~G~l~~~~a~~---g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~-~~~ 100 (306)
|||+|||+|..+..+++. + ..+++++|+| +|++.+++.....+. +++++++|+.+++...++||+|++. ...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999885 3 2699999999 999999999888776 6899999999988666899999993 322
Q ss_pred cccCCcchHHHHHHHHhhcccCCe
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDG 124 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G 124 (306)
++ ........+++.+.++|+|||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 33 466788999999999999998
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=120.80 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=84.8
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
++.......++++|||+|||+|.++..++..|+.+|+|+|.| .|+..++...+..+...++.+...++++++.. .+||
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcC
Confidence 344334567789999999999999999988888899999999 78776543322222224688888888887644 6899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+|+|..+.++ ..+...++.++.+.|+|||.++.
T Consensus 191 ~V~s~gvL~H---~~dp~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 191 TVFSMGVLYH---RKSPLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred EEEEcchhhc---cCCHHHHHHHHHHhcCCCCEEEE
Confidence 9999755443 35667899999999999999983
|
Known examples to date are restricted to the proteobacteria. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=113.42 Aligned_cols=106 Identities=26% Similarity=0.308 Sum_probs=82.8
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.+.....++.+|||+|||+|..+..+++. + ..+|+++|.+ ++++.|+++++.+++.++++++++|..+...+..
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 33444445678899999999999999888873 2 4599999999 8999999999999987789999999977543446
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++..... .+..++.+.|+|||+++
T Consensus 142 ~fD~Ii~~~~~~---------~~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 142 PFDAIIVTAAAS---------TIPSALVRQLKDGGVLV 170 (205)
T ss_pred CccEEEEccCcc---------hhhHHHHHhcCcCcEEE
Confidence 899999864211 12245668899999986
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=117.49 Aligned_cols=97 Identities=28% Similarity=0.326 Sum_probs=80.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.| .+|+++|+| +|++.|+++.. ...++.+|++++++++++||+|+++..
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~ 112 (251)
T PRK10258 40 QRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLA 112 (251)
T ss_pred ccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECch
Confidence 3456899999999999999888876 499999999 89999887632 246788999988877789999999754
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+..++..++.++.++|+|||.++
T Consensus 113 ---l~~~~d~~~~l~~~~~~Lk~gG~l~ 137 (251)
T PRK10258 113 ---VQWCGNLSTALRELYRVVRPGGVVA 137 (251)
T ss_pred ---hhhcCCHHHHHHHHHHHcCCCeEEE
Confidence 3344577889999999999999997
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-13 Score=120.79 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCC--CeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
.+.+|||+|||+|.+++.+++. +..+|+++|.| .+++.|+++++.|+.. .+++++..|..+. ++..+||+|+|++
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP 306 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP 306 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc
Confidence 3469999999999999999885 45699999999 8999999999988754 3688888887543 2446899999997
Q ss_pred cccccC--CcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLL--FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~--~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+... .......++....+.|+|||.++
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~ 337 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELY 337 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEE
Confidence 644321 22345678888899999999986
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.6e-13 Score=112.70 Aligned_cols=112 Identities=24% Similarity=0.285 Sum_probs=87.5
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.+.. ....++.+|||+|||+|.++..+++.++++|+++|++ .+++.++++++.++. +++++++|+.+. ++.+
T Consensus 25 l~~~l~~-~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~ 100 (223)
T PRK14967 25 LADALAA-EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFR 100 (223)
T ss_pred HHHHHHh-cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCC
Confidence 3344433 3456788999999999999999999877799999999 899999999988886 588999998764 3557
Q ss_pred eeeEEEEcccccccCCc-------------------chHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFE-------------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~-------------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++++. |....+ ..+..++..+.++|+|||+++
T Consensus 101 ~fD~Vi~npP-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 101 PFDVVVSNPP-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred CeeEEEECCC-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEE
Confidence 8999999863 322111 124567788889999999987
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-13 Score=115.71 Aligned_cols=102 Identities=29% Similarity=0.435 Sum_probs=80.4
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
...+++.. ...++.+|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|+++++.+++.+++.+..++
T Consensus 108 ~~l~~l~~--~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------- 177 (250)
T PRK00517 108 LCLEALEK--LVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------- 177 (250)
T ss_pred HHHHHHHh--hcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------
Confidence 34444443 246789999999999999999988888789999999 8999999999999885555544332
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+||+|+++... ..+..++..+.++|+|||.++
T Consensus 178 ~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~li 210 (250)
T PRK00517 178 LKADVIVANILA------NPLLELAPDLARLLKPGGRLI 210 (250)
T ss_pred CCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEE
Confidence 279999997531 345677888899999999998
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-13 Score=109.25 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=82.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.+. +|+++|.+ ++++.++++++.++. +++++.+|+.+.. .++||+|++++.
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p 91 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPP 91 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCC
Confidence 45668999999999999999999876 99999999 899999999998886 4889999987653 368999999875
Q ss_pred ccccCC------------------cchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLF------------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~------------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.... ......++.++.++|+|||.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~ 137 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQ 137 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEE
Confidence 322211 1124678888899999999986
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=109.85 Aligned_cols=104 Identities=27% Similarity=0.351 Sum_probs=85.3
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeE
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDI 93 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~ 93 (306)
...+.++.+|||+|||+|.+++.+++. + ..+|+++|.+ ++++.|+++++.+++.++++++.+|..+.. ...++||.
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 356788999999999999999998873 3 4599999998 899999999999986678999999987642 12368999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++.. +...+..+++.+.+.|+|||+++
T Consensus 115 V~~~~------~~~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 115 IFIGG------GSEKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred EEECC------CcccHHHHHHHHHHHcCCCcEEE
Confidence 99853 22456778889999999999987
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.8e-13 Score=114.57 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~---g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
.++.+|||+|||+|.++..+++. +..+|+|+|+| +|++.|+++++..+...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 57789999999999999988874 34589999999 99999999988776656799999999887654 58999886
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
...+++ .......+++.+.+.|+|||.++.
T Consensus 130 ~~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 130 FTLQFL-PPEDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred cchhhC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 554444 234567899999999999999883
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=115.26 Aligned_cols=103 Identities=27% Similarity=0.444 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|+.+. ++.++||+|++++.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPP- 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPP- 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCC-
Confidence 4579999999999999999984 34599999999 89999999999999877899999998653 34468999999864
Q ss_pred cccC-----------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLL-----------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~-----------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.-. ++ .....++..+.++|+|||.++
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~ 248 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLV 248 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 2111 11 123567788889999999987
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=105.43 Aligned_cols=104 Identities=21% Similarity=0.228 Sum_probs=88.0
Q ss_pred HhcccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 16 ~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
...+...++.+++|+|||||.+++.++..+ ..+|||+|.+ ++++..++|+++.+. ++++++.+++-+...+..++|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCCCCCE
Confidence 344678899999999999999999999744 6699999988 899999999999997 5799999999776323237999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+..- + ..++.+++.+...|+|||+++
T Consensus 106 iFIGG------g-~~i~~ile~~~~~l~~ggrlV 132 (187)
T COG2242 106 IFIGG------G-GNIEEILEAAWERLKPGGRLV 132 (187)
T ss_pred EEECC------C-CCHHHHHHHHHHHcCcCCeEE
Confidence 99642 2 678889999999999999998
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-13 Score=112.27 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eeec--CCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~~D~iv~~ 97 (306)
++.+|||+|||+|.++..+++. +..+|+|+|+| ++++.|+++++.+++ .+++++++|+ +.++ ++.++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5679999999999999988874 45589999999 899999999998888 4699999999 6665 556789999986
Q ss_pred ccccccCC-----cchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLF-----ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~-----~~~~~~~l~~~~~~L~p~G~~i 127 (306)
........ ....+.++.++.++|+|||.++
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 43221110 0124678899999999999997
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-13 Score=114.30 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=83.8
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
++|||+|||+|.++..+++. +..+|+++|+| ++++.+++++...++.++++++..|+.+.+.+ ++||+|++..+.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 47999999999999988884 34589999999 89999999999999988999999998766555 68999998644333
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ...+.++..+.++|+|||.++
T Consensus 80 ~---~~~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 80 I---KDKMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred C---CCHHHHHHHHHHHcCCCCEEE
Confidence 3 457889999999999999988
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-13 Score=116.34 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=80.5
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
......++.+|||+|||+|.++..+++. +..+|+|+|+| .|++.|++. +++++.+|++++. +.++||+|
T Consensus 23 ~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 23 ARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCceEE
Confidence 3345567899999999999999999885 34589999999 899988652 3788999998774 45799999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++..+.+++ .+...++.++.+.|||||.++
T Consensus 94 ~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~ 123 (255)
T PRK14103 94 VSNAALQWV---PEHADLLVRWVDELAPGSWIA 123 (255)
T ss_pred EEehhhhhC---CCHHHHHHHHHHhCCCCcEEE
Confidence 998654443 466888999999999999987
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-13 Score=112.06 Aligned_cols=104 Identities=21% Similarity=0.224 Sum_probs=81.4
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
.+.+.....++.+|||+|||+|.++..+++.. ..+|+++|.+ ++++.|+++++++++ ++++++.+|..+......+
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCC
Confidence 33334557789999999999999999998853 2479999999 899999999999998 5699999998765433468
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|++.... ..+...+.+.|+|||+++
T Consensus 147 fD~Ii~~~~~---------~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 147 YDRIYVTAAG---------PKIPEALIDQLKEGGILV 174 (215)
T ss_pred CCEEEEcCCc---------ccccHHHHHhcCcCcEEE
Confidence 9999986421 123345668899999986
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-13 Score=109.76 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
..-.++||+|||.|.++..+|.. ..+++++|.| ..++.|++++.. . .+|++++.++.+.. |.++||+||..-++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~-~~V~~~~~dvp~~~-P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--L-PHVEWIQADVPEFW-PEGRFDLIVLSEVL 116 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES-G
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--C-CCeEEEECcCCCCC-CCCCeeEEEEehHh
Confidence 34468999999999999999997 5699999999 899999988753 4 36999999998765 66999999998888
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++.....+..++..+...|+|||.+|
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV 143 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLV 143 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 999777788999999999999999998
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.2e-13 Score=111.54 Aligned_cols=101 Identities=22% Similarity=0.219 Sum_probs=80.1
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
....+.++.+|||+|||+|.++..+++. + ..+|+++|.+ ++++.|+++++..++ ++++++++|......+..+||+
T Consensus 70 ~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~ 148 (212)
T PRK13942 70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDR 148 (212)
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCE
Confidence 3455678999999999999999988884 3 2599999999 999999999999888 4699999998765445578999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++... . +.+..++.+.|+|||+++
T Consensus 149 I~~~~~---~------~~~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 149 IYVTAA---G------PDIPKPLIEQLKDGGIMV 173 (212)
T ss_pred EEECCC---c------ccchHHHHHhhCCCcEEE
Confidence 998531 1 122235567899999986
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=107.08 Aligned_cols=100 Identities=28% Similarity=0.314 Sum_probs=81.5
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
....++.+|||+|||+|.+++.+++.+ ..+|+++|.+ .+++.|+++++.+++. +++++.++... .++ ++||+|++
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~-~~~D~v~~ 103 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELP-GKADAIFI 103 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcC-cCCCEEEE
Confidence 345688999999999999999998853 4699999999 8999999999988874 69999988743 233 68999998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... ..+..++..+.+.|+|||.++
T Consensus 104 ~~~~------~~~~~~l~~~~~~Lk~gG~lv 128 (187)
T PRK08287 104 GGSG------GNLTAIIDWSLAHLHPGGRLV 128 (187)
T ss_pred CCCc------cCHHHHHHHHHHhcCCCeEEE
Confidence 6321 245678888889999999987
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=124.35 Aligned_cols=103 Identities=24% Similarity=0.232 Sum_probs=85.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
...++.+|||+|||+|.++..+++....+|+|+|+| ++++.|+++.. +...+++++.+|+.+.++++++||+|+|..
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEECC
Confidence 356788999999999999998888534489999999 89999988764 444579999999988877778999999964
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+ +..+...++.++.++|+|||.++
T Consensus 341 ~l~---h~~d~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 341 TIL---HIQDKPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred ccc---ccCCHHHHHHHHHHHcCCCeEEE
Confidence 322 33567889999999999999987
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.6e-13 Score=114.95 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=81.8
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
......++.+|||+|||+|.++..+++. +..+|+|+|+| .|++.|+++. .+++++.+|+.++. +..+||+|
T Consensus 25 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-~~~~fD~v 97 (258)
T PRK01683 25 ARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-PPQALDLI 97 (258)
T ss_pred hhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-CCCCccEE
Confidence 3345567899999999999999988874 45699999999 8999998763 35789999998765 44799999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++....+++ .+...++..+.+.|+|||.++
T Consensus 98 ~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 98 FANASLQWL---PDHLELFPRLVSLLAPGGVLA 127 (258)
T ss_pred EEccChhhC---CCHHHHHHHHHHhcCCCcEEE
Confidence 998654433 456789999999999999987
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=120.09 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec--C--CCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE--L--PVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~--~~~~~D~iv 95 (306)
.++++|||+|||+|.+++.++..|+.+|+++|.| .+++.|+++++.|++. ++++++++|+.++. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4688999999999999998888788899999999 8999999999999996 47999999997753 1 246899999
Q ss_pred EcccccccCCcc-------hHHHHHHHHhhcccCCeEEEecC
Q 021852 96 SEWMGYFLLFEN-------MLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 96 ~~~~~~~~~~~~-------~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
++++ ++..... ....++....++|+|||.++-+.
T Consensus 299 lDPP-~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPP-KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCC-CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9986 3332221 24455556779999999998433
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=114.51 Aligned_cols=101 Identities=27% Similarity=0.481 Sum_probs=81.8
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
.+|||+|||+|.+++.+++. +..+|+++|+| .+++.|+++++.+++.++++++++|+.+. ++.++||+|++++. |.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPP-yi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPP-YV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCC-CC
Confidence 68999999999999999884 45699999999 89999999999999877899999998653 34468999999864 21
Q ss_pred cC-----------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 103 LL-----------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~-----------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ++ .....++..+.++|+|||.++
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 10 11 123567888889999999987
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-12 Score=110.76 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=87.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
...++.+|||+|||+|.++..+++.+ ..+++++|.+ .+++.+++++..+++.++++++.+|+.+...+.++||+|++
T Consensus 48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~ 127 (239)
T PRK00216 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTI 127 (239)
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEE
Confidence 34567899999999999999998865 3799999999 89999999887776666799999999887766678999998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
... +.+......++..+.++|+|||.++
T Consensus 128 ~~~---l~~~~~~~~~l~~~~~~L~~gG~li 155 (239)
T PRK00216 128 AFG---LRNVPDIDKALREMYRVLKPGGRLV 155 (239)
T ss_pred ecc---cccCCCHHHHHHHHHHhccCCcEEE
Confidence 533 3344567889999999999999987
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=116.99 Aligned_cols=113 Identities=21% Similarity=0.244 Sum_probs=91.6
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
..++.......++.+|||+|||+|.+++.++..|+ +|+|+|++ .|+..|+++++.+++.+ ++++.+|+.+++++.++
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCC
Confidence 33444444567889999999999999998888754 89999999 89999999999999875 89999999998776689
Q ss_pred eeEEEEcccccccC-------CcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLL-------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~-------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|+++++ |+.. .......++..+.+.|+|||+++
T Consensus 249 ~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv 291 (329)
T TIGR01177 249 VDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV 291 (329)
T ss_pred CCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEE
Confidence 999999964 3221 11235788889999999999986
|
This family is found exclusively in the Archaea. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-12 Score=109.83 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=91.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
..|++.+.....+.++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.++++.. ....+++++.+|+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC
Confidence 456666666667788999999999999999988884 34699999999 89999988732 22357999999998877
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
++.++||+|++..+.. +..+...++..+.++|+|||.++.
T Consensus 83 ~~~~~~D~v~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQ---HLEDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred CCCCCceEEEEechhh---ccCCHHHHHHHHHHHhcCCcEEEE
Confidence 7778999999975433 335678899999999999999873
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=122.72 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=84.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIII 95 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv 95 (306)
...++.+|||+|||+|.++..+++ .+..+|+|+|+| .|++.|+++....+. ++.++.+|+.+++ +++++||+|+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEE
Confidence 345789999999999999888877 455699999999 899999888765553 5888999988776 5668999999
Q ss_pred EcccccccC----------CcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLL----------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~----------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++.+.+.+. .......+++++.+.|||||.++
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLI 534 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRII 534 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEE
Confidence 875433221 12466788999999999999997
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-12 Score=114.99 Aligned_cols=99 Identities=22% Similarity=0.190 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.++..+++ .+..+|+++|.| +|++.|+++... .+++++.+|+++++++.++||+|++...
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4678999999999999988877 355699999999 899999887542 3578999999988877789999999643
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+ +..+...+++++.++|+|||.++
T Consensus 188 L~---~~~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 188 IE---YWPDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred hh---hCCCHHHHHHHHHHhcCCCcEEE
Confidence 22 23456778999999999999986
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=105.50 Aligned_cols=106 Identities=25% Similarity=0.267 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhccc-CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 7 RTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 7 R~~~~~~ai~~~~~-~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
+.+.+.+.+.+... ..++.+|||+|||+|.++..+++.|. +|+++|++ .+++. . ++.....+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~----~~~~~~~~~~~~ 72 (161)
T PF13489_consen 5 RYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------R----NVVFDNFDAQDP 72 (161)
T ss_dssp CCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------T----TSEEEEEECHTH
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------h----hhhhhhhhhhhh
Confidence 44556666665443 67889999999999999999988887 99999998 77766 1 122332222333
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.++||+|++..+.+++ .++..++..+.++|||||.++
T Consensus 73 ~~~~~~fD~i~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~ 112 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHL---PDPEEFLKELSRLLKPGGYLV 112 (161)
T ss_dssp HCHSSSEEEEEEESSGGGS---SHHHHHHHHHHHCEEEEEEEE
T ss_pred hccccchhhHhhHHHHhhc---ccHHHHHHHHHHhcCCCCEEE
Confidence 3456899999997654444 578899999999999999987
|
... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=106.83 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~ 97 (306)
+..+|||||||+|.++..+|+. +..+|+|+|.+ ++++.|++++...++. +++++++|+.++. ++.+.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999988884 45699999999 8999999999988885 7999999998754 444689999987
Q ss_pred ccccccCC-----cchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLF-----ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~-----~~~~~~~l~~~~~~L~p~G~~i 127 (306)
........ .-..+.++..+.++|||||.++
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~ 129 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIH 129 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEE
Confidence 53322111 1112568889999999999986
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-12 Score=108.04 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=75.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||+|||||.++..+++....+|+|+|.| +|++.|++. ...++++++++++++++||+|++...
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~- 119 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFA- 119 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecCh-
Confidence 3578999999999999999988633599999999 999998753 13568899999888899999999643
Q ss_pred cccCCcchHHHHHHHHhhcccCCe
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDG 124 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G 124 (306)
+.+-.+.+.++.++.|.|||.+
T Consensus 120 --l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 120 --LHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred --hhccCCHHHHHHHHHHHhcCce
Confidence 4445678899999999999954
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-12 Score=113.77 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
-++.+.+.+... ..++.+|||+|||+|.+++.+++ .+..+|+|+|+| ++++.|+++++.++. +++++++|+.+.
T Consensus 237 eTE~LVe~aL~~--l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~ 312 (423)
T PRK14966 237 ETEHLVEAVLAR--LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDT 312 (423)
T ss_pred cHHHHHHHhhhc--cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcc
Confidence 345566665532 34567999999999999998887 456699999999 899999999998875 699999998654
Q ss_pred cCC-CceeeEEEEcccccccCCc-----------------------chHHHHHHHHhhcccCCeEEE
Q 021852 85 ELP-VTKVDIIISEWMGYFLLFE-----------------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~-~~~~D~iv~~~~~~~~~~~-----------------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++ .++||+|+|+++ |....+ .....++..+.++|+|||.++
T Consensus 313 ~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 313 DMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred ccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 332 357999999984 321111 123466667778999999976
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=109.92 Aligned_cols=101 Identities=29% Similarity=0.415 Sum_probs=81.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
.+|||+|||+|.+++.+++.. ..+|+|+|+| ++++.|+++++.+++.++++++.+|+.+. ++..+||+|++++. +.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~~~~~fDlIvsNPP-yi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-LAGQKIDIIVSNPP-YI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-CcCCCccEEEECCC-CC
Confidence 699999999999999999853 4599999999 89999999999999876799999998764 34358999999863 21
Q ss_pred cC-----------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 103 LL-----------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~-----------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ++ .....++..+.++|+|||.++
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 11 11 135567788889999999986
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.5e-12 Score=105.99 Aligned_cols=102 Identities=26% Similarity=0.268 Sum_probs=82.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.+. +|+|+|+| +|+..|++++..++..+++++..+|+.+++ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 45789999999999999999998755 99999999 899999999988877667999999988764 78999998533
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++. ....+..++.++.+++++++.+.
T Consensus 129 l~~~-~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 129 LIHY-PASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred HHhC-CHHHHHHHHHHHHHHhCCCEEEE
Confidence 2222 23456778888888888776654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=105.59 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=77.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----cCCCceee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~D 92 (306)
..+.++.+|||+|||+|.++..+++. +..+|+|+|.+ +|++.+.++++.. .++.++.+|+.+. .++ ++||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccCC
Confidence 56778999999999999999999984 44589999999 8998887776543 3588999998642 223 5699
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++.. .......++..+.++|||||.++
T Consensus 144 ~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lv 173 (226)
T PRK04266 144 VIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLL 173 (226)
T ss_pred EEEECCC-----ChhHHHHHHHHHHHhcCCCcEEE
Confidence 9998632 11123456788899999999987
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.3e-12 Score=112.39 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
...+|||+|||+|.++..+++.+ ..+|+++|++ .+++.|+++++.|++. .+++..|..+. . .++||+|++++..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~-~~~fDlIvsNPPF 271 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-I-KGRFDMIISNPPF 271 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-c-CCCccEEEECCCc
Confidence 34589999999999999998853 4589999999 8999999999999874 46677776543 2 4789999999764
Q ss_pred cccC--CcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLL--FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~--~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+... .......++..+.++|+|||.++
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~ 300 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELR 300 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence 3221 12356788999999999999986
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.5e-12 Score=114.51 Aligned_cols=105 Identities=23% Similarity=0.248 Sum_probs=82.6
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.+...+.++.+|||||||+|.++..+++....+|+|+|+| ++++.|+++++ ++ .+++...|..++ + ++||.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~-~~fD~ 231 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--N-GQFDR 231 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--C-CCCCE
Confidence 33345567899999999999999999988533499999999 89999998874 33 478888887665 3 68999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..+..+. +...++.++..+.++|+|||.++
T Consensus 232 Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 232 IVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred EEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEE
Confidence 9986543333 33456789999999999999987
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=102.82 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=81.1
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~ 91 (306)
+.......++.+|||+|||+|.++..+++. +..+|+++|.+ ++++.++++++++++. +++++.+|+.+. ..-...+
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCC
Confidence 344445678899999999999999998874 45699999999 8999999999998884 699999988652 1111345
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.++... ...+..++..+.++|+|||.++
T Consensus 111 d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li 139 (196)
T PRK07402 111 DRVCIEG-------GRPIKEILQAVWQYLKPGGRLV 139 (196)
T ss_pred CEEEEEC-------CcCHHHHHHHHHHhcCCCeEEE
Confidence 7666431 1346778899999999999987
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-12 Score=124.36 Aligned_cols=105 Identities=20% Similarity=0.154 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec-CCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE-LPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~~D~iv~~~ 98 (306)
.++++|||+|||+|.+++.+++.|+++|+++|.| .+++.|+++++.|++. ++++++++|+.++. -..++||+|++++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4688999999999999999999989899999999 8999999999999996 58999999987642 1136899999997
Q ss_pred cccccCC---------cchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLF---------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~---------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ++... ......++..+.++|+|||.++
T Consensus 617 P-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~ 653 (702)
T PRK11783 617 P-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLY 653 (702)
T ss_pred C-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEE
Confidence 5 32221 1234567777889999999987
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=107.65 Aligned_cols=110 Identities=25% Similarity=0.265 Sum_probs=85.4
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
+.+.+......+.+|||+|||.|.+++.+++. +..+++-+|.+ ..++.|+++++.|+.++. .+...+..+-. + ++
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~-~k 224 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-E-GK 224 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-c-cc
Confidence 34444445555569999999999999999994 46799999999 899999999999998653 66666665432 3 49
Q ss_pred eeEEEEcccccccCCcchHH----HHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLN----TVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~----~~l~~~~~~L~p~G~~i 127 (306)
||+|+||+..+- +..... .++.+..+.|++||.+.
T Consensus 225 fd~IisNPPfh~--G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 225 FDLIISNPPFHA--GKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred ccEEEeCCCccC--CcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 999999986542 223333 78888899999999875
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=110.42 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=87.3
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.+.....++.+|||+|||+|.++..+++. +..+++++|..++++.+++++++.++.++++++.+|+.+.+++ .+|+
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCE
Confidence 334445667789999999999999999885 4458999998889999999999999988999999999765554 3698
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+...+.+.. .......+++++.+.|+|||+++
T Consensus 219 v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~ 251 (306)
T TIGR02716 219 VLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLL 251 (306)
T ss_pred EEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEE
Confidence 8764332322 33445678999999999999997
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=104.86 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=87.5
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
+.+.+.......++.+|||+|||+|.++..+++.+. .+++++|.+ .+++.++++.. ...+++++.+|+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence 334444434455789999999999999999988654 489999998 89999888765 335689999999887766
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||+|++... +.+......+++.+.++|+|||.++
T Consensus 104 ~~~~D~i~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 104 DNSFDAVTIAFG---LRNVTDIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred CCcEEEEEEeee---eCCcccHHHHHHHHHHHcCCCcEEE
Confidence 678999998543 3344667889999999999999987
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=102.83 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.+++.++..++.+|+++|.+ ++++.++++++.+++. +++++++|+.+.. ....+||+|+++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 4678999999999999997666667899999999 8999999999999984 6999999987642 12357999999986
Q ss_pred ccccCCcchHHHHHHHHhh--cccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDK--WLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~--~L~p~G~~i 127 (306)
|. .+..+.+++.+.. +|+|+++++
T Consensus 131 -y~---~g~~~~~l~~l~~~~~l~~~~iv~ 156 (199)
T PRK10909 131 -FR---KGLLEETINLLEDNGWLADEALIY 156 (199)
T ss_pred -CC---CChHHHHHHHHHHCCCcCCCcEEE
Confidence 32 2344555555443 578888776
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=100.01 Aligned_cols=79 Identities=28% Similarity=0.354 Sum_probs=69.5
Q ss_pred HhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 16 ~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
........|++|+|+|||||.+++.++-.|+.+|+|+|++ ++++.+++++.+ +..++.++.+|+.++. .++|.+
T Consensus 38 a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtv 112 (198)
T COG2263 38 AYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTV 112 (198)
T ss_pred HHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceE
Confidence 3345667889999999999999999999999999999999 999999999988 3367999999999875 669999
Q ss_pred EEccc
Q 021852 95 ISEWM 99 (306)
Q Consensus 95 v~~~~ 99 (306)
+.|+.
T Consensus 113 imNPP 117 (198)
T COG2263 113 IMNPP 117 (198)
T ss_pred EECCC
Confidence 99974
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=102.83 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc----CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~----g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
.+.+|||+|||+|.+++.+++. +..+|+++|++ .+++.|+++.. ++.++++|+....+. .+||+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~-~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFD-TLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccccc-CCccEEEEC
Confidence 3679999999999999988873 34589999999 89999987642 478999999776543 689999999
Q ss_pred ccccccCCc---------chHHHHHHHHhhcccCCeEEEecCc
Q 021852 98 WMGYFLLFE---------NMLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 98 ~~~~~~~~~---------~~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
+.-.-.... .....++..+.+++++|+.++|...
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 853311111 2244577777789999998888753
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-12 Score=105.77 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
|++-..+.+.+ .......+|.|+|||+|..+..+++ .+.+.++|+|.| +|++.|++.. .+++|..+|+.++
T Consensus 15 RtRPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w 87 (257)
T COG4106 15 RTRPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTW 87 (257)
T ss_pred ccCcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhc
Confidence 44444454444 4556678999999999999999988 677799999999 9999997654 3689999999999
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. |..+.|++++|....++ .+...++..+...|.|||++-
T Consensus 88 ~-p~~~~dllfaNAvlqWl---pdH~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 88 K-PEQPTDLLFANAVLQWL---PDHPELLPRLVSQLAPGGVLA 126 (257)
T ss_pred C-CCCccchhhhhhhhhhc---cccHHHHHHHHHhhCCCceEE
Confidence 7 55899999999775544 666778888889999999985
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-13 Score=99.47 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=60.5
Q ss_pred EEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-C-CCceeeEEEEccccccc
Q 021852 28 LDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-L-PVTKVDIIISEWMGYFL 103 (306)
Q Consensus 28 LDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~~~D~iv~~~~~~~~ 103 (306)
||+|||+|.++..+++. +..+++++|+| .|++.|++++...... ....+..+..+.. . +.++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999888874 55599999999 8998998888877653 2334433333322 1 22599999997655544
Q ss_pred CCcchHHHHHHHHhhcccCCeEE
Q 021852 104 LFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 104 ~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
.++..+++.+.++|+|||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 77889999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=104.00 Aligned_cols=102 Identities=21% Similarity=0.168 Sum_probs=79.4
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.......++.+|||+|||+|.++..+++.+ .+|+++|.+ ++++.|++++++.++. +++++.+|..+...+.++||+
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCE
Confidence 3334556788999999999999998888864 489999998 8999999999998885 499999998653223478999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++... . ..+...+.+.|+|||.++
T Consensus 148 I~~~~~---~------~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 148 ILVTAA---A------PEIPRALLEQLKEGGILV 172 (212)
T ss_pred EEEccC---c------hhhhHHHHHhcCCCcEEE
Confidence 998632 1 122345668999999986
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-12 Score=99.61 Aligned_cols=107 Identities=28% Similarity=0.344 Sum_probs=83.4
Q ss_pred CCCCC-EEEEEcCCCcHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDK-VVLDVGAGTGILSLFCAKAGAA-HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~-~VLDlG~G~G~l~~~~a~~g~~-~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
+.+.+ +|||+|||.|.+...+++.|.. ..+|+|+| ..++.|+..++++++++.|++.+.|+.+-.+..++||+|+=-
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeec
Confidence 44444 9999999999999999997755 49999999 899999999999999988999999998866555889988752
Q ss_pred cccc--ccC---CcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGY--FLL---FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~--~~~---~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... .++ ...-+...+..+.++|+|||+++
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv 178 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV 178 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence 1100 111 11223456777889999999998
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.9e-12 Score=117.95 Aligned_cols=112 Identities=22% Similarity=0.358 Sum_probs=86.3
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee--ecCCCc
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE--IELPVT 89 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~ 89 (306)
..+.......++.+|||+|||+|.++..+++.+ .+|+|+|.+ +|++.+++. ++..++++++.+|+.. ++++.+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCC
Confidence 444444445567899999999999999999874 599999999 898876542 2333578999999863 456668
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+||+|+++.+.+++ ....+..++..+.++|+|||.++..
T Consensus 103 ~fD~I~~~~~l~~l-~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 103 SVDLIFSNWLLMYL-SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CEEEEehhhhHHhC-CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99999998765555 2334678999999999999998754
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=106.63 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C----CCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~ 91 (306)
..++++|||+|||+|..++.+++. +..+|+++|.+ ++++.|+++++++++.++++++.+|+.+.. + +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 456789999999999988777762 46699999999 899999999999999989999999997642 1 13689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
|+|+.+. .......++..+.++|+|||+++.+.
T Consensus 146 D~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 146 DFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9999863 23455677888889999999988544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.9e-12 Score=102.84 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=80.5
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
+...+.++.+|||||||+|..+..+|+.. .+|+++|.. +.++.|+++++..|+.+ |.++++|...-.-+..+||.|+
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~I~ 143 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDRII 143 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcCEEE
Confidence 44667899999999999999999999963 399999977 99999999999999965 9999999877544558999999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... ....++. +.+.|++||+++
T Consensus 144 Vtaa-----a~~vP~~----Ll~QL~~gGrlv 166 (209)
T COG2518 144 VTAA-----APEVPEA----LLDQLKPGGRLV 166 (209)
T ss_pred Eeec-----cCCCCHH----HHHhcccCCEEE
Confidence 8531 1122233 346789999985
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=100.11 Aligned_cols=105 Identities=25% Similarity=0.280 Sum_probs=82.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCe-EEEEEceeeeecCCCceeeEEEEcc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..++.+|||+|||+|.++..+++.+ .+|+++|.+ ++++.+++++..+++.++ +.++++|+.+.. +..+||+|++++
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~d~vi~n~ 98 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-RGDKFDVILFNP 98 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-cccCceEEEECC
Confidence 3678899999999999999999884 599999999 899999999998888644 888888886643 445899999985
Q ss_pred ccccc------------------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFL------------------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~------------------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..... .....+..++.++.++|+|||.++
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 42110 001235667888999999999876
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=104.33 Aligned_cols=103 Identities=28% Similarity=0.322 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
++.+|||+|||+|.++..+++. +..+++++|.+ .+++.|++++..+++. +++++++|+.+. ++.++||+|+++++.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP-LPGGKFDLIVSNPPY 164 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc-CcCCceeEEEECCCC
Confidence 4569999999999999999984 45599999999 8999999999998885 699999998763 455899999998752
Q ss_pred cccC-----------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLL-----------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~-----------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... ++ .....++..+.++|+|||.++
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~ 214 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLL 214 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEE
Confidence 2110 00 112367788889999999987
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=105.57 Aligned_cols=98 Identities=27% Similarity=0.328 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.++..+++.+ ..+++++|.+ +++..+++... +++.++.+|+.+.+++.++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 345799999999999999998864 4579999999 88888877543 3688999999988777789999999765
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+ +..+...++..+.++|+|||.++
T Consensus 108 l~---~~~~~~~~l~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 108 LQ---WCDDLSQALSELARVLKPGGLLA 132 (240)
T ss_pred hh---hccCHHHHHHHHHHHcCCCcEEE
Confidence 33 33567889999999999999987
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=106.59 Aligned_cols=108 Identities=16% Similarity=0.026 Sum_probs=85.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....++.+|||+|||+|..+..+++. + ..+|+|+|.+ .+++.++++++++++. ++++++.|+..+....++||.|+
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEE
Confidence 44578899999999999999988873 2 3589999999 8999999999999985 59999999877654446799999
Q ss_pred EcccccccC------------Ccc-------hHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLL------------FEN-------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~------------~~~-------~~~~~l~~~~~~L~p~G~~i 127 (306)
+++..+... .+. ....++..+.++|||||+++
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV 196 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 987544321 111 12357888889999999998
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-11 Score=101.92 Aligned_cols=104 Identities=23% Similarity=0.281 Sum_probs=90.9
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHH-c-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
|.....+.+|++|||.|+|+|.++..+|+ . +..+|+..|+. +.++.|++|++..++.+++++..+|+.+...+ +.|
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-ccc
Confidence 44557789999999999999999999997 3 34699999998 99999999999999988899999999988766 599
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.|+.++ ++.-.++..+...|+|||.++
T Consensus 165 Dav~LDm--------p~PW~~le~~~~~Lkpgg~~~ 192 (256)
T COG2519 165 DAVFLDL--------PDPWNVLEHVSDALKPGGVVV 192 (256)
T ss_pred CEEEEcC--------CChHHHHHHHHHHhCCCcEEE
Confidence 9999875 355678888999999999986
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-11 Score=105.47 Aligned_cols=98 Identities=30% Similarity=0.438 Sum_probs=77.1
Q ss_pred EEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccccc
Q 021852 26 VVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 103 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~ 103 (306)
+|||+|||||.+++.+++.. ...|+|+|+| ..++.|++++..+++ .++.++.+|+.+- ++ ++||+||||+. |.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~~-~~fDlIVsNPP-Yip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-LR-GKFDLIVSNPP-YIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-cC-CceeEEEeCCC-CCC
Confidence 89999999999999999954 4599999999 899999999999998 5677777776543 23 49999999974 322
Q ss_pred CC-----------c------------chHHHHHHHHhhcccCCeEEE
Q 021852 104 LF-----------E------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 104 ~~-----------~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. | .....++....++|+|||.++
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~ 235 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLI 235 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEE
Confidence 11 1 133466777788999998886
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-11 Score=102.45 Aligned_cols=119 Identities=24% Similarity=0.264 Sum_probs=91.1
Q ss_pred ChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 4 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 4 D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
|..|.+...+.+.......++.+|||+|||+|.++..+++.+. +++++|.+ .+++.+++++..++.. ++++...++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 103 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVE 103 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHH
Confidence 3455555556665432234588999999999999999988765 79999999 8999999988877653 5888888887
Q ss_pred eecCC-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~~~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...+ .++||+|++..+ +.+......++..+.+.|+|||.++
T Consensus 104 ~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~ 146 (224)
T TIGR01983 104 DLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILF 146 (224)
T ss_pred HhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEE
Confidence 76533 368999998643 2333567789999999999999987
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5e-11 Score=105.03 Aligned_cols=117 Identities=25% Similarity=0.334 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
++.+.+.+.......++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++ +....+++++.+|+.+..
T Consensus 93 te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~ 171 (275)
T PRK09328 93 TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPL 171 (275)
T ss_pred cHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcC
Confidence 3455555553344567789999999999999999885 35699999999 89999999987 344457999999985532
Q ss_pred CCCceeeEEEEcccccccCC------------------------cchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLF------------------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~------------------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.++||+|++++. |.... ......++..+.++|+|||.++
T Consensus 172 -~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~ 235 (275)
T PRK09328 172 -PGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLL 235 (275)
T ss_pred -CCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 3478999999864 22110 0123566777789999999987
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=114.62 Aligned_cols=104 Identities=20% Similarity=0.236 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
++.+|||+|||+|.+++.+++ .+..+|+++|+| .+++.|+++++.+++.++++++.+|+.+. ++.++||+|+|++.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPP- 215 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPP- 215 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCC-
Confidence 356899999999999998876 456699999999 89999999999999877899999997653 34468999999863
Q ss_pred cccCC------------c------------chHHHHHHHHhhcccCCeEEEe
Q 021852 101 YFLLF------------E------------NMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 101 ~~~~~------------~------------~~~~~~l~~~~~~L~p~G~~ip 128 (306)
|.... | .....++..+.++|+|||.++.
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 22111 1 1234567777889999999873
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.8e-11 Score=104.46 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCcHH-HHHHH-H-cCCCEEEEEech-HHHHHHHHHHHH-cCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGIL-SLFCA-K-AGAAHVYAVECS-QMANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l-~~~~a-~-~g~~~v~~iD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
++++|+|||||.|.+ ++.++ + .+..+++++|.+ ++++.|++.++. .++.++++|+.+|+.+.....++||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 789999999998755 44444 3 346689999999 899999999964 888889999999998764234789999998
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.++ .......+++.+.+.|+|||.++
T Consensus 203 ALi~~--dk~~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 203 ALVGM--DKEEKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred ccccc--ccccHHHHHHHHHHhcCCCcEEE
Confidence 43222 22567889999999999999998
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=107.10 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCcH----HHHHHHHcC------CCEEEEEech-HHHHHHHHHHH----HcC-----------------
Q 021852 22 FKDKVVLDVGAGTGI----LSLFCAKAG------AAHVYAVECS-QMANMAKQIVE----ANG----------------- 69 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~----l~~~~a~~g------~~~v~~iD~s-~~~~~a~~~~~----~~~----------------- 69 (306)
.++.+|||+|||||. +++.+++.+ ..+|+|+|+| .|++.|++.+- ..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999995 566666632 2489999999 89999987531 011
Q ss_pred -----CCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 -----FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 -----~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.++|++.+.|+.+.+.+.++||+|+|..+..++ .......++..+.+.|+|||.++
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~ 239 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLF 239 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEE
Confidence 2246899999998876666899999996443333 33456789999999999999997
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.8e-11 Score=98.53 Aligned_cols=112 Identities=19% Similarity=0.177 Sum_probs=84.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-- 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 85 (306)
+++...+.. ..++.+|||++||+|.+++.++..|+++|+++|.+ .+++.++++++.+++.++++++++|+.+..
T Consensus 38 ea~f~~l~~---~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 38 ELFFNILRP---EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF 114 (189)
T ss_pred HHHHHHHHH---hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH
Confidence 344444432 35689999999999999999999999999999999 899999999999998778999999995532
Q ss_pred C--CCceeeEEEEcccccccCCcchHHHHHHHH--hhcccCCeEEE
Q 021852 86 L--PVTKVDIIISEWMGYFLLFENMLNTVLYAR--DKWLVDDGIVL 127 (306)
Q Consensus 86 ~--~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~--~~~L~p~G~~i 127 (306)
+ ....+|+|+.+|. |.. ...+.++..+ ..+|+++|.++
T Consensus 115 ~~~~~~~~dvv~~DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv 156 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPP-FFN---GALQALLELCENNWILEDTVLIV 156 (189)
T ss_pred hhccCCCceEEEECcC-CCC---CcHHHHHHHHHHCCCCCCCeEEE
Confidence 1 1234899998875 322 2334444433 35789999887
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=112.54 Aligned_cols=108 Identities=18% Similarity=0.104 Sum_probs=85.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCcee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~ 91 (306)
....+|.+|||+|||+|..+..+++. + ..+|+|+|.+ ++++.++++++++|+. +++++.+|+.++. ...++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccC
Confidence 44567899999999999999988874 2 4599999999 8999999999999995 5999999998764 234689
Q ss_pred eEEEEcccccccCC---c---------ch-------HHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLF---E---------NM-------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~---~---------~~-------~~~~l~~~~~~L~p~G~~i 127 (306)
|.|+++...++... . .. ...++.++.++|||||.++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv 381 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV 381 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 99999865433211 0 11 3467888889999999998
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=103.86 Aligned_cols=104 Identities=21% Similarity=0.148 Sum_probs=76.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
...|++|||||||.|..+..++..|++.|+|+|.+ -.....+...+-.+...++..+...+++++. .+.||+|+|-.+
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 56799999999999999999999999999999987 4332222221222332345555556777765 589999999666
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
.|+. .+.-..+..+...|+|||.+|.
T Consensus 192 LYHr---r~Pl~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 192 LYHR---RSPLDHLKQLKDSLRPGGELVL 217 (315)
T ss_pred hhcc---CCHHHHHHHHHHhhCCCCEEEE
Confidence 5543 5566688888899999999873
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=100.16 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=81.7
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEE-EEEceeeeec-CCCceeeEEEEccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVIT-VLKGKIEEIE-LPVTKVDIIISEWMGY 101 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~~D~iv~~~~~~ 101 (306)
..||++|||||..--+.--.+..+|+++|.+ .|-++|.+.++++.-. ++. +++++.++++ +++.++|+||+..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQLADGSYDTVVCTLV-- 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcccccCCeeeEEEEEE--
Confidence 3689999999977555544445699999999 8999999998888654 465 9999999988 78899999999754
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+....+....+.+..|+|+|||+++
T Consensus 155 -LCSve~~~k~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 155 -LCSVEDPVKQLNEVRRLLRPGGRII 179 (252)
T ss_pred -EeccCCHHHHHHHHHHhcCCCcEEE
Confidence 4455677889999999999999997
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-11 Score=111.29 Aligned_cols=107 Identities=19% Similarity=0.090 Sum_probs=84.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~i 94 (306)
....+|.+|||+|||+|..++.+++.+ ..+|+|+|.+ .++..++++++++|+. ++++.+|+.++. ++.++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 456789999999999999999998854 3599999999 8999999999999883 689999998653 234689999
Q ss_pred EEcccccccC------------Ccch-------HHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLL------------FENM-------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~------------~~~~-------~~~~l~~~~~~L~p~G~~i 127 (306)
++++..+... .+.. ...++..+.++|+|||.++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv 369 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL 369 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 9987533210 1111 2367888889999999998
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-11 Score=105.28 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=86.7
Q ss_pred HHHHHHHhccc-CCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-
Q 021852 10 SYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE- 85 (306)
Q Consensus 10 ~~~~ai~~~~~-~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 85 (306)
.|.+++..... ..++++|||||||+|.++..+++ .+..+|+++|++ ++++.|++.+..++..++++++.+|..+..
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~ 131 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA 131 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH
Confidence 46666543222 34568999999999999998877 456699999999 899999998876655568999999987642
Q ss_pred CCCceeeEEEEcccccc-cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~-~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...++||+|+++..... .........++..+.+.|+|||+++
T Consensus 132 ~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 132 VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 12368999999753221 1111123678889999999999997
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-11 Score=107.70 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee--cCCCceeeEEEEc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 97 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~iv~~ 97 (306)
..+..+||||||+|.++..+|+. +...++|+|++ +++..|.+++..+++. ++.++++|+..+ .++++++|.|+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 34679999999999999999984 45699999999 8999999999999995 599999999764 3567899999986
Q ss_pred ccccccCCcc---hHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFEN---MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~---~~~~~l~~~~~~L~p~G~~i 127 (306)
....+.-..+ ..+.++..+.|+|+|||.+.
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 4322211111 23678999999999999986
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.8e-11 Score=101.88 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC--CCceeeEEEEcc
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIISEW 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~iv~~~ 98 (306)
++.+|||+|||+|.+++.+++ .+..+|+++|+| .+++.|+++++.++ ++++++|+.+... ..++||+|++++
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 346899999999999999887 444599999999 89999999998876 3678888865321 125799999997
Q ss_pred cccccC------------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLL------------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~------------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
. |... ++ ..+..++..+.++|+|||.++
T Consensus 162 P-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~ 213 (251)
T TIGR03704 162 P-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLL 213 (251)
T ss_pred C-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 5 2211 00 123467777889999999987
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=99.84 Aligned_cols=117 Identities=29% Similarity=0.373 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 4 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 4 D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
|.+| ++..+.|... ..+|.+|||+-||||.+++.+..+||++|+.+|.+ ..+...+++++..+..++++++..|..
T Consensus 26 drvr-ealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~ 102 (183)
T PF03602_consen 26 DRVR-EALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF 102 (183)
T ss_dssp HHHH-HHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred HHHH-HHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence 3444 4555555532 26899999999999999999999999999999999 899999999999999888999999965
Q ss_pred eec--C--CCceeeEEEEcccccccCCcch-HHHHHHHHh--hcccCCeEEE
Q 021852 83 EIE--L--PVTKVDIIISEWMGYFLLFENM-LNTVLYARD--KWLVDDGIVL 127 (306)
Q Consensus 83 ~~~--~--~~~~~D~iv~~~~~~~~~~~~~-~~~~l~~~~--~~L~p~G~~i 127 (306)
... . ...+||+|+.+|+ |.. .. .+.++..+. .+|+++|.++
T Consensus 103 ~~l~~~~~~~~~fDiIflDPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii 150 (183)
T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDPP-YAK---GLYYEELLELLAENNLLNEDGLII 150 (183)
T ss_dssp HHHHHHHHCTS-EEEEEE--S-TTS---CHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHhhcccCCCceEEEECCC-ccc---chHHHHHHHHHHHCCCCCCCEEEE
Confidence 432 2 4589999999985 322 23 366666655 7999999987
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-11 Score=99.59 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=73.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..++.+|||+|||+|.++..+++. +..+++|+|+| +|++.|+++. .++.++++++.+ ++++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 457789999999999999998885 55699999999 8999998753 246788888877 56678999999976
Q ss_pred cccccCCcchHHHHHHHHhhccc
Q 021852 99 MGYFLLFENMLNTVLYARDKWLV 121 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~ 121 (306)
+.+++ ....+..++.++.+.++
T Consensus 114 vL~hl-~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 114 VLIHI-NPDNLPTAYRELYRCSN 135 (204)
T ss_pred hhhhC-CHHHHHHHHHHHHhhcC
Confidence 65554 34567778888888763
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.8e-11 Score=110.63 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=85.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....+|.+|||+|||+|..+..+++. +..+|+|+|.+ .+++.+++++++.|+. +++++.+|+.++. +..+||+|+
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~Vl 323 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDAIL 323 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCEEE
Confidence 34567899999999999999888773 34599999999 9999999999999984 6999999998875 447899999
Q ss_pred EcccccccCC------------cch-------HHHHHHHHhhcccCCeEEEe
Q 021852 96 SEWMGYFLLF------------ENM-------LNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 96 ~~~~~~~~~~------------~~~-------~~~~l~~~~~~L~p~G~~ip 128 (306)
+++..++... +.. ...++..+.++|+|||+++-
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy 375 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVY 375 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 8754332110 111 23578888999999999983
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=109.55 Aligned_cols=110 Identities=21% Similarity=0.189 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec----CCCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE----LPVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----~~~~~~D~iv 95 (306)
.+|++|||+-|-||.+++.||..||++|++||.| ..++.|+++++.||+. +++.++.+|+.++. -.+.+||+|+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3499999999999999999999999999999999 8999999999999986 56899999997753 2246999999
Q ss_pred EcccccccCC------cchHHHHHHHHhhcccCCeEEEecCc
Q 021852 96 SEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 96 ~~~~~~~~~~------~~~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
.+|+.+.-.- ..+...++..+.++|+|||.++.+.+
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 9986443211 12455677778899999999984444
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-11 Score=110.70 Aligned_cols=110 Identities=15% Similarity=0.043 Sum_probs=83.5
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC--CCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~i 94 (306)
....+|.+|||+|||+|..+..+++ .+..+|+|+|.+ ++++.+++++++.|+..++++..+|...... +.++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 4467889999999999999999988 455699999999 8999999999999986445556677654432 34689999
Q ss_pred EEcccccccCC---cc----------------hHHHHHHHHhhcccCCeEEEe
Q 021852 95 ISEWMGYFLLF---EN----------------MLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 95 v~~~~~~~~~~---~~----------------~~~~~l~~~~~~L~p~G~~ip 128 (306)
+++...+.... .+ ....++..+.++|||||.++-
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvy 366 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVY 366 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99864332211 11 124678888899999999983
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-11 Score=110.43 Aligned_cols=112 Identities=19% Similarity=0.107 Sum_probs=87.3
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i 94 (306)
....+|.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++++.|+. +++++++|+.++. ...++||.|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEE
Confidence 45678899999999999999988874 35699999999 9999999999999985 5999999998764 234789999
Q ss_pred EEcccccccCCc---c----------------hHHHHHHHHhhcccCCeEEEecCc
Q 021852 95 ISEWMGYFLLFE---N----------------MLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 95 v~~~~~~~~~~~---~----------------~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
+++...+..... + ....++....++|+|||.++-+.+
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 998654433211 1 124567788899999999984333
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-11 Score=101.01 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--------CCCce
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPVTK 90 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~ 90 (306)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+++| +.+ .+++++++|+++.. ++.++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DPI-VGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cCC-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 577899999999999999988884 3 358999999874 123 24899999998853 45678
Q ss_pred eeEEEEcccccccCCcc--------hHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFEN--------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~--------~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+|++..++..... ....++..+.++|+|||.++
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~v 162 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFV 162 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 99999986444322110 12467888999999999987
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.7e-11 Score=104.95 Aligned_cols=103 Identities=23% Similarity=0.211 Sum_probs=78.7
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.+...+.++.+|||+|||+|.++..+++. + ..+|+++|.+ ++++.|+++++.++. +++.++.+|..+...+..+|
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCc
Confidence 333345678899999999999999999884 3 2479999999 899999999999998 46999999987654344679
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++.. .. +.+...+.+.|+|||.++
T Consensus 151 D~Ii~~~---g~------~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 151 DVIFVTV---GV------DEVPETWFTQLKEGGRVI 177 (322)
T ss_pred cEEEECC---ch------HHhHHHHHHhcCCCCEEE
Confidence 9999852 11 122234567899999875
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.1e-11 Score=101.20 Aligned_cols=108 Identities=27% Similarity=0.274 Sum_probs=85.0
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCcee
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKV 91 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~ 91 (306)
.+.......++.+|||+|||+|.++..+++.++ +|+++|.+ .+++.+++++...+. +++++..++.+.. ...++|
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCc
Confidence 344334456788999999999999999988765 89999999 899999988877765 4788888887664 234789
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++..+ +.+......++..+.++|+|||.++
T Consensus 116 D~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 116 DVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred cEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEE
Confidence 99998643 3333566788999999999999987
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-11 Score=111.11 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=84.9
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 93 (306)
....++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++++|+. +++++++|+.++. ++ ++||+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc-ccCCE
Confidence 44567899999999999999998884 35699999999 8999999999999985 4999999998763 33 68999
Q ss_pred EEEcccccccC------------Ccch-------HHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLL------------FENM-------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~------------~~~~-------~~~~l~~~~~~L~p~G~~i 127 (306)
|++++..+... .+.. ...++..+.++|+|||.++
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 99986533211 0011 1357888889999999998
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-11 Score=103.80 Aligned_cols=106 Identities=26% Similarity=0.280 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec--C-CCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE--L-PVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~-~~~~~D~iv~ 96 (306)
.++++|||+-|-||.+++.++..||++|+.+|.| .+++.++++++.|++. ++++++..|+.+.. + ..++||+||.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999999999999999999999 8999999999999986 68999999987642 1 2469999999
Q ss_pred cccccccCC---cchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLF---ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~---~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+.+.-.. +.....++..+.++|+|||.++
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~ 235 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLL 235 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 987543221 1245567777889999999987
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=98.69 Aligned_cols=101 Identities=19% Similarity=0.094 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC--------------CCeEEEEEceeeeecC
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~ 86 (306)
.++.+|||+|||.|.-+..+|+.|. .|+|+|+| .+++.+.+ ++++ ..+|+++.+|+.++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 4678999999999999999999988 89999999 77776533 2222 1358999999988763
Q ss_pred C-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .++||.|+-..+...+ .....+..+..+.++|+|||.++
T Consensus 109 ~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred ccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 2 3579998875432322 45566788999999999999865
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-11 Score=104.82 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-C---CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-G---AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g---~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
++.+|||+|||+|.++..+++. + ...|+|+|+| +|++.|+++. .+++++.+|+.++++++++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 4578999999999999888763 2 2379999999 8999887642 35789999999888887899999984
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. +..+.++.|.|+|||.++
T Consensus 159 ~~----------~~~~~e~~rvLkpgG~li 178 (272)
T PRK11088 159 YA----------PCKAEELARVVKPGGIVI 178 (272)
T ss_pred cC----------CCCHHHHHhhccCCCEEE
Confidence 21 123467789999999997
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-11 Score=101.70 Aligned_cols=103 Identities=22% Similarity=0.240 Sum_probs=75.1
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.+...+.+|.+|||||||+|..+..+++. |. .+|+++|.. .+++.|+++++..++. ++.++.+|...-..+..+|
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SE
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCc
Confidence 334456889999999999999999999984 43 379999988 8999999999999984 7999999986643344689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.|++... . +.... .+.+.|++||+++
T Consensus 143 D~I~v~~a---~--~~ip~----~l~~qL~~gGrLV 169 (209)
T PF01135_consen 143 DRIIVTAA---V--PEIPE----ALLEQLKPGGRLV 169 (209)
T ss_dssp EEEEESSB---B--SS--H----HHHHTEEEEEEEE
T ss_pred CEEEEeec---c--chHHH----HHHHhcCCCcEEE
Confidence 99998632 1 12222 3446799999986
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-11 Score=102.00 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=73.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH----cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~----~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
..++.+|||+|||+|.++..+++ .| ..+|+|+|+| +|++.|+++...++ +++...+...++.++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEE
Confidence 35678999999999999888875 23 2489999999 99999988754433 456666666565556799999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.+.+++. ......++.++.++++ ++.++
T Consensus 134 ~~~~~lhh~~-d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 134 TSNHFLHHLD-DAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred EECCeeecCC-hHHHHHHHHHHHHhcC-eeEEE
Confidence 9986555543 2345678999989887 44443
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-11 Score=108.46 Aligned_cols=227 Identities=14% Similarity=0.080 Sum_probs=150.0
Q ss_pred HHHHHHHcCCCEEEEEechH-HHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHH-----
Q 021852 37 LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLN----- 110 (306)
Q Consensus 37 l~~~~a~~g~~~v~~iD~s~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~----- 110 (306)
++.+.++. ..+++-.+.++ .-....+++-..+++ +++.+..-+ ..+ ++.|++.++++.. .....+.
T Consensus 381 ~ge~~~q~-~~~r~~~~l~e~~r~if~~~~~~~Kls-n~e~vp~i~---t~~-ds~~ivl~epf~~--tam~PW~~L~F~ 452 (636)
T KOG1501|consen 381 IGEMGRQI-WPKRIQARLSERERVIFNQRLIQLKLS-NNESVPAIM---TSP-DSPDIVLAEPFVK--TAMNPWNHLRFL 452 (636)
T ss_pred Hhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhhh---cCC-CCCceeecchhhh--hccCchhheeee
Confidence 34444442 44556566552 223334444444442 244333222 234 3558888776422 1111121
Q ss_pred HHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhccccccCCCCchhhhhhhc-----------CCceEEeeCCCC
Q 021852 111 TVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM-----------MEPLVDTVDQNQ 179 (306)
Q Consensus 111 ~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~-----------~~~~~~~~~~~~ 179 (306)
.....+...+.|+.++.|+.+.+.+.|.+.+.++..+.. ...+.|||++-++++.. ++|+|+| +..
T Consensus 453 Y~~~~l~~~~G~~~~V~P~~~~L~Ai~~kF~DL~~I~S~-~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY--~~~ 529 (636)
T KOG1501|consen 453 YDVEVLKMMHGDELRVEPHMGVLKAIPEKFEDLQNIASD-VGTVNGFDLSFFDEISTKARTATDAIVDEQSLWEY--AGI 529 (636)
T ss_pred eeHHHHHHhcCCceeeccccchhhhhhHHHHHHHhhccc-ccccccceeeehhHHHHhhchhhhhhhccchhhhc--cCe
Confidence 123445578889999999999999999998888776544 46899999988876632 4689999 889
Q ss_pred ccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceEEEEEEEEEEEecCCCceeEEecCCCC--------CCCCceeEE
Q 021852 180 IVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKS--------RATHWKQTV 251 (306)
Q Consensus 180 ~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~lst~p~~--------~~~~W~q~~ 251 (306)
.+++|.++++|+|....+.+ .-.+.+.+.+.-|++.+|++++|+ ++.||||-.+ +..|.+|+|
T Consensus 530 ~~~d~~eIL~F~~~~~V~~Q-----k~~V~i~~~~sS~A~~mWME~~~~----~~nLSTGLL~~~~~G~~~WN~~~KQ~V 600 (636)
T KOG1501|consen 530 VKGDAVEILRFPIDGRVSSQ-----KCVVNIDNMSSSNAIPMWMEWEFG----GINLSTGLLSISSAGVPEWNKGYKQGV 600 (636)
T ss_pred ecCCceeEEEeccCCccccc-----eeEEEccCCCccccceeeEEeeeC----ceeecccceeecCCCCcccCcccccee
Confidence 99999999999999865443 234467899999999999999999 5778886542 246889999
Q ss_pred EecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEE
Q 021852 252 LYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 290 (306)
Q Consensus 252 ~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 290 (306)
|++...+ .-.-+++.++.+. +..++|.++|..
T Consensus 601 YF~~t~L--~~~ksl~~~~~F~-----~~TGDI~~qF~~ 632 (636)
T KOG1501|consen 601 YFPITAL--RNDKSLCLHALFD-----KSTGDINFQFGK 632 (636)
T ss_pred EEEhHHh--CCCceEEEEEEEc-----CCCCceEEEecc
Confidence 9875433 3334788888886 335677666543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=98.83 Aligned_cols=101 Identities=24% Similarity=0.245 Sum_probs=77.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.+. +|+++|.| +|++.|+++....+..++++++.+|+.. ..++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 35678999999999999999999866 69999999 8999999998888876679999988543 3478999998543
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
.++. ....+..++..+.+.+++++.+
T Consensus 137 l~~~-~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 137 LIHY-PQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hhcC-CHHHHHHHHHHHHhhcCCeEEE
Confidence 2222 2345667777777766544443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.3e-11 Score=95.78 Aligned_cols=105 Identities=23% Similarity=0.317 Sum_probs=77.4
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.+.....++.+|||+|||+|.++..+++. +.+|+++|.+ .+++.+++++.. .++++++++|+.++.++..++|.
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCCE
Confidence 333345677889999999999999999998 4699999999 899999888754 24799999999998766557999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++++. +.. ....+..++.. ..+.++|.++
T Consensus 81 vi~n~P-y~~-~~~~i~~~l~~--~~~~~~~~l~ 110 (169)
T smart00650 81 VVGNLP-YNI-STPILFKLLEE--PPAFRDAVLM 110 (169)
T ss_pred EEECCC-ccc-HHHHHHHHHhc--CCCcceEEEE
Confidence 999974 322 22333434332 2244666665
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=102.59 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcC--C--CCeEEEEEceeeeec-CCCceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANG--F--SNVITVLKGKIEEIE-LPVTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~~-~~~~~~D~i 94 (306)
.++++||+||||.|.++..+++. +..+|+++|++ ++++.|++.+...+ . .++++++.+|...+. ...++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35689999999999999999886 67799999999 89999999876432 2 357999999987753 234789999
Q ss_pred EEcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.......... .-..+++.+.+.|+|||+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 9986433221111 12567788899999999997
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=93.17 Aligned_cols=117 Identities=25% Similarity=0.335 Sum_probs=89.0
Q ss_pred ChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 4 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 4 D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
|.+| ++..+.|... ...|.+|||+-+|||.+++.|+..||.+++.+|.+ ..+..++++++..++..+++++..|+.
T Consensus 27 drVR-EalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 27 DRVR-EALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred hHHH-HHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence 4555 4555555421 47899999999999999999999999999999999 899999999999998888999999988
Q ss_pred eec--CCC-ceeeEEEEcccccccCCcchH--HHHHHH--HhhcccCCeEEE
Q 021852 83 EIE--LPV-TKVDIIISEWMGYFLLFENML--NTVLYA--RDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~--~~~-~~~D~iv~~~~~~~~~~~~~~--~~~l~~--~~~~L~p~G~~i 127 (306)
... ... ++||+|+.++... .+.. ...+.. -..+|+|+|.++
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv 151 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYA----KGLLDKELALLLLEENGWLKPGALIV 151 (187)
T ss_pred HHHHhcCCCCcccEEEeCCCCc----cchhhHHHHHHHHHhcCCcCCCcEEE
Confidence 441 221 2499999998622 2223 222222 347899999987
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=102.45 Aligned_cols=106 Identities=11% Similarity=-0.007 Sum_probs=76.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCc----eee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVT----KVD 92 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~----~~D 92 (306)
+.++.+|||+|||+|..+..+++.. ..+|+++|+| +|++.|++++....-.-++..+.+|+.+. .++.. ...
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 4567899999999999999998864 3589999999 99999988876543223578899999763 34322 222
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++....+ .........+++.+.+.|+|||.++
T Consensus 141 ~~~~gs~~~-~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 141 GFFPGSTIG-NFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EEEeccccc-CCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 333322111 2234566789999999999999987
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=95.72 Aligned_cols=106 Identities=27% Similarity=0.411 Sum_probs=75.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcC--CCCeEEEEEceeeeec----CCCcee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--FSNVITVLKGKIEEIE----LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~~~ 91 (306)
....++.+|||||||+|..++.+++. ++++|+..|.++.++.++.+++.|+ ...++++...++.+.. +...+|
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45678899999999999999999997 7889999998888899999999987 5567888887775421 334689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++.-+ +..+...+.++..+.++|+++|.++
T Consensus 121 D~IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 121 DVILASDV---LYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp SEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred CEEEEecc---cchHHHHHHHHHHHHHHhCCCCEEE
Confidence 99998644 3356788999999999999998854
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=97.40 Aligned_cols=105 Identities=19% Similarity=0.266 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE-ceeeeec--CCCceeeEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLK-GKIEEIE--LPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~--~~~~~~D~i 94 (306)
..+.++||+||++.|..++.+|. .+ ..++++||.+ ++++.|++++++.|+.++|+++. +|..+.. ...++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 45789999999999999999988 44 5699999998 99999999999999999899999 4765532 235899999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEEecCc
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
+.+. .....+.+++...++|+|||+++.+..
T Consensus 137 FIDa------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 137 FIDA------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred EEeC------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 9753 446778899999999999999985543
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=98.52 Aligned_cols=72 Identities=25% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+.+|||+|||+|.+++.+++. +..+|+++|++ .|++.++++. .+++++++|+.++.. ..+||+|++++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF 136 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPPF 136 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCCc
Confidence 4569999999999999888774 34699999999 8999988753 258899999988753 3789999999754
Q ss_pred c
Q 021852 101 Y 101 (306)
Q Consensus 101 ~ 101 (306)
+
T Consensus 137 ~ 137 (279)
T PHA03411 137 G 137 (279)
T ss_pred c
Confidence 3
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=99.93 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=79.8
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---C
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP---V 88 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~ 88 (306)
|.....+.+|++|||.|+|+|.++..+++ .+..+|+..|.. +.++.|+++++..++.+++++.+.|+.+..++ .
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~ 111 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELE 111 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-T
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccccc
Confidence 44557889999999999999999999998 345699999998 89999999999999998999999999653332 2
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcc-cCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L-~p~G~~i 127 (306)
..+|.|+.++. .+-..+..+.+.| ++||+++
T Consensus 112 ~~~DavfLDlp--------~Pw~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 112 SDFDAVFLDLP--------DPWEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp TSEEEEEEESS--------SGGGGHHHHHHHE-EEEEEEE
T ss_pred CcccEEEEeCC--------CHHHHHHHHHHHHhcCCceEE
Confidence 67999998763 2233555666888 8999986
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=100.64 Aligned_cols=104 Identities=20% Similarity=0.210 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C----CCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~ 91 (306)
..+.++|||||+|+|..++.+|+. + ..+|+++|.+ +.++.|+++++++|+.++|+++.+++.+.. + ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 456789999999999999999983 2 4489999999 899999999999999989999999986642 1 12589
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
|+|+.+. .......+++.+.++|+|||+++.+.
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 9999864 34567778888889999999998544
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=103.23 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-CCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.+++.+|+.+ ++|+|+|.+ ++++.|+++++.+++ ++++++.+|+.++.. ..++||+|++++.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 357899999999999999999976 599999999 899999999999999 579999999987642 2357999999976
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-. +..+.++..+. -++|+++++
T Consensus 250 r~-----G~~~~~~~~l~-~~~~~~ivy 271 (315)
T PRK03522 250 RR-----GIGKELCDYLS-QMAPRFILY 271 (315)
T ss_pred CC-----CccHHHHHHHH-HcCCCeEEE
Confidence 22 22233333332 356766554
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-10 Score=96.24 Aligned_cols=102 Identities=23% Similarity=0.159 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC--------------CCeEEEEEceeeeec
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF--------------SNVITVLKGKIEEIE 85 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~ 85 (306)
..++.+|||+|||.|.-+..+|+.|. +|+|+|+| ..++.+.+ ++++ ..+|++.++|+.++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 35678999999999999999999988 89999999 77776532 3332 246899999998875
Q ss_pred CC-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ...||.|+-..+.+.+ .......++..+.++|+|||+++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 AADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred cccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 32 2579999976543333 55667788999999999998744
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=106.94 Aligned_cols=110 Identities=23% Similarity=0.173 Sum_probs=82.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-- 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 85 (306)
+...+.+.......++.+|||+|||+|.+++.+++.+ ++|+|+|.| +|++.|+++++.+++. +++++.+|+.+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhh
Confidence 4444444444456678999999999999999999875 599999999 8999999999999985 6999999987532
Q ss_pred --CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 --~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...+||+|++++.-. +. ...+..+.+ ++|+++++
T Consensus 361 ~~~~~~~fD~Vi~dPPr~-----g~-~~~~~~l~~-~~~~~ivy 397 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRA-----GA-AEVMQALAK-LGPKRIVY 397 (443)
T ss_pred hhhhcCCCCEEEECcCCc-----Ch-HHHHHHHHh-cCCCeEEE
Confidence 2346799999997522 22 234455544 57877765
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=96.67 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=84.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C----CCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~ 91 (306)
..+.++||+|||++|..++.+|+. + ..+|+.+|.+ +.++.|++++++.|+.++|+++.+++.+.. + +.++|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 456789999999999999999984 3 4599999999 899999999999999999999999997642 1 12589
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
|+|+.+. ........+..+.++|+|||+++.+.
T Consensus 123 D~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 123 DFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred eEEEEcc------cccchhhHHHHHhhhccCCeEEEEcc
Confidence 9999863 34566777888889999999998443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-10 Score=94.94 Aligned_cols=119 Identities=23% Similarity=0.278 Sum_probs=86.2
Q ss_pred HHHHHHHHHhc---ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 8 TKSYQNVIYQN---KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 8 ~~~~~~ai~~~---~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
++-|.+++... ..-.++..+||+|||+|.+++.++. .+...|+|+|.| .++..|.+|++++++.+++.+++-+++
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 34455554422 2234556899999999999998877 566799999999 899999999999999999999976554
Q ss_pred ee-----cCCCceeeEEEEcccccccC------------Ccc------------hHHHHHHHHhhcccCCeEEE
Q 021852 83 EI-----ELPVTKVDIIISEWMGYFLL------------FEN------------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~-----~~~~~~~D~iv~~~~~~~~~------------~~~------------~~~~~l~~~~~~L~p~G~~i 127 (306)
.- ++..++.|+++||+. |... +|+ .+-.+..-+.|+|+|||.+.
T Consensus 210 ~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred cccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 32 234589999999974 4221 111 12244555679999999886
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-10 Score=83.42 Aligned_cols=100 Identities=31% Similarity=0.353 Sum_probs=78.7
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-CCceeeEEEEccccccc
Q 021852 26 VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWMGYFL 103 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~iv~~~~~~~~ 103 (306)
+++|+|||+|.++..+++.+..+++++|.+ +++..+++.....+ ..+++++..++.+... ...++|+|+++.+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999998888667799999998 78888875444333 3578999999988753 45789999998653321
Q ss_pred CCcchHHHHHHHHhhcccCCeEEEe
Q 021852 104 LFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 104 ~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
......++..+.+.|+|+|.++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEE
Confidence 45778888888999999999873
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-10 Score=100.46 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC----CCeEEEEEceeeeecCCCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
.++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++++..+. ..++++...|+.++ .++||+|++
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 3678999999999999999999865 89999999 899999998876421 13578888887654 378999998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.++.. ......++..+.+ +.++|.++
T Consensus 219 ~~vL~H~p-~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYP-QDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecC-HHHHHHHHHHHHh-hcCCEEEE
Confidence 64433221 2233455665544 45666655
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=94.90 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=71.1
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--------CC
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LP 87 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~ 87 (306)
...+.++.+|||+|||+|.++..+++. +..+|+++|++++. .. .+++++.+|+.+.. ++
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhC
Confidence 455688999999999999999888774 35589999999432 12 34788888886542 34
Q ss_pred CceeeEEEEccccccc-CC-c------chHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFL-LF-E------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~-~~-~------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++|+|+++...++. .. . .....++..+.++|+|||+++
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 143 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFV 143 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 5689999997432210 00 0 123678888899999999987
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-10 Score=97.43 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=78.6
Q ss_pred HHHHHHHH---hcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 9 KSYQNVIY---QNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 9 ~~~~~ai~---~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
.....+|. ....+.++.+|||+|||+|.++..+++. + ..+|||+|++ .|.+.+.+.++.. .+|.++..|+.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~ 191 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR 191 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence 34455564 2345788999999999999999999984 3 4589999998 6665444443322 35788888886
Q ss_pred ee---cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EI---ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~---~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ..+.+++|+|+++.. .......++.++.++|||||.++
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva-----~pdq~~il~~na~r~LKpGG~~v 234 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFI 234 (293)
T ss_pred ChhhhhcccCCCCEEEEeCC-----CcchHHHHHHHHHHhccCCCEEE
Confidence 42 122357999999752 12344456667889999999987
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-10 Score=113.90 Aligned_cols=119 Identities=15% Similarity=0.225 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcc-cCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCC-------------
Q 021852 8 TKSYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFS------------- 71 (306)
Q Consensus 8 ~~~~~~ai~~~~-~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~------------- 71 (306)
++.+.+++.... ...++.+|||+|||+|.+++.+++. +..+|+|+|+| ++++.|+++++.|++.
T Consensus 102 TE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~ 181 (1082)
T PLN02672 102 SFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKT 181 (1082)
T ss_pred HHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccc
Confidence 455555543221 1124579999999999999999884 45699999999 8999999999987542
Q ss_pred --CeEEEEEceeeeecCC-CceeeEEEEcccccccCC---------------------------------c---chHHHH
Q 021852 72 --NVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF---------------------------------E---NMLNTV 112 (306)
Q Consensus 72 --~~v~~~~~d~~~~~~~-~~~~D~iv~~~~~~~~~~---------------------------------~---~~~~~~ 112 (306)
++++++++|+.+.... ..+||+||||+. |.... + .....+
T Consensus 182 l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i 260 (1082)
T PLN02672 182 LLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 260 (1082)
T ss_pred ccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHH
Confidence 4799999998765321 137999999974 32111 0 122456
Q ss_pred HHHHhhcccCCeEEE
Q 021852 113 LYARDKWLVDDGIVL 127 (306)
Q Consensus 113 l~~~~~~L~p~G~~i 127 (306)
+....++|+|||.++
T Consensus 261 ~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 261 VEEGISVIKPMGIMI 275 (1082)
T ss_pred HHHHHHhccCCCEEE
Confidence 667778999999987
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-11 Score=98.83 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcccC--CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcC-CCCeEEEEEceee
Q 021852 7 RTKSYQNVIYQNKFL--FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANG-FSNVITVLKGKIE 82 (306)
Q Consensus 7 R~~~~~~ai~~~~~~--~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~-~~~~v~~~~~d~~ 82 (306)
+++-|.+++.+...+ .+|.+|||...|-|..++.+++.||.+|+.+|.+ ..++.|.-|-=..+ ++..++++.+|+.
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~ 195 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY 195 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHH
Confidence 445677777765443 4699999999999999999999999999999999 78877754321111 1235799999997
Q ss_pred eec--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++. +++++||+|+.++.-+.+.++.--..+.+++.|.|+|||.++
T Consensus 196 e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 196 EVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred HHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 764 678899999999987777777777889999999999999997
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.5e-10 Score=101.62 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-CCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.+++.++..+ .+|+|+|.+ .+++.|+++++.+++. +++++.+|+.+... ...+||+|+.++.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 456899999999999999999865 599999999 8999999999999985 79999999976531 1246999999986
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-. +..+.+++.+. .++|+++++
T Consensus 310 r~-----G~~~~~l~~l~-~~~p~~ivy 331 (374)
T TIGR02085 310 RR-----GIGKELCDYLS-QMAPKFILY 331 (374)
T ss_pred CC-----CCcHHHHHHHH-hcCCCeEEE
Confidence 22 33345555554 368887765
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=97.04 Aligned_cols=114 Identities=22% Similarity=0.226 Sum_probs=94.6
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc-eeeeecCCC
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG-KIEEIELPV 88 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~ 88 (306)
+..++.....+.+|..|||--||||.+.+.+.-.|+ +++|+|++ .|++-|+.|++..++.+ ..+... |++.++++.
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCCC
Confidence 455566666788999999999999999999999988 99999999 99999999999998864 555555 999999987
Q ss_pred ceeeEEEEcccccccCC-------cchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~-------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++|.|++++. |+-.. +.....+++.+.+.|++||+++
T Consensus 263 ~~vdaIatDPP-YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~v 307 (347)
T COG1041 263 NSVDAIATDPP-YGRSTKIKGEGLDELYEEALESASEVLKPGGRIV 307 (347)
T ss_pred CccceEEecCC-CCcccccccccHHHHHHHHHHHHHHHhhcCcEEE
Confidence 78999999974 44322 2346678888899999999886
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-11 Score=97.73 Aligned_cols=101 Identities=20% Similarity=0.172 Sum_probs=73.8
Q ss_pred CCCC-EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 22 FKDK-VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~-~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
.++. .++|+|||+|..++.+|.. .++|+|+|.| +|++.|++.....-.....+....++.++.-.++++|+|++...
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3443 8999999999888888887 7799999999 89999987643222222334444445555434689999999765
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.|.+ +++.+.+.+.|+||++|-++
T Consensus 110 ~HWF----dle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 110 VHWF----DLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred HHhh----chHHHHHHHHHHcCCCCCEE
Confidence 4544 67889999999999988544
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=102.70 Aligned_cols=110 Identities=23% Similarity=0.219 Sum_probs=82.5
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--- 85 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 85 (306)
.+.+.+.+.....++.+|||+|||+|.+++.+|+. +++|+|+|.+ ++++.|+++++.+++ ++++++.+|+.+..
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHH
Confidence 33344444444567789999999999999999986 4699999999 899999999999998 47999999987632
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+||+|+.++.-. +....+++.+. .++|++.++
T Consensus 357 ~~~~~~~D~vi~dPPr~-----G~~~~~l~~l~-~l~~~~ivy 393 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRK-----GCAAEVLRTII-ELKPERIVY 393 (431)
T ss_pred HhcCCCCCEEEECcCCC-----CCCHHHHHHHH-hcCCCEEEE
Confidence 2235799999987532 22344555544 378887664
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.8e-10 Score=92.02 Aligned_cols=110 Identities=30% Similarity=0.308 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
|+..-+..|.. .+.++.+|+|+.||-|.+++.+|+ ..+++|+|+|.+ ..++.++++++.|++.+++.++++|..++
T Consensus 87 rl~~Er~Ri~~--~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~ 164 (200)
T PF02475_consen 87 RLSTERRRIAN--LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF 164 (200)
T ss_dssp GGHHHHHHHHT--C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-
T ss_pred ccHHHHHHHHh--cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh
Confidence 34444455553 367899999999999999999998 446789999999 89999999999999999999999999988
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
.. ...+|-|+.+.+... ..++.++..++++||++
T Consensus 165 ~~-~~~~drvim~lp~~~-------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 165 LP-EGKFDRVIMNLPESS-------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp ---TT-EEEEEE--TSSG-------GGGHHHHHHHEEEEEEE
T ss_pred cC-ccccCEEEECChHHH-------HHHHHHHHHHhcCCcEE
Confidence 54 589999998764332 23666677889999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=96.19 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=87.3
Q ss_pred HHHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHc--CCC-CeEEEEEceee
Q 021852 10 SYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEAN--GFS-NVITVLKGKIE 82 (306)
Q Consensus 10 ~~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~--~~~-~~v~~~~~d~~ 82 (306)
.|.+.+... ....++++||+||||.|.++..+++.+ ..+|+.+|++ .+++.|++.+... ++. ++++++.+|..
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~ 155 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV 155 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH
Confidence 455555432 113457899999999999999999864 5699999999 7999999987542 232 58999999986
Q ss_pred eec--CCCceeeEEEEcccccccCCc-chHHHHHHHHhhcccCCeEEEecCc
Q 021852 83 EIE--LPVTKVDIIISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 83 ~~~--~~~~~~D~iv~~~~~~~~~~~-~~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
... .+.++||+|+++......... ..-..+++.+.+.|+|||+++.+..
T Consensus 156 ~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 156 EFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred HHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 542 234689999997543321111 1134678888999999999974443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.7e-10 Score=91.81 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-e-cCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~~D~iv~~ 97 (306)
+.++.+|||+|||+|.++..+++.+...++|+|.+ ++++.+++ + +++++.+|+.+ + +++.++||+|++.
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 34678999999999999988887555578999998 88887754 1 36788888865 3 2456789999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCC
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDD 123 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~ 123 (306)
...++ -.+...+++++.+.++++
T Consensus 83 ~~l~~---~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 83 QTLQA---TRNPEEILDEMLRVGRHA 105 (194)
T ss_pred hHhHc---CcCHHHHHHHHHHhCCeE
Confidence 54333 355677788777776653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=97.01 Aligned_cols=105 Identities=19% Similarity=0.192 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH---------cCCCCeEEEEEceeeeec----CCC
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA---------NGFSNVITVLKGKIEEIE----LPV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~---------~~~~~~v~~~~~d~~~~~----~~~ 88 (306)
++.+|||+|||.|.-..-..+++.++++|+|++ ..++.|+++.+. ....-...++.+|..... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999999877777777788899999999 888889888721 111124567777765432 232
Q ss_pred --ceeeEEEEc-ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 --TKVDIIISE-WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 --~~~D~iv~~-~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+||+|-|- .++|....+.....++..+...|+|||.+|
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 599999995 467777788888999999999999999998
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=96.64 Aligned_cols=117 Identities=23% Similarity=0.316 Sum_probs=83.4
Q ss_pred HHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHH-----HHHcCC-CCeEEEEEce
Q 021852 11 YQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQI-----VEANGF-SNVITVLKGK 80 (306)
Q Consensus 11 ~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~-----~~~~~~-~~~v~~~~~d 80 (306)
|.+.+... ......++||++|||+|..+..+.+.+ ..+|+++|++ ++++.|++. +.+..+ .++++++.+|
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D 215 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD 215 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence 66666542 223456799999999999988888864 5799999999 899999862 112222 3689999999
Q ss_pred eeeec-CCCceeeEEEEccccccc--CCcchHHHHHHHHhhcccCCeEEE
Q 021852 81 IEEIE-LPVTKVDIIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 81 ~~~~~-~~~~~~D~iv~~~~~~~~--~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..++. ...++||+|+++...... .....-..++..+.+.|+|||+++
T Consensus 216 a~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V 265 (374)
T PRK01581 216 AKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFV 265 (374)
T ss_pred HHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 98743 234689999998643211 111122467888899999999987
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-09 Score=90.78 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C-C----Cce
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L-P----VTK 90 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~----~~~ 90 (306)
..+.++||+||+++|.-++.+|+. + ..+|+++|.+ +.++.|++++++.|+.++|+++.+++.+.. + + .++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 345679999999999999999883 2 4599999998 899999999999999999999999987642 1 1 268
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCc
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
||+|+.+. ........++.+.++|+|||+++.+..
T Consensus 157 fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 157 FDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred ccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 99999863 334566777778899999999985543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.9e-10 Score=89.74 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=68.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~ 97 (306)
+.+|.+|||+|||.|.+...+.+....+.+|+|++ +.+..+.+ +| +.++++|+++-. +++++||.||.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCCCCccEEehH
Confidence 57899999999999999888887445599999998 65555543 23 679999997632 788999999975
Q ss_pred ccccccCCcchHHHHHHHHhhcccC
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVD 122 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p 122 (306)
.. +..-.....+++++.|.-+.
T Consensus 83 qt---LQ~~~~P~~vL~EmlRVgr~ 104 (193)
T PF07021_consen 83 QT---LQAVRRPDEVLEEMLRVGRR 104 (193)
T ss_pred hH---HHhHhHHHHHHHHHHHhcCe
Confidence 32 43445667778877666443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-09 Score=86.66 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=84.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC--CC--------EEEEEech-HHHHHHHHHHHHcCCCCeEEEE
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AA--------HVYAVECS-QMANMAKQIVEANGFSNVITVL 77 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g--~~--------~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~ 77 (306)
.....++.......++..|||--||+|.+.+.++..+ .. +++|.|++ ++++.|+++++..++.+.+.+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 4556677766778889999999999999999888742 22 38999999 8999999999999998889999
Q ss_pred EceeeeecCCCceeeEEEEcccccccC-C-----cchHHHHHHHHhhcccCCeEE
Q 021852 78 KGKIEEIELPVTKVDIIISEWMGYFLL-F-----ENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 78 ~~d~~~~~~~~~~~D~iv~~~~~~~~~-~-----~~~~~~~l~~~~~~L~p~G~~ 126 (306)
+.|+.++++..+++|.||+++. |+.. . +.....+++.+.+.|++..++
T Consensus 94 ~~D~~~l~~~~~~~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 94 QWDARELPLPDGSVDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp E--GGGGGGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred ecchhhcccccCCCCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 9999999866689999999974 4321 1 123346677778888884444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=103.18 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC-CEEEEEech-HHHHHHHHH--HHH---cCCC-CeEEEEEceeeeec-CCCceee
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQI--VEA---NGFS-NVITVLKGKIEEIE-LPVTKVD 92 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~--~~~---~~~~-~~v~~~~~d~~~~~-~~~~~~D 92 (306)
.++++|||+|||+|..+..+++.+. .+|+++|++ ++++.++++ +.. +.+. ++++++.+|..+.. ...++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4578999999999999999988764 799999999 899999983 221 1222 47999999988743 2247899
Q ss_pred EEEEcccccccCC--cchHHHHHHHHhhcccCCeEEEec
Q 021852 93 IIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 93 ~iv~~~~~~~~~~--~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+|+++........ ...-..+++.+.+.|+|||+++.+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 9999864322110 111235778888999999999743
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.5e-09 Score=90.93 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcC--C-CCeEEEEEceeeeec-CCCceeeEEEE
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 96 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~-~~~~~~D~iv~ 96 (306)
.+++||+||||+|.++..+++.+ ..+|+++|++ ++++.+++.+...+ + ..+++++.+|..+.. ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999999999998888865 6799999999 89999998875432 1 146888888876532 12378999999
Q ss_pred cccccccCCcc-hHHHHHHHHhhcccCCeEEEec
Q 021852 97 EWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 97 ~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+.......... ....+++.+.+.|+|||+++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 76432211111 1356778889999999999833
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=94.34 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=71.4
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.......++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.+++++..++..++++++++|+.+..+ .
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~ 100 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--P 100 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--c
Confidence 34445545567788999999999999999999874 589999999 8999999998877755689999999987654 4
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
++|+|++++.
T Consensus 101 ~~d~VvaNlP 110 (294)
T PTZ00338 101 YFDVCVANVP 110 (294)
T ss_pred ccCEEEecCC
Confidence 6899999964
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-09 Score=93.47 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHc-CCCCeEEEEE-ceeeeec----CCCceeeEE
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEAN-GFSNVITVLK-GKIEEIE----LPVTKVDII 94 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~----~~~~~~D~i 94 (306)
++.++||||||+|.+...++. ....+++|+|++ .+++.|+++++.| ++.++|+++. .+..++. .+.++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 467999999999877655554 444589999999 8999999999999 8988898865 3332221 235789999
Q ss_pred EEccc
Q 021852 95 ISEWM 99 (306)
Q Consensus 95 v~~~~ 99 (306)
+||+.
T Consensus 194 vcNPP 198 (321)
T PRK11727 194 LCNPP 198 (321)
T ss_pred EeCCC
Confidence 99986
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-09 Score=90.98 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=68.0
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.+.....++.+|||+|||+|.++..+++.+ .+|+++|++ .+++.+++++.. . ++++++++|+.+++++
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCch--
Confidence 44455554556788999999999999999999984 599999999 899999887754 2 4799999999887654
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
.+|.|++++.
T Consensus 91 ~~d~Vv~NlP 100 (258)
T PRK14896 91 EFNKVVSNLP 100 (258)
T ss_pred hceEEEEcCC
Confidence 5899999975
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.1e-09 Score=95.43 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=78.6
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 24 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
+.+|||++||+|.+++.++. .++.+|+++|.+ +.++.++++++.|++. +++++++|+..+....++||+|+.++++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~G- 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPFG- 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCCC-
Confidence 46899999999999999987 566799999999 8999999999999985 5789999987753213679999999742
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
....+++...+.++++|++..+
T Consensus 136 ------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------CcHHHHHHHHHHhcCCCEEEEE
Confidence 2234666655678999998733
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-09 Score=92.65 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=66.2
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
.+.+.+.....++.+|||+|||+|.++..+++.+. +|+|+|++ +|++.+++++.. ++++++++|+.+++++...
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcC
Confidence 33444445567889999999999999999999865 99999999 899999876632 4799999999988654222
Q ss_pred eeEEEEccc
Q 021852 91 VDIIISEWM 99 (306)
Q Consensus 91 ~D~iv~~~~ 99 (306)
.|.||+|+.
T Consensus 106 ~~~vv~NlP 114 (272)
T PRK00274 106 PLKVVANLP 114 (272)
T ss_pred cceEEEeCC
Confidence 599999974
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-08 Score=81.64 Aligned_cols=110 Identities=24% Similarity=0.288 Sum_probs=83.0
Q ss_pred HHHHHHHHhcccCCCCC-EEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~-~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
+.+.+.+.-...+.... +++|+|+|.|.-++.+|- .+..+++.+|.+ .-+...+..+..-+++ +++++++++++ .
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~ 110 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-P 110 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-T
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-c
Confidence 34445554434444444 899999999998888877 456699999988 7888888888888995 69999999998 3
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+||+|++-.+ ..+..++.-..++|++||.++
T Consensus 111 ~~~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l 145 (184)
T PF02527_consen 111 EYRESFDVVTARAV-------APLDKLLELARPLLKPGGRLL 145 (184)
T ss_dssp TTTT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEE
T ss_pred ccCCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEE
Confidence 34589999999765 456778888889999999987
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-10 Score=92.90 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWM 99 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~ 99 (306)
+-.++||+|||||+.+..+... +.+.+|+|+| +|++.|.++ ++-+ +..++++..+. ...+++|+|++.-+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhhhhH
Confidence 3579999999999999888775 6699999999 999998764 2211 23344443322 34589999998543
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+.+.+.++.++-....+|+|||.+..
T Consensus 198 ---l~YlG~Le~~~~~aa~~L~~gGlfaF 223 (287)
T COG4976 198 ---LPYLGALEGLFAGAAGLLAPGGLFAF 223 (287)
T ss_pred ---HHhhcchhhHHHHHHHhcCCCceEEE
Confidence 33557888999999999999999873
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-09 Score=90.23 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=86.8
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcC-----CCCeEEEEEceeee
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANG-----FSNVITVLKGKIEE 83 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~ 83 (306)
.|.+.+.......++..++|+|||-|.-.+-.-++|..+++++|++ ..++.|+++.+.-. ..-.+.++.+|...
T Consensus 104 NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 104 NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 3344444345567889999999999988888888899999999998 57788877654211 11136788888754
Q ss_pred ec------CCCceeeEEEEc-ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IE------LPVTKVDIIISE-WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~------~~~~~~D~iv~~-~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. .++.+||+|-|- .++|....+.....++..+.+.|+|||++|
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 32 234459999885 355556666778888999999999999998
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.6e-09 Score=87.62 Aligned_cols=51 Identities=27% Similarity=0.404 Sum_probs=41.3
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHH
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANM 60 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~ 60 (306)
.+..++.......++++|||+|||||.++..+++.|+++|+|+|.+ +|+..
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3445555444446889999999999999999999999999999998 67654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=83.98 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=75.8
Q ss_pred CEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEccc
Q 021852 25 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 99 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~~~ 99 (306)
..+||||||.|.+.+.+|+ .+...++|+|+. ..+..+.+.+...+++ |+.++++|+..+. ++++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3999999999999998888 566799999998 8888888888888884 6999999987732 45689999988644
Q ss_pred ccccCCcc-----hHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFEN-----MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~-----~~~~~l~~~~~~L~p~G~~i 127 (306)
+...-..+ .-+.++..+.+.|+|||.+.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEE
Confidence 33221111 23578888999999999885
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=90.36 Aligned_cols=100 Identities=25% Similarity=0.302 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..+|.+|+|.-||-|.+++.+|+.|+..|+|+|++ ..++.++++++.|++.+.++.+++|+.++......+|-|+.+.+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 55699999999999999999999988789999999 89999999999999998899999999998643378999997654
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .-..++..+.+.+++||++-
T Consensus 266 ~-------~a~~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 266 K-------SAHEFLPLALELLKDGGIIH 286 (341)
T ss_pred C-------cchhhHHHHHHHhhcCcEEE
Confidence 2 22446666668888899875
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=91.21 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=70.9
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC----------------
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP---------------- 87 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------------- 87 (306)
.+|||+|||+|.+++.+++. +++|+|+|.+ ++++.|+++++.|++. +++++.+|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 47999999999999988885 5699999999 9999999999999985 599999998774311
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..++|+|+.++.-. +..+.+++.+.+ |+++++
T Consensus 277 ~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivY 308 (353)
T TIGR02143 277 SYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILY 308 (353)
T ss_pred cCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEE
Confidence 01379999998632 334445554433 555554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=91.63 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CC-------------
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LP------------- 87 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~------------- 87 (306)
+.+|||++||+|.+++.+++. +++|+|+|.+ .+++.|+++++.|++. +++++.+|+.+.. +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccc
Confidence 357999999999999988885 6699999999 8999999999999985 7999999987642 10
Q ss_pred -CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 -VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 -~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+||+|+.++.-. +..+.++..+.+ |+++++
T Consensus 285 ~~~~~D~v~lDPPR~-----G~~~~~l~~l~~---~~~ivy 317 (362)
T PRK05031 285 KSYNFSTIFVDPPRA-----GLDDETLKLVQA---YERILY 317 (362)
T ss_pred cCCCCCEEEECCCCC-----CCcHHHHHHHHc---cCCEEE
Confidence 12589999998622 333445554433 555543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.7e-08 Score=82.83 Aligned_cols=105 Identities=16% Similarity=0.047 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHH------H-c----CCCCeEEEEEceeeeecCC-
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVE------A-N----GFSNVITVLKGKIEEIELP- 87 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~------~-~----~~~~~v~~~~~d~~~~~~~- 87 (306)
..++.+||+.|||.|.-+..+|+.|. +|+|+|+| ..++.+.+... . + --..+++++++|+.+++..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34678999999999999999999998 79999999 66666644110 0 0 0013689999999988532
Q ss_pred --CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 --~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||.|+=-.... .+....-....+.+.++|+|||.++
T Consensus 120 ~~~~~fD~VyDra~~~-Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 120 NNLPVFDIWYDRGAYI-ALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred cccCCcCeeeeehhHh-cCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 25799988654323 3366677788889999999999986
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=78.66 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=71.1
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
.......|+.++|+|||+|.++...+..++..|.|+|++ +.++.+.+++....+ ++.++++++.++.+..+.||..+
T Consensus 42 ~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 42 NTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred hhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEE
Confidence 334457899999999999999988888888899999999 899999999988877 47999999999887779999999
Q ss_pred Eccc
Q 021852 96 SEWM 99 (306)
Q Consensus 96 ~~~~ 99 (306)
.++.
T Consensus 120 iNpp 123 (185)
T KOG3420|consen 120 INPP 123 (185)
T ss_pred ecCC
Confidence 9864
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9e-08 Score=76.59 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 24 DKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
...++|||||+|..+-++++ .+.....+.|++ .+++..++.++.|+. ++.++..|+.+-..+ +++|+++.++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~-~~VDvLvfNPP- 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN-ESVDVLVFNPP- 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhcc-CCccEEEECCC-
Confidence 67999999999999999988 345578899999 899999999999987 588999888765434 99999999863
Q ss_pred cccCC-------------------cchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLF-------------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~-------------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.... ....+.++..+..+|+|.|.++
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 32211 1124566777778899999985
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=82.49 Aligned_cols=108 Identities=22% Similarity=0.372 Sum_probs=74.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcC---------------------------
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANG--------------------------- 69 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~--------------------------- 69 (306)
.....++.+|||||-+|.++..+|+ .|+..|.|+|++ ..+..|+++++..-
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 3456678999999999999999999 788899999999 78999998765321
Q ss_pred -------CCCeEEEEEcee----ee-ecCCCceeeEEEEc----ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 -------FSNVITVLKGKI----EE-IELPVTKVDIIISE----WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 -------~~~~v~~~~~d~----~~-~~~~~~~~D~iv~~----~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++++.+...+. .+ +.+....||+|+|- |+ |.-.+..-+..++..+.++|.|||++|
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWI-HLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWI-HLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeE-ecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 001111111110 00 01234689999983 32 112233456789999999999999998
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.2e-08 Score=83.33 Aligned_cols=86 Identities=30% Similarity=0.356 Sum_probs=72.6
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.....+.++..||++|.|||.++..+.++|+ +|+|+|++ .|+....++.+--..+++.+++++|....++ .
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--P 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--P 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--c
Confidence 345566667889999999999999999999999855 99999999 8999888887655556899999999987764 4
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
.||++|++..
T Consensus 123 ~fd~cVsNlP 132 (315)
T KOG0820|consen 123 RFDGCVSNLP 132 (315)
T ss_pred ccceeeccCC
Confidence 7999999853
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=81.98 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=77.2
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
......+..+|+|||+|+|.++..+++ .+.-+++..|..++++.+++ .++|+++.+|+. -++| . +|+++
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P-~-~D~~~ 163 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLP-V-ADVYL 163 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCS-S-ESEEE
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhc-c-cccee
Confidence 344556678999999999999999988 56669999999888888776 478999999998 4456 4 99999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCC--eEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDD--GIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~--G~~i 127 (306)
...+.|.. .......+++.+.+.|+|| |+++
T Consensus 164 l~~vLh~~-~d~~~~~iL~~~~~al~pg~~g~ll 196 (241)
T PF00891_consen 164 LRHVLHDW-SDEDCVKILRNAAAALKPGKDGRLL 196 (241)
T ss_dssp EESSGGGS--HHHHHHHHHHHHHHSEECTTEEEE
T ss_pred eehhhhhc-chHHHHHHHHHHHHHhCCCCCCeEE
Confidence 87664543 4456668899999999998 9987
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=7e-08 Score=86.80 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=83.4
Q ss_pred HHHHHHHhcc--cCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcC--C-CCeEEEEEceee
Q 021852 10 SYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANG--F-SNVITVLKGKIE 82 (306)
Q Consensus 10 ~~~~ai~~~~--~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~ 82 (306)
.|.+.+.... .....++||.||+|.|.++..+.+. +..+|+++|++ ++++.|++.+..++ + .++++++.+|..
T Consensus 88 ~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~ 167 (336)
T PLN02823 88 VYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR 167 (336)
T ss_pred HHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH
Confidence 3555554321 1234579999999999999988884 56799999999 89999999875432 2 368999999987
Q ss_pred eec-CCCceeeEEEEcccccccCC---cchHHHHHH-HHhhcccCCeEEE
Q 021852 83 EIE-LPVTKVDIIISEWMGYFLLF---ENMLNTVLY-ARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~-~~~~~~D~iv~~~~~~~~~~---~~~~~~~l~-~~~~~L~p~G~~i 127 (306)
... ...++||+|+.+........ .---..+++ .+.+.|+|||+++
T Consensus 168 ~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv 217 (336)
T PLN02823 168 AELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFV 217 (336)
T ss_pred HHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEE
Confidence 753 23468999999853321100 011235666 7789999999987
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=72.69 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=59.9
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcH-HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGI-LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~-l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
.+.+.|.++....++.+|||||||+|. ++..+++.|. .|+|+|++ ..++.+++. .++++.+|+.+..+.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLE 73 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHH
Confidence 345556655545567899999999996 8999998876 99999999 766666553 267899999876532
Q ss_pred -CceeeEEEEc
Q 021852 88 -VTKVDIIISE 97 (306)
Q Consensus 88 -~~~~D~iv~~ 97 (306)
-+.+|+|.+-
T Consensus 74 ~y~~a~liysi 84 (134)
T PRK04148 74 IYKNAKLIYSI 84 (134)
T ss_pred HHhcCCEEEEe
Confidence 3679999983
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.2e-08 Score=88.76 Aligned_cols=113 Identities=26% Similarity=0.223 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
.++...+.........++.+|||+-||.|.+++.+|+. .++|+|+|++ ++++.|+++++.|++.+ ++++.++++++.
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~ 354 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHh
Confidence 34555555555556678899999999999999999975 6699999999 99999999999999965 999999998876
Q ss_pred CC---CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~---~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ...+|+|+.++.-.++ -+.+++.+.+ ++|..+++
T Consensus 355 ~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvY 393 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVY 393 (432)
T ss_pred hhccccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEE
Confidence 32 2478999999874433 3455555543 45555553
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.3e-08 Score=79.14 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee-eecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE-EIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~D~iv~~~~~ 100 (306)
+..-|||||||||+.+..+...|. ..+|+|+| +|++.|.+.--+ -.++.+|+- -++++.+.||-+||-...
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467999999999999999988884 89999999 999999763111 247777874 467778999999884222
Q ss_pred cccCCc--------chHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFE--------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~--------~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.+.+. .-+..++..+...|++|++.+
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV 157 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAV 157 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeE
Confidence 222221 123455667888999999987
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=81.89 Aligned_cols=82 Identities=22% Similarity=0.398 Sum_probs=64.8
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
.+.+.+.....++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.+++++.. ..+++++++|+.+++++ .
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~ 91 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--D 91 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--H
Confidence 34444444567889999999999999999999864 79999999 899999877643 25799999999887643 4
Q ss_pred ee---EEEEccc
Q 021852 91 VD---IIISEWM 99 (306)
Q Consensus 91 ~D---~iv~~~~ 99 (306)
+| +|++++.
T Consensus 92 ~d~~~~vvsNlP 103 (253)
T TIGR00755 92 FPKQLKVVSNLP 103 (253)
T ss_pred cCCcceEEEcCC
Confidence 66 8999864
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-07 Score=87.37 Aligned_cols=111 Identities=15% Similarity=0.039 Sum_probs=84.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 94 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~i 94 (306)
...+|.+|||++||+|.-+..+|.. +...|+|.|++ .-+..+++++++.|+. ++.+.+.|...+. ++ ..||.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~-~~fD~I 187 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALP-ETFDAI 187 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhch-hhcCeE
Confidence 4578999999999999999888873 34589999999 8899999999999995 5889988887653 33 679999
Q ss_pred EEcccccccC----Ccc---------------hHHHHHHHHhhcccCCeEEEecCce
Q 021852 95 ISEWMGYFLL----FEN---------------MLNTVLYARDKWLVDDGIVLPDKAS 132 (306)
Q Consensus 95 v~~~~~~~~~----~~~---------------~~~~~l~~~~~~L~p~G~~ip~~~~ 132 (306)
+.+...++.. ... .-..++..+.++|||||+++-+.|+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9876544221 000 1136677778999999999855544
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-08 Score=80.63 Aligned_cols=103 Identities=21% Similarity=0.188 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
+..+.||.|+|-|..+..+...-+.+|-.+|.. ..++.|++.+.... ....++.+..++++..+..+||+|.+-|+.-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 456999999999999986655447899999988 89999987765422 2357888888988875557999999999866
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+| ...++-.++..+...|+|+|.++
T Consensus 134 hL-TD~dlv~fL~RCk~~L~~~G~Iv 158 (218)
T PF05891_consen 134 HL-TDEDLVAFLKRCKQALKPNGVIV 158 (218)
T ss_dssp GS--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHhCcCCcEEE
Confidence 66 45567789999999999999987
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=78.94 Aligned_cols=107 Identities=24% Similarity=0.162 Sum_probs=77.5
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-c------C----CCCeEEEEEceeeeecC
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-N------G----FSNVITVLKGKIEEIEL 86 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~-~------~----~~~~v~~~~~d~~~~~~ 86 (306)
....++.+||+.|||.|.-...+|+.|. +|+|+|+| ..++.+.+.... . + -.++|++..+|+.++..
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3456778999999999999999999987 99999999 666666332111 0 0 01358999999988763
Q ss_pred CC-ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~-~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ++||+|+=-.... .....+-+...+.+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~l~-Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLC-ALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSSTT-TS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEecccc-cCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 32 4799999754433 3466778888899999999999954
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8e-08 Score=77.84 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=77.4
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.|..+.....|++|||+|+|+|+.++.++++|++.|.+.|+. .....++-+++.|+. .+.+++.|.-. ++..+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~~ 143 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPAF 143 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcce
Confidence 3445556667799999999999999999999999999999998 566677888889986 58888887754 34789
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
|+++..-+ ..+......++. +.+.|+..|..
T Consensus 144 Dl~LagDl---fy~~~~a~~l~~-~~~~l~~~g~~ 174 (218)
T COG3897 144 DLLLAGDL---FYNHTEADRLIP-WKDRLAEAGAA 174 (218)
T ss_pred eEEEeece---ecCchHHHHHHH-HHHHHHhCCCE
Confidence 99997533 223334445555 44555555543
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=78.32 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=75.3
Q ss_pred EEEEEcCCCcHHHHHHHHcC-C--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEEc
Q 021852 26 VVLDVGAGTGILSLFCAKAG-A--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 97 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g-~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~~ 97 (306)
++|++|||.|.....+.+-. . -.|+++|.| .+++..+++...+. .++.....|+..-. .+.+++|+|++-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 79999999999888887732 2 389999998 78888877655443 34444444543322 345899999875
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEEecCceEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 134 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~ 134 (306)
.+.+.+ +.......+..+.++|||||.++...+..|
T Consensus 152 FvLSAi-~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 152 FVLSAI-HPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EEEecc-ChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 443433 445667889999999999999986554433
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=80.84 Aligned_cols=87 Identities=21% Similarity=0.304 Sum_probs=70.8
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc-
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT- 89 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~- 89 (306)
.+.|.......++..|||||+|.|.++..+++.++ +|+|+|++ .++...++... ..++++++++|+....++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhc
Confidence 45555556677799999999999999999999855 79999999 89998888765 23579999999998887622
Q ss_pred eeeEEEEccccccc
Q 021852 90 KVDIIISEWMGYFL 103 (306)
Q Consensus 90 ~~D~iv~~~~~~~~ 103 (306)
.++.||+|.. |..
T Consensus 95 ~~~~vVaNlP-Y~I 107 (259)
T COG0030 95 QPYKVVANLP-YNI 107 (259)
T ss_pred CCCEEEEcCC-Ccc
Confidence 7899999964 544
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-08 Score=78.00 Aligned_cols=75 Identities=11% Similarity=0.025 Sum_probs=60.8
Q ss_pred EEEech-HHHHHHHHHHHHcC--CCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEE
Q 021852 50 YAVECS-QMANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 50 ~~iD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
+|+|.| +|++.|+++.+..+ ..++++++.+|++++++++++||+|++... +.+-.+...+++++.|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG---LRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch---hhcCCCHHHHHHHHHHHcCcCeEE
Confidence 489999 99999987765322 234799999999999888789999998643 334467888999999999999998
Q ss_pred E
Q 021852 127 L 127 (306)
Q Consensus 127 i 127 (306)
+
T Consensus 78 ~ 78 (160)
T PLN02232 78 S 78 (160)
T ss_pred E
Confidence 7
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-07 Score=84.57 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-CCceeeEEEEccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 99 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~iv~~~~ 99 (306)
+.+|||+.||+|..++.+++. |+++|+++|++ +.++.++++++.|+.. +++++++|+..+.. ...+||+|..+++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 358999999999999999985 78899999999 8999999999999985 58999999887642 1357999999874
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ ....+++.+.+.++++|.+.
T Consensus 124 G-------s~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEE
Confidence 2 22357777778889999986
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-07 Score=78.58 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=80.0
Q ss_pred CEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEccc
Q 021852 25 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 99 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~~~ 99 (306)
..+||||||.|.+...+|+ .+...++|||+. ..+..|.+.+.+.++. |+.++..|+..+. .++++.|-|..+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5899999999999888887 566689999988 8888888888999985 7999999998764 34459999887644
Q ss_pred ccccCCcc-----hHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFEN-----MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~-----~~~~~l~~~~~~L~p~G~~i 127 (306)
+...-..+ .-+.++..+.+.|+|||.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 33221111 33578888999999999986
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-07 Score=78.47 Aligned_cols=91 Identities=33% Similarity=0.353 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
...++||||+|.|..+..++.. .++|++.|.| .|... +++.|+ +++ +..++.-.+.+||+|.|--+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~r----L~~kg~----~vl--~~~~w~~~~~~fDvIscLNv-- 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWR----LSKKGF----TVL--DIDDWQQTDFKFDVISCLNV-- 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHH----HHhCCC----eEE--ehhhhhccCCceEEEeehhh--
Confidence 4578999999999999999886 6699999999 78544 444555 333 22223323468999998422
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.....+..+++.+++.|+|+|++|
T Consensus 161 -LDRc~~P~~LL~~i~~~l~p~G~li 185 (265)
T PF05219_consen 161 -LDRCDRPLTLLRDIRRALKPNGRLI 185 (265)
T ss_pred -hhccCCHHHHHHHHHHHhCCCCEEE
Confidence 4444677789999999999999987
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.3e-07 Score=81.16 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------C-------
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------A------- 47 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~---------------------------------~------- 47 (306)
++....+|.......++..++|--||+|-+.+.+|..+. +
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 356777888778888889999999999999999988542 1
Q ss_pred EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc--cCCcchHHHHHH----HHhhcc
Q 021852 48 HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF--LLFENMLNTVLY----ARDKWL 120 (306)
Q Consensus 48 ~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~--~~~~~~~~~~l~----~~~~~L 120 (306)
.++|+|++ .+++.|+.|+++.|+.+.|+|..+|+..+.-+.+.+|+||||+. |+ +..+.....+.. .+.+.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP-YGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC-cchhcCChhhHHHHHHHHHHHHHHHh
Confidence 47899999 89999999999999999999999999998744478999999975 43 223333333433 444555
Q ss_pred cCCeEEE
Q 021852 121 VDDGIVL 127 (306)
Q Consensus 121 ~p~G~~i 127 (306)
+--+..+
T Consensus 335 ~~ws~~v 341 (381)
T COG0116 335 AGWSRYV 341 (381)
T ss_pred cCCceEE
Confidence 5555554
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-07 Score=83.65 Aligned_cols=85 Identities=29% Similarity=0.289 Sum_probs=59.0
Q ss_pred HhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---------
Q 021852 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--------- 85 (306)
Q Consensus 16 ~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 85 (306)
.......++ .|||+-||.|.+++.+|+. +++|+|+|.+ ++++.|+++++.|++. +++++.++++++.
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~ 266 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKALAKAREF 266 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GG
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHHHHhhHHH
Confidence 333444444 8999999999999999996 5699999998 9999999999999995 6999988776542
Q ss_pred -------CCCceeeEEEEccccccc
Q 021852 86 -------LPVTKVDIIISEWMGYFL 103 (306)
Q Consensus 86 -------~~~~~~D~iv~~~~~~~~ 103 (306)
+....+|+|+.+|+-.++
T Consensus 267 ~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 267 NRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp TTGGGS-GGCTTESEEEE---TT-S
T ss_pred HhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 112368999999875544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-07 Score=76.56 Aligned_cols=95 Identities=24% Similarity=0.300 Sum_probs=77.2
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce-eeEEEEcccc
Q 021852 24 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK-VDIIISEWMG 100 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~D~iv~~~~~ 100 (306)
+++++|||+|.|.-++.+|- .+..+|+-+|.. .-+...+...++.+++ +++++++.++++.-. .+ ||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehc-
Confidence 68999999999999888874 445579999987 7788888888888984 699999999998632 34 999999764
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+..+..-+..++++||.++
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcch
Confidence 355667777789999999875
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.2e-07 Score=71.33 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=78.0
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCC
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPV 88 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 88 (306)
.......|.-||++|.|||.++..+...|. ..++++|.| +......+.. +.+.++++|+.++. .++
T Consensus 42 s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 42 SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred hccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhcCC
Confidence 334556688999999999999999988774 479999999 8877776553 34679999998775 346
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..||.|+|....- ......--++++.+...|.+||.++
T Consensus 116 q~~D~viS~lPll-~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 116 QFFDSVISGLPLL-NFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred CeeeeEEeccccc-cCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 7899999964311 1122334467888888899999887
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-07 Score=75.99 Aligned_cols=105 Identities=14% Similarity=0.149 Sum_probs=76.0
Q ss_pred CCCC-EEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC--------CCce
Q 021852 22 FKDK-VVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL--------PVTK 90 (306)
Q Consensus 22 ~~~~-~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~ 90 (306)
.+.. +|||||||||.-+..+|+ .+.-.-.-.|.+ ......+..+...++++-..-+..|+..-.. ..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3344 599999999999988888 555567778877 5556666777777776544445555544321 2358
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||.|++.-|.|.. .......++....++|++||.++
T Consensus 103 ~D~i~~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~ 138 (204)
T PF06080_consen 103 FDAIFCINMLHIS-PWSAVEGLFAGAARLLKPGGLLF 138 (204)
T ss_pred cceeeehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEE
Confidence 9999996665654 44567889999999999999987
|
The function of this family is unknown. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-07 Score=90.34 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=84.9
Q ss_pred HHHHHHHHhcccC-CCCCEEEEEcCCCcHHHHHHHHcC------------------------------------------
Q 021852 9 KSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG------------------------------------------ 45 (306)
Q Consensus 9 ~~~~~ai~~~~~~-~~~~~VLDlG~G~G~l~~~~a~~g------------------------------------------ 45 (306)
+....+|...... .++..++|.+||+|.+.+.+|...
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4566666665555 568899999999999988886520
Q ss_pred -CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC--CceeeEEEEccccccc--CCcchHHHHHHHHhhc
Q 021852 46 -AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYFL--LFENMLNTVLYARDKW 119 (306)
Q Consensus 46 -~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~iv~~~~~~~~--~~~~~~~~~l~~~~~~ 119 (306)
..+++|+|++ .+++.|++++..+|+.+.+++.++|+.++..+ .+++|+|++|+. |+. .....+..+...+...
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP-Yg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP-YGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC-CcCccCchHHHHHHHHHHHHH
Confidence 1269999999 89999999999999988899999999887643 246999999974 432 1223444454444333
Q ss_pred cc---CCeEE
Q 021852 120 LV---DDGIV 126 (306)
Q Consensus 120 L~---p~G~~ 126 (306)
++ +|+.+
T Consensus 334 lk~~~~g~~~ 343 (702)
T PRK11783 334 LKQQFGGWNA 343 (702)
T ss_pred HHHhCCCCeE
Confidence 33 66554
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-07 Score=76.91 Aligned_cols=105 Identities=26% Similarity=0.359 Sum_probs=76.4
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEE-EEEceeeeec--
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVIT-VLKGKIEEIE-- 85 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-- 85 (306)
....|+....-..+|.++||+|+.||.++..+.+.||++|||+|.. ..+..--+ +. .++. .-..+++.+.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR----~d--~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR----ND--PRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh----cC--CcEEEEecCChhhCCHH
Confidence 4456666666678899999999999999999999999999999987 54443211 11 2343 3445555543
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+. +..|+++++. +|. .+..++..+..+++|++.++
T Consensus 140 ~~~-~~~d~~v~Dv--SFI----SL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 140 DFT-EKPDLIVIDV--SFI----SLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred Hcc-cCCCeEEEEe--ehh----hHHHHHHHHHHhcCCCceEE
Confidence 33 4789999985 333 56678888889999999876
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=75.17 Aligned_cols=74 Identities=24% Similarity=0.280 Sum_probs=56.0
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCce-eeEEEEccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTK-VDIIISEWM 99 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~-~D~iv~~~~ 99 (306)
.+|+|+.||.|.-++.+|+. ..+|+|+|++ ..++.|+.+++-.|..++|+++++|+.++. +.... +|+|+.++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 37999999999999999998 5599999999 899999999999999899999999998864 22122 899998764
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-06 Score=72.12 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~ 91 (306)
..+.+++||||.-||.-++..|.+ ...+|+++|++ +..+.+.+..+..|...+|+++++++.+.. .+.+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 567889999999999888877773 24599999999 899999999999999999999999885532 235799
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 135 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~ 135 (306)
|.++.+. +....-....++.+++++||+++.+....+.
T Consensus 151 DfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 9999752 2233346677778999999999866554444
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.6e-07 Score=74.93 Aligned_cols=113 Identities=17% Similarity=0.269 Sum_probs=65.0
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHH-------HHcCC-CCeEEEEEc
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIV-------EANGF-SNVITVLKG 79 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~-------~~~~~-~~~v~~~~~ 79 (306)
.+.+.+. ...+.++.+.+|||||.|...+.+|. .+.++++|||+. ...+.|+... +..+. ..++++.++
T Consensus 30 ~~~~il~-~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 30 FVSKILD-ELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHH-HTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHH-HhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 3344443 35678899999999999999887765 788899999987 5555554322 23333 257888888
Q ss_pred eeeeecCC---CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 80 KIEEIELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 80 d~~~~~~~---~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+.+.+.. -...|+|+++-. . +.+.+...+......||+|.++|
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~---~-F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNT---C-FDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--T---T-T-HHHHHHHHHHHTTS-TT-EEE
T ss_pred CccccHhHhhhhcCCCEEEEecc---c-cCHHHHHHHHHHHhcCCCCCEEE
Confidence 87654311 146899999753 3 23444445566667889999887
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-07 Score=77.65 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=82.4
Q ss_pred HHHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCC---CCeEEEEEceee
Q 021852 10 SYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGF---SNVITVLKGKIE 82 (306)
Q Consensus 10 ~~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~---~~~v~~~~~d~~ 82 (306)
.|.+++... ....+.++||-||.|.|..+..+.+.. ..+|+++|++ .+++.|++.+..... .++++++.+|..
T Consensus 61 ~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~ 140 (246)
T PF01564_consen 61 IYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR 140 (246)
T ss_dssp HHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH
T ss_pred HHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH
Confidence 355555421 122367899999999999999999865 6799999999 899999988765322 258999999997
Q ss_pred eec-CCCc-eeeEEEEcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE-LPVT-KVDIIISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~-~~~~-~~D~iv~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
.+. -..+ +||+|+.+.......... --..+++.+.+.|+|||+++
T Consensus 141 ~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v 188 (246)
T PF01564_consen 141 KFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLV 188 (246)
T ss_dssp HHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred HHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEE
Confidence 753 1224 899999986542211111 23568888999999999997
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-06 Score=74.21 Aligned_cols=106 Identities=24% Similarity=0.277 Sum_probs=82.4
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC--C
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--V 88 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~ 88 (306)
.|.....+.||.+|++-|+|+|.++.++++ ++-.+++..|.. .-++.|++.+++.++++++++++.|+....+. .
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccc
Confidence 344557789999999999999999999999 345699999998 78999999999999999999999999876543 4
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCe-EEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G-~~i 127 (306)
..+|.|+.++. ..+.++=. +...||.+| +++
T Consensus 176 ~~aDaVFLDlP-------aPw~AiPh-a~~~lk~~g~r~c 207 (314)
T KOG2915|consen 176 LKADAVFLDLP-------APWEAIPH-AAKILKDEGGRLC 207 (314)
T ss_pred cccceEEEcCC-------Chhhhhhh-hHHHhhhcCceEE
Confidence 68999998753 22232222 334677665 554
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=71.72 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=72.8
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHH-cCCC--EEEEEec-hHHHHHHHHHHHHcC--------CC-CeEEEEEceeeeecC
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAK-AGAA--HVYAVEC-SQMANMAKQIVEANG--------FS-NVITVLKGKIEEIEL 86 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~-~g~~--~v~~iD~-s~~~~~a~~~~~~~~--------~~-~~v~~~~~d~~~~~~ 86 (306)
++.+|...||+|+|||.|+-++++ .|+. .++|||. ++.++.+++++.+.- +. .++.++.+|......
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 478999999999999999998886 3432 4499995 499999999886543 21 467888999988776
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+..+||.|.+.. ....+.+++...|++||.++
T Consensus 159 e~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 159 EQAPYDAIHVGA---------AASELPQELLDQLKPGGRLL 190 (237)
T ss_pred ccCCcceEEEcc---------CccccHHHHHHhhccCCeEE
Confidence 678999999742 11223334446778888765
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-06 Score=73.53 Aligned_cols=106 Identities=13% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CC--CceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LP--VTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~-~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~~~D~i 94 (306)
...-+||||.||.|...+-+.. .+ ..+|...|.| ..++..++.++++|+.+.++|.++|+.+.. +. ..+.+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4567999999999988777765 33 3589999999 789999999999999887799999987653 11 2456887
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...+...+.....+...+..+.+.+.|||.+|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 775442223233456778888999999999998
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=76.15 Aligned_cols=114 Identities=18% Similarity=0.031 Sum_probs=81.4
Q ss_pred HHHHHHHhccc--CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc--CCC-CeEEEEEceeee
Q 021852 10 SYQNVIYQNKF--LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN--GFS-NVITVLKGKIEE 83 (306)
Q Consensus 10 ~~~~ai~~~~~--~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~--~~~-~~v~~~~~d~~~ 83 (306)
.|.+.|.+-.- -...++||-+|.|-|..+..+.++.. +|+-||++ ++++.+++.+... ++. +|++++.. +.+
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~ 134 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD 134 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh
Confidence 56666654222 24568999999999999999999864 99999999 8999998854321 232 57887762 211
Q ss_pred ecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEE
Q 021852 84 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 135 (306)
Q Consensus 84 ~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~ 135 (306)
...++||+||.+.. .-+.+.+.+.+.|+|||+++-+..+.+.
T Consensus 135 --~~~~~fDVIIvDs~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 135 --LDIKKYDLIICLQE--------PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred --ccCCcCCEEEEcCC--------CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 12378999999742 1145677788999999999866554443
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=76.66 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=81.7
Q ss_pred CEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcC--C-CCeEEEEEceeeeecC-CCceeeEEEEcc
Q 021852 25 KVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANG--F-SNVITVLKGKIEEIEL-PVTKVDIIISEW 98 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~-~~~~~D~iv~~~ 98 (306)
++||-||.|.|..+..+.+.. ..+++.+|++ .+++.+++.+.... . ..|++++.+|..++.- ...+||+|+.+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999964 6799999999 89999999875332 2 2689999999877642 224899999976
Q ss_pred cccccCCcc-hHHHHHHHHhhcccCCeEEEecCc
Q 021852 99 MGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDKA 131 (306)
Q Consensus 99 ~~~~~~~~~-~~~~~l~~~~~~L~p~G~~ip~~~ 131 (306)
.+.....+. .-..+++.+.+.|+++|+++-+..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 444211111 125788889999999999984433
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-07 Score=78.16 Aligned_cols=98 Identities=19% Similarity=0.286 Sum_probs=81.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
...++|||||.|.++..+...|..+++-+|.| .|++.++.. +.+++ .+....+|-+.+++.+.++|+|++.+-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSls--- 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLS--- 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhh---
Confidence 45899999999999999988888899999999 999988653 34454 456677788888888899999999764
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++..+++.....+...|||+|.+|
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccch
Confidence 4455788888888889999999998
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7e-07 Score=73.89 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=74.3
Q ss_pred HHHHHHHHHHH---hcccCCCCCEEEEEcCCCcHHHHHHHHc-CC-CEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 6 VRTKSYQNVIY---QNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 6 ~R~~~~~~ai~---~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~-~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
-|.++..+.++ +..-+.++.+|+|||+-+|.++..+++. +. .+|+|+|+.+|-.. ..|.++++|
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d 93 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGD 93 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeee
Confidence 34445455443 3344567899999999999999999984 33 25999998754222 248899999
Q ss_pred eeeec--------CCCceeeEEEEcccccccCC--------cchHHHHHHHHhhcccCCeEEE
Q 021852 81 IEEIE--------LPVTKVDIIISEWMGYFLLF--------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 81 ~~~~~--------~~~~~~D~iv~~~~~~~~~~--------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++-. ++..++|+|+|++....... ......+++-...+|+|||.++
T Consensus 94 ~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 94 ITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred ccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 87654 34456899999875421111 1122234445567999999987
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-07 Score=75.60 Aligned_cols=94 Identities=28% Similarity=0.355 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--------CC--Cce
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LP--VTK 90 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~--~~~ 90 (306)
++.+|||+||++|.++..+.+.+ ..+|+|+|...+ ... ..+..+.+|+.+.. ++ .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 44899999999999999999987 679999998744 111 24666677765432 11 268
Q ss_pred eeEEEEcccccccCC----c----chHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLF----E----NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~----~----~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+|+........ + ......+..+..+|+|||.++
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 999999863222211 1 111122334457899999876
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.8e-06 Score=71.16 Aligned_cols=102 Identities=26% Similarity=0.329 Sum_probs=70.9
Q ss_pred EEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccccC
Q 021852 27 VLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 104 (306)
Q Consensus 27 VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~ 104 (306)
|.||||-.|.+++.+.+.| +.+++|+|++ .-++.|+++++.+++.++++++.+|-.+.--+.+.+|.|+...||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 6899999999999999977 4589999999 8899999999999999999999999654322334489988865543
Q ss_pred CcchHHHHHHHHhhcccCCeEEEecCceEEEEEeec
Q 021852 105 FENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 140 (306)
Q Consensus 105 ~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~ 140 (306)
.....++.+....++....+| ++|...
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lI-------LqP~~~ 104 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLI-------LQPNTH 104 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEE-------EEESS-
T ss_pred --HHHHHHHHhhHHHhccCCeEE-------EeCCCC
Confidence 345567776666666555665 666654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.38 E-value=6e-06 Score=71.67 Aligned_cols=119 Identities=21% Similarity=0.222 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHhcccC-------CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH----cC---
Q 021852 5 VVRTKSYQNVIYQNKFL-------FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA----NG--- 69 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~~~-------~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~----~~--- 69 (306)
..|...|...+...... ..+.+||--|||.|.|+..+|+.|. .+.|.|.| -|+-...-.+.. +.
T Consensus 31 ~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I 109 (270)
T PF07942_consen 31 EERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTI 109 (270)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEE
Confidence 45666666555432222 3357999999999999999999988 99999999 786554443321 10
Q ss_pred --------------------------------CCCeEEEEEceeeeecCCC---ceeeEEEEcccccccCCcchHHHHHH
Q 021852 70 --------------------------------FSNVITVLKGKIEEIELPV---TKVDIIISEWMGYFLLFENMLNTVLY 114 (306)
Q Consensus 70 --------------------------------~~~~v~~~~~d~~~~~~~~---~~~D~iv~~~~~~~~~~~~~~~~~l~ 114 (306)
-..+.....+|+.++-.+. +++|+|++. +|+.....+-..++
T Consensus 110 ~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~ 186 (270)
T PF07942_consen 110 YPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIE 186 (270)
T ss_pred ecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHH
Confidence 0123444445555543333 699999985 56766677888999
Q ss_pred HHhhcccCCeEEE
Q 021852 115 ARDKWLVDDGIVL 127 (306)
Q Consensus 115 ~~~~~L~p~G~~i 127 (306)
.+.++|||||..|
T Consensus 187 tI~~lLkpgG~WI 199 (270)
T PF07942_consen 187 TIEHLLKPGGYWI 199 (270)
T ss_pred HHHHHhccCCEEE
Confidence 9999999999877
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.7e-06 Score=68.46 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHHh-cc---cCCCCCEEEEEcCCCc----HHHHHHHH---cCC---CEEEEEech-HHHHHHHHHH---
Q 021852 4 DVVRTKSYQNVIYQ-NK---FLFKDKVVLDVGAGTG----ILSLFCAK---AGA---AHVYAVECS-QMANMAKQIV--- 65 (306)
Q Consensus 4 D~~R~~~~~~ai~~-~~---~~~~~~~VLDlG~G~G----~l~~~~a~---~g~---~~v~~iD~s-~~~~~a~~~~--- 65 (306)
|..--+.+.+.+.. .. ...+.-+|+..||+|| .+++.+.+ ... -+|+|.|+| .+++.|++-.
T Consensus 8 d~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~ 87 (196)
T PF01739_consen 8 DPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPE 87 (196)
T ss_dssp TTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEG
T ss_pred CHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCH
Confidence 33444555555551 11 1224569999999999 45566655 112 289999999 8888887621
Q ss_pred -----------HHc-------------CCCCeEEEEEceeeeecCCCceeeEEEEc-ccccccCCcchHHHHHHHHhhcc
Q 021852 66 -----------EAN-------------GFSNVITVLKGKIEEIELPVTKVDIIISE-WMGYFLLFENMLNTVLYARDKWL 120 (306)
Q Consensus 66 -----------~~~-------------~~~~~v~~~~~d~~~~~~~~~~~D~iv~~-~~~~~~~~~~~~~~~l~~~~~~L 120 (306)
++. .+.++|+|.+.|+.+...+.+.||+|+|- .+.|+ .+.....+++.+.+.|
T Consensus 88 ~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L 165 (196)
T PF01739_consen 88 RSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSL 165 (196)
T ss_dssp GGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS---HHHHHHHHHHHGGGE
T ss_pred HHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHc
Confidence 000 01246888888887732345899999995 44333 5566788999999999
Q ss_pred cCCeEEE
Q 021852 121 VDDGIVL 127 (306)
Q Consensus 121 ~p~G~~i 127 (306)
+|||.++
T Consensus 166 ~pgG~L~ 172 (196)
T PF01739_consen 166 KPGGYLF 172 (196)
T ss_dssp EEEEEEE
T ss_pred CCCCEEE
Confidence 9999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=76.95 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=66.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
..+|.++|||||++|.++..+++.|+ +|+|||...|..... .+ ++|+.+..+......+.+.+|.++|++.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~----~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLM----DT---GQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhh----CC---CCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46899999999999999999999988 999999776654432 22 4688888887665432578999999874
Q ss_pred cccCCcchHHHHHHHHhhcccCC
Q 021852 101 YFLLFENMLNTVLYARDKWLVDD 123 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~ 123 (306)
..+..+.+-+.++|..|
T Consensus 280 ------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------cCHHHHHHHHHHHHhcC
Confidence 23345556666777665
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=78.95 Aligned_cols=109 Identities=26% Similarity=0.266 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE- 85 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 85 (306)
.+.+...|.....+..++.++|+.||||.+++.+|+ ++++|+|+|++ +.++.|+++++.||++ +.+|+.+.++++-
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFP 445 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccc
Confidence 355666777777888899999999999999999998 48899999999 8999999999999996 6999999777653
Q ss_pred --CC--Cceee-EEEEcccccccCCcchHHHHHHHHhhcccCC
Q 021852 86 --LP--VTKVD-IIISEWMGYFLLFENMLNTVLYARDKWLVDD 123 (306)
Q Consensus 86 --~~--~~~~D-~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~ 123 (306)
+. .++=+ +++.++.- .+.-..++.+++++-.+-
T Consensus 446 sl~~~~~~~~~~v~iiDPpR-----~Glh~~~ik~l~~~~~~~ 483 (534)
T KOG2187|consen 446 SLLTPCCDSETLVAIIDPPR-----KGLHMKVIKALRAYKNPR 483 (534)
T ss_pred hhcccCCCCCceEEEECCCc-----ccccHHHHHHHHhccCcc
Confidence 11 12345 56666542 233345566554443343
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.5e-06 Score=80.33 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEcc
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~ 98 (306)
.+..+||||||.|.+...+|+ .+...++|+|.. ..+..+.+.+...++. |+.++..++..+. +++.++|.|..+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 467999999999999888888 456689999988 7666666677778884 6888888875432 5668899999864
Q ss_pred cccccCCc-----chHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFE-----NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~-----~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+.-.. -.-+.++..+.+.|+|||.+.
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 44332111 123578888999999999985
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-06 Score=70.78 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=57.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
..++.+|.|+|||-+.++..+.+ .-+|+..|.-. .| + .++.+|+..+|++++++|++|.-+-
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------~n---~--~Vtacdia~vPL~~~svDv~VfcLS- 131 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------PN---P--RVTACDIANVPLEDESVDVAVFCLS- 131 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------SS---T--TEEES-TTS-S--TT-EEEEEEES--
T ss_pred cCCCEEEEECCCchHHHHHhccc--CceEEEeeccC----------CC---C--CEEEecCccCcCCCCceeEEEEEhh-
Confidence 34567999999999999854432 22799999641 11 2 3677999999999999999997431
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeecc
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 141 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~ 141 (306)
+ .-.++..++.++.|.|||||.+. ++.+.++
T Consensus 132 --L-MGTn~~~fi~EA~RvLK~~G~L~-------IAEV~SR 162 (219)
T PF05148_consen 132 --L-MGTNWPDFIREANRVLKPGGILK-------IAEVKSR 162 (219)
T ss_dssp -----SS-HHHHHHHHHHHEEEEEEEE-------EEEEGGG
T ss_pred --h-hCCCcHHHHHHHHheeccCcEEE-------EEEeccc
Confidence 1 22467889999999999999996 6666654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-06 Score=75.53 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCc----HHHHHHHHc-C----CCEEEEEech-HHHHHHHHHH------------------HH-----cC-
Q 021852 24 DKVVLDVGAGTG----ILSLFCAKA-G----AAHVYAVECS-QMANMAKQIV------------------EA-----NG- 69 (306)
Q Consensus 24 ~~~VLDlG~G~G----~l~~~~a~~-g----~~~v~~iD~s-~~~~~a~~~~------------------~~-----~~- 69 (306)
.-+|+..||+|| .+++.+.+. + .-+|+|+|+| .+++.|++-. .+ .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 469999999999 456666553 1 2379999999 8998887641 00 01
Q ss_pred ------CCCeEEEEEceeeeecCC-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 ------FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 ------~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...|+|...|+.+.+++ .+.||+|+|.-+..++ .......++..+.+.|+|||.++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~ 259 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLF 259 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 224577888887664332 4789999995332222 44567889999999999999987
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-05 Score=72.50 Aligned_cols=114 Identities=20% Similarity=0.103 Sum_probs=85.2
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHcC---CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCce
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 90 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~g---~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~ 90 (306)
.....+|.+|||+.++.|.=+..+|+.. ...|+|+|.+ .-+...++++++.|+.+ +.+++.|...+. ...++
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCc
Confidence 3567889999999999998888888842 2367999999 78999999999999965 778888876543 22236
Q ss_pred eeEEEEcccccccCCc------------c-------hHHHHHHHHhhcccCCeEEEecCce
Q 021852 91 VDIIISEWMGYFLLFE------------N-------MLNTVLYARDKWLVDDGIVLPDKAS 132 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~------------~-------~~~~~l~~~~~~L~p~G~~ip~~~~ 132 (306)
||.|+.+...++..-. . .-..++.+..++|||||.++-+.|+
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 9999998754432211 0 1236788888999999999944443
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-06 Score=74.23 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
+....+.|.+.....++..|||+|+|+|.++..+++.+ ++|+++|.+ .+++..++... -.++++++++|+.++..
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhcccc
Confidence 34455556555566689999999999999999999987 799999999 88888887654 22579999999988875
Q ss_pred CC---ceeeEEEEccc
Q 021852 87 PV---TKVDIIISEWM 99 (306)
Q Consensus 87 ~~---~~~D~iv~~~~ 99 (306)
+. .....|+++..
T Consensus 91 ~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLP 106 (262)
T ss_dssp GGHCSSSEEEEEEEET
T ss_pred HHhhcCCceEEEEEec
Confidence 52 36778888864
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.9e-06 Score=74.02 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=63.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCC--cee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPV--TKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~--~~~ 91 (306)
....++.+++|.+||.|..+..+++.. ..+|+|+|.+ ++++.|++.+.. .+++++++++..++. ++. .++
T Consensus 15 L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 15 LAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred hCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCcc
Confidence 445678899999999999999999853 4699999999 899999988754 368999999998764 222 279
Q ss_pred eEEEEcc
Q 021852 92 DIIISEW 98 (306)
Q Consensus 92 D~iv~~~ 98 (306)
|.|+.+.
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9999874
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.1e-06 Score=71.32 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCc----HHHHHHHHcC------CCEEEEEech-HHHHHHHHHHHH-----cC-----------------
Q 021852 23 KDKVVLDVGAGTG----ILSLFCAKAG------AAHVYAVECS-QMANMAKQIVEA-----NG----------------- 69 (306)
Q Consensus 23 ~~~~VLDlG~G~G----~l~~~~a~~g------~~~v~~iD~s-~~~~~a~~~~~~-----~~----------------- 69 (306)
..-+|+-.||+|| .+++.+.+.+ .-+|+|.|+| .+++.|++-+-. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3579999999999 5566666643 2389999999 888888652110 11
Q ss_pred ------CCCeEEEEEceeeeecCCCceeeEEEE-cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 ------FSNVITVLKGKIEEIELPVTKVDIIIS-EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 ------~~~~v~~~~~d~~~~~~~~~~~D~iv~-~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...|.|...|+.+-....+.||+|+| |.+.|+ .+..-..++......|+|||.++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~Lf 238 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLF 238 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEE
Confidence 112355555555443312377999999 455443 55667789999999999999997
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.7e-06 Score=70.04 Aligned_cols=90 Identities=16% Similarity=0.239 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
....+|.|+|||-+.++. . -...|+..|.-. -+-.++.+|+.+++++++++|++|.-+ +
T Consensus 179 ~~~~vIaD~GCGEakiA~---~-~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CL--S 237 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---S-ERHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCL--S 237 (325)
T ss_pred cCceEEEecccchhhhhh---c-cccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeH--h
Confidence 456799999999988765 2 133799988631 124678899999999999999999732 1
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeecc
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 141 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~ 141 (306)
+ .-.++..++.++.|.|++||.+. ++.+.+.
T Consensus 238 -L-Mgtn~~df~kEa~RiLk~gG~l~-------IAEv~SR 268 (325)
T KOG3045|consen 238 -L-MGTNLADFIKEANRILKPGGLLY-------IAEVKSR 268 (325)
T ss_pred -h-hcccHHHHHHHHHHHhccCceEE-------EEehhhh
Confidence 1 12467789999999999999985 6666653
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=71.76 Aligned_cols=113 Identities=20% Similarity=0.138 Sum_probs=70.2
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc--------CCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeeee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEEI 84 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~--------g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~ 84 (306)
+.+.....++.+|+|-.||+|.+...+.+. ...+++|+|++ .++..|+-++.-++... +..+..+|....
T Consensus 38 ~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~ 117 (311)
T PF02384_consen 38 MVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN 117 (311)
T ss_dssp HHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS
T ss_pred HHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc
Confidence 333334556779999999999998877662 45589999999 78888887776666543 245777776443
Q ss_pred cCC--CceeeEEEEccccccc--CCc----------------chHHHHHHHHhhcccCCeEEE
Q 021852 85 ELP--VTKVDIIISEWMGYFL--LFE----------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~--~~~~D~iv~~~~~~~~--~~~----------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. ..+||+|+++++.... ... ..--.++....+.|++||++.
T Consensus 118 ~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 118 DKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp HSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 322 3689999999742222 000 011146667779999999865
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=67.56 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=66.8
Q ss_pred HHHhcccCCCCC--EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc------C--CCCeEEEEEceee
Q 021852 14 VIYQNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN------G--FSNVITVLKGKIE 82 (306)
Q Consensus 14 ai~~~~~~~~~~--~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~------~--~~~~v~~~~~d~~ 82 (306)
.|.++..+.+|. +|||+-+|+|..++.++..|++ |+++|.+ .++...++.+++. + +..+++++++|..
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 344444566777 9999999999999999999985 9999998 6777777777763 2 2257999999987
Q ss_pred eecC-CCceeeEEEEccccc
Q 021852 83 EIEL-PVTKVDIIISEWMGY 101 (306)
Q Consensus 83 ~~~~-~~~~~D~iv~~~~~~ 101 (306)
++.- ...+||+|+.++|..
T Consensus 156 ~~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 156 TALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred HHHhhCCCCCcEEEECCCCC
Confidence 7531 124799999998743
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=63.76 Aligned_cols=75 Identities=21% Similarity=0.397 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-----cCCCEEEEEech-HHHHHHHHHHHHcC--CCCeEEEEEceeeeecCCCceee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK-----AGAAHVYAVECS-QMANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~-----~g~~~v~~iD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
..+..+|+|+|||.|.+++.++. ....+|+++|.+ ...+.+++..++.+ +..++++..++..+... ....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 36778999999999999999998 545699999988 88888888887776 54567777766654432 36677
Q ss_pred EEEE
Q 021852 93 IIIS 96 (306)
Q Consensus 93 ~iv~ 96 (306)
++++
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 7776
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-05 Score=69.21 Aligned_cols=77 Identities=26% Similarity=0.285 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCc-HHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHc-CCCCeEEEEEceeeeec-----CCCceeeEE
Q 021852 24 DKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEAN-GFSNVITVLKGKIEEIE-----LPVTKVDII 94 (306)
Q Consensus 24 ~~~VLDlG~G~G-~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~-----~~~~~~D~i 94 (306)
..++||||||.. +..+..++ .|. +++|.|++ ..++.|++++++| ++.++|+++...-.... .+.+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 568999999974 66777766 455 99999999 8999999999999 99999999876533221 234789999
Q ss_pred EEccccc
Q 021852 95 ISEWMGY 101 (306)
Q Consensus 95 v~~~~~~ 101 (306)
+|++..|
T Consensus 182 mCNPPFy 188 (299)
T PF05971_consen 182 MCNPPFY 188 (299)
T ss_dssp EE-----
T ss_pred ecCCccc
Confidence 9998643
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.3e-06 Score=78.11 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcccC--CCC--CEEEEEcCCCcHHHHHHHHcCCCEEEEEec---h-HHHHHHHHHHHHcCCCCeEEEEEc
Q 021852 8 TKSYQNVIYQNKFL--FKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVEC---S-QMANMAKQIVEANGFSNVITVLKG 79 (306)
Q Consensus 8 ~~~~~~ai~~~~~~--~~~--~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~---s-~~~~~a~~~~~~~~~~~~v~~~~~ 79 (306)
...|.+.|.+.... ..+ .++||+|||+|.++..+...+. .+..+-. . ..+..|.+ .|++.-+.+ .
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~~--~ 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIGV--L 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhhh--h
Confidence 45677777766544 223 4899999999999999988765 3333322 2 23444433 355332221 1
Q ss_pred eeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEE
Q 021852 80 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 134 (306)
Q Consensus 80 d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~ 134 (306)
-...+++|...||+|.|.-... .....-..++-++.|+|+|||.++-+...++
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i--~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLI--PWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccCCccchhhhhcccccc--cchhcccceeehhhhhhccCceEEecCCccc
Confidence 2456888999999999853211 1111112467788999999999996655555
|
; GO: 0008168 methyltransferase activity |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=63.06 Aligned_cols=57 Identities=32% Similarity=0.465 Sum_probs=49.4
Q ss_pred EEEEEcCCCcHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 26 VVLDVGAGTGILSLFCAKAGAA-HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g~~-~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
++||+|||.|.+++.+++.+.. +|+++|.+ .+.+.++++++.|+++ ++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 4899999999999999987654 89999998 8999999999999885 48888877654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-05 Score=69.89 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=86.6
Q ss_pred HHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHH--HH---HcCCC-CeEEEEEce
Q 021852 11 YQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQI--VE---ANGFS-NVITVLKGK 80 (306)
Q Consensus 11 ~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~--~~---~~~~~-~~v~~~~~d 80 (306)
|.+.+..- ..+..-.+||-+|.|-|.....+.+.+ ..+++-+|.+ +|++.++++ ++ .+.+. .+++++..|
T Consensus 275 YhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD 354 (508)
T COG4262 275 YHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD 354 (508)
T ss_pred hhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc
Confidence 55555421 112445689999999999999999976 7799999999 899999843 22 22233 589999999
Q ss_pred eeeec-CCCceeeEEEEcccccccCCcc--hHHHHHHHHhhcccCCeEEEecCceEEEE
Q 021852 81 IEEIE-LPVTKVDIIISEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDKASLYLT 136 (306)
Q Consensus 81 ~~~~~-~~~~~~D~iv~~~~~~~~~~~~--~~~~~l~~~~~~L~p~G~~ip~~~~~~~~ 136 (306)
+.++. -..+.||.||.+..+..-.... --..+..-+.+.|+++|.++.+..+.|..
T Consensus 355 Af~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t 413 (508)
T COG4262 355 AFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT 413 (508)
T ss_pred HHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC
Confidence 98764 2346899999976543221111 11245556678999999999665554443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-05 Score=63.59 Aligned_cols=99 Identities=23% Similarity=0.362 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC--CeEEEEEceeeeec--CCCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS--NVITVLKGKIEEIE--LPVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~--~~~~~~D~iv~ 96 (306)
.+|.+||.+|-|-|+..-.+.++...+=+.||.. +.++..++ +|+. ++|.++.+.+++.. ++++.||-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhccccccCcceeEe
Confidence 7899999999999999998888776677788987 77766554 4543 57888999888754 66788999997
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+..+ -++ .++..+.+.+.++|||+|++-
T Consensus 176 DTy~--e~y-Edl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 176 DTYS--ELY-EDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred echh--hHH-HHHHHHHHHHhhhcCCCceEE
Confidence 6531 223 345557777889999999975
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.2e-05 Score=68.36 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=81.7
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 93 (306)
....++..|||+.++.|.=+..+++ .+ ...|+|.|.+ .-+...++++++.|.. ++.++..|..... .....||.
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccch
Confidence 4567889999999999999888887 33 5699999998 8899999999999985 5778878877662 23346999
Q ss_pred EEEcccccccC--C-cc----------------hHHHHHHHHhhcc----cCCeEEE
Q 021852 94 IISEWMGYFLL--F-EN----------------MLNTVLYARDKWL----VDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~--~-~~----------------~~~~~l~~~~~~L----~p~G~~i 127 (306)
|+.+...++.. . .+ .-..+++...+++ +|||+++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence 99986544431 0 01 1126677788999 9999998
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.5e-06 Score=63.03 Aligned_cols=98 Identities=22% Similarity=0.342 Sum_probs=43.1
Q ss_pred EEEcCCCcHHHHHHHHc----CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEccccc
Q 021852 28 LDVGAGTGILSLFCAKA----GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGY 101 (306)
Q Consensus 28 LDlG~G~G~l~~~~a~~----g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~~ 101 (306)
||+|+..|..++.+++. +..+++++|..+..+.+++.+++.++.++++++.++..+.. ++.+++|+++.+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 68999999888777662 22379999987435556666666777778999999987642 33478999998742
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+........+..+.+.|+|||+++.+
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 11234445566777899999999843
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=60.54 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=71.1
Q ss_pred HHHHHHHHh---cccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 9 KSYQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 9 ~~~~~ai~~---~~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
.....+|.. ...+.+|.+||-+|+.+|.-...++. .| ...|||+|.| ...+..-..+++. .||-.+-.|++
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDAR 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TT
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCC
Confidence 455666653 35678899999999999998888888 45 5699999988 4433333333333 35666777876
Q ss_pred eec---CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~---~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
... .--+.+|+|+++.. .......+...+..+||+||.++
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEE
Confidence 432 11368999999742 33556667777888999999986
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.3e-05 Score=66.28 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~~ 97 (306)
...+|+|.-||.|.-++..|..+. .|++||++ .-+..|+++++-.|++++|+|+++|+.++- +....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 556899999999988888888766 99999999 789999999999999999999999987653 344567888876
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCe
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDG 124 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G 124 (306)
+... +.+-+..-+..+..+++|.|
T Consensus 173 ppwg---gp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 173 PPWG---GPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCC---CcchhhhhhhhhhhhcchhH
Confidence 4322 22222323333445555554
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.86 E-value=9e-05 Score=71.39 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC---------CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAG---------AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 87 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g---------~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 87 (306)
...+|||.|||+|.+...+++.. ..+++|+|++ ..+..++.++...+. ..+.+...+..... -.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999988887621 1478999999 888999888876651 13455555533211 01
Q ss_pred CceeeEEEEccc
Q 021852 88 VTKVDIIISEWM 99 (306)
Q Consensus 88 ~~~~D~iv~~~~ 99 (306)
.++||+||+||+
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999985
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.8e-06 Score=63.79 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=79.2
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCC-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCC--CeEEEEEceeeee
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFS--NVITVLKGKIEEI 84 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~ 84 (306)
+..-.+.+......|.+||++|.| +|+.++++|. +..+.|...|-+ +.++..++....|..+ .++.++.-+....
T Consensus 16 ala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a 95 (201)
T KOG3201|consen 16 ALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA 95 (201)
T ss_pred HHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh
Confidence 344445544555667899999999 5788888887 667789999977 7888888877766432 2343443333221
Q ss_pred c--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 E--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .....||+|++.- +++.......+.+.+.++|+|.|.-+
T Consensus 96 qsq~eq~tFDiIlaAD---ClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 96 QSQQEQHTFDIILAAD---CLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred HHHHhhCcccEEEecc---chhHHHHHHHHHHHHHHHhCccccee
Confidence 1 2345899999963 34444566788899999999999854
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00032 Score=58.45 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 6 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
.|-.+..+.+. .+.+++|+||-.|.++..+.+. .+..+++.|++ .-++.|.+++.++++.+++++..+|...
T Consensus 5 ~RL~~va~~V~------~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~ 78 (226)
T COG2384 5 KRLTTVANLVK------QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA 78 (226)
T ss_pred HHHHHHHHHHH------cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc
Confidence 34455555544 4556999999999999999984 47799999998 8899999999999999999999999854
Q ss_pred ecCCCceeeEEEEcccccccCCcchHHHHHHHHhhccc
Q 021852 84 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 121 (306)
Q Consensus 84 ~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~ 121 (306)
.--+++.+|+|+...||- .....++.+....|+
T Consensus 79 ~l~~~d~~d~ivIAGMGG-----~lI~~ILee~~~~l~ 111 (226)
T COG2384 79 VLELEDEIDVIVIAGMGG-----TLIREILEEGKEKLK 111 (226)
T ss_pred ccCccCCcCEEEEeCCcH-----HHHHHHHHHhhhhhc
Confidence 433445899998865533 344556666555554
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.2e-05 Score=56.23 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=56.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
..++++|+|||++-|..++..+..||++|+++|.+ .+.+..+++++.+.+-++..-.. + ++-.-+.+|+.+.+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-e---W~~~Y~~~Di~~iD 99 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-E---WNGEYEDVDIFVMD 99 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc-c---ccccCCCcceEEEE
Confidence 45789999999999999999999999999999999 78889999888775543332222 2 22233678988864
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.3e-05 Score=57.92 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=56.3
Q ss_pred EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEcccccccCCcc-------hHHHHHHHHh
Q 021852 48 HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFEN-------MLNTVLYARD 117 (306)
Q Consensus 48 ~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~~~~~~~~-------~~~~~l~~~~ 117 (306)
+|+|.|+- +.++.++++++..++.+++++++.+-+.+. ++.+++|+++.|. ||...+.. .--..++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999998 899999999999999889999998887765 3434899999984 66443322 1124566677
Q ss_pred hcccCCeEEE
Q 021852 118 KWLVDDGIVL 127 (306)
Q Consensus 118 ~~L~p~G~~i 127 (306)
++|+|||+++
T Consensus 80 ~lL~~gG~i~ 89 (140)
T PF06962_consen 80 ELLKPGGIIT 89 (140)
T ss_dssp HHEEEEEEEE
T ss_pred HhhccCCEEE
Confidence 8999999986
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00031 Score=61.77 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=60.9
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-c-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
.......+|||+|||+|.....+.. . ...+++++|.| .|++.++..++...-............+. .+..+.|+|+
T Consensus 29 ~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~DLvi 107 (274)
T PF09243_consen 29 LPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF-LPFPPDDLVI 107 (274)
T ss_pred CcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc-ccCCCCcEEE
Confidence 3456678999999999976655554 2 35589999999 89999988765432211111111111111 1223449999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccC
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVD 122 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p 122 (306)
+.-+..-+.. .....+++.+.+.+.+
T Consensus 108 ~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 108 ASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred EehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 8644333433 4555666666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00052 Score=53.83 Aligned_cols=95 Identities=26% Similarity=0.369 Sum_probs=63.1
Q ss_pred EEEEcCCCcHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee--ecCCC-ceeeEEEEcccc
Q 021852 27 VLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE--IELPV-TKVDIIISEWMG 100 (306)
Q Consensus 27 VLDlG~G~G~l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~~D~iv~~~~~ 100 (306)
++|+|||+|... .+++... ..++++|.+ .++..++......+. ..+.+...+... +++.. ..+|++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999877 4444322 389999988 777775444332221 116777777766 55554 489999443221
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. . ....+..+.+.++|+|.++
T Consensus 130 ~~~---~-~~~~~~~~~~~l~~~g~~~ 152 (257)
T COG0500 130 HLL---P-PAKALRELLRVLKPGGRLV 152 (257)
T ss_pred hcC---C-HHHHHHHHHHhcCCCcEEE
Confidence 111 1 6778888889999999887
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00017 Score=58.26 Aligned_cols=98 Identities=22% Similarity=0.328 Sum_probs=62.0
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEc-eeeeec--------CC
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKG-KIEEIE--------LP 87 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~--------~~ 87 (306)
.-+.|+.+|||+||..|.++..+.+. +...|.|+|+-... .. ..++++.+ |+++.. +|
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~-~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PP-EGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CC-CCcccccccccCCHHHHHHHHHhCC
Confidence 44678999999999999999999883 56689999964210 11 12445544 444321 56
Q ss_pred CceeeEEEEcccccccC-----CcchH---HHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLL-----FENML---NTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~-----~~~~~---~~~l~~~~~~L~p~G~~i 127 (306)
+.++|+|+|++...... +.... .+++.-...+++|+|.++
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 78999999987543211 11111 122333346788999886
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00045 Score=60.28 Aligned_cols=102 Identities=17% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCcHH-HHHHHH-cC-CCEEEEEech-HHHHHHHHHHH-HcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 24 DKVVLDVGAGTGIL-SLFCAK-AG-AAHVYAVECS-QMANMAKQIVE-ANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 24 ~~~VLDlG~G~G~l-~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
.++|+=||||.=.+ ++.+++ .+ ...|+++|++ +.++.+++.++ ..+++.+++++.+|..+....-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999998655 555665 33 3479999999 89999998887 66788889999999987764446899988754
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+- .........++..+.+.++||+.++
T Consensus 201 lV--g~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 201 LV--GMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp T---S----SHHHHHHHHHHHS-TTSEEE
T ss_pred hc--ccccchHHHHHHHHHhhCCCCcEEE
Confidence 21 1123366789999999999999987
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.6e-05 Score=67.48 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=84.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++..++|+|||-|..+...+..+...+++++.+ -.+..+.......++.++..++.+++...++++..||.+-+.
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 3456777999999999999999999777799999987 556666555555566666667888888888888999999874
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
- ...+.+....++.++.+.++|||..+
T Consensus 186 d---~~~~~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 186 E---VVCHAPDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred e---ecccCCcHHHHHHHHhcccCCCceEE
Confidence 3 24456788899999999999999987
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00018 Score=62.20 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=64.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC---------------------------C
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF---------------------------S 71 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~---------------------------~ 71 (306)
...+|.++||||||+-+.....|..-+.+++..|.+ ...+..++-++..+. .
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 345688999999999777555555447789999977 555444443322110 0
Q ss_pred CeE-EEEEceeeeec-CCC-----ceeeEEEEcccccc-cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 72 NVI-TVLKGKIEEIE-LPV-----TKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 72 ~~v-~~~~~d~~~~~-~~~-----~~~D~iv~~~~~~~-~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..| .++.+|+.... +.. .++|+|++...... ..........++.+.++|||||.+|
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Li 196 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLI 196 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 112 36777876543 221 35999998543222 2244566677888889999999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00038 Score=54.14 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+..+.+|+|+|-|.+.+.+++.|...-+|+|.+ -.+.+++-..-+.|+..+..|...|+...++.+-.+-+|+.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg---- 146 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG---- 146 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee----
Confidence 4456899999999999999999998899999988 57788887777889988899999999887765434433332
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.|..++.+-+.+..-+..+..++
T Consensus 147 ----aes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 147 ----AESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred ----hHHHHhhhHHHHHhhCcCCCeEE
Confidence 44566666666666677777776
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0012 Score=59.11 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=71.6
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH----c-CCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeee
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEE 83 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~----~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~ 83 (306)
+...|. ..+.++.+++|+|||+|.=+..+.+ . ...+++++|+| ++++.+.+.+....++. .+.-+.+|.++
T Consensus 66 ~~~~Ia--~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 66 HSSDIA--ASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHH--HhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 334444 2356778999999999966444333 2 13479999999 89999988887444432 23447777755
Q ss_pred ec--CC----CceeeEEEEcccccccCC--cchHHHHHHHHhh-cccCCeEEE
Q 021852 84 IE--LP----VTKVDIIISEWMGYFLLF--ENMLNTVLYARDK-WLVDDGIVL 127 (306)
Q Consensus 84 ~~--~~----~~~~D~iv~~~~~~~~~~--~~~~~~~l~~~~~-~L~p~G~~i 127 (306)
.. ++ .....+++. +|+.+.+ ......+++.+.+ .|+||+.++
T Consensus 144 ~l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred HHhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence 31 11 123456665 3333322 2344577888888 999999886
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=54.10 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=75.7
Q ss_pred HHHHHHHHh---cccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 9 KSYQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 9 ~~~~~ai~~---~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
.....+|.. +..+.+|++||=+|+.+|--.-..+. .|...+||+|.| .+....-..+++. +|+--+..|+..
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence 445566653 35678899999999999988878877 676789999987 4333322333222 346666677754
Q ss_pred ec---CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IE---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~---~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. .--+.+|+|+.+.. -.....-+...+..+|++||.++
T Consensus 136 P~~Y~~~Ve~VDviy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~ 177 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA-----QPNQAEILADNAEFFLKKGGYVV 177 (231)
T ss_pred cHHhhhhcccccEEEEecC-----CchHHHHHHHHHHHhcccCCeEE
Confidence 32 11367999998742 33455666777889999999765
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00041 Score=61.73 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
-...+|+|.|.|.++..+.. -..+|-+++.+ +.+..++..+. .| |+.+.+|+..- .| +.|+|+.-|+.+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P--~~daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP--KGDAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC--CcCeEEEEeeccc
Confidence 37999999999999888887 45689999988 66555555543 33 67777887654 33 4679999998777
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. .+.-.+++.+..-|+|+|.++
T Consensus 249 wtD-edcvkiLknC~~sL~~~GkIi 272 (342)
T KOG3178|consen 249 WTD-EDCVKILKNCKKSLPPGGKII 272 (342)
T ss_pred CCh-HHHHHHHHHHHHhCCCCCEEE
Confidence 744 456679999999999999987
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=4.4e-05 Score=65.81 Aligned_cols=96 Identities=18% Similarity=0.076 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
..+..++|+|||.|-.... .+...++++|.+ ..+..+++. +...+..+|+..++.+..+||..++-.+.
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhh
Confidence 3488999999999865321 134479999988 777777653 22257778999988888999999998888
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++....--..++++..|.|+|||..+
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 888877777889999999999999865
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00056 Score=62.74 Aligned_cols=98 Identities=24% Similarity=0.260 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeeeecC-CCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEEIEL-PVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~-~~~~~D~iv~~ 97 (306)
++.+|||.=+|+|.=++..++ .+..+|++-|+| +.++.++++++.|++++ ++++.+.|+..+.. ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 456999999999999988887 467799999999 89999999999999987 79999999887641 35899999998
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++|+ ...+++.+.+.++.||.+.
T Consensus 129 PfGS-------p~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 129 PFGS-------PAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp -SS---------HHHHHHHHHHEEEEEEEE
T ss_pred CCCC-------ccHhHHHHHHHhhcCCEEE
Confidence 8643 3457788888899999986
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0013 Score=59.70 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=82.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D 92 (306)
....+|.+|||+.+-.|.=+...|. .+-..|+|.|.+ +-+...+.++.+.|+. +..+.+.|..+++ ++ ++||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~-~~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFP-GSFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccC-cccc
Confidence 4557899999999999877666555 345589999998 8899999999999985 4667777776554 45 3899
Q ss_pred EEEEcccccc--cCCc-----------------chHHHHHHHHhhcccCCeEEEecCceE
Q 021852 93 IIISEWMGYF--LLFE-----------------NMLNTVLYARDKWLVDDGIVLPDKASL 133 (306)
Q Consensus 93 ~iv~~~~~~~--~~~~-----------------~~~~~~l~~~~~~L~p~G~~ip~~~~~ 133 (306)
-|+.+...++ +... +.-..++..+..++++||+++-+.+++
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 9998765554 2111 122356666678999999999555543
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=6.5e-05 Score=61.65 Aligned_cols=105 Identities=26% Similarity=0.270 Sum_probs=67.9
Q ss_pred HHHHHHHHhcccC--CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNKFL--FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~--~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
+.|++.+...... ..+.++||+|+|.|-++...+.. ..+|||.|.| .|....++. +. +.+..+ ++.
T Consensus 96 ~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y-nVl~~~-----ew~ 164 (288)
T KOG3987|consen 96 EQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY-NVLTEI-----EWL 164 (288)
T ss_pred HHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC-ceeeeh-----hhh
Confidence 4566666533221 23579999999999999888875 5589999999 787766543 33 222222 111
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccC-CeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD-DGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p-~G~~i 127 (306)
-.+-++|+|.|--+ +...-+.-.+++.+...|+| +|++|
T Consensus 165 ~t~~k~dli~clNl---LDRc~~p~kLL~Di~~vl~psngrvi 204 (288)
T KOG3987|consen 165 QTDVKLDLILCLNL---LDRCFDPFKLLEDIHLVLAPSNGRVI 204 (288)
T ss_pred hcCceeehHHHHHH---HHhhcChHHHHHHHHHHhccCCCcEE
Confidence 12357999998321 22223445678888888988 88877
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0043 Score=54.39 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhcccCCC-------CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEE-
Q 021852 5 VVRTKSYQNVIYQNKFLFK-------DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVIT- 75 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~~~~~-------~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~- 75 (306)
..|...|...|.....+.+ ..+||--|||.|.|+.-+|..|. .+-|=|.| -|+-...=.+..-..++.++
T Consensus 125 ~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~I 203 (369)
T KOG2798|consen 125 RERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTI 203 (369)
T ss_pred hhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEE
Confidence 3566777777765444333 46899999999999999999887 67777888 66544332222112222222
Q ss_pred --EEEc------------------------------------eeeeecCC---CceeeEEEEcccccccCCcchHHHHHH
Q 021852 76 --VLKG------------------------------------KIEEIELP---VTKVDIIISEWMGYFLLFENMLNTVLY 114 (306)
Q Consensus 76 --~~~~------------------------------------d~~~~~~~---~~~~D~iv~~~~~~~~~~~~~~~~~l~ 114 (306)
+++. |..+.--. .+.+|+|+.. +|....+..-..++
T Consensus 204 YPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc---fFIDTa~NileYi~ 280 (369)
T KOG2798|consen 204 YPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC---FFIDTAHNILEYID 280 (369)
T ss_pred EeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE---EEeechHHHHHHHH
Confidence 2222 11111100 2369999986 44555566777899
Q ss_pred HHhhcccCCeEEE
Q 021852 115 ARDKWLVDDGIVL 127 (306)
Q Consensus 115 ~~~~~L~p~G~~i 127 (306)
.+.+.|+|||+.|
T Consensus 281 tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 281 TIYKILKPGGVWI 293 (369)
T ss_pred HHHHhccCCcEEE
Confidence 9999999999987
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0081 Score=51.09 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=61.7
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC--CceeeE
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDI 93 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~ 93 (306)
......|++||-+|-+- +.|+.+|. ...++|+.+|++ .+++..++.+++.|++ |+.++.|+.+--.+ .++||+
T Consensus 39 ~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 39 ERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp HTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSE
T ss_pred hcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCE
Confidence 34556799999999766 55666655 346799999999 8999999999999994 99999998764211 379999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGI 125 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~ 125 (306)
++++++ +.. .-+..++......||..|.
T Consensus 116 f~TDPP-yT~---~G~~LFlsRgi~~Lk~~g~ 143 (243)
T PF01861_consen 116 FFTDPP-YTP---EGLKLFLSRGIEALKGEGC 143 (243)
T ss_dssp EEE----SSH---HHHHHHHHHHHHTB-STT-
T ss_pred EEeCCC-CCH---HHHHHHHHHHHHHhCCCCc
Confidence 999985 322 4566777777778887663
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0029 Score=54.05 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
.|.+.+.. ...+..+|+|||||.=.+++..... ....++|+|++ .+++...+.+...+.. .++...|...-. +
T Consensus 94 ~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-~ 168 (251)
T PF07091_consen 94 EFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-P 168 (251)
T ss_dssp HHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-T
T ss_pred HHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-C
Confidence 34444442 3455789999999999998876653 33499999999 8999999998888874 566666765544 4
Q ss_pred CceeeEEEE
Q 021852 88 VTKVDIIIS 96 (306)
Q Consensus 88 ~~~~D~iv~ 96 (306)
....|+.+.
T Consensus 169 ~~~~DlaLl 177 (251)
T PF07091_consen 169 KEPADLALL 177 (251)
T ss_dssp TSEESEEEE
T ss_pred CCCcchhhH
Confidence 578999886
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0037 Score=54.15 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCC--cHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C---------
Q 021852 23 KDKVVLDVGAGT--GILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L--------- 86 (306)
Q Consensus 23 ~~~~VLDlG~G~--G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~--------- 86 (306)
.-...||||||- -...-..|+ .+.++|.-+|++ -.+..++..+..+.- .+..++.+|+.+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 336899999993 223444444 566799999999 567778887766542 35899999987653 1
Q ss_pred -CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 -PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 -~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-+.++=+++...+ +++..+.....++..+...|.||..++
T Consensus 147 D~~rPVavll~~vL-h~v~D~~dp~~iv~~l~d~lapGS~L~ 187 (267)
T PF04672_consen 147 DFDRPVAVLLVAVL-HFVPDDDDPAGIVARLRDALAPGSYLA 187 (267)
T ss_dssp -TTS--EEEECT-G-GGS-CGCTHHHHHHHHHCCS-TT-EEE
T ss_pred CCCCCeeeeeeeee-ccCCCccCHHHHHHHHHHhCCCCceEE
Confidence 1356667776654 666676788899999999999999987
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00025 Score=61.46 Aligned_cols=97 Identities=26% Similarity=0.334 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCcHHHH-HHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSL-FCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~-~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+.+|.|+-+|-|.+++ .+..+||+.|+|+|.+ ..++..+++++.|+..++..++++|-+... +...+|-|...++.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-~~~~AdrVnLGLlP 272 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-PRLRADRVNLGLLP 272 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-ccccchheeecccc
Confidence 35789999999999999 8889999999999998 899999999999998888889999888765 44789988876543
Q ss_pred cccCCcchHHHHHHHHhhcccCCeE-EE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGI-VL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~-~i 127 (306)
..+..++... +.|+|.|- ++
T Consensus 273 ---Sse~~W~~A~----k~Lk~eggsil 293 (351)
T KOG1227|consen 273 ---SSEQGWPTAI----KALKPEGGSIL 293 (351)
T ss_pred ---ccccchHHHH----HHhhhcCCcEE
Confidence 3455566544 45666544 44
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0045 Score=54.94 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=63.7
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCce
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTK 90 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~ 90 (306)
.....++..++|.=+|.|.-+..+++. +..+|+|+|.+ .++..+++.++.. .+++++++++..++. .+..+
T Consensus 15 ~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 15 GLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTK 92 (305)
T ss_pred hcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCc
Confidence 344567889999999999999988874 44799999999 8999998887654 468999999988764 23357
Q ss_pred eeEEEEcc
Q 021852 91 VDIIISEW 98 (306)
Q Consensus 91 ~D~iv~~~ 98 (306)
+|.|+.+.
T Consensus 93 vDgIl~DL 100 (305)
T TIGR00006 93 IDGILVDL 100 (305)
T ss_pred ccEEEEec
Confidence 99999874
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.001 Score=58.92 Aligned_cols=80 Identities=24% Similarity=0.248 Sum_probs=63.7
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHH-------HHHHHHHHcCCCC-eEEEEEceeeeecC-CC
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMAN-------MAKQIVEANGFSN-VITVLKGKIEEIEL-PV 88 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~-------~a~~~~~~~~~~~-~v~~~~~d~~~~~~-~~ 88 (306)
..+.+|+.|+|---|||.+...+|..|+ .|+|.|++ .++. ..+.+++..|.++ -+.++.+|...-++ ..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4578999999999999999999999988 99999999 7765 3466777777543 36777888776543 24
Q ss_pred ceeeEEEEccc
Q 021852 89 TKVDIIISEWM 99 (306)
Q Consensus 89 ~~~D~iv~~~~ 99 (306)
..||.|||++.
T Consensus 283 ~~fDaIvcDPP 293 (421)
T KOG2671|consen 283 LKFDAIVCDPP 293 (421)
T ss_pred ceeeEEEeCCC
Confidence 68999999974
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0023 Score=54.38 Aligned_cols=86 Identities=23% Similarity=0.192 Sum_probs=49.9
Q ss_pred HHhcccCCCCC--EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHH---HHHHHcCCC-----CeEEEEEceeee
Q 021852 15 IYQNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAK---QIVEANGFS-----NVITVLKGKIEE 83 (306)
Q Consensus 15 i~~~~~~~~~~--~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~---~~~~~~~~~-----~~v~~~~~d~~~ 83 (306)
+.++..+.++. +|||.=+|-|.=++.+|..|+ +|+++|.| -+....+ +++...... .+++++++|..+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 33344455553 999999999999999998887 89999988 3333332 333332221 489999999987
Q ss_pred ec-CCCceeeEEEEccccc
Q 021852 84 IE-LPVTKVDIIISEWMGY 101 (306)
Q Consensus 84 ~~-~~~~~~D~iv~~~~~~ 101 (306)
+. .+..++|+|..++|..
T Consensus 144 ~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp HCCCHSS--SEEEE--S--
T ss_pred HHhhcCCCCCEEEECCCCC
Confidence 53 3458999999999843
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0039 Score=51.96 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH----c-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEE
Q 021852 3 KDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECS-QMANMAKQIVEANGFSNVITV 76 (306)
Q Consensus 3 ~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~----~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~ 76 (306)
+...-+-+|++.|-+ .++++|+++|.-.|.-+++.|. . +.++|+++|++ .-... +..+...+.++|++
T Consensus 16 q~P~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~ 89 (206)
T PF04989_consen 16 QYPQDMVAYQELIWE----LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITF 89 (206)
T ss_dssp S-HHHHHHHHHHHHH----H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEE
T ss_pred cCHHHHHHHHHHHHH----hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEE
Confidence 344456677777764 3568999999999877776654 2 45699999986 32211 22233455578999
Q ss_pred EEceeeeec-------C-CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 77 LKGKIEEIE-------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 77 ~~~d~~~~~-------~-~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++|..+.. + ......+|+-+.- -.+++. -..+.....++++|+.+|
T Consensus 90 i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~---H~~~hv-l~eL~~y~plv~~G~Y~I 144 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELASPPHPVLVILDSS---HTHEHV-LAELEAYAPLVSPGSYLI 144 (206)
T ss_dssp EES-SSSTHHHHTSGSS----SSEEEEESS-------SSH-HHHHHHHHHT--TT-EEE
T ss_pred EECCCCCHHHHHHHHHhhccCCceEEEECCC---ccHHHH-HHHHHHhCccCCCCCEEE
Confidence 999987653 1 1234446665431 112333 445566889999999987
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00067 Score=58.75 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=64.0
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHH-------HHHHHH--HcCCCCeEEEEEceeeeecC-C
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANM-------AKQIVE--ANGFSNVITVLKGKIEEIEL-P 87 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~-------a~~~~~--~~~~~~~v~~~~~d~~~~~~-~ 87 (306)
.-...+++|||+|||+|+.++.+...|+..+...|.+ +.++. +...+. .+....-..+++....++.+ .
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 3456899999999999999999999888899999987 55411 011110 11111123344441112221 1
Q ss_pred Cc--eeeEEEEcccccccCCcchHHHH-HHHHhhcccCCeEEE
Q 021852 88 VT--KVDIIISEWMGYFLLFENMLNTV-LYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~--~~D~iv~~~~~~~~~~~~~~~~~-l~~~~~~L~p~G~~i 127 (306)
.+ .||+|.+.-..|.. ...+.+ ...+..+++++|+++
T Consensus 192 t~~~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~ 231 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFY 231 (282)
T ss_pred ccccchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhh
Confidence 13 78998885443432 344444 556668889999886
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0028 Score=52.10 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcC-------CCCeEEEEEceeeeec---CCCce
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANG-------FSNVITVLKGKIEEIE---LPVTK 90 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~-------~~~~v~~~~~d~~~~~---~~~~~ 90 (306)
+.-.+.|||||-|.+.+.++. .+..-+.|.|+. ...++.++++++.. + .++.+.+.+..... +..++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~-~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQY-PNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccc-ccceeeeccchhhccchhhhcc
Confidence 345799999999999999988 456679999998 88888888877654 3 35777776665442 11111
Q ss_pred eeEE-EEcccccccC----CcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDII-ISEWMGYFLL----FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~i-v~~~~~~~~~----~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+-. ++-+=.++-. ..-.-..++.+..-+|++||.++
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 1111 1111001100 00012356666777899999986
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0073 Score=56.19 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=76.2
Q ss_pred CCCCC-EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHH-HHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDK-VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQI-VEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~-~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
..+-. ++|-+|||.-.++..+-+.|...|+.+|+| -.++.+... ++.+ .-..+...|+..+.+++++||+|+-.
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLVFEDESFDIVIDK 121 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhccCCCcceeEEEec
Confidence 34444 999999999999999999999999999999 444444332 2222 34789999999999999999999985
Q ss_pred ccccc-cCCcc------hHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYF-LLFEN------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~-~~~~~------~~~~~l~~~~~~L~p~G~~i 127 (306)
.-.+. +.++. .....+..+.++|++||+.+
T Consensus 122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred CccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 43332 22222 23355677889999999965
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0016 Score=53.08 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=68.7
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCC-EEEEEechHHHHH-------HHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAA-HVYAVECSQMANM-------AKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~-~v~~iD~s~~~~~-------a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.+|.+|+|+=.|.|.++..++. .|++ .||+.-..+.... .+...++... .+++.+......+. +.+
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQ 121 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCC
Confidence 4578899999999999999999988 3433 7887654432111 1111122222 24666666666555 447
Q ss_pred eeeEEEEcccccccC----CcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLL----FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~----~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..|++......+-++ +......+..++.+.|||||+++
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~ 163 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYL 163 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEE
Confidence 788877754433332 23455667778889999999986
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0046 Score=51.64 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=60.9
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---CceeeEEEEccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEWMGY 101 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~iv~~~~~~ 101 (306)
.++|||||=+..... +..+.-.|++||.++ ..-.+.+.|+.+.++| .++||+|++.++..
T Consensus 53 lrlLEVGals~~N~~--s~~~~fdvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC--STSGWFDVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcc--cccCceeeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 599999986543322 233444799999752 0124677787777654 57999999998877
Q ss_pred ccCCcchHHHHHHHHhhcccCCeE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGI 125 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~ 125 (306)
+......--.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 776556666788888999999998
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0087 Score=51.40 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHH-----HHHcCCCCeEEEEEceeeeec---CCCce-eeE
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI-----VEANGFSNVITVLKGKIEEIE---LPVTK-VDI 93 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~-----~~~~~~~~~v~~~~~d~~~~~---~~~~~-~D~ 93 (306)
+...||++|+|+|..++.+|..+...|.-.|........+.+ .+.+++...+.+...++.... +-... +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 356799999999999999998666688888866333333333 233344335555555554432 11133 899
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++.-+.| .++..+.+...+..+|..++.++
T Consensus 166 ilasDvvy---~~~~~e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 166 ILASDVVY---EEESFEGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred EEEeeeee---cCCcchhHHHHHHHHHhcCCeEE
Confidence 99864323 44566667777778888888443
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0031 Score=58.88 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=64.7
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCC--EEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAA--HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~--~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
..|+|..+|.|.++.++.+.+.= .|+-+.-.+.+.. +-..|+ |-+.+...+.++.-+..||+|.++.+.+.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhccc---chhccchhhccCCCCcchhheehhhhhhh
Confidence 58999999999999888776421 2222221122322 223354 44566555556533489999999866554
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....-.+..++-++.|.|+|+|.+|
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~i 464 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVI 464 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEE
Confidence 4455567888999999999999998
|
; GO: 0008168 methyltransferase activity |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.034 Score=50.79 Aligned_cols=95 Identities=28% Similarity=0.329 Sum_probs=61.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce-e-ee-ecCC-Cceee
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK-I-EE-IELP-VTKVD 92 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~-~~-~~~~-~~~~D 92 (306)
...++.+|+-+|||+ |+++..+++ .|+++|+++|.+ +-++.|++... . +.+.....+ . .. .... ...+|
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---~-~~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---A-DVVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---C-eEeecCccccHHHHHHHHhCCCCCC
Confidence 344555999999998 999888888 789999999998 78888876431 1 111111111 0 00 0122 24799
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++=- .+ .+..+....++++|+|.++
T Consensus 241 ~vie~-~G--------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 241 VVIEA-VG--------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred EEEEC-CC--------CHHHHHHHHHHhcCCCEEE
Confidence 98842 11 2335556668999999987
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.012 Score=52.86 Aligned_cols=96 Identities=22% Similarity=0.185 Sum_probs=76.3
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC-CceeeEEEEcccc
Q 021852 24 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMG 100 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~~ 100 (306)
..+|+|-=+|||+=++..|. .+..+|+.-|+| +.++.++++++.|... ...+++.|+..+... ...||+|=.+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhcCCCccEEecCCCC
Confidence 78999999999999998887 566699999999 8999999999999443 467777787665422 3789999988864
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ ...+++++.+.++.+|.+.
T Consensus 132 S-------PaPFlDaA~~s~~~~G~l~ 151 (380)
T COG1867 132 S-------PAPFLDAALRSVRRGGLLC 151 (380)
T ss_pred C-------CchHHHHHHHHhhcCCEEE
Confidence 3 2346777778888899886
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0076 Score=53.10 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=51.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC--CceeeEEEEccc
Q 021852 26 VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWM 99 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~iv~~~~ 99 (306)
+|+|+.||.|.++..+.++|...|.++|.+ ..++..+.+.. + .++.+|+.++... ...+|+++..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEeCCC
Confidence 699999999999999999999889999998 66666655532 1 2566777776522 257999998764
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.022 Score=51.67 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=55.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
...++.+||-.|+|. |.++..+|+ .|+++|+++|.+ +-++.+++ .|...-+..-..+..++....+.+|+|+-
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEE
Confidence 345789999999875 666666676 677789999987 66666654 34321111111112221111235898885
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .+ . +..+....++|+++|+++
T Consensus 242 ~-~G----~----~~~~~~~~~~l~~~G~iv 263 (343)
T PRK09880 242 V-SG----H----PSSINTCLEVTRAKGVMV 263 (343)
T ss_pred C-CC----C----HHHHHHHHHHhhcCCEEE
Confidence 3 11 1 123444557899999987
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0062 Score=51.05 Aligned_cols=91 Identities=22% Similarity=0.248 Sum_probs=62.2
Q ss_pred CEEEEEcCCCcHHHHHHHHc--------CC--CEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--------C
Q 021852 25 KVVLDVGAGTGILSLFCAKA--------GA--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------L 86 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~--------g~--~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~ 86 (306)
.+|+|+.+..|.++..+++. +. ++++++|+.+|+-+ ..|.-+++|++... +
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI-----------~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI-----------EGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc-----------CceEEeecccCCHhHHHHHHHHh
Confidence 68999999999999999872 11 13999998765432 23667788887654 5
Q ss_pred CCceeeEEEEcccccccCCcchHH---------HHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLN---------TVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~---------~~l~~~~~~L~p~G~~i 127 (306)
.+++.|+|||+...... +.++++ +.+.-..+.|+|||.++
T Consensus 112 ggekAdlVvcDGAPDvT-GlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVT-GLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCccEEEeCCCCCcc-ccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 56899999997433221 122222 33344458999999997
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.033 Score=50.11 Aligned_cols=90 Identities=29% Similarity=0.323 Sum_probs=60.1
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce-eeeec-CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK-IEEIE-LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~-~~~~~~D~ 93 (306)
....+|++|+-+|+|- |.++..+|+ .| .+|+++|.+ +-.+.|++. |. -.++... ..... .. +.+|+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~~-~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAVK-EIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHhH-hhCcE
Confidence 5678899999999982 456777777 67 599999998 777777664 32 2344432 21111 12 34999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+.-. . +..+....+.|+++|.++
T Consensus 233 ii~tv--------~--~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 233 IIDTV--------G--PATLEPSLKALRRGGTLV 256 (339)
T ss_pred EEECC--------C--hhhHHHHHHHHhcCCEEE
Confidence 99632 1 334445568999999987
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.019 Score=50.12 Aligned_cols=106 Identities=21% Similarity=0.160 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHH--cCCC-CeEEEEEceeeeec--CCCceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEA--NGFS-NVITVLKGKIEEIE--LPVTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~--~~~~-~~v~~~~~d~~~~~--~~~~~~D~i 94 (306)
...++||-||.|-|......+++. ...+.-+|++ ..++..++.... .+.. .+|.++-+|...+- .+.++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 456899999999999988877753 4478899998 777777776643 3343 47888888865542 345899999
Q ss_pred EEcccccccCCcch-HHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENM-LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~-~~~~l~~~~~~L~p~G~~i 127 (306)
+.+.-.-....+.. .+.....+.+.||+||+++
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~ 233 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVC 233 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 99742222222222 2345556778999999997
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0035 Score=58.19 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----CCceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~D~i 94 (306)
.++-+|||.=|++|+-++..|+ -|...|+|-|.+ ..++..+++++.|+..+.++..+.|+..+.. ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4567999999999999999888 357789999999 8899999999999998888899988866542 24789999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
=.++.|. ...+++.+.+.++.||.+..
T Consensus 188 DLDPyGs-------~s~FLDsAvqav~~gGLL~v 214 (525)
T KOG1253|consen 188 DLDPYGS-------PSPFLDSAVQAVRDGGLLCV 214 (525)
T ss_pred ecCCCCC-------ccHHHHHHHHHhhcCCEEEE
Confidence 9887543 34577777888899999873
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.021 Score=51.00 Aligned_cols=110 Identities=16% Similarity=0.070 Sum_probs=64.4
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeee--ecCC-Ccee
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEE--IELP-VTKV 91 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~-~~~~ 91 (306)
.....+..+++||+|.|.|.-..++-. .+ .+.++.+|.|..+...-..+.+|-.........++++. ++++ ...|
T Consensus 107 ~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~y 186 (484)
T COG5459 107 KRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLY 186 (484)
T ss_pred HhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcccee
Confidence 344556678899999999866554444 22 44678888886665555555555433333333333332 1222 3567
Q ss_pred eEEEEc-ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISE-WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~-~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++.. -+.. ...+..+...++.+..++.|||.++
T Consensus 187 tl~i~~~eLl~-d~~ek~i~~~ie~lw~l~~~gg~lV 222 (484)
T COG5459 187 TLAIVLDELLP-DGNEKPIQVNIERLWNLLAPGGHLV 222 (484)
T ss_pred ehhhhhhhhcc-ccCcchHHHHHHHHHHhccCCCeEE
Confidence 766651 1111 2244455567888889999999876
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.079 Score=50.62 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cC----CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-C----CCc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK-AG----AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-L----PVT 89 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~-~g----~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~----~~~ 89 (306)
..+..+|+|-.||+|.+...+++ .+ ...++|.|.+ .....|+.++--+|....+.+.+++...-+ . ...
T Consensus 184 ~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~ 263 (489)
T COG0286 184 PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKG 263 (489)
T ss_pred CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcc
Confidence 34667999999999988777766 22 2469999988 899999999888888534556665543322 1 236
Q ss_pred eeeEEEEccccc
Q 021852 90 KVDIIISEWMGY 101 (306)
Q Consensus 90 ~~D~iv~~~~~~ 101 (306)
+||.|++++...
T Consensus 264 ~~D~viaNPPf~ 275 (489)
T COG0286 264 KFDFVIANPPFS 275 (489)
T ss_pred ceeEEEeCCCCC
Confidence 799999997643
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.016 Score=51.20 Aligned_cols=95 Identities=26% Similarity=0.276 Sum_probs=63.9
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee--eeec------CC
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI--EEIE------LP 87 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~------~~ 87 (306)
..+.+|.+||-+|+|+ |++++..|+ .|+++|+.+|.+ +-++.|++ + |.. .+....... .++. +.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~-~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT-VTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe-EEeeccccccHHHHHHHHHhhcc
Confidence 4578899999999998 999999999 799999999998 88888877 3 432 122211111 1110 22
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+|+.+.- .-.+..+++....++++|.++
T Consensus 240 ~~~~d~~~dC---------sG~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 240 KKQPDVTFDC---------SGAEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred ccCCCeEEEc---------cCchHHHHHHHHHhccCCEEE
Confidence 3457887742 122344555567889999976
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.14 Score=42.71 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=64.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cC--CCEEEEEech-HHHHHHHHHHHHc----------------
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECS-QMANMAKQIVEAN---------------- 68 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g--~~~v~~iD~s-~~~~~a~~~~~~~---------------- 68 (306)
+.|+.++... .-..+-++.|-.||+|.+.-.+.- ++ .+.|+|.|++ ++++.|++|+.-.
T Consensus 38 Ei~qR~l~~l-~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~ 116 (246)
T PF11599_consen 38 EIFQRALHYL-EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY 116 (246)
T ss_dssp HHHHHHHCTS-SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH
Confidence 5566665432 123456999999999977554443 22 4589999999 8999998875321
Q ss_pred -------------------------CCCCeEEEEEceeeeec-----CCCceeeEEEEccc-ccccCCc-----chHHHH
Q 021852 69 -------------------------GFSNVITVLKGKIEEIE-----LPVTKVDIIISEWM-GYFLLFE-----NMLNTV 112 (306)
Q Consensus 69 -------------------------~~~~~v~~~~~d~~~~~-----~~~~~~D~iv~~~~-~~~~~~~-----~~~~~~ 112 (306)
|-.....+...|+++.. ......|+|+.+.. |.-..++ ...+.+
T Consensus 117 e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~m 196 (246)
T PF11599_consen 117 EQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQM 196 (246)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHH
Confidence 11223667777776632 11244799999742 2212222 356788
Q ss_pred HHHHhhcccCCeEEE
Q 021852 113 LYARDKWLVDDGIVL 127 (306)
Q Consensus 113 l~~~~~~L~p~G~~i 127 (306)
+..+...|-+++++.
T Consensus 197 l~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 197 LNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHCCS-TT-EEE
T ss_pred HHHHHhhCCCCcEEE
Confidence 999999995444443
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.068 Score=51.06 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce--------eeeec----
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK--------IEEIE---- 85 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d--------~~~~~---- 85 (306)
..++.+|+-+|+|. |..++.+|+ .|+ .|+++|.+ +-++.+++ .|.. .+.+-..+ +.+..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHH
Confidence 45789999999998 888888888 687 89999988 66666654 2431 11111100 00000
Q ss_pred ------CC--CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 ------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ------~~--~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+. ...+|+|+.-.. .........+.+...+.+||||+++
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag---~pg~~aP~lit~~~v~~mkpGgvIV 282 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTAL---IPGKPAPKLITAEMVASMKPGSVIV 282 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCC---CCcccCcchHHHHHHHhcCCCCEEE
Confidence 01 136999997431 1111122223477778999999987
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.055 Score=45.89 Aligned_cols=106 Identities=25% Similarity=0.346 Sum_probs=64.6
Q ss_pred HHHHHHH---hcccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-H----HHHHHHHHHHHcCCCCeEEEEEc
Q 021852 10 SYQNVIY---QNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-Q----MANMAKQIVEANGFSNVITVLKG 79 (306)
Q Consensus 10 ~~~~ai~---~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~----~~~~a~~~~~~~~~~~~v~~~~~ 79 (306)
....+|. .+.++.+|.+||=||+++|...-..+. .| -.-|||+|.| . ++..|+++ ++.|.++ -
T Consensus 140 KLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------tNiiPIi-E 212 (317)
T KOG1596|consen 140 KLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------TNIIPII-E 212 (317)
T ss_pred HHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------CCceeee-c
Confidence 3444453 457889999999999999987666666 33 4479999976 2 34444332 1334444 3
Q ss_pred eeeeec---CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 80 KIEEIE---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 80 d~~~~~---~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++... +.-.-+|+|+++.. .......+.-....+||+||-++
T Consensus 213 DArhP~KYRmlVgmVDvIFaDva-----qpdq~RivaLNA~~FLk~gGhfv 258 (317)
T KOG1596|consen 213 DARHPAKYRMLVGMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFV 258 (317)
T ss_pred cCCCchheeeeeeeEEEEeccCC-----CchhhhhhhhhhhhhhccCCeEE
Confidence 554321 11246899998742 11222223334568999999876
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.13 Score=47.50 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=62.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce-ee-ee-c-CCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK-IE-EI-E-LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~~-~~-~-~~~~~~ 91 (306)
..+.++.+||.+|+|. |.++..+|+ .|..+|++++.+ +..+.+++.. +. ..+.....+ .. .+ . .+...+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4567889999999987 777777777 566679999987 7777776542 21 112211111 10 11 1 123469
Q ss_pred eEEEEcccccc------------cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYF------------LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~------------~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+-..-+.. +.........+....+.++++|.++
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv 303 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVS 303 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEE
Confidence 99886321100 0011112445666778999999987
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.3 Score=42.67 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCC--CCeEEEEEceeee
Q 021852 6 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 83 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~--~~~v~~~~~d~~~ 83 (306)
.|++.+.+.+.+.... ....|+.+|||-=.-...+......+++=+|..++++.-++.+.+.+. ..+.+++..|+.+
T Consensus 65 ~Rtr~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 4777777777765432 245799999997655555533212356666666777777777776543 3568888888862
Q ss_pred -ec-------CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 84 -IE-------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 84 -~~-------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+. +.....-++++|.+..++ .+.....++..+.+...||+.++.+
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11 122455688888776655 5667888999988888899888733
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.033 Score=46.95 Aligned_cols=76 Identities=25% Similarity=0.323 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCc-HHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHc-CCCCeEEEEEceeeeecCC-----CceeeE
Q 021852 23 KDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEAN-GFSNVITVLKGKIEEIELP-----VTKVDI 93 (306)
Q Consensus 23 ~~~~VLDlG~G~G-~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~-----~~~~D~ 93 (306)
++.+.||||.|.- +..+.-.+ .|. +.+|.|++ ..+..|+.++..| ++...|++....=.+..++ .+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 5678999999963 33333333 444 78999998 7889999999998 7877677765433222222 589999
Q ss_pred EEEccc
Q 021852 94 IISEWM 99 (306)
Q Consensus 94 iv~~~~ 99 (306)
.+|++.
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999986
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.11 Score=46.78 Aligned_cols=120 Identities=18% Similarity=0.025 Sum_probs=72.4
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC---C--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-------
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG---A--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------- 85 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g---~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 85 (306)
..+.++.+|||+.+-.|.=+..+.++. . ..|++=|.+ .-+......+.+..- .++.+.+.++...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 567899999999999998887766632 2 278998977 545555444433322 34555555544332
Q ss_pred --CCCceeeEEEEcccccccC-Cc---c---------------h-HHHHHHHHhhcccCCeEEEecCceEEEEEeecc
Q 021852 86 --LPVTKVDIIISEWMGYFLL-FE---N---------------M-LNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 141 (306)
Q Consensus 86 --~~~~~~D~iv~~~~~~~~~-~~---~---------------~-~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~ 141 (306)
.....||-|+++...+.-. .+ . . --.++..-.++||+||.++-+.+++ .|++.+
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL--npieNE 305 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL--NPIENE 305 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC--CchhhH
Confidence 1235799999975433110 00 0 0 0145556668999999999555533 344443
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.063 Score=48.15 Aligned_cols=65 Identities=35% Similarity=0.424 Sum_probs=49.8
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEccc
Q 021852 26 VVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 99 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~~~ 99 (306)
+++|+-||.|.+++-+.++|...|.|+|++ ..++..+.+.. ....+|+.++. ++. .+|+++..+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccC
Confidence 699999999999999999998899999999 66666666542 67788888776 443 5999998654
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.17 Score=44.51 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=66.8
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---- 85 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 85 (306)
+.+.......++...+|.=-|.|..+..+.+.. .++++|+|.+ .+++.|++.+...+ +++++++++..++.
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHH
Confidence 334445667888999999999999998888743 4589999999 89999999988766 68999999987764
Q ss_pred -CCCceeeEEEEcc
Q 021852 86 -LPVTKVDIIISEW 98 (306)
Q Consensus 86 -~~~~~~D~iv~~~ 98 (306)
...+++|-|+.++
T Consensus 91 ~~~i~~vDGiL~DL 104 (314)
T COG0275 91 ELGIGKVDGILLDL 104 (314)
T ss_pred hcCCCceeEEEEec
Confidence 2246889998864
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.095 Score=46.38 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=40.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA 67 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~ 67 (306)
-.+|..|||--+|+|.-++++.+.| ++.+|+|++ +.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence 4689999999999999999888885 499999999 899999888753
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.085 Score=44.48 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=34.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHH
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~ 63 (306)
.-.+|..|||--||+|..+.++.+.|- +.+|+|++ +.++.|++
T Consensus 188 ~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 188 STNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 356799999999999999999988854 89999999 78888764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.15 Score=43.64 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=40.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN 68 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~ 68 (306)
-.+|..|||--||+|..+.++.+.|. +.+|+|++ +..+.|.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 45889999999999999998888755 89999999 8888888877653
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.082 Score=47.06 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=55.4
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-CCce
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTK 90 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~ 90 (306)
....++..++|.=-|.|.-+..+.+ .+..+|+|+|.+ .+++.|++++... .+++.+++++..++. . ...+
T Consensus 16 L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 16 LNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp HT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred hCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCc
Confidence 4467788999999999999998887 455799999999 8888988776543 478999999987764 3 3468
Q ss_pred eeEEEEcc
Q 021852 91 VDIIISEW 98 (306)
Q Consensus 91 ~D~iv~~~ 98 (306)
+|.|+.+.
T Consensus 94 ~dgiL~DL 101 (310)
T PF01795_consen 94 VDGILFDL 101 (310)
T ss_dssp EEEEEEE-
T ss_pred cCEEEEcc
Confidence 99999864
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.61 Score=42.27 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=56.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc----------CC-------CEEEEEec-h-HHHHHHHHHHHH----cCCCC-eEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA----------GA-------AHVYAVEC-S-QMANMAKQIVEA----NGFSN-VITV 76 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~----------g~-------~~v~~iD~-s-~~~~~a~~~~~~----~~~~~-~v~~ 76 (306)
..+.-+|+|+||.+|.-++.+... .. -.|+--|. + +.-...+..-.. ....+ -+..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344569999999999887766431 01 16888883 3 433222221111 00111 1334
Q ss_pred EEceeeeecCCCceeeEEEEcccccccCC------------------------------------cchHHHHHHHHhhcc
Q 021852 77 LKGKIEEIELPVTKVDIIISEWMGYFLLF------------------------------------ENMLNTVLYARDKWL 120 (306)
Q Consensus 77 ~~~d~~~~~~~~~~~D~iv~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~L 120 (306)
+.+..-.-.+|.+++|+++|....|++.. ..++..+|+.+.+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 44555544478899999999543343321 024557788888889
Q ss_pred cCCeEEE
Q 021852 121 VDDGIVL 127 (306)
Q Consensus 121 ~p~G~~i 127 (306)
+|||+++
T Consensus 174 v~GG~mv 180 (334)
T PF03492_consen 174 VPGGRMV 180 (334)
T ss_dssp EEEEEEE
T ss_pred ccCcEEE
Confidence 9999998
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.2 Score=45.93 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=55.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee----ec-CCCce
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 90 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~-~~~~~ 90 (306)
..+.++.+||-.|+|. |.++..+|+ .|+++|+++|.+ +-.+.+++ .|.. .++...-.+ +. ...+.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCC
Confidence 4567889999999865 556666666 677789999987 66666543 3431 122211111 11 11236
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+-.. + . ...+....+.|+++|.++
T Consensus 260 ~d~vid~~-G----~----~~~~~~~~~~l~~~G~iv 287 (371)
T cd08281 260 VDYAFEMA-G----S----VPALETAYEITRRGGTTV 287 (371)
T ss_pred CCEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 89988421 1 1 123444457889999987
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.25 Score=45.03 Aligned_cols=96 Identities=20% Similarity=0.165 Sum_probs=55.6
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-ec--CCCceee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~--~~~~~~D 92 (306)
..+.++.+||-.|+|. |.++..+|+ .|+.+|+++|.+ +-.+.+++ .|...-+.....+..+ +. .+...+|
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4567899999999865 666666677 577679999987 66666543 3431111111111110 10 1224689
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+-. .+ .. ..+....+.++++|+++
T Consensus 248 ~vid~-~g----~~----~~~~~~~~~~~~~G~iv 273 (358)
T TIGR03451 248 VVIDA-VG----RP----ETYKQAFYARDLAGTVV 273 (358)
T ss_pred EEEEC-CC----CH----HHHHHHHHHhccCCEEE
Confidence 88842 11 11 23334457889999987
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.047 Score=40.35 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS 55 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s 55 (306)
+.....|||||.|+|...+.+-|. .=+|+|..
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 455799999999999999998776 67788853
|
; GO: 0008168 methyltransferase activity |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.14 Score=45.75 Aligned_cols=83 Identities=25% Similarity=0.195 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
.++.+||-+|+|. |.++..+|+ .|+..|+++|.+ +.++.|.+. . ++. ..+. ....+|+|+-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i~--~~~~--~~~g~Dvvid~- 207 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VLD--PEKD--PRRDYRAIYDA- 207 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------ccC--hhhc--cCCCCCEEEEC-
Confidence 3577899999875 777777777 688778888876 555544321 1 111 1110 12468988842
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+ . +..++...++|+++|+++
T Consensus 208 ~G----~----~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 208 SG----D----PSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred CC----C----HHHHHHHHHhhhcCcEEE
Confidence 21 1 224455567899999987
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.67 Score=40.03 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH----cC--CCEEEEEec-hH---------------------
Q 021852 5 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG--AAHVYAVEC-SQ--------------------- 56 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~----~g--~~~v~~iD~-s~--------------------- 56 (306)
..|...+..++.......-...|+|+|+-.|..++.++. .+ .+++++.|. ..
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 567788888888765444456899999999977665533 22 457888772 11
Q ss_pred -----HHHHHHHHHHHcCC-CCeEEEEEceeeeec--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 57 -----MANMAKQIVEANGF-SNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 57 -----~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
..+..++++++.++ .+++.++.+.+.+-. .+.+++-++..+. =.++ .-...|..+...|.|||+++.
T Consensus 136 ~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~----DlYe-sT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC----DLYE-STKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHH-HHHHHHHHHGGGEEEEEEEEE
T ss_pred cccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec----cchH-HHHHHHHHHHhhcCCCeEEEE
Confidence 11222333333343 357999999986532 2334554544431 1133 334567777888999999985
Q ss_pred cCc
Q 021852 129 DKA 131 (306)
Q Consensus 129 ~~~ 131 (306)
+..
T Consensus 211 DDY 213 (248)
T PF05711_consen 211 DDY 213 (248)
T ss_dssp SST
T ss_pred eCC
Confidence 554
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.19 Score=45.85 Aligned_cols=91 Identities=24% Similarity=0.423 Sum_probs=52.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEec---h-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVEC---S-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~---s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
..++.+||-+|+|. |.++..+|+ .|+ +|++++. + +-.+.+ ++.|.. .+.....+..+.. ....+|+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~----~~~Ga~-~v~~~~~~~~~~~-~~~~~d~v 242 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV----EELGAT-YVNSSKTPVAEVK-LVGEFDLI 242 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH----HHcCCE-EecCCccchhhhh-hcCCCCEE
Confidence 45788999999875 666776777 566 7999986 3 333443 334431 1111111111111 12468988
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+--. + . +..+....+.|+++|.++
T Consensus 243 id~~-g----~----~~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 243 IEAT-G----V----PPLAFEALPALAPNGVVI 266 (355)
T ss_pred EECc-C----C----HHHHHHHHHHccCCcEEE
Confidence 8531 1 1 124455668899999886
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.33 Score=44.00 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
..++.+||-+|+|. |.++..+++ .|+.+|+++|.+ +-++.+++ .+. ...+ .++. ....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~-~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhh-hccCCcEEEE
Confidence 46789999999876 666655555 466789999987 56666543 121 1111 1111 1124898884
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .+ . ...+..+....++|+++|+++
T Consensus 229 ~-~G----~-~~~~~~~~~~~~~l~~~G~iv 253 (341)
T cd08237 229 C-VG----G-RGSQSAINQIIDYIRPQGTIG 253 (341)
T ss_pred C-CC----C-CccHHHHHHHHHhCcCCcEEE
Confidence 2 21 1 112334555668999999987
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.23 Score=45.01 Aligned_cols=50 Identities=30% Similarity=0.310 Sum_probs=36.0
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHH
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAK 62 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~ 62 (306)
+.|.......+-..|.|+|+|.|.++.+++-...-.|+|||-| ...+.|+
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 3343434445667999999999999999987434489999988 5444443
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.045 Score=50.11 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=56.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCe-EEEEEceeeee
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNV-ITVLKGKIEEI 84 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~ 84 (306)
...+|..|-|+-||-|.+++.+++.+ .+|++-|.+ +++++.+.++..|.+.+. +++.+.|+.++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 35788999999999999999999987 599999999 999999999999988765 88888777654
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.21 Score=47.64 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-----------ec--
Q 021852 22 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-----------IE-- 85 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------~~-- 85 (306)
.++.+|+-+|+|. |..+..+++ .|+ .|+++|.+ +-++.+++ .|. +++.-+..+ +.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHH
Confidence 4568999999997 677777777 576 69999988 65555543 232 222212110 00
Q ss_pred --------CC--CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 --------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 --------~~--~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++ ...+|+|+.-.+.. +.....-+.++..+.+|||++++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Talip---G~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALIP---GKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcccC---CCCCCeeehHHHHhhCCCCCEEE
Confidence 11 25699998854322 11222224455668899999987
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.37 Score=41.91 Aligned_cols=96 Identities=20% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---CceeeEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~iv 95 (306)
...|+.|+-+| ---+.+++++-.| +++|..+|++ ..+....+.+++.|+ ++++.+.-|+++. +| ..+||+++
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~p-lpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNP-LPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhccc-ChHHHHhhCCeee
Confidence 34578899999 3336666666644 7799999999 799999999999998 4588888888764 33 36999999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCC
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDD 123 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~ 123 (306)
.+++... ..+..++..=...||..
T Consensus 227 TDPpeTi----~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 227 TDPPETI----KALKLFLGRGIATLKGE 250 (354)
T ss_pred cCchhhH----HHHHHHHhccHHHhcCC
Confidence 9875322 34444554433445443
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.39 Score=43.31 Aligned_cols=96 Identities=25% Similarity=0.190 Sum_probs=54.3
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 93 (306)
..+.++.+||-.|+|. |.++..+|+ .|+++|++++.+ +-.+.+++ .|...-+.....+...+. .....+|+
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 4567799999998764 555555666 677669999977 65555543 343211111111111111 12347999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+-.. .. ...+....+.|+++|.++
T Consensus 235 vid~~-----g~----~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIECS-----GN----TAARRLALEAVRPWGRLV 259 (339)
T ss_pred EEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 98531 11 123334457889999987
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.59 Score=43.58 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=56.5
Q ss_pred HHHHHhc-ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 12 QNVIYQN-KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 12 ~~ai~~~-~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
.+.|.+. ....+|++|+-+|+|. |.....+++ .|+ +|+++|.+ .-+..|++ .|. +.+ +..+. .
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~-v- 255 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA-V- 255 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH-H-
Confidence 3444433 2346899999999998 666555555 677 89999987 44444433 343 222 11222 1
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+... +....+-.+..+.+++||+++
T Consensus 256 -~~aDVVI~at--------G~~~~i~~~~l~~mk~Ggilv 286 (413)
T cd00401 256 -KEGDIFVTTT--------GNKDIITGEHFEQMKDGAIVC 286 (413)
T ss_pred -cCCCEEEECC--------CCHHHHHHHHHhcCCCCcEEE
Confidence 3579998632 122223334468899999987
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.3 Score=40.14 Aligned_cols=109 Identities=13% Similarity=0.232 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcccCCCCC-EEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCC--CeEEEEEcee
Q 021852 6 VRTKSYQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFS--NVITVLKGKI 81 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~-~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~ 81 (306)
.|+..+.+.+.+.....++. .|+.||||-=.....+... +..+++=+|..++++.-++.++..+.. .+.+++.+|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 46667777776554334554 9999999987777777763 344777777777777777776665321 2345688888
Q ss_pred eeec---------CCCceeeEEEEcccccccCCcchHHHHHHH
Q 021852 82 EEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYA 115 (306)
Q Consensus 82 ~~~~---------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~ 115 (306)
.+.. +.....-++++|.+..++ .+.....++..
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl-~~~~~~~ll~~ 181 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYL-SPEQVDALLRA 181 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS--HHHHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcC-CHHHHHHHHHH
Confidence 6532 224667788888765555 44455555554
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.42 Score=43.31 Aligned_cols=97 Identities=24% Similarity=0.250 Sum_probs=54.0
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 93 (306)
....++.+||-.|+|+ |.++..+|+ .|++.|++++.+ +-.+.+++ .|...-+.....+...+. .+...+|.
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCe
Confidence 3456789999998865 556666666 677678999877 55555533 343111111111111111 12346784
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++.+..+. ...+....+.|+++|.++
T Consensus 232 ~v~d~~G~--------~~~~~~~~~~l~~~G~iv 257 (347)
T PRK10309 232 LILETAGV--------PQTVELAIEIAGPRAQLA 257 (347)
T ss_pred EEEECCCC--------HHHHHHHHHHhhcCCEEE
Confidence 44443321 224455568889999987
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.087 Score=41.94 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEcee-eeecCCCceeeEEEEc-cc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISE-WM 99 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~D~iv~~-~~ 99 (306)
|++++-+|+..=..-.++.+.||++|..+|.+ +.-+..+.++ .++...+. .++..-.++||.+.|- .+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 67899999998777777778899999999976 2222222211 01111111 1111113678887772 12
Q ss_pred ccccC--------CcchHHHHHHHHhhcccCCeEEEecCceEEEEEeecc
Q 021852 100 GYFLL--------FENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 141 (306)
Q Consensus 100 ~~~~~--------~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~ 141 (306)
.++.+ ..+++. .+..+.++|||||.++ ...|+..+
T Consensus 74 Eh~GLGRYGDPidp~Gdl~-~m~~i~~vLK~GG~L~------l~vPvG~d 116 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLR-AMAKIKCVLKPGGLLF------LGVPVGTD 116 (177)
T ss_pred ccccccccCCCCCccccHH-HHHHHHHhhccCCeEE------EEeecCCc
Confidence 12211 123443 4455678999999987 55666643
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.24 Score=43.52 Aligned_cols=93 Identities=26% Similarity=0.217 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE--ceeeeecCCCceeeEEE
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK--GKIEEIELPVTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~D~iv 95 (306)
..++.+||-.|+|. |.++..+|+ .|+++|+++|.+ +-.+.+++ .|...-+.... ....++ .....+|+++
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vi 192 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGL-QNGRGVDVAL 192 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHH-hCCCCCCEEE
Confidence 45789999998875 566666666 677779999977 55555544 34311111100 001111 1224689988
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.. + . +..+....+.|+++|+++
T Consensus 193 d~~-G----~----~~~~~~~~~~l~~~G~iv 215 (280)
T TIGR03366 193 EFS-G----A----TAAVRACLESLDVGGTAV 215 (280)
T ss_pred ECC-C----C----hHHHHHHHHHhcCCCEEE
Confidence 421 1 1 223444557889999987
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.34 Score=41.75 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=57.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..+.+|..-.|+|+-.|.++-.+.+.+- .||++|...|+...-. . +.|+-...|-..+.....+.|-.||++
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~d----t---g~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMD----T---GQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhc----c---cceeeeeccCcccccCCCCCceEEeeh
Confidence 4567899999999999999999999866 9999999877554422 2 357777777777654357899999987
Q ss_pred c
Q 021852 99 M 99 (306)
Q Consensus 99 ~ 99 (306)
+
T Consensus 279 V 279 (358)
T COG2933 279 V 279 (358)
T ss_pred h
Confidence 5
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.57 Score=40.80 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=47.2
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHc------CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~------g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
-+.+...+.++..++|+|||.|.++.++++. ....++.||....-..+...++.......++=+..|+.++.+
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccch
Confidence 3444444567889999999999999999883 245899999642111333333333321246777778887763
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.56 Score=42.80 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=68.7
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHH-------HHHHHcCC-CCeEEEEEceeeeecC-
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAK-------QIVEANGF-SNVITVLKGKIEEIEL- 86 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~-------~~~~~~~~-~~~v~~~~~d~~~~~~- 86 (306)
...+.+++...|+|+|-|.+..++|. ++.+.-.|+|+. ...+.|. +..+..|- .+.+..++++..+...
T Consensus 187 El~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 187 ELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRV 266 (419)
T ss_pred HhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHH
Confidence 35678899999999999999887776 667778888864 3222222 22233333 3568888888755431
Q ss_pred --CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 --PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 --~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-...+++|+++-+ .+. +.+..=+..+..-+++|.++|
T Consensus 267 ~eI~~eatvi~vNN~---~Fd-p~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNV---AFD-PELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred HHHhhcceEEEEecc---cCC-HHHHHhhHHHHhhCCCcceEe
Confidence 1357899999754 222 333333336667789999887
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.29 Score=43.35 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=38.1
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHH
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQI 64 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~ 64 (306)
...+.+|.+|.-.|.|. |+...+-|+ +||++++|+|++ +-.+.|++.
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 35678999999999998 666667777 799999999988 777776553
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.46 Score=40.82 Aligned_cols=96 Identities=27% Similarity=0.280 Sum_probs=54.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-e-cCCCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~~D~i 94 (306)
....++.+||..|+|+ |.....+++....+|++++.+ +..+.+++ .+....+.....+... + ......+|++
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEE
Confidence 3447889999999986 556666666323589999987 55555533 2321111111101100 0 1123679999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...- .. .......+.|+++|.++
T Consensus 206 i~~~~-----~~----~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 206 IDAVG-----GP----ETLAQALRLLRPGGRIV 229 (271)
T ss_pred EECCC-----CH----HHHHHHHHhcccCCEEE
Confidence 86421 11 23444557889999987
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.92 Score=41.79 Aligned_cols=104 Identities=15% Similarity=0.241 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHc------------C----CCEEEEEec-h-HHHHHHHHHHH--H-----------cCCCC
Q 021852 24 DKVVLDVGAGTGILSLFCAKA------------G----AAHVYAVEC-S-QMANMAKQIVE--A-----------NGFSN 72 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~------------g----~~~v~~iD~-s-~~~~~a~~~~~--~-----------~~~~~ 72 (306)
..+|+|+|||+|..++.+... + --+|+.-|. + +.-...+..-. . .+-..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 558999999999887655320 1 125777773 2 33222222111 0 11000
Q ss_pred -eEEEEEceeeeecCCCceeeEEEEcccccccCC-----------------------------------cchHHHHHHHH
Q 021852 73 -VITVLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------------------------------ENMLNTVLYAR 116 (306)
Q Consensus 73 -~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~-----------------------------------~~~~~~~l~~~ 116 (306)
=+..+.+..-.-.+|.++.+++.|....|++.. ..++..+|+.+
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222333333367889999998654444431 11455777888
Q ss_pred hhcccCCeEEE
Q 021852 117 DKWLVDDGIVL 127 (306)
Q Consensus 117 ~~~L~p~G~~i 127 (306)
.+-|.|||.++
T Consensus 224 a~ELvpGG~mv 234 (386)
T PLN02668 224 AQEMKRGGAMF 234 (386)
T ss_pred HHHhccCcEEE
Confidence 88899999997
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.81 Score=40.33 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=56.1
Q ss_pred ccCCCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---------
Q 021852 19 KFLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--------- 85 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 85 (306)
.....|.+||-=|+|+| .+++.+|+.|+ ++...|++ +......+.++++| ++....+|+.+..
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHH
Confidence 33456889999999998 45777788888 88899987 66665556666665 5788888886653
Q ss_pred -CCCceeeEEEEcc
Q 021852 86 -LPVTKVDIIISEW 98 (306)
Q Consensus 86 -~~~~~~D~iv~~~ 98 (306)
-+-+.+|++|.+.
T Consensus 109 k~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 109 KKEVGDVDILVNNA 122 (300)
T ss_pred HHhcCCceEEEecc
Confidence 1246899999873
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.19 Score=44.40 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=39.1
Q ss_pred eEEEEEceeeee--cCCCceeeEEEEcccccccC--------------CcchHHHHHHHHhhcccCCeEEE
Q 021852 73 VITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL--------------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 73 ~v~~~~~d~~~~--~~~~~~~D~iv~~~~~~~~~--------------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+++++|+.+. .++++++|+|++++. |... +...+...+.++.++|||||.++
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~ 77 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMY 77 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 357888998875 266789999999975 3221 01223567888999999999987
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.54 Score=41.67 Aligned_cols=72 Identities=26% Similarity=0.292 Sum_probs=50.2
Q ss_pred EEEcCCCcHH-HHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-------CCceeeEEEEcc
Q 021852 28 LDVGAGTGIL-SLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-------PVTKVDIIISEW 98 (306)
Q Consensus 28 LDlG~G~G~l-~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~~D~iv~~~ 98 (306)
+|||+|.--+ .+.-++...-...|+|++ .-...|++++..|+++..+.+++....+..+ ++.-||.+.|++
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNP 186 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNP 186 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCC
Confidence 7888887432 322233222368899998 5689999999999999989888875433221 235699999997
Q ss_pred c
Q 021852 99 M 99 (306)
Q Consensus 99 ~ 99 (306)
.
T Consensus 187 P 187 (419)
T KOG2912|consen 187 P 187 (419)
T ss_pred c
Confidence 5
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.58 Score=41.47 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=64.0
Q ss_pred CCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 24 DKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 24 ~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
+.+|.-||.|. |.-+...|- .|+ .|+-+|.| +-++.....+. .++..+..+...+.-.-.++|++|...+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL- 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL- 240 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE-
Confidence 35677788776 444333333 455 99999998 76666654432 4688887777666544468999998654
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
......+.-+.+++.+.+|||++++
T Consensus 241 --IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 --IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred --ecCCCCceehhHHHHHhcCCCcEEE
Confidence 2344555556677788999999987
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.46 Score=42.61 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=39.5
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHH
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQI 64 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~ 64 (306)
...+.+|.+|.-+|||. |+.++..|+ +|+.+++|+|++ +-++.|++.
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 45678999999999997 888888887 799999999998 777777653
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.26 Score=44.36 Aligned_cols=66 Identities=26% Similarity=0.324 Sum_probs=48.2
Q ss_pred EEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC-CceeeEEEEccc
Q 021852 27 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 99 (306)
Q Consensus 27 VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~ 99 (306)
|+|+-||.|.+++-+.++|...+.++|++ ..++..+.+. ++ .++.+|+.++... -..+|+++..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~-----~~--~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF-----GN--KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC-----CC--CCCccChhhhhhhhCCCcCEEEecCC
Confidence 68999999999999999998788899998 5655555543 22 4556777776521 235899998654
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.8 Score=38.64 Aligned_cols=96 Identities=22% Similarity=0.211 Sum_probs=56.3
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-e-cCCCceee
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVD 92 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~~D 92 (306)
...+.++.+||..|+|. |..+..+|+ .|. +|++++.+ +..+.+++ .+....+.....+..+ + ..+...+|
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 34467788999988764 677777777 555 69999987 66666543 3432111111111100 0 12346799
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++... .. ...+....+.|+++|.++
T Consensus 235 ~vid~~-----g~----~~~~~~~~~~l~~~G~~v 260 (338)
T cd08254 235 VIFDFV-----GT----QPTFEDAQKAVKPGGRIV 260 (338)
T ss_pred EEEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 888531 01 234555668999999987
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.4 Score=39.58 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce---eeeecCCCceeeEEEE
Q 021852 23 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK---IEEIELPVTKVDIIIS 96 (306)
Q Consensus 23 ~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~D~iv~ 96 (306)
++.+||..|+|. |..+..+|+ .|..+|++++.+ +..+.+++ .+. + .++..+ ...+......+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGA-D--ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCC-C--EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999988765 555666666 566689999977 66555443 233 1 122211 1112112245999986
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..- . ...+....+.|+++|+++
T Consensus 238 ~~g-----~----~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 238 ASG-----A----PAALASALRVVRPGGTVV 259 (339)
T ss_pred CCC-----C----HHHHHHHHHHHhcCCEEE
Confidence 321 1 123445568889999987
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.52 Score=39.62 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=48.8
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
+.......+-|++||.|.|.++..+..+|+.+...+|.+ ..+.-.+...++.. .+..+.++|+...
T Consensus 44 K~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 44 KKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRF 110 (326)
T ss_pred HhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEecccccee
Confidence 334455678899999999999999999999899999987 56555544443332 3678888887544
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.29 Score=41.84 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=38.1
Q ss_pred EEEEceeeee--cCCCceeeEEEEcccccccC-----C--------cchHHHHHHHHhhcccCCeEEE
Q 021852 75 TVLKGKIEEI--ELPVTKVDIIISEWMGYFLL-----F--------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 75 ~~~~~d~~~~--~~~~~~~D~iv~~~~~~~~~-----~--------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++++|..++ .++++++|+|++++. |... + .......+.++.|+|||||.++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 5778888765 478899999999975 4321 0 1234567888899999999876
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.4 Score=38.12 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHc---------CCCEEEEEech-HHHHHHHHHHHHc-----CCCCeEEEEEceeeeecCCC
Q 021852 24 DKVVLDVGAGTGILSLFCAKA---------GAAHVYAVECS-QMANMAKQIVEAN-----GFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~---------g~~~v~~iD~s-~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~ 88 (306)
.-+|+|+|+|+|.++.-+.+. ...+++.+|.| .+.+.-++.+... ....+|... .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 469999999999998777651 13489999999 6766666665432 233456662 2333222
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
..-+|+++-
T Consensus 95 -~~~~iiaNE 103 (252)
T PF02636_consen 95 -FPGFIIANE 103 (252)
T ss_dssp -CCEEEEEES
T ss_pred -CCEEEEEee
Confidence 345667654
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.52 Score=42.63 Aligned_cols=70 Identities=29% Similarity=0.282 Sum_probs=51.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC--c-eeeEEEEccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV--T-KVDIIISEWM 99 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~~D~iv~~~~ 99 (306)
..+++|+-||.|.+.+-+.++|..-+.++|++ ..++.-+.+... ..++..|+.++.... . .+|+++..+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 35799999999999999999998889999999 555555444321 456667776654221 2 7999998654
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.5 Score=35.54 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=58.0
Q ss_pred EEcCCCcHHHHHHHH-cC-CCEEEEEech---HHHHH---HHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEE
Q 021852 29 DVGAGTGILSLFCAK-AG-AAHVYAVECS---QMANM---AKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 96 (306)
Q Consensus 29 DlG~G~G~l~~~~a~-~g-~~~v~~iD~s---~~~~~---a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~ 96 (306)
-||-|.=.+++.+++ .+ ...++|.-.+ +..+. +.++++...-.+.......|++++. ....+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 467777777778877 34 5577776543 23222 2234333211111223444666554 24578999999
Q ss_pred ccccccc----------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFL----------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~----------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+..+. .+...+..++..+.++|+++|.+.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~Ih 122 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIH 122 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 8654331 112355677888889999999986
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=89.91 E-value=5.5 Score=33.50 Aligned_cols=96 Identities=21% Similarity=0.308 Sum_probs=55.8
Q ss_pred CCEEEEEcCCCc----HHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eeecCCCceeeEEEE
Q 021852 24 DKVVLDVGAGTG----ILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIIS 96 (306)
Q Consensus 24 ~~~VLDlG~G~G----~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~D~iv~ 96 (306)
-+.+++..|+-| .+++.+|. +-..+++.|-.+ +-....++.+...++.+.++|+.++. +++...-..+|.++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 457888865543 23333333 323367777766 55666677777778877789998885 344323357899887
Q ss_pred cccccccCCcchHH-HHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLN-TVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~-~~l~~~~~~L~p~G~~i 127 (306)
+. ...+.. .+++.+ + +.|.|-++
T Consensus 122 Dc------~~~d~~~~vl~~~-~-~~~~GaVV 145 (218)
T PF07279_consen 122 DC------KREDFAARVLRAA-K-LSPRGAVV 145 (218)
T ss_pred eC------CchhHHHHHHHHh-c-cCCCceEE
Confidence 53 112333 555543 2 44555544
|
The function of this family is unknown. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=89.73 E-value=2.4 Score=38.37 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=55.3
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-----c-CCCc
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-----E-LPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~ 89 (306)
....++.+||-.|+|. |..+..+|+ .|+..|++++.+ +..+.+++ .|.. .++...-.++ . .+..
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCCC
Confidence 4567789999998764 555666666 677789999977 55555543 3432 1222111111 0 1235
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++-.. .. ...+....+.|+++|+++
T Consensus 235 ~~d~vld~~-----g~----~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 235 GVDAVIIAG-----GG----QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred CCcEEEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 699988531 11 124455567889999987
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.48 E-value=3.1 Score=34.37 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH----cC-CCEEEEEech-HHHH-HHHHHHHHcCCCCeEEEEEce
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECS-QMAN-MAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~----~g-~~~v~~iD~s-~~~~-~a~~~~~~~~~~~~v~~~~~d 80 (306)
.-.|++.|-+ .+...|++.|.-.|..+++.|. .| ..+|.++|++ .-.+ .|++ . .+|.+++++
T Consensus 58 ~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~-p~i~f~egs 126 (237)
T COG3510 58 MWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------V-PDILFIEGS 126 (237)
T ss_pred HHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------C-CCeEEEeCC
Confidence 4456666553 4567999999999877777665 34 2489999998 5433 3332 2 469999999
Q ss_pred eeeec-------CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 81 IEEIE-------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 81 ~~~~~-------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.. +..+.--+.++.--.| .....-+-++...++|.-|..++
T Consensus 127 s~dpai~eqi~~~~~~y~kIfvilDsdH---s~~hvLAel~~~~pllsaG~Y~v 177 (237)
T COG3510 127 STDPAIAEQIRRLKNEYPKIFVILDSDH---SMEHVLAELKLLAPLLSAGDYLV 177 (237)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEecCCc---hHHHHHHHHHHhhhHhhcCceEE
Confidence 87764 1223334444432112 22333345666778888888876
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.6 Score=43.45 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-c-------C-----CCEEEEEech----HHHH-----------HHHHHHHH-----cC
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-A-------G-----AAHVYAVECS----QMAN-----------MAKQIVEA-----NG 69 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~-------g-----~~~v~~iD~s----~~~~-----------~a~~~~~~-----~~ 69 (306)
+.-+|+|+|=|+|...+.+.+ . . .-+++++|.. +-+. .+++..+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346999999999986555542 1 1 1279999952 1111 11122111 12
Q ss_pred C------CC--eEEEEEceeeeec--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 F------SN--VITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 ~------~~--~v~~~~~d~~~~~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ .+ .+++..+|+.+.. +. .++|+++.+.+...-..+-.-+.++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~-~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLD-ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhcc-ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 01 3446667765532 22 569999998654433333344688999999999999987
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.27 E-value=10 Score=32.76 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH----cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVD 92 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~----~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D 92 (306)
...++..+|+|+|+..-+.++.. .| ..+.+.+|+| .+++...+.+...-..-.+.-+.++.+... +|...--
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 45688999999999866655544 33 4589999999 776654444333222224556666654321 2322222
Q ss_pred EEEE--cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIIS--EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~--~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++. ..+|.+ ..+....++..+...++||-.++
T Consensus 156 l~~flGStlGN~--tp~e~~~Fl~~l~~a~~pGd~~L 190 (321)
T COG4301 156 LFVFLGSTLGNL--TPGECAVFLTQLRGALRPGDYFL 190 (321)
T ss_pred EEEEecccccCC--ChHHHHHHHHHHHhcCCCcceEE
Confidence 2222 233322 33455678888999999998776
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.8 Score=34.84 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=48.4
Q ss_pred CCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCceeeEEEEcccccccC
Q 021852 33 GTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL 104 (306)
Q Consensus 33 G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~D~iv~~~~~~~~~ 104 (306)
|.|.++..+|+ .| .+|+++|.+ .-.+.+++ .|. + .++..+-.++. .+...+|+|+--. .
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga-~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGA-D--HVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----G 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTE-S--EEEETTTSSHHHHHHHHTTTSSEEEEEESS-----S
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hcc-c--ccccccccccccccccccccccceEEEEec-----C
Confidence 35788888888 67 799999988 56666544 443 1 22322222111 2335899998521 1
Q ss_pred CcchHHHHHHHHhhcccCCeEEE
Q 021852 105 FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 105 ~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ...++....+|+++|.++
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v 86 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIV 86 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEE
T ss_pred c----HHHHHHHHHHhccCCEEE
Confidence 1 345556668999999987
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.72 E-value=4 Score=36.73 Aligned_cols=88 Identities=17% Similarity=0.042 Sum_probs=52.4
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
..+.++.+||-.|+|. |.++..+|+ .|+ +|++++.+ +-.+.+++ .|... ++.. .+. ..+.+|+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~~--~~~--~~~~~d~~i 228 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGGA--YDT--PPEPLDAAI 228 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---eccc--ccc--CcccceEEE
Confidence 4567899999999864 555555666 566 79999977 55555544 45421 2211 111 124578665
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.. . . ...+....+.|+++|+++
T Consensus 229 ~~~----~----~-~~~~~~~~~~l~~~G~~v 251 (329)
T TIGR02822 229 LFA----P----A-GGLVPPALEALDRGGVLA 251 (329)
T ss_pred ECC----C----c-HHHHHHHHHhhCCCcEEE
Confidence 311 1 1 124555668899999986
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=88.71 E-value=4.5 Score=36.03 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC-CEEEEEechHHHHHHHHHHHHcCCC--CeEEEEEcee
Q 021852 5 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQMANMAKQIVEANGFS--NVITVLKGKI 81 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~ 81 (306)
..|++.|.+.+.+...-. ...|+-||||-=.=+..+-. +. .+|+=+|.-++++.=++.++..+.. ..++.+..|+
T Consensus 75 a~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~-~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl 152 (297)
T COG3315 75 AARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDW-PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDL 152 (297)
T ss_pred HHHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCC-CCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccc
Confidence 457777777777654333 57899999995322222222 22 4777777777888777777777643 3688999998
Q ss_pred eeec----C-----CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 82 EEIE----L-----PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 82 ~~~~----~-----~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+-. + ....--++++|.+..++ .+.....++..+..+..||-.++
T Consensus 153 ~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL-~~~~v~~ll~~I~~~~~~gS~~~ 206 (297)
T COG3315 153 REDDWPQALAAAGFDRSRPTLWIAEGLLMYL-PEEAVDRLLSRIAALSAPGSRVA 206 (297)
T ss_pred cccchHHHHHhcCCCcCCCeEEEeccccccC-CHHHHHHHHHHHHHhCCCCceEE
Confidence 7432 2 23455688888765555 56677889999988888887776
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=5.2 Score=36.92 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=61.7
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCe-EEEEEceeeeecCCCceeeEEEEcccccccC
Q 021852 26 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWMGYFLL 104 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~ 104 (306)
.||-++-.-|.++..++..+...+ .|.--.-...+++++.|+++.. ++.+.. .+ ++| +.+|+|+.-+. -
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-~~~-~~~d~vl~~~P----K 116 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDS--TA-DYP-QQPGVVLIKVP----K 116 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeecc--cc-ccc-CCCCEEEEEeC----C
Confidence 799999999999999997544211 2321233445788999998643 555532 22 234 56999997542 2
Q ss_pred CcchHHHHHHHHhhcccCCeEEE
Q 021852 105 FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 105 ~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....++..+..+...|.||+.++
T Consensus 117 ~~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 117 TLALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEE
Confidence 23456677788889999999987
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.48 E-value=2.4 Score=40.30 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---------------
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--------------- 87 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------------- 87 (306)
.-+++|+-||.|.+++-+-++|...|.++|++ ..++.-+.+... - .....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~--~-p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC--D-PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC--C-CccceeccChhhCccccccccchhhhhhhhh
Confidence 45999999999999999988898889999998 555544444211 0 1233445566554311
Q ss_pred --CceeeEEEEccc
Q 021852 88 --VTKVDIIISEWM 99 (306)
Q Consensus 88 --~~~~D~iv~~~~ 99 (306)
...+|+++..+.
T Consensus 165 ~~~p~~DvL~gGpP 178 (467)
T PRK10458 165 QHIPDHDVLLAGFP 178 (467)
T ss_pred ccCCCCCEEEEcCC
Confidence 125799888643
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=88.15 E-value=4.1 Score=36.97 Aligned_cols=94 Identities=21% Similarity=0.242 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee----eec--CCCcee
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE----EIE--LPVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~--~~~~~~ 91 (306)
..++.+||-.|+|. |..+..+|+ .|+++|++++.+ +-...++ ..+...-+.....+.. .+. .+...+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 34788999998653 444555555 577689999876 5444443 3344211111111110 010 123569
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++-.. + . ...+....+.|+++|+++
T Consensus 251 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 277 (361)
T cd08231 251 DVVIEAS-G----H----PAAVPEGLELLRRGGTYV 277 (361)
T ss_pred cEEEECC-C----C----hHHHHHHHHHhccCCEEE
Confidence 9988531 1 1 123444557889999987
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.68 E-value=3.9 Score=36.55 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 87 (306)
..++++|-.|+++|+ ++..+++.|+ +|+.+..+ +-.+.+.+.+....-..++.++..|+.+.. -.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 457899999987763 2444455676 88888866 544444444433221235888888886653 01
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 25789999874
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.6 Score=40.22 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=33.8
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHH
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~ 63 (306)
..+.+|.+||-.|+|. |.++..+|+ .|+.+|+++|.+ +-++.+++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 4577899999999875 666666666 677689999987 66666644
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.55 E-value=4.5 Score=37.54 Aligned_cols=101 Identities=25% Similarity=0.178 Sum_probs=56.8
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc---eeee-ec--CCCc
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG---KIEE-IE--LPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~~~-~~--~~~~ 89 (306)
..+.++.+||-.|+|. |.++..+|+ .|++.|+++|.+ +-++.|++ .|. + .+... +..+ +. ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga-~--~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGC-E--TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCC-e--EEecCCcccHHHHHHHHcCCC
Confidence 4467788998888875 666666666 688778877876 55666554 343 2 12211 1111 11 1234
Q ss_pred eeeEEEEccccccc------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++-- .+.-- ..+......+....++++++|.++
T Consensus 254 g~Dvvid~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~ 296 (393)
T TIGR02819 254 EVDCAVDC-VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIG 296 (393)
T ss_pred CCcEEEEC-CCCccccccccccccchHHHHHHHHHHhhCCCEEE
Confidence 68988853 22100 000111235555668999999987
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.50 E-value=5.2 Score=36.80 Aligned_cols=96 Identities=27% Similarity=0.274 Sum_probs=53.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc---e----eeeecCCC
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG---K----IEEIELPV 88 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d----~~~~~~~~ 88 (306)
..+.++.+||-.|+|. |..++.+|+ .|+.+|++++.+ +-.+.++ ..|...-+..... + +..+ .+.
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~~v~~~-~~g 273 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAK----EMGADYVFNPTKMRDCLSGEKVMEV-TKG 273 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCEEEcccccccccHHHHHHHh-cCC
Confidence 3567888999887754 444555555 677689999976 5433433 3344211111110 1 1111 233
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+.. .+ .....+....+.|+++|+++
T Consensus 274 ~gvDvvld~-~g-------~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 274 WGADIQVEA-AG-------APPATIPQMEKSIAINGKIV 304 (384)
T ss_pred CCCCEEEEC-CC-------CcHHHHHHHHHHHHcCCEEE
Confidence 569998853 11 11223445567889999987
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=87.48 E-value=2.9 Score=37.65 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=53.3
Q ss_pred cCCCC--CEEEEEcC--CCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCC
Q 021852 20 FLFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPV 88 (306)
Q Consensus 20 ~~~~~--~~VLDlG~--G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 88 (306)
.+.++ .+||-.|+ |.|..+..+|+ .|+.+|++++.+ +..+.+++. .|... ++...-.++. +..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~---vi~~~~~~~~~~i~~~~~ 222 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDA---AINYKTDNVAERLRELCP 222 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcE---EEECCCCCHHHHHHHHCC
Confidence 35555 89999986 34667777777 576689999877 555555432 34421 2221111110 122
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+-. .+ . . .+....+.|+++|.++
T Consensus 223 ~gvd~vid~-~g----~-~----~~~~~~~~l~~~G~iv 251 (345)
T cd08293 223 EGVDVYFDN-VG----G-E----ISDTVISQMNENSHII 251 (345)
T ss_pred CCceEEEEC-CC----c-H----HHHHHHHHhccCCEEE
Confidence 569999852 11 1 1 1244557899999987
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.8 Score=39.67 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=33.7
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHH
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~ 63 (306)
..+.++.+||-.|+|. |.++..+|+ .|+++|+++|.+ +-.+.+++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4567899999999875 666666677 677789999987 66666644
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.43 E-value=2.9 Score=37.77 Aligned_cols=96 Identities=23% Similarity=0.263 Sum_probs=53.4
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee-eec--CCCceee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE-EIE--LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~--~~~~~~D 92 (306)
....++.+||-.|+|. |.++..+|+ .|+.+|++++.+ +..+.+++ .+...-+.....+.. .+. .+...+|
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 4567889999998653 444455555 577689999876 66665543 243211111111111 010 1224599
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++-.. + . ...+....+.|+++|.++
T Consensus 244 ~vid~~-g----~----~~~~~~~~~~l~~~G~~v 269 (351)
T cd08233 244 VSFDCA-G----V----QATLDTAIDALRPRGTAV 269 (351)
T ss_pred EEEECC-C----C----HHHHHHHHHhccCCCEEE
Confidence 998531 1 1 123445567899999887
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.25 E-value=3.7 Score=33.59 Aligned_cols=92 Identities=24% Similarity=0.268 Sum_probs=57.0
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH--------cCCC--------CeEEEEEceeeeecC
Q 021852 26 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA--------NGFS--------NVITVLKGKIEEIEL 86 (306)
Q Consensus 26 ~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~--------~~~~--------~~v~~~~~d~~~~~~ 86 (306)
+|.-+|+|+ | .++..++..|. +|+.+|.+ +.++.+++.++. ..+. .++++. .|+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH--
Confidence 467789987 4 55667777776 99999988 777777665543 1111 234432 344433
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+=... ........++.++.+.+.|+.++.
T Consensus 77 --~~adlViEai~----E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 77 --VDADLVIEAIP----EDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp --CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred --hhhheehhhcc----ccHHHHHHHHHHHHHHhCCCceEE
Confidence 25898885432 233456688889999999998886
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=87.13 E-value=13 Score=29.94 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=63.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec-CC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-LP 87 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~ 87 (306)
+...+.+.+. ..++.+|+-|||=|-...+.-......+++..|.+. +.+..+ ++ .++.=|..... ++
T Consensus 13 ~~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~~~--~~-~F~fyD~~~p~~~~ 80 (162)
T PF10237_consen 13 EFLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQFG--GD-EFVFYDYNEPEELP 80 (162)
T ss_pred HHHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHhcC--Cc-ceEECCCCChhhhh
Confidence 3444555532 345689999999884444443223455899999882 222211 22 34433433211 11
Q ss_pred ---CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 ---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ---~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++|+||+++. | ..+..+......+..++++++.++
T Consensus 81 ~~l~~~~d~vv~DPP--F-l~~ec~~k~a~ti~~L~k~~~kii 120 (162)
T PF10237_consen 81 EELKGKFDVVVIDPP--F-LSEECLTKTAETIRLLLKPGGKII 120 (162)
T ss_pred hhcCCCceEEEECCC--C-CCHHHHHHHHHHHHHHhCccceEE
Confidence 369999999985 2 466777777788877889988887
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.13 E-value=4.4 Score=36.80 Aligned_cols=95 Identities=21% Similarity=0.156 Sum_probs=55.1
Q ss_pred ccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc-eeee-ec-CCCcee
Q 021852 19 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG-KIEE-IE-LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~~-~~~~~~ 91 (306)
..+.+|.+||-.|+ | .|.++..+|+ .|+ +|++++.+ +-.+.+++ ..|...-+..... +..+ +. .....+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 45678999999998 3 4777777777 566 79998876 55555432 2344211111111 1111 10 112468
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++-. . +. ..+....+.|+++|.++
T Consensus 230 D~v~d~-v-----G~----~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 230 DIYFDN-V-----GG----DMLDAALLNMKIHGRIA 255 (348)
T ss_pred EEEEEC-C-----CH----HHHHHHHHHhccCCEEE
Confidence 998842 1 11 23445567899999987
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=87.09 E-value=6.5 Score=32.80 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 55 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s 55 (306)
+..+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467899999996 3 45777888898889988865
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.88 E-value=1.1 Score=40.95 Aligned_cols=93 Identities=25% Similarity=0.302 Sum_probs=54.5
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee----ec-CCCce
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 90 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~-~~~~~ 90 (306)
..+.++.+||-.|+|. |.++..+|+ .|+.+|++++.+ ...+.+++ .+. + .++..+-.+ +. .....
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~-~--~~i~~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGA-T--HVINPKEEDLVAAIREITGGG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC-c--EEecCCCcCHHHHHHHHhCCC
Confidence 3456789999998764 566666666 677789999987 55555443 232 1 222211111 10 11356
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+-.. + .. ..+....+.|+++|.++
T Consensus 255 ~d~vld~~-g----~~----~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 255 VDYALDTT-G----VP----AVIEQAVDALAPRGTLA 282 (365)
T ss_pred CcEEEECC-C----Cc----HHHHHHHHHhccCCEEE
Confidence 89988531 1 11 23445567889999887
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=86.79 E-value=5.9 Score=35.56 Aligned_cols=96 Identities=27% Similarity=0.366 Sum_probs=52.8
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-ec--CCCceee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~--~~~~~~D 92 (306)
....++.+||..|+|. |..+..+|+ .|..+|++++.+ ...+.+++ .+....+.....+..+ +. .+...+|
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 3456788999977653 555666666 565588898766 45554443 2321111111111111 10 2335799
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++... + . ...+....+.|+++|+++
T Consensus 239 ~vld~~-g----~----~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 239 CVIEAV-G----F----EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred EEEEcc-C----C----HHHHHHHHHHhhcCCEEE
Confidence 988531 1 1 124555567889999987
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.66 E-value=2.6 Score=38.01 Aligned_cols=97 Identities=25% Similarity=0.277 Sum_probs=54.6
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce----eeee--cCCC
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK----IEEI--ELPV 88 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~~~~--~~~~ 88 (306)
...+.++.+||-.|+|. |..+..+|+ .|++.|++++.+ +..+.+++. +...-+.....+ ...+ ..+.
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCC
Confidence 35567889999987764 555556666 577558998876 555555432 331111111111 1111 1233
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+-.. + . ...+....+.|+++|.++
T Consensus 233 ~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 233 KGPDVVIECT-G----A----ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 5699998531 1 1 113445567889999887
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.59 E-value=1.8 Score=39.30 Aligned_cols=76 Identities=28% Similarity=0.288 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEechH----------------------HHHHHHHHHHHcCCCCeEEEE
Q 021852 22 FKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVL 77 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s~----------------------~~~~a~~~~~~~~~~~~v~~~ 77 (306)
..+++||-+|||. | .++..++++|..+++.+|.+. -++.|++.+++.+-.-+++.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 3567899999995 3 456777888998999998641 234455555554433346666
Q ss_pred EceeeeecCC--CceeeEEEEc
Q 021852 78 KGKIEEIELP--VTKVDIIISE 97 (306)
Q Consensus 78 ~~d~~~~~~~--~~~~D~iv~~ 97 (306)
..++..-.+. -..+|+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEc
Confidence 5554321111 2569999974
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.30 E-value=5.5 Score=35.53 Aligned_cols=94 Identities=26% Similarity=0.244 Sum_probs=54.5
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----cCCCce
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTK 90 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~ 90 (306)
...+.++.+||..|+|. |..+..+|+ .|.++|++++.+ +..+.+++ .+.. .++..+-.+. ..+...
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCC
Confidence 34567889999998653 455555556 566558888877 66655533 2332 2222221111 123357
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++... + . ...+....+.|+++|.++
T Consensus 227 vd~v~~~~-~----~----~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 227 FDVVIEAT-G----V----PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred CcEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 99999631 1 1 124444567889999886
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.93 E-value=6 Score=31.00 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=43.8
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
.+.+++++.....++++|+-+|+|. | .++..+++.|...|+.+|.+ +-.+...+...... +.....+..+.
T Consensus 5 g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~-- 78 (155)
T cd01065 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL-- 78 (155)
T ss_pred HHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--
Confidence 3556666543335678999999874 1 22333344555689999977 44433333322111 11112222222
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
.+.+|+|++..
T Consensus 79 -~~~~Dvvi~~~ 89 (155)
T cd01065 79 -LAEADLIINTT 89 (155)
T ss_pred -cccCCEEEeCc
Confidence 26789999864
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.73 E-value=8.2 Score=34.79 Aligned_cols=91 Identities=25% Similarity=0.309 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee----ec-CCCceee
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTKVD 92 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~-~~~~~~D 92 (306)
..++.+||-.|+|. |..+..+|+ .|+++|++++.+ +..+.+++ .|. + .++...-.+ +. ...+.+|
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~-~--~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGA-D--VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC-c--EEecCCCccHHHHHHHHhCCCCc
Confidence 34788999997654 555555566 677789999876 55555533 243 1 222221111 11 1113689
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++... + . ...+....+.|+++|.++
T Consensus 246 ~vid~~-g----~----~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 246 AVIDFV-N----N----SATASLAFDILAKGGKLV 271 (350)
T ss_pred EEEECC-C----C----HHHHHHHHHHhhcCCeEE
Confidence 998531 1 1 123455567889999887
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.61 E-value=4.9 Score=36.70 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=49.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HH-HHHHHHHHHHcCCCCeEEEEEc-eeeeecCCCceeeEEE
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QM-ANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~-~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~D~iv 95 (306)
..++.+||-.|+|. |.++..+|+ .|+ +|++++.+ +- ...++ +.|.. .++.. +...+....+.+|+++
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~----~~Ga~---~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN----RLGAD---SFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH----hCCCc---EEEcCCCHHHHHhhcCCCCEEE
Confidence 45788999999875 666666777 566 78888865 32 22222 23431 12211 1111110012489888
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-. .+ . ...+....+.|+++|.++
T Consensus 253 d~-~g-------~-~~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 253 DT-VS-------A-VHALGPLLGLLKVNGKLI 275 (360)
T ss_pred EC-CC-------C-HHHHHHHHHHhcCCcEEE
Confidence 42 21 1 123444567899999987
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=85.48 E-value=4 Score=37.01 Aligned_cols=44 Identities=34% Similarity=0.379 Sum_probs=32.6
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHH
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~ 63 (306)
..+.++.+||-.|+|. |.++..+|+ .|+ +|++++.+ +.++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4567899999999965 666666676 566 79999977 66666643
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=85.35 E-value=2.8 Score=35.05 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=26.8
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech
Q 021852 22 FKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 55 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s 55 (306)
..+.+||-+|||. | ..+..+++.|.++++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3567899999995 4 45667778899999999855
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.11 E-value=4 Score=37.06 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc---------CCCEEEEEech-HHHHHHHHHHHH
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA---------GAAHVYAVECS-QMANMAKQIVEA 67 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~---------g~~~v~~iD~s-~~~~~a~~~~~~ 67 (306)
......++++|+|+|.++.-+.+. .+.+++.||.| +....-+++++.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 344568999999999987655441 25689999999 666555555553
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.92 E-value=14 Score=31.06 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----C
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP-----V 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 88 (306)
++++||-.|++.|. ++..+++.|+ +|++++.+ +-+..+.+..... .++.++.+|+.+.. +. .
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56799999987542 2333344666 89999976 4444443333322 25778888876532 00 1
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 3578888764
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=84.92 E-value=6.8 Score=34.95 Aligned_cols=96 Identities=18% Similarity=0.096 Sum_probs=54.9
Q ss_pred hcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc-eeeee--cCCCc
Q 021852 17 QNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG-KIEEI--ELPVT 89 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--~~~~~ 89 (306)
....+.+|.+||-.|+ | .|.++..+|+ .|+ +|++++.+ +-.+.+++ .|...-+..... +..+. ....+
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCC
Confidence 3355778999999985 3 4677777777 566 79988876 55555533 454211111110 11111 01234
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++-. .+ . . .+....+.|+++|+++
T Consensus 207 gvdvv~d~-~G----~----~-~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 207 GYDCYFDN-VG----G----E-FSNTVIGQMKKFGRIA 234 (325)
T ss_pred CeEEEEEC-CC----H----H-HHHHHHHHhCcCcEEE
Confidence 69998842 11 1 1 2344557899999987
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.86 E-value=7.1 Score=36.65 Aligned_cols=92 Identities=26% Similarity=0.271 Sum_probs=52.4
Q ss_pred HHHHhccc-CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 13 NVIYQNKF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 13 ~ai~~~~~-~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
++|.+... ...|++|+-+|+|. |......++ .|+ +|+.+|.+ .....+. ..|. ++. ++.+..
T Consensus 200 ~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~----~~G~----~v~--~l~eal--- 265 (425)
T PRK05476 200 DGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAA----MDGF----RVM--TMEEAA--- 265 (425)
T ss_pred HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHH----hcCC----Eec--CHHHHH---
Confidence 44444322 34899999999987 444333333 666 89999987 3322221 1232 222 233321
Q ss_pred ceeeEEEEcccccccCCcchHHHHHH-HHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLY-ARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~-~~~~~L~p~G~~i 127 (306)
..+|+|+... +.. .++. .....+|+|++++
T Consensus 266 ~~aDVVI~aT--------G~~-~vI~~~~~~~mK~Gaili 296 (425)
T PRK05476 266 ELGDIFVTAT--------GNK-DVITAEHMEAMKDGAILA 296 (425)
T ss_pred hCCCEEEECC--------CCH-HHHHHHHHhcCCCCCEEE
Confidence 3689998742 122 2333 4567889999887
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.75 E-value=8.1 Score=34.88 Aligned_cols=95 Identities=25% Similarity=0.182 Sum_probs=54.7
Q ss_pred cccCCCCCEEEEEcCCC--cHHHHHHHH-cCCCEEEEEec-hHHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCce
Q 021852 18 NKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 90 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~--G~l~~~~a~-~g~~~v~~iD~-s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~ 90 (306)
...+.+|.+||-.|+.. |.+++.+|+ .|+ .++++-. ++-.+.++ +.|-..-+.+...|+.+-. .....
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 45577899999999544 577888888 566 5555554 44333443 3454323333333332211 23347
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+-.. +. ..+....+.|+++|.++
T Consensus 212 vDvv~D~v------G~----~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 212 VDVVLDTV------GG----DTFAASLAALAPGGRLV 238 (326)
T ss_pred ceEEEECC------CH----HHHHHHHHHhccCCEEE
Confidence 99999632 11 23333457889999987
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.63 E-value=3.2 Score=35.30 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=48.6
Q ss_pred CCCChHHHHHHHHHHHhccc--CCCCCEEEEEcCCCcHHH--HHHHHcCCC-EEEEEech-HHHHHHHHHHHHcCCCCeE
Q 021852 1 MLKDVVRTKSYQNVIYQNKF--LFKDKVVLDVGAGTGILS--LFCAKAGAA-HVYAVECS-QMANMAKQIVEANGFSNVI 74 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~--~~~~~~VLDlG~G~G~l~--~~~a~~g~~-~v~~iD~s-~~~~~a~~~~~~~~~~~~v 74 (306)
||+|..+.. |.+-.....- ..++.+||-+|+|.-..- ..+.+.|+. .|++-+.+ ++...++ . +++
T Consensus 1 ~~~~~~~~~-~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-----~---~~i 71 (223)
T PRK05562 1 MLKDNKEDI-YNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-----Y---GNL 71 (223)
T ss_pred CCcchhhHH-hhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-----C---CCE
Confidence 788877633 3322111111 135789999999985442 234456663 34444666 5544432 1 358
Q ss_pred EEEEceeeeecCCCceeeEEEEc
Q 021852 75 TVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 75 ~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
+++..+.+.-.+ ..+++|++.
T Consensus 72 ~~~~r~~~~~dl--~g~~LViaA 92 (223)
T PRK05562 72 KLIKGNYDKEFI--KDKHLIVIA 92 (223)
T ss_pred EEEeCCCChHHh--CCCcEEEEC
Confidence 888877654433 357888874
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=84.35 E-value=6.6 Score=35.83 Aligned_cols=95 Identities=22% Similarity=0.221 Sum_probs=53.4
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc--ee----eeecCCC
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG--KI----EEIELPV 88 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~----~~~~~~~ 88 (306)
...+.++.+||-.|+|. |.++..+|+ .|+..|++++.+ +..+.+++ .|....+..... +. .++ .+
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~-~~- 251 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEM-TD- 251 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHH-hC-
Confidence 34567889999998754 455555566 677678999866 65555533 233211111111 11 111 23
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhccc-CCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLV-DDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~-p~G~~i 127 (306)
+.+|+++-. .+ . ...+....+.|+ ++|.++
T Consensus 252 ~~~d~vid~-~g----~----~~~~~~~~~~l~~~~G~~v 282 (365)
T cd05279 252 GGVDYAFEV-IG----S----ADTLKQALDATRLGGGTSV 282 (365)
T ss_pred CCCcEEEEC-CC----C----HHHHHHHHHHhccCCCEEE
Confidence 568998852 11 1 123344457788 999987
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.34 E-value=7.9 Score=35.25 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=52.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee------cCCCc
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI------ELPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~ 89 (306)
....++.+||-.|+|. |.++..+|+ .|+.+|++++.+ +..+.+++ .+.. .++..+-.++ ..+..
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~ 255 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGR 255 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCC
Confidence 3446788888876542 444455555 577669999876 55555533 2331 2222221111 12345
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+|+... ... ..+....+.|+++|.++
T Consensus 256 ~~d~vld~v-----g~~----~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 256 GVDVVVEAL-----GKP----ETFKLALDVVRDGGRAV 284 (367)
T ss_pred CCCEEEEeC-----CCH----HHHHHHHHHHhcCCEEE
Confidence 699998532 111 13445568899999987
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=84.31 E-value=4.2 Score=34.29 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-------------------HHHHHHHHHHHHcCCCCeEEEEEcee
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------QMANMAKQIVEANGFSNVITVLKGKI 81 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 81 (306)
+..+|+-+|||. | .++..+++.|..+++.+|.+ .-++.+++++++.+..-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 567899999995 4 55777788899899998865 12344555555444333455555444
Q ss_pred eeecCC--CceeeEEEEc
Q 021852 82 EEIELP--VTKVDIIISE 97 (306)
Q Consensus 82 ~~~~~~--~~~~D~iv~~ 97 (306)
.+...+ -..+|+|+..
T Consensus 107 ~~~~~~~~~~~~DvVI~a 124 (212)
T PRK08644 107 DEDNIEELFKDCDIVVEA 124 (212)
T ss_pred CHHHHHHHHcCCCEEEEC
Confidence 331110 1468999963
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=83.99 E-value=2.8 Score=38.12 Aligned_cols=76 Identities=30% Similarity=0.375 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech----------------------HHHHHHHHHHHHcCCCCeEEEE
Q 021852 22 FKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS----------------------QMANMAKQIVEANGFSNVITVL 77 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s----------------------~~~~~a~~~~~~~~~~~~v~~~ 77 (306)
...++||-+|||. | .++..+++.|..+++.+|.+ .-++.+++.+++.+-.-+++.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3567899999995 4 45677788899999999964 1223344455443322245555
Q ss_pred EceeeeecCC--CceeeEEEEc
Q 021852 78 KGKIEEIELP--VTKVDIIISE 97 (306)
Q Consensus 78 ~~d~~~~~~~--~~~~D~iv~~ 97 (306)
..++..-... -..+|+|+.-
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~ 123 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIIDA 123 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEEc
Confidence 5554321100 2568999974
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=83.90 E-value=4 Score=35.30 Aligned_cols=96 Identities=19% Similarity=0.127 Sum_probs=46.9
Q ss_pred ccCCCCCEEEEEcCCC--c--HHHHHHHH-cC-CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 19 KFLFKDKVVLDVGAGT--G--ILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~--G--~l~~~~a~-~g-~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
..+....+||-+|+|+ | .-+..+.| .+ .+.++-.|+.+.+ . +--..+.+|...+..+ .++|
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-------S-----Da~~~~~~Dc~t~~~~-~k~D 123 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-------S-----DADQSIVGDCRTYMPP-DKFD 123 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEEES-GGGEEES-S-EE
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-------c-----ccCCceeccccccCCC-Cccc
Confidence 4567789999999997 3 22444445 22 2245555554321 1 1224566788877655 9999
Q ss_pred EEEEcccc--------cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMG--------YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~--------~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|++-+ .....++-...+..-+...|+-||.+.
T Consensus 124 lIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva 166 (299)
T PF06460_consen 124 LIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA 166 (299)
T ss_dssp EEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence 99998741 112234445566666778889999875
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=83.69 E-value=3.4 Score=35.16 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--------------------HHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--------------------QMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--------------------~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
...+|+-+|||. | ..+..+++.|.++++.+|.+ .-++.+++++++.+-.-+++.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 467999999995 3 55677788899899988532 2234455555554432346666555
Q ss_pred eeeecCC--CceeeEEEEc
Q 021852 81 IEEIELP--VTKVDIIISE 97 (306)
Q Consensus 81 ~~~~~~~--~~~~D~iv~~ 97 (306)
+....+. -..+|+|+..
T Consensus 100 i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 100 LDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eCHHHHHHHHhCCCEEEEc
Confidence 4221111 1459999974
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.58 E-value=0.15 Score=40.31 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=31.7
Q ss_pred ecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.++++|+|.++-+..++.. .....+++.+.++|||||.+-
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~Lr 83 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLR 83 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEE
Confidence 3467799999999855444432 344567888999999999974
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=83.47 E-value=10 Score=35.33 Aligned_cols=84 Identities=30% Similarity=0.301 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEechH-HHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
...|++|+-+|+|. |......++ .|+ +|+++|.++ -...|+ ..|. .+. +.++. + ...|+|++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~----~~G~----~v~--~leea-l--~~aDVVIta 257 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAA----MDGF----RVM--TMEEA-A--KIGDIFITA 257 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHH----hcCC----EeC--CHHHH-H--hcCCEEEEC
Confidence 46899999999998 555444555 566 799999873 222221 2233 222 22222 1 457998873
Q ss_pred ccccccCCcchHHHHH-HHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVL-YARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l-~~~~~~L~p~G~~i 127 (306)
. +. ..++ ......+|+|++++
T Consensus 258 T--------G~-~~vI~~~~~~~mK~Gaili 279 (406)
T TIGR00936 258 T--------GN-KDVIRGEHFENMKDGAIVA 279 (406)
T ss_pred C--------CC-HHHHHHHHHhcCCCCcEEE
Confidence 2 12 2233 33567889999887
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=83.41 E-value=0.56 Score=34.93 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=25.8
Q ss_pred eeeEEEEcccccc---cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYF---LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~---~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|+|-.+--. -.+..-+..++..+...|+|||.+|
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li 41 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI 41 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE
Confidence 4899998422111 1133456678999999999999998
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=83.22 E-value=8.1 Score=28.60 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHH---cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEEccccccc
Q 021852 32 AGTGILSLFCAK---AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFL 103 (306)
Q Consensus 32 ~G~G~l~~~~a~---~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~~~~~~~~ 103 (306)
||.|.++..+++ .+...|+.+|.+ +.++.+++ .+ +.++.+|..+.. ..-.++|.+++-.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 444556665554 334489999998 66655543 22 578999987654 2346889888742
Q ss_pred CCcchHHHHHHHHhhcccCCeEEE
Q 021852 104 LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 104 ~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
........+-...+-+.|...++
T Consensus 71 -~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 71 -DDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp -SSHHHHHHHHHHHHHHTTTSEEE
T ss_pred -CCHHHHHHHHHHHHHHCCCCeEE
Confidence 12222222333345566776665
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.14 E-value=8.1 Score=33.21 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=46.7
Q ss_pred CCCCCEEEEEcCCCcHH---HHHHHHcCCCEEEEEech-H-HHHHHHHHHHHcCCCCeEEEEEceeeeec---------C
Q 021852 21 LFKDKVVLDVGAGTGIL---SLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE---------L 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l---~~~~a~~g~~~v~~iD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~ 86 (306)
+..+++||-.|+++|+= +..+++.|..+|+.++.+ + .++.+.+.++..+- .++.++.+|+.+.. .
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHH
Confidence 45677899999876532 333344554589998866 4 35554444554432 35888888886533 1
Q ss_pred CCceeeEEEEc
Q 021852 87 PVTKVDIIISE 97 (306)
Q Consensus 87 ~~~~~D~iv~~ 97 (306)
..+..|+++.+
T Consensus 84 ~~g~id~li~~ 94 (253)
T PRK07904 84 AGGDVDVAIVA 94 (253)
T ss_pred hcCCCCEEEEe
Confidence 12479988875
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.93 E-value=6 Score=33.40 Aligned_cols=67 Identities=31% Similarity=0.376 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHH----cCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----------
Q 021852 23 KDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKIEEIE----------- 85 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~----~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 85 (306)
..+.||-.||..|.++..+|+ .|. .|+|+--+ .|.+.+.+. | +.....|+.+-.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~----g----l~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQF----G----LKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhh----C----CeeEEeccCChHHHHHHHHHHhh
Confidence 467899999999988777765 455 89999865 687777442 2 334444443221
Q ss_pred CCCceeeEEEEcc
Q 021852 86 LPVTKVDIIISEW 98 (306)
Q Consensus 86 ~~~~~~D~iv~~~ 98 (306)
.+.++.|+++.+.
T Consensus 77 ~~~Gkld~L~NNA 89 (289)
T KOG1209|consen 77 NPDGKLDLLYNNA 89 (289)
T ss_pred CCCCceEEEEcCC
Confidence 3678999998864
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.85 E-value=17 Score=32.04 Aligned_cols=75 Identities=29% Similarity=0.439 Sum_probs=45.0
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC---
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP--- 87 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~--- 87 (306)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ ...+...+.++..+ .++.++.+|+.+.. +.
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 3457899999987653 2344455666 78888754 23333333444333 35788888886543 11
Q ss_pred --CceeeEEEEcc
Q 021852 88 --VTKVDIIISEW 98 (306)
Q Consensus 88 --~~~~D~iv~~~ 98 (306)
..++|++|.+.
T Consensus 120 ~~~~~iD~lI~~A 132 (290)
T PRK06701 120 RELGRLDILVNNA 132 (290)
T ss_pred HHcCCCCEEEECC
Confidence 13689998754
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=82.49 E-value=6.3 Score=37.40 Aligned_cols=95 Identities=22% Similarity=0.312 Sum_probs=53.9
Q ss_pred HHHHHHhccc-CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 11 YQNVIYQNKF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 11 ~~~ai~~~~~-~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
..++|.+... ...|++|+-+|+|. |......++ .|+ +|+++|.+ .-...+. ..|. .+. ++.+. +
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~----~~G~----~vv--~leEa-l 307 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQAL----MEGY----QVL--TLEDV-V 307 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHH----hcCC----eec--cHHHH-H
Confidence 3455554322 36799999999997 544333344 566 89999987 3222322 2233 122 23332 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...|+|+... +....+.......+|+||+++
T Consensus 308 --~~ADVVI~tT--------Gt~~vI~~e~L~~MK~GAiLi 338 (477)
T PLN02494 308 --SEADIFVTTT--------GNKDIIMVDHMRKMKNNAIVC 338 (477)
T ss_pred --hhCCEEEECC--------CCccchHHHHHhcCCCCCEEE
Confidence 3579998732 111122244557899999997
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.48 E-value=8.4 Score=33.97 Aligned_cols=94 Identities=21% Similarity=0.145 Sum_probs=54.1
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc--------CCC---------CeEEEEEceeeee
Q 021852 25 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN--------GFS---------NVITVLKGKIEEI 84 (306)
Q Consensus 25 ~~VLDlG~G~G--~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~ 84 (306)
.+|.-||+|+- .++..+++.|. +|+.+|.+ +.++.+++.+++. .+. .++++. .+..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 46888999862 44555666665 89999988 6666665543211 111 123322 222221
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-...|+|+.... ........++..+...++++.++.
T Consensus 82 ---~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 ---VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ---hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 146799887532 112245567777777787777653
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.47 E-value=9.6 Score=34.37 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=56.4
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHH-------HcCCC-----CeEEEEEceeeeecCCCc
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVE-------ANGFS-----NVITVLKGKIEEIELPVT 89 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~-------~~~~~-----~~v~~~~~d~~~~~~~~~ 89 (306)
++|--||+|+ ..++..++.+|. .|+..|.+ +.++.+++.++ +.++. .++++.. ++++. -.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---VA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---hc
Confidence 5799999996 355666677776 99999988 66655544332 22221 1233322 22211 14
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+|+-... ........++..+.+.++|+.++-
T Consensus 83 ~aDlViEavp----E~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 83 DADFIQESAP----EREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred CCCEEEECCc----CCHHHHHHHHHHHHHhCCCCeEEE
Confidence 6898886432 222445577788888999987443
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=82.35 E-value=4.2 Score=37.44 Aligned_cols=96 Identities=23% Similarity=0.257 Sum_probs=54.1
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE--ceeee-ec-CCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK--GKIEE-IE-LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~~-~~-~~~~~~ 91 (306)
..+.++.+||-.|+|. |.++..+|+ .|+..|+++|.+ +-.+.|++ .|...-+.... .+..+ +. +..+.+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 4567899999998865 566666666 677789999976 65555533 34421111111 01111 10 112368
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
|+|+-. .+ . +..+....+.+++| |+++
T Consensus 265 d~vid~-~G----~----~~~~~~~l~~l~~g~G~iv 292 (378)
T PLN02827 265 DYSFEC-VG----D----TGIATTALQSCSDGWGLTV 292 (378)
T ss_pred CEEEEC-CC----C----hHHHHHHHHhhccCCCEEE
Confidence 988852 11 1 11233445778898 9886
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=82.27 E-value=5.6 Score=33.11 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--HH------------------HHHHHHHHHHcCCCCeEEEEEce
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--QM------------------ANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
..++||-+|||. | ..+..++..|.++++.+|.+ +. ++.+++.+++.+-.-+++.+...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 467899999986 2 44566677899999999854 21 33445555544432345555544
Q ss_pred eeeec--CCCceeeEEEEc
Q 021852 81 IEEIE--LPVTKVDIIISE 97 (306)
Q Consensus 81 ~~~~~--~~~~~~D~iv~~ 97 (306)
+.+.. + -..+|+|++.
T Consensus 100 ~~~~~~~~-~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEF-FSQFDVVVAT 117 (197)
T ss_pred ccccHHHH-HhCCCEEEEC
Confidence 43221 1 1579999974
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.27 E-value=8.5 Score=33.00 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=48.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++...+.+...+...++.++.+|+.+.. + .
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999987653 3444555676 79999976 555555455544222346888888886543 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+.+|++|.+.
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 24689999864
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=82.26 E-value=5.9 Score=34.28 Aligned_cols=92 Identities=24% Similarity=0.232 Sum_probs=53.5
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....++.+||-.|+|. |..+..+|+ .|..+|++++.+ +..+.+++. +..+.+ +... ... .+...+|+++
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~-~~~~~~d~vl 164 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-ADE-IGGRGADVVI 164 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhh-hcCCCCCEEE
Confidence 4567889999998765 555566666 566559999976 666655542 311111 1110 011 1335689988
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
... .. ...+....+.|+++|.++
T Consensus 165 ~~~-----~~----~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 165 EAS-----GS----PSALETALRLLRDRGRVV 187 (277)
T ss_pred Ecc-----CC----hHHHHHHHHHhcCCcEEE
Confidence 531 11 123444567889999886
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.18 E-value=9 Score=33.95 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=51.3
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....++.+||-.|+|. |..+..+++ .|+ +|++++.+ +..+.+++ .|... +... .+. .+...+|+++
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~-~~~~----~~~-~~~~~~d~vi 219 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVET-VLPD----EAE-SEGGGFDVVV 219 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcE-EeCc----ccc-ccCCCCCEEE
Confidence 4567789999997643 344444455 566 58888876 66666654 34421 1111 111 2346799998
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.. .. ...+....+.|+++|.++
T Consensus 220 d~~-----g~----~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 220 EAT-----GS----PSGLELALRLVRPRGTVV 242 (319)
T ss_pred ECC-----CC----hHHHHHHHHHhhcCCEEE
Confidence 521 11 123344456789999887
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=82.17 E-value=9.7 Score=34.21 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=52.5
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee----eeecCCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI----EEIELPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~~ 91 (306)
..+.++.+||-.|+|. |..+..+|+ .|..+|++++.+ .....+++ .+...-+.....+. ..+ .+...+
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~-~~~~~~ 236 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLEL-TDGRGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHH-hCCCCC
Confidence 3456788888887643 344444555 565689999876 44444443 34321122211111 111 233569
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++... .. ...+....+.|+++|.++
T Consensus 237 d~vld~~--------g~-~~~~~~~~~~l~~~g~~v 263 (345)
T cd08286 237 DVVIEAV--------GI-PATFELCQELVAPGGHIA 263 (345)
T ss_pred CEEEECC--------CC-HHHHHHHHHhccCCcEEE
Confidence 9988532 11 123555668899999987
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.10 E-value=10 Score=33.43 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=54.8
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc----------CC---------CCeEEEEEceee
Q 021852 25 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN----------GF---------SNVITVLKGKIE 82 (306)
Q Consensus 25 ~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~----------~~---------~~~v~~~~~d~~ 82 (306)
.+|.-+|+|. | .++..+++.|. +|+.+|.+ +.++.+++.++.. +. ..++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899996 3 45666677776 89999988 7777665543321 11 0112221 1111
Q ss_pred eecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. -..+|+|+-... ........++..+.+.++|+.+++
T Consensus 82 ~----~~~aDlVieav~----e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAVP----EKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 145798886432 111235677777778888887665
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=81.99 E-value=12 Score=33.13 Aligned_cols=92 Identities=22% Similarity=0.095 Sum_probs=54.2
Q ss_pred cccCCCCCEEEEEcC--CCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCC
Q 021852 18 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPV 88 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~--G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 88 (306)
.....+|.+||-.|+ |.|.++..+|+ .|+ +|++++.+ +-.+.+++ .|.. .++...-.++. ...
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHCC
Confidence 345678999999985 33666776777 566 79998876 65555543 3442 12221111110 122
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+-.. + . ..+....+.|+++|.++
T Consensus 210 ~gvd~vld~~------g--~--~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 210 DGIDCYFDNV------G--G--EFSSTVLSHMNDFGRVA 238 (329)
T ss_pred CCcEEEEECC------C--H--HHHHHHHHhhccCCEEE
Confidence 5699988421 1 1 23345567889999987
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=81.86 E-value=7.1 Score=34.44 Aligned_cols=77 Identities=26% Similarity=0.310 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CCC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 88 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 88 (306)
..+++||-=||.+|+ ++..++++|++.|..+=...-++...+.+++.+-.+++.++.+|+.+.. ..-
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 468899999999984 4666677888544433333444444344444443336899999997764 124
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+.+|++|.|.
T Consensus 90 g~vDvLVNNA 99 (282)
T KOG1205|consen 90 GRVDVLVNNA 99 (282)
T ss_pred CCCCEEEecC
Confidence 6899999974
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=81.85 E-value=2.9 Score=38.49 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 23 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 23 ~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
++.+|+-+|+|. |..+...++ .|+ +|+++|.+ +-++.+.+.. + ..+.....+..++.---..+|+|+....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 456799999985 555555454 677 79999987 5444333221 1 1122111111111100146899997531
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... ....-+-....+.++|+++++
T Consensus 240 ~~g~---~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 240 IPGA---KAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred cCCC---CCCcCcCHHHHhcCCCCCEEE
Confidence 1000 001111133345678998876
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.79 E-value=4.4 Score=36.99 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=32.1
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHH
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~ 63 (306)
..+.++.+||-.|+|. |.++..+|+ .|+++|++++.+ +..+.+++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4567899999998764 555555566 577689999977 66665543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=81.69 E-value=13 Score=33.10 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHH-HcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGT-GILSLFCA-KAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G~l~~~~a-~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..+++|+-+|.|. |......+ ..|+ +|+++|.+ +....+ +..+. +++. ..++.---..+|+|+.-.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~----~~~G~----~~~~--~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARI----TEMGL----SPFH--LSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH----HHcCC----eeec--HHHHHHHhCCCCEEEECC
Confidence 3689999999986 33333333 3676 99999987 433333 23342 2221 111110114689999742
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. . ..+-......++|++.++
T Consensus 219 p-~--------~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 219 P-A--------LVLTKEVLSKMPPEALII 238 (296)
T ss_pred C-h--------hhhhHHHHHcCCCCcEEE
Confidence 1 1 112233446788988877
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.41 E-value=7.5 Score=34.68 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=53.0
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC----CeEEEEEceeeeecCCCceeeEEEEc
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
.+|+-+|+|. |.++..+++.|. .|+.++.+ +.++..++ .+|+. ............ .-+.+.+|+|+.-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCC-cccccccCEEEEE
Confidence 4699999997 567888888876 79999876 44444332 22321 000010000000 0112578988863
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. -.......+..+..++.++..++
T Consensus 78 v------K~~~~~~al~~l~~~l~~~t~vv 101 (305)
T PRK05708 78 C------KAYDAEPAVASLAHRLAPGAELL 101 (305)
T ss_pred C------CHHhHHHHHHHHHhhCCCCCEEE
Confidence 2 11245567777888888888776
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=81.24 E-value=5.1 Score=36.59 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=54.0
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc--eeee-e-cCCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG--KIEE-I-ELPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~~~-~-~~~~~~~ 91 (306)
..+.++.+||-.|+|. |.++..+|+ .|+.+|++++.+ +-.+.+++ .|...-+..... +..+ + .+....+
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCC
Confidence 4567899999998764 555666666 677689999987 66665543 343211111110 0111 0 0122368
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
|+|+-. .+ . ...+....+.|+++ |+++
T Consensus 258 d~vid~-~g----~----~~~~~~a~~~l~~~~G~~v 285 (368)
T cd08300 258 DYTFEC-IG----N----VKVMRAALEACHKGWGTSV 285 (368)
T ss_pred cEEEEC-CC----C----hHHHHHHHHhhccCCCeEE
Confidence 998852 11 1 12344445788886 8876
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.20 E-value=6 Score=35.41 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=50.2
Q ss_pred CCEEEEEcCCC--cHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce-------eeeecCCCceeeEE
Q 021852 24 DKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK-------IEEIELPVTKVDII 94 (306)
Q Consensus 24 ~~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~~~~~~~~~D~i 94 (306)
..+|+-+|+|. |.++..+++.|. .|+.+..++ .+ .+..+++ .+.-..++ +....-....+|+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~-~~----~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD-YE----AVRENGL--QVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC-HH----HHHhCCe--EEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 35799999996 456777777775 777777653 11 1334443 11111111 11110012578988
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.-.-. .....++..+..++++++.++
T Consensus 77 ilavK~------~~~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 77 LVGLKT------TANALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred EEEecC------CChHhHHHHHhhhcCCCCEEE
Confidence 864211 233556667777888888776
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=81.11 E-value=3.4 Score=37.10 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=52.7
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce---eeeec--CCCce
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK---IEEIE--LPVTK 90 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~--~~~~~ 90 (306)
....++.+||..|+|. |..+..+|+ .|...|++++.+ +..+.+++ .+.. .++... ...+. .+...
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEecCccccHHHHHHHhCCCC
Confidence 4466888999998654 555555566 566559999876 55554432 3331 222211 11111 23345
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++... +. ...+....+.|+++|.++
T Consensus 228 ~d~vld~~------g~---~~~~~~~~~~l~~~G~~v 255 (343)
T cd08236 228 ADLVIEAA------GS---PATIEQALALARPGGKVV 255 (343)
T ss_pred CCEEEECC------CC---HHHHHHHHHHhhcCCEEE
Confidence 99998531 11 123445567889999986
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=80.71 E-value=3.2 Score=32.17 Aligned_cols=72 Identities=26% Similarity=0.339 Sum_probs=42.8
Q ss_pred CCCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
..++++||-+|+|- | .....++..|+++|+.+.-+ +-++...+.+. + ..++++. +.++.--...+|+|++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~--~--~~~~~~~--~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG--G--VNIEAIP--LEDLEEALQEADIVINA 82 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT--G--CSEEEEE--GGGHCHHHHTESEEEE-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC--c--cccceee--HHHHHHHHhhCCeEEEe
Confidence 45789999999985 3 23444455789899999977 44333333331 1 2355553 33332112579999985
Q ss_pred c
Q 021852 98 W 98 (306)
Q Consensus 98 ~ 98 (306)
.
T Consensus 83 T 83 (135)
T PF01488_consen 83 T 83 (135)
T ss_dssp S
T ss_pred c
Confidence 3
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.52 E-value=1.4 Score=41.42 Aligned_cols=104 Identities=17% Similarity=0.066 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-------CCCceeeE
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-------LPVTKVDI 93 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~~D~ 93 (306)
.+..+|-+|-|.|.+..++.. .+..+++|+|++ +|++.|++++..-.- .+..+.-.|.-+.. -.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 346788899999999887765 566799999999 899999887632211 11222222221110 13468999
Q ss_pred EEEccc--c-cccCCc---chHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWM--G-YFLLFE---NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~--~-~~~~~~---~~~~~~l~~~~~~L~p~G~~i 127 (306)
+..+.= + +.+.-. -.-+.++......|.|.|.++
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~ 413 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFI 413 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEE
Confidence 998531 1 111100 022456777788999999986
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.22 E-value=5.5 Score=36.34 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=53.1
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce---eeeec-CCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK---IEEIE-LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~-~~~~~~ 91 (306)
..+.++.+||-.|+|. |.++..+|+ .|+.+|++++.+ +-.+.+++ .|...-+.....+ .+.+. +....+
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCC
Confidence 4567899999998764 555555566 677789999977 65555543 3432111111100 01010 112468
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
|+|+-.. + . ...+....+.++++ |.++
T Consensus 256 d~vid~~-g----~----~~~~~~~~~~l~~~~G~~v 283 (365)
T cd08277 256 DYSFECT-G----N----ADLMNEALESTKLGWGVSV 283 (365)
T ss_pred CEEEECC-C----C----hHHHHHHHHhcccCCCEEE
Confidence 9988421 1 1 12344455678775 8876
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 306 | ||||
| 1or8_A | 340 | Structure Of The Predominant Protein Arginine Methy | 1e-107 | ||
| 1ori_A | 343 | Structure Of The Predominant Protein Arginine Methy | 1e-107 | ||
| 3q7e_A | 349 | Crystal Structure Of Rat Protein Arginine Methyltra | 1e-106 | ||
| 1orh_A | 353 | Structure Of The Predominant Protein Arginine Methy | 1e-106 | ||
| 1g6q_1 | 328 | Crystal Structure Of Yeast Arginine Methyltransfera | 3e-87 | ||
| 1f3l_A | 321 | Crystal Structure Of The Conserved Core Of Protein | 2e-77 | ||
| 2fyt_A | 340 | Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev | 2e-77 | ||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 1e-56 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 1e-45 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 1e-45 | ||
| 4ikp_A | 341 | Crystal Structure Of Coactivator-associated Arginin | 2e-45 | ||
| 2v74_B | 346 | Crystal Structure Of Coactivator-Associated Arginin | 2e-45 | ||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 2e-45 | ||
| 3r0q_C | 376 | A Uniquely Open Conformation Revealed In The Crysta | 2e-44 | ||
| 4gqb_A | 637 | Crystal Structure Of The Human Prmt5:mep50 Complex | 7e-06 | ||
| 4g56_A | 657 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 1e-05 | ||
| 3uj7_A | 266 | Phosphoethanolamine Methyltransferase From Plasmodi | 5e-04 | ||
| 3ujd_A | 266 | Phosphoethanolamine Methyltransferase Mutant (Y19f) | 5e-04 | ||
| 3ujc_A | 266 | Phosphoethanolamine Methyltransferase Mutant (H132a | 8e-04 |
| >pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340 | Back alignment and structure |
|
| >pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343 | Back alignment and structure |
|
| >pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349 | Back alignment and structure |
|
| >pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353 | Back alignment and structure |
|
| >pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328 | Back alignment and structure |
|
| >pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321 | Back alignment and structure |
|
| >pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340 | Back alignment and structure |
|
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
| >pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341 | Back alignment and structure |
|
| >pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346 | Back alignment and structure |
|
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376 | Back alignment and structure |
|
| >pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 637 | Back alignment and structure |
|
| >pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 657 | Back alignment and structure |
|
| >pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 306 | |||
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 1e-136 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 1e-129 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 1e-129 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 1e-118 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 1e-117 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 1e-108 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 4e-58 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 7e-31 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 1e-19 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 3e-17 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 6e-15 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 2e-13 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 2e-12 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 7e-12 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 3e-11 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 3e-11 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 3e-10 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 5e-10 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 6e-09 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 1e-08 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 1e-08 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 2e-08 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 6e-08 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 8e-08 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 8e-08 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 1e-07 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 1e-07 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 2e-07 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 2e-07 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 2e-07 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 2e-07 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-07 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 3e-07 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 3e-07 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 3e-07 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 4e-07 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 4e-07 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 5e-07 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 8e-07 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 1e-06 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 1e-06 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 1e-06 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 2e-06 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 2e-06 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 2e-06 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 2e-06 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 2e-06 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 3e-06 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 3e-06 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 3e-06 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 3e-06 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 4e-06 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 4e-06 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 4e-06 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 5e-06 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 5e-06 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 5e-06 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 6e-06 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 7e-06 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 7e-06 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 8e-06 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-05 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 1e-05 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 1e-05 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 1e-05 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 1e-05 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 2e-05 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 2e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 2e-05 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 2e-05 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 2e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 3e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 3e-05 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 3e-05 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 3e-05 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 3e-05 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 5e-05 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 6e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 6e-05 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 8e-05 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 8e-05 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 9e-05 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 1e-04 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 1e-04 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 1e-04 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 2e-04 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 2e-04 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 2e-04 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 2e-04 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 2e-04 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 3e-04 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 3e-04 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 3e-04 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 4e-04 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 4e-04 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 4e-04 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 5e-04 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 5e-04 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 6e-04 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 7e-04 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 8e-04 |
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 389 bits (1001), Expect = e-136
Identities = 178/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
+LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 44 LLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 103
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 104 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL 163
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 164 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 223
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 224 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 283
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 284 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 343
Query: 301 QYYKMR 306
Y+MR
Sbjct: 344 TDYRMR 349
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 370 bits (952), Expect = e-129
Identities = 153/312 (49%), Positives = 211/312 (67%), Gaps = 7/312 (2%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
ML+D VRT SY+N I QNK LFKDK+VLDVG GTGILS+F AK GA HV V+ S + M
Sbjct: 16 MLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEM 75
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK++VE NGFS+ IT+L+GK+E++ LP KVDIIISEWMGYFLL+E+M++TVLYARD +L
Sbjct: 76 AKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYL 135
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V+ G++ PDK S++L +ED++YKD+K+ +W +VYGFD S + EP+VDTV++N +
Sbjct: 136 VEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNV 195
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF--TKCHKLMGFST 238
T L D++ + D +F + FKL A+R D I+ +V +FD+ F K + + FST
Sbjct: 196 NTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFST 255
Query: 239 GPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ-----GR 293
GP + THWKQT+ Y D L G+ I G L +PN+KN RD++I + Y + G
Sbjct: 256 GPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGN 315
Query: 294 HSAISRIQYYKM 305
+ Y M
Sbjct: 316 SRSRKNEGSYLM 327
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 371 bits (953), Expect = e-129
Identities = 140/294 (47%), Positives = 192/294 (65%), Gaps = 1/294 (0%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD +RT+SY++ IYQN +FKDKVVLDVG GTGILS+F AKAGA V V+ S++
Sbjct: 42 MLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ 101
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A I+ N + IT++KGKIEE+ LPV KVD+IISEWMGYFLLFE+ML++VLYA++K+L
Sbjct: 102 AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYL 161
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
G V PD ++ L A+ D D+I FW++VYGF MSC+KK + E +V+ +D +
Sbjct: 162 AKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTL 221
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTK-CHKLMGFSTG 239
++ +K +D D F++ F L R A+ YFD+ F K CH + FSTG
Sbjct: 222 ISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTG 281
Query: 240 PKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR 293
P+S THWKQTV LE ++ GEA+ G +TV NKK+PR + + L + +
Sbjct: 282 PQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNNSTQ 335
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 343 bits (880), Expect = e-118
Identities = 111/318 (34%), Positives = 167/318 (52%), Gaps = 16/318 (5%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
M++D VRT +YQ I QN FKDK+VLDVG G+GILS F A+AGA +YAVE S MA
Sbjct: 28 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH 87
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A+ +V++N ++ I V+ GK+EE+ LP +VDIIISE MGY L E ML + L+A+ K+L
Sbjct: 88 AEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYL 145
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDD---KIEFW--NNVYGFDMSCIKKQAMME----PL 171
G + P ++L D + + K FW + +G D+S ++ A+ E P+
Sbjct: 146 KPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPV 205
Query: 172 VDTVDQNQIVTNCQLLKTMDISKMGPGD-ASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 230
VDT D ++ T++ + GD PFK + +H L +FDV F
Sbjct: 206 VDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGS 264
Query: 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 290
+ ST P THW Q + L G+ +SG+ + NK+ D+ I+ +
Sbjct: 265 IMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQ 324
Query: 291 QGRHSAIS---RIQYYKM 305
G S+ + +++
Sbjct: 325 TGSKSSNLLDLKNPFFRY 342
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 345 bits (885), Expect = e-117
Identities = 111/318 (34%), Positives = 167/318 (52%), Gaps = 16/318 (5%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
M++D VRT +YQ I QN FKDK+VLDVG G+GILS F A+AGA +YAVE S MA
Sbjct: 136 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH 195
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A+ +V++N ++ I V+ GK+EE+ LP +VDIIISE MGY L E ML + L+A+ K+L
Sbjct: 196 AEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYL 253
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDD---KIEFW--NNVYGFDMSCIKKQAMME----PL 171
G + P ++L D + + K FW + +G D+S ++ A+ E P+
Sbjct: 254 KPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPV 313
Query: 172 VDTVDQNQIVTNCQLLKTMDISKMGPGD-ASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 230
VDT D ++ T++ + GD PFK + +H L +FDV F
Sbjct: 314 VDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGS 372
Query: 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 290
+ ST P THW Q + L G+ +SG+ + NK+ D+ I+ +
Sbjct: 373 IMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQ 432
Query: 291 QGRHSAIS---RIQYYKM 305
G S+ + +++
Sbjct: 433 TGSKSSNLLDLKNPFFRY 450
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 318 bits (816), Expect = e-108
Identities = 102/335 (30%), Positives = 169/335 (50%), Gaps = 30/335 (8%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
ML D VR +Y N ++QNK F+ K VLDVG G+GIL+++ A+AGA VYAVE ++MA+
Sbjct: 41 MLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADH 100
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A+ +V+AN +++ V++G +E+I LP KVD+IISEWMGYFLL E+M ++V+ ARD+WL
Sbjct: 101 ARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWL 159
Query: 121 VDDGIVLPDKASLYLTAIEDAEYK------DDKIEFWNNV-------YGFDMSCIKKQAM 167
G++ P A ++L I+ D + W+N YG DM + K
Sbjct: 160 KPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFA 219
Query: 168 ME--------PLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKL--VAQRNDYIH 217
E + + ++ QI+ ++K MD + + + +
Sbjct: 220 EEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLC 279
Query: 218 ALVAYFDVTFT-----KCHKLMGFSTGPKS-RATHWKQTVLYLEDVLTICEGEAISGSLT 271
+FDV F+ + + +T P THW Q V + + + + EG+ ++ L
Sbjct: 280 GFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLL 339
Query: 272 VAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 306
++ +K+N R ++I L ++
Sbjct: 340 MSRSKENHRLMEIELNCEIKEASGNPKESFKKTYF 374
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 4e-58
Identities = 51/319 (15%), Positives = 95/319 (29%), Gaps = 53/319 (16%)
Query: 1 MLKDVVRTKSYQNVIYQ-----NKFLFKDKVVLDVGAGTGILSLFCAKAGA--------- 46
+D ++ Y + K V+ +G G G + K+
Sbjct: 382 FEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQG 441
Query: 47 -----AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT-----KVDIIIS 96
+Y VE + A + + + + +T+++ + + + DII+S
Sbjct: 442 QESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVS 501
Query: 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED----AEYKDDKIEFWN 152
E +G F E + L +L I +P K + Y+ I K I + +
Sbjct: 502 ELLGSFGDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQSIPYLS 560
Query: 153 NVYGFDMSCIKKQAMMEPL------------------VDTVDQNQIVTNCQLLKTMDISK 194
+ E V + + + T +
Sbjct: 561 RAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVFTFEHPN 620
Query: 195 MGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATH---WKQTV 251
+ + V RN + YFD+ K S P + W V
Sbjct: 621 FMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYKTV---MLSIEPSTHTPGMVSWFPAV 677
Query: 252 LYLEDVLTICEGEAISGSL 270
+ L D L + EG+ IS +
Sbjct: 678 IPLRDQLRVGEGDRISLKI 696
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 7e-31
Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 10/157 (6%)
Query: 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN 72
+ L + ++ D+G GTG ++ A V ++ ++ + +G N
Sbjct: 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96
Query: 73 VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 132
+T + G ++++ ++D+I SE Y + FE LN K+L G + + S
Sbjct: 97 RVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLN----EWRKYLKKGGYLAVSECS 152
Query: 133 LYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMME 169
+ E + +FW + Y + + A +
Sbjct: 153 WF-----TDERPAEINDFWMDAYPEIDTIPNQVAKIH 184
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 1e-19
Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 13/156 (8%)
Query: 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK 80
F K VLD+G G G ++ A+ GA V ++ S +M AK+ S V+ +
Sbjct: 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKR----KTTSPVVCYEQKA 98
Query: 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVLPDKASLYLTAIE 139
IE+I + ++++S L + + + L G + + ++
Sbjct: 99 IEDIAIEPDAYNVVLSSLA---LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGR 155
Query: 140 DAEYKDD---KIEFWNNVYGFDMSCIKKQAMMEPLV 172
Y D+ K+ + + Y F+ S + E +
Sbjct: 156 QDWYTDETGNKLHWPVDRY-FNESMRTSHFLGEDVQ 190
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 3e-17
Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 10/156 (6%)
Query: 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV 73
+ L D + D+G GTG +LF A + ++ + + ++
Sbjct: 38 VSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADR 97
Query: 74 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 133
+ + G ++ + ++D+I SE Y + FE +N K+L G + +
Sbjct: 98 VKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWS----KYLKKGGFIA-----V 148
Query: 134 YLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMME 169
+ +E + +FW + Y ME
Sbjct: 149 SEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKME 184
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 6e-15
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 76
F+ + ++LDVG+ L + + G A E + A + VEA+G I V
Sbjct: 11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQV 70
Query: 77 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
+V +I MG L + + K + ++L
Sbjct: 71 RLANGLAAFEETDQVSVITIAGMGGRL----IARILEEGLGKLANVERLIL 117
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 2e-13
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 76
++ K++ + D+G+ L F K A+ A E A++ V ++G + I V
Sbjct: 17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDV 76
Query: 77 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
KG + +D I+ MG L + + K ++L
Sbjct: 77 RKGNGLAVIEKKDAIDTIVIAGMGGTL----IRTILEEGAAKLAGVTKLIL 123
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-12
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 76
++ K +LDVG+ L +F + G A E A + V +G ++ I V
Sbjct: 17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDV 76
Query: 77 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
+D I MG L + + + DK +VL
Sbjct: 77 RLANGLSAFEEADNIDTITICGMGGRL----IADILNNDIDKLQHVKTLVL 123
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 7e-12
Identities = 15/134 (11%), Positives = 44/134 (32%), Gaps = 4/134 (2%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVIT 75
+ L VV V G L + + ++ + A ++ + + IT
Sbjct: 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQIT 173
Query: 76 VLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 135
+ + +++ D++ S + + + + + + L G ++ +
Sbjct: 174 LHRQDAWKLDTREG-YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPP 232
Query: 136 TAIEDAEYKDDKIE 149
D+ + I+
Sbjct: 233 ALSPDSPWDMQAID 246
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI- 84
++D+ +G GI+ L + A + VE ++A+MAK+ V N + I +++ +++I
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112
Query: 85 -ELPVTKVDIIIS 96
+P + DI+
Sbjct: 113 DLIPKERADIVTC 125
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 3e-11
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK 80
+D+G+G G LS+ AK + A++ S M +A + + ++ I +++G
Sbjct: 42 ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101
Query: 81 IEEIELPVTKVDIIISEWMGYFL 103
+ I + D+I+S +F
Sbjct: 102 VHNIPIEDNYADLIVSRGSVFFW 124
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 77
+ + K V DVG G+GIL++ K GA V A + S + A++ NG ++
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQK 115
Query: 78 KGKIEEIELPVTKVDIII 95
+ +++ K D+I+
Sbjct: 116 TSLLADVD---GKFDLIV 130
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 5e-10
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 81
++D+G G G + + GA++V ++ S+ M A+ G IT + +
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG----ITYERADL 98
Query: 82 EEIELPVTKVDIIIS 96
+++ LP D+ S
Sbjct: 99 DKLHLPQDSFDLAYS 113
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 6e-09
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 23 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 79
+ VLDVG G G + +K VYA++ +M N A + V G NV +
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLK-S 95
Query: 80 KIEEIELPVTKVDIIIS 96
+ +I LP VD I
Sbjct: 96 EENKIPLPDNTVDFIFM 112
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-08
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 79
L KD VV+DVG G+G +++ AK VYA++ A + KQ + N ++KG
Sbjct: 33 LNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNC-QIIKG 90
Query: 80 KIEEIELPVTKVDIII 95
+ E++ L + +
Sbjct: 91 RAEDV-LDKLEFNKAF 105
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 54.2 bits (129), Expect = 1e-08
Identities = 17/145 (11%), Positives = 49/145 (33%), Gaps = 4/145 (2%)
Query: 21 LFKDKVVLDVGAGTGILSLFCA-KAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK 78
F+ + VLD+G G L+L A K G + + ++ ++ + A+Q + + +
Sbjct: 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQ 103
Query: 79 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLT-- 136
+ + + + + + + D V P+
Sbjct: 104 TLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNY 163
Query: 137 AIEDAEYKDDKIEFWNNVYGFDMSC 161
++ + + + ++ V ++
Sbjct: 164 VLDRDDLVEAQTPEYDVVLCLSLTK 188
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-08
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 27 VLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 84
VL+ G G G ++ AK A + +++ S A++ E NG NV L+ I +
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNV-KFLQANIFSL 99
Query: 85 ELPVTKVDIIISEWMGYFL 103
+ D I ++ L
Sbjct: 100 PFEDSSFDHIFVCFVLEHL 118
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-08
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 81
K V++D G G G + + +Y ++ + K+ ++ +
Sbjct: 17 KKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEKFDS---------VITLS 66
Query: 82 EEIELPVTKVDIIIS 96
+ E+P VD I+
Sbjct: 67 DPKEIPDNSVDFILF 81
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 8e-08
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 84
LD GAG G ++ A +E + +M ++ V + +E
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLLE--PVKHMLEEAKRELAGMPVGKFILASMETA 152
Query: 85 ELPVTKVDIIISEWMGYFL 103
LP D+I+ +W +L
Sbjct: 153 TLPPNTYDLIVIQWTAIYL 171
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 8e-08
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 79
FK VV+D G G ++ A G V A++ + +A+ E G ++ I + G
Sbjct: 76 SFKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICG 134
Query: 80 KIEEIELPVTKVDIII 95
+ K D++
Sbjct: 135 DFLLLA-SFLKADVVF 149
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 1e-07
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 18 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL 77
N + V+D G G GIL+ GA V A + A I A + +
Sbjct: 46 NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDA-----IETAKRNCGGVNFM 100
Query: 78 KGKIEEIELPVTKVDIIIS 96
+ EI K D I
Sbjct: 101 VADVSEISG---KYDTWIM 116
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-07
Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 24/156 (15%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 79
L + LD+GAG G + F + + + + ++ G ++ ITV G
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG 139
Query: 80 KIEEIELPVTKVDIIISEWM---------------------GYFLLFENMLNTVLYARDK 118
EI D I S+ G + + M +
Sbjct: 140 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI 199
Query: 119 WLVDDGIVLPDKASL--YLTAIEDAEYKDDKIEFWN 152
+ D I L D SL Y + ++ +
Sbjct: 200 QPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP 235
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 13/145 (8%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 77
+ LD+ GTG L+ + +AV+ SQ M + A+ + G +
Sbjct: 33 ENNLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLK--PRLA 89
Query: 78 KGKIEEIELPVTKVDIIISEW--MGYFLLFENMLNTVLYARDKWLVDDGIVL-----PDK 130
I + + K D+I Y + +++ L + G+ + K
Sbjct: 90 CQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVS-NHLKEGGVFIFDINSYYK 147
Query: 131 ASLYLTAIEDAEYKDDKIEFWNNVY 155
S L + D+ +W N +
Sbjct: 148 LSQVLGNNDFNYDDDEVFYYWENQF 172
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 82
K V+ D+GAGTG S+ A G VYAVE S M +Q A V G E
Sbjct: 34 KGSVIADIGAGTGGYSVALANQG-LFVYAVEPS--IVMRQQ---AVVHPQV-EWFTGYAE 86
Query: 83 EIELPVTKVDIIIS 96
+ LP VD +IS
Sbjct: 87 NLALPDKSVDGVIS 100
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 79
K+ V +DVG GTG ++L A VYA++ + A + + ++ +G + +T+++G
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG 89
Query: 80 KIEEIELPVTKVDIII 95
E + +DI +
Sbjct: 90 DAPEALCKIPDIDIAV 105
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 23 KDKVVLDVGAGTGILSLFCA-KAGAAHVYAVECS-QMANMAKQIVEAN---GFSNVITVL 77
+ + D+GAG G + A + A V E S +MA A++ +E FS I VL
Sbjct: 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95
Query: 78 KGKIEEIE-------LPVTKVDIIIS 96
+ + LP +I
Sbjct: 96 EADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-07
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 81
DK VLD GAG + L Y +E S A+ N F + + KG I
Sbjct: 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LNISKGDI 80
Query: 82 EEIELPVTKVDIIISEWMGYFLLFEN 107
++ + + S + + +
Sbjct: 81 RKLPFKDESMSFVYSYGTIFHMRKND 106
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-07
Identities = 33/163 (20%), Positives = 50/163 (30%), Gaps = 29/163 (17%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 81
+ VLD+GAG G +L + V+ ++ M +A + G NV G
Sbjct: 21 AEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQ-GTA 78
Query: 82 EEIELPVTKVDIIIS---------------EWM------GYFLLFENM-----LNTVLYA 115
E + P DII E G FLL ++ +
Sbjct: 79 ESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN 138
Query: 116 RDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFD 158
L D V S + + I+ WN +D
Sbjct: 139 HLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQYD 181
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-07
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 77
K++ K VLD+ G G S G V V+ S M A++ ++ + + +
Sbjct: 34 KYMKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESN--VEFI 90
Query: 78 KGKIEEIELPVTKVDIIIS 96
G ++ D +I
Sbjct: 91 VGDARKLSFEDKTFDYVIF 109
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-07
Identities = 20/145 (13%), Positives = 49/145 (33%), Gaps = 19/145 (13%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 79
F+ +L++G+ G + + + VE + + A+ ++ IT +
Sbjct: 40 FFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKDG-----ITYIHS 93
Query: 80 KIEEIELPVTKVDIIISEWMGYFLLFE---NMLNTVLYARDKWLVDDGIVL---PDKASL 133
+ E+ +LP + D I+ + E + + + D WL + G + P+ ++
Sbjct: 94 RFEDAQLP-RRYDNIVL-----THVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAV 147
Query: 134 YLTAIEDAEYKDDKIEFWNNVYGFD 158
+
Sbjct: 148 SRQIAVKMGIISHNSAVTEAEFAHG 172
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 4e-07
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 26 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 84
V L++G GTG ++L G A++ M + +Q + + V++ I
Sbjct: 42 VFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRK--VQVVQADARAI 98
Query: 85 ELPVTKVDIIIS 96
LP V +I
Sbjct: 99 PLPDESVHGVIV 110
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 4e-07
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 27/142 (19%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 85
VLDVG G G ++ A A V + S+ N A A G +N +T ++
Sbjct: 65 VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP 124
Query: 86 LPVTKVDIIISEWM---------------------GYFLLFENMLNTVLYARDKWLVD-- 122
D + + G + + +L + K VD
Sbjct: 125 FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAF 184
Query: 123 -DGIVLPDKASL--YLTAIEDA 141
G + + Y + + A
Sbjct: 185 RAGGGVLSLGGIDEYESDVRQA 206
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNV-ITVLKGK 80
KD +LD+G G G++ + A + ++ A +AK+ ++ N N I V+
Sbjct: 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD 110
Query: 81 IEEIELPVTKVDIIIS 96
+ E + K + II+
Sbjct: 111 LYE-NVKDRKYNKIIT 125
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 8e-07
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85
VL+ G GTG L+ AG VY +E S +M +AK+ + ++ +G E
Sbjct: 49 VLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLPKE-----FSITEGDFLSFE 102
Query: 86 LPVTKVDIIIS 96
+P T +D I+S
Sbjct: 103 VP-TSIDTIVS 112
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 23 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG 79
+ V+D G G + F A V+ + + + + + +T++K
Sbjct: 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81
Query: 80 KIEEIELPV-TKVDIIIS 96
+ ++ + V ++
Sbjct: 82 GHQNMDKYIDCPVKAVMF 99
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI 81
+ +V+D G G + F A + VYA + + A Q + G N +L G
Sbjct: 22 DESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHE 80
Query: 82 EEIELPVTKVDIII 95
+ I
Sbjct: 81 NLDHYVREPIRAAI 94
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-06
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85
LD+G G G SL+ A G V A + + ++I N + + +
Sbjct: 36 TLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLT 93
Query: 86 LPVTKVDIIISEWMGYFL 103
+ D I+S + FL
Sbjct: 94 FD-RQYDFILSTVVLMFL 110
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 77
+ L VLD+G G+G+L++ K G V+ M A+ + NG L
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVRP--RFL 172
Query: 78 KGKIEEIELPVTKVDIII 95
+G +E LP D+++
Sbjct: 173 EGSLEA-ALPFGPFDLLV 189
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 32/150 (21%)
Query: 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI---VEANGFSNVITVLK 78
F VLD+ AG+G L++ G + VE ++ A I + N T+LK
Sbjct: 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKA--QAIIQDNIIMTKAENRFTLLK 87
Query: 79 GKIEE-IELPVTKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIV---- 126
+ E I+ + D++ FL + + A L + +V
Sbjct: 88 MEAERAIDCLTGRFDLV-------FLDPPYAKETIVATIEAL--AAKNLLSEQVMVVCET 138
Query: 127 -----LPDKASLYLTAIEDAEYKDDKIEFW 151
LP + + L ++ Y K+ +
Sbjct: 139 DKTVLLPKEIA-TLGIWKEKIYGISKVTVY 167
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 2e-06
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEA--NGFSNVITVL 77
+ K+++DVG G G +L A+ + + S M A+ I E + + N ++
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN-VSFK 94
Query: 78 KGKIEEIE------LPVTKVDIIIS 96
++ + + K+D+I +
Sbjct: 95 ISSSDDFKFLGADSVDKQKIDMITA 119
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85
L++G G + A + ++ + A Q +S++ + I +
Sbjct: 55 GLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQ--RTKRWSHI-SWAATDILQ-F 109
Query: 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL----PDKASLYLTAIEDA 141
D+I+ + Y+L + T + K L G ++ D + A
Sbjct: 110 STAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGA 169
Query: 142 EY 143
E
Sbjct: 170 ET 171
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-06
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 80
+ KVV D+GAGTG+LS GA V VE + A ++ + + V G
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD 105
Query: 81 IEEIELPVTKVDIIIS 96
+ E ++VDI+I
Sbjct: 106 VSEFN---SRVDIVIM 118
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 3e-06
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI-EEI 84
V D+G G+G + + AK A V+A + S A +A++ E +G S+ V KG+ E
Sbjct: 127 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF 186
Query: 85 ELPVTKVDIIIS 96
+ +++I+S
Sbjct: 187 KEKFASIEMILS 198
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS-------- 71
++K VL+ + TG ++ G + V +V+ SQ A ++A+Q VE N
Sbjct: 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277
Query: 72 -NVITVLKGKIEEIELPVTKVDIII 95
+V +L+ + E K D+I+
Sbjct: 278 DDVFKLLRTYRDRGE----KFDVIV 298
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85
+LDVG+GTG + A G + +E + ++ +A+Q + +T G I ++
Sbjct: 45 ILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTHPS------VTFHHGTITDLS 97
Query: 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
+ +++ W + L L A + D G +L
Sbjct: 98 DSPKRWAGLLA-WYSLIHMGPGELPDALVALRMAVEDGGGLL 138
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 9/149 (6%)
Query: 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV 73
I++ + + VLD+ GTGI +L A+ G V ++ + M +A++ +
Sbjct: 33 IFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLK-- 89
Query: 74 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 133
I L+G + EI + D + + E L + + L G+ + D
Sbjct: 90 IEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW 148
Query: 134 YLTAIED----AEYKDDKIEFWNNVYGFD 158
+ + E K ++ + +
Sbjct: 149 FYGGRDGPVVWNEQKGEEKLVIMDWREVE 177
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 85
+LD+G+G+G + A+ ++ S AK+ E G S + +
Sbjct: 40 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY- 98
Query: 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARD--KWLVDDGIVL 127
+ K D+ + L GI+L
Sbjct: 99 VANEKCDVAACVGA-----TWIAGGFAGAEELLAQSLKPGGIML 137
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 76
++ +LD+GAGTG+LS F + A V+ S+ M +AK N +
Sbjct: 40 SVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLK---VKY 96
Query: 77 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
++ + + K D+++S + L E+ + L + GI +
Sbjct: 97 IEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSY-SILKESGIFI 145
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-06
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVIT 75
L + +L +G G LS G +V +V+ S + + +
Sbjct: 35 LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSS--VVVAAMQACYAHVPQLR 92
Query: 76 VLKGKIEEIELPVTKVDIIIS 96
+ +++ P D+++
Sbjct: 93 WETMDVRKLDFPSASFDVVLE 113
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 14/144 (9%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 81
K + D+G GTG +L A V V+ S+ M +A++ + +
Sbjct: 33 PGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNRH--VDFWVQDM 88
Query: 82 EEIELPVTKVDIIISEW--MGYFLLFENMLNTVLYARDKWLVDDGIVL-----PDKASLY 134
E+ELP VD I + Y ++ T A + L D G +L P K
Sbjct: 89 RELELPEP-VDAITILCDSLNYLQTEADVKQTFDSAA-RLLTDGGKLLFDVHSPYKMETL 146
Query: 135 LTAIEDAEYKDDKIEFWNNVYGFD 158
A + + W G +
Sbjct: 147 FNGKTYATHAEQSSYIWFADPGEE 170
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 5e-06
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 77
K++ VLDV TG ++ A AGA V ++ S A AK+ + NG + + +
Sbjct: 213 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 272
Query: 78 KG 79
G
Sbjct: 273 VG 274
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 81
++ VLDV G G ++ A V A + ++ + +A+ +E NG V V G
Sbjct: 37 GNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ-GDA 94
Query: 82 EEIELPVTKVDIIIS 96
E++ + I+
Sbjct: 95 EQMPFTDERFHIVTC 109
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 6e-06
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 80
+V L++G G + A+ V A E + A++ +E N + + G
Sbjct: 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114
Query: 81 IEEIELPVTKVDIIIS 96
I + + D+I S
Sbjct: 115 IIK-GVVEGTFDVIFS 129
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 7e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYA 51
+ L K V ++GAG G++S+ AGA V A
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVA 107
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 7e-06
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 27 VLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 83
++D G G G L L + ++ + + A+++ + L+G E
Sbjct: 26 IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD--SEFLEGDATE 83
Query: 84 IELPVTKVDIIISEW 98
IEL K DI I
Sbjct: 84 IELN-DKYDIAICHA 97
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 8e-06
Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 8/170 (4%)
Query: 18 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 76
+ + VLD+G G G L +AG Y V+ ++ N A+ +
Sbjct: 59 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFF 118
Query: 77 LKGKIEEIEL-PVTKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 134
+ + D+I S++ Y L+ + L G + S
Sbjct: 119 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 178
Query: 135 LTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC 184
+ + + N+ Y ++ ++ M V NC
Sbjct: 179 VIL-----ERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNC 223
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVI 74
+ +++ K+ VLDVG G G + ++ G V+ S M K+ E +
Sbjct: 46 FFEQYVKKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERGEGPD----L 100
Query: 75 TVLKGKIEEIELPVTKVDIIISEWMGYFL 103
+ +KG + + + + I++ +
Sbjct: 101 SFIKGDLSSLPFENEQFEAIMAINSLEWT 129
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-05
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEIE 85
+L + G G + F A G V AV+ S + AKQ+ + G IT ++ + + +
Sbjct: 33 ILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVK--ITTVQSNLADFD 89
Query: 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYAR-DKWLVDDGIVL 127
+ + I+S F + L LY + + L G+ +
Sbjct: 90 IVADAWEGIVS----IFCHLPSSLRQQLYPKVYQGLKPGGVFI 128
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-05
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 79
+ VLD+G G G SL+ + G V + + ++ + + E + I+
Sbjct: 118 IISPCKVLDLGCGQGRNSLYLSLLG-YDVTSWDHNENSIAFLNETKEKENLN--ISTALY 174
Query: 80 KIEEIELPVTKVDIIISEWMGYFL 103
I + D I+S + FL
Sbjct: 175 DINAANIQ-ENYDFIVSTVVFMFL 197
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 27 VLDVGAGTGILSLFCAK-AGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEI 84
VLDVG G G+LS+ A+ + + + S A ++ + ANG + E+
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV-FSEV 258
Query: 85 ELPVTKVDIIIS 96
+ + D+IIS
Sbjct: 259 K---GRFDMIIS 267
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS------ 71
K VL++ + T S+ A GA +V+ ++ + ++ EAN
Sbjct: 208 NGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL 267
Query: 72 ---NVITVLKGKIEEIELPVTKVDIII 95
+V K DIII
Sbjct: 268 VVMDVFDYFKYARRHHL----TYDIII 290
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 27/132 (20%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 81
+ K VLD+G +G L + G V +E + A AK+ + V+ G I
Sbjct: 32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKE--------KLDHVVLGDI 82
Query: 82 EEIELPVT--KVDIIIS----EWMGYFLLFENMLNTVLYARDKWLVDDGIVL---PDKAS 132
E +++P + D +I E + + V+ ++ +G++L P+ +
Sbjct: 83 ETMDMPYEEEQFDCVIFGDVLEHL------FD-PWAVIEKVKPYIKQNGVILASIPNVSH 135
Query: 133 L-YLTAIEDAEY 143
+ L + +
Sbjct: 136 ISVLAPLLAGNW 147
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 79
L + + +LD+ +G G ++ AK +V + ++ A MA++ VE N V
Sbjct: 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVDAEFEV--A 344
Query: 80 KIEEIELPVTKVDIII 95
E+ + D +I
Sbjct: 345 SDREVSVK--GFDTVI 358
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80
L ++ VLD+G+G G ++ + AH + ++ N+ E +N I
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICS--NIVNMANERVSGNNKIIFEAND 110
Query: 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARD--KWLVDDGIVL 127
I E P D+I S +L ++ N + KWL G +L
Sbjct: 111 ILTKEFPENNFDLIYSRDA---ILALSLENKNKLFQKCYKWLKPTGTLL 156
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLK 78
+ + D+G G+G +++ ++ E S + G S+ I V +
Sbjct: 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQ 82
Query: 79 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYA 115
G + D+I +G L +
Sbjct: 83 GAPRAFDDVPDNPDVIF---IGGGLTAPGVFAAAWKR 116
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 2e-05
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 21 LFKDKVVLDVGAGT-GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK 78
+ + + +G G + + + V VE +A ++++++E G V V+
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV-NVIT 178
Query: 79 GKIEEIELPVTKVDIII 95
G + + D+++
Sbjct: 179 GDET--VIDGLEFDVLM 193
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85
+LD G G G + + +K G V + + + AKQ + G + +
Sbjct: 50 ILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPE------ARWVVGDLSVDQ 102
Query: 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
+ T D+I+S L E+ L + L DG +
Sbjct: 103 ISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 81
+ + VLD+G G G L A G V+ + + + A+ A G V ++
Sbjct: 52 QPERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAAR----AAGAGEVHLASYAQL 106
Query: 82 EEIELPV-TKVDIIIS 96
E ++PV D+I +
Sbjct: 107 AEAKVPVGKDYDLICA 122
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS--N 72
+ + VL++ AG G L+ G V A+E S + ++ + +
Sbjct: 75 FATRTGPVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRD 133
Query: 73 VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
T+++G + L + ++ L E + + + L G L
Sbjct: 134 RCTLVQGDMSAFALD-KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 33/152 (21%)
Query: 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI---VEANGFSNVITVLK 78
F + LD+ +G+G L++ G +E + A K I + V K
Sbjct: 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAA--LKVIKENIAITKEPEKFEVRK 100
Query: 79 GK----IEEIELPVTKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIVL 127
+E+ + D++ L + L + + L ++ +++
Sbjct: 101 MDANRALEQFYEEKLQFDLV-------LLDPPYAKQEIVSQLEKM--LERQLLTNEAVIV 151
Query: 128 --------PDKASLYLTAIEDAEYKDDKIEFW 151
+ L + Y ++ +
Sbjct: 152 CETDKTVKLPETIGTLKKTRETVYGITQVTIY 183
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 17/148 (11%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 77
+ +LDV GTG K +E S+ M A++ + T+
Sbjct: 36 SRTPEASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRLPD------ATLH 88
Query: 78 KGKIEEIELPVTKVDIIISEW--MGYFLLFENMLNTVLYARDKWLVDDGIVL-----PDK 130
+G + + L K ++S + +GY E + V + L G+V+ +
Sbjct: 89 QGDMRDFRLG-RKFSAVVSMFSSVGYLKTTEELGAAVASFA-EHLEPGGVVVVEPWWFPE 146
Query: 131 ASLYLTAIEDAEYKDDKIEFWNNVYGFD 158
D +D + + +
Sbjct: 147 TFADGWVSADVVRRDGRTVARVSHSVRE 174
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 77
++L VLD+G GTG SLF + G V V+ S+ M +A++ V V+
Sbjct: 50 EYLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVARE-------KGVKNVV 101
Query: 78 KGKIEEIELPVTKVDIIISEWMGY 101
+ K E++ P + +++
Sbjct: 102 EAKAEDLPFPSGAFEAVLALGDVL 125
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 6e-05
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 27 VLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNV--ITVLKGKIE 82
++D+G G G++ L A V V+ S MA ++ VE N + +
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 285
Query: 83 EIELPVTKVDIIIS 96
+ + + ++
Sbjct: 286 S-GVEPFRFNAVLC 298
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 6e-05
Identities = 55/369 (14%), Positives = 95/369 (25%), Gaps = 138/369 (37%)
Query: 4 DVVRTKSYQNVIYQNKFLFKDK----VVLDVGAGTGILSLFCAKAGAAHVYAVECSQMAN 59
+V R + Y + + L + + V++D G+G + A V C
Sbjct: 130 NVSRLQPYLKL---RQALLELRPAKNVLIDGVLGSGKTWV------ALDV----CL---- 172
Query: 60 MAKQIVEANGFSNV--ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARD 117
+ ++ F + + + E ++ ML +LY D
Sbjct: 173 -SYKVQCKMDF-KIFWLNL--KNCNSPE------TVLE------------MLQKLLYQID 210
Query: 118 KWLVDDGIVLPDKASLYLTAIEDAE-----------YK------DDKIEFWNN--VYGFD 158
+ D +S I + Y+ + N F+
Sbjct: 211 P----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN---VQNAKAWNAFN 263
Query: 159 MSC-IKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIH 217
+SC I L+ T + VT+ T + + T D +
Sbjct: 264 LSCKI--------LLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTP---------DEVK 304
Query: 218 ALVA-YFDVTFT-------KCHKLM--GFSTGPKSRATHWKQTVLYLEDVLTICEGEAIS 267
+L+ Y D + + + W D LT I
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT----TIIE 360
Query: 268 GSLTV-APN--KKN-------PRDVDI-----------------------MLKYSLQGRH 294
SL V P +K P I + KYSL +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 295 SAISRIQYY 303
S I
Sbjct: 421 PKESTISIP 429
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 6e-05
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 27 VLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 77
VL++G G G + + + G V ++E ++A A++ + G+ NVI ++
Sbjct: 81 VLEIGTGCGYHAAVTAEIVGEDG--LVVSIERIPELAEKAERTLRKLGYDNVIVIV 134
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 8e-05
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF 70
VL+ G G G + A A + S ++ +A+
Sbjct: 52 VLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAPHADV 95
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-05
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 12/114 (10%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 77
+ K +LDV GTG+ A + V +E S M +A++ +
Sbjct: 46 RHSPKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNPD------AVLH 98
Query: 78 KGKIEEIELPVTKVDIIISEW--MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129
G + + L + + + +G+ + + ++ DG+V+ +
Sbjct: 99 HGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFA-AHVLPDGVVVVE 150
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 9e-05
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 3/104 (2%)
Query: 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEE 83
LD GAG G ++ V V+ AK + G +++
Sbjct: 81 SCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVR-NYFCCGLQD 139
Query: 84 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
D+I +W+ L +++ + + L +GI++
Sbjct: 140 FTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK-GSLRPNGIIV 182
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 27 VLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 77
VL++G GTG ++S + G V +VE ++ +AK+ VE G NVI V
Sbjct: 79 VLEIGGGTGYNAAVMSRVVGEKG--LVVSVEYSRKICEIAKRNVERLGIENVIFVC 132
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 25 KVVLDVGAGTGILS-LFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN----VITVLK 78
+ V+D+G G G L + + + V+ S + +A++ ++ + +++
Sbjct: 31 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90
Query: 79 GKIEEIELPVTKVDIIISEWM 99
G + + D +
Sbjct: 91 GALTYQDKRFHGYDAATVIEV 111
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 77
K + + VV+D+ AG G S+ A A +YA++ + A + K+ ++ N + I +
Sbjct: 191 KKVSLNDVVVDMFAGVGPFSI--ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI 248
Query: 78 KG 79
Sbjct: 249 LS 250
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI 81
+ + VLD+GAG G L+L A+ G A V VE + ++ +EAN L +
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANALKA--QALHSDV 289
Query: 82 EEIELPVTKVDIIIS 96
+E + DII++
Sbjct: 290 DEALTEEARFDIIVT 304
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 23 KDKVVLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 77
VL++G G+G IL+ HV +VE + A++ ++ NV T
Sbjct: 77 PQSRVLEIGTGSGYQTAILAHL-----VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRH 131
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 27 VLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEAN--------GFSNVIT 75
VLD+G GTG +K V V+ +A++ VE + SNV
Sbjct: 87 VLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNV-R 145
Query: 76 VLKGKIEEI------ELPVTKVDIIISEWMGYFL 103
LKG IE + +P + VDI+IS +
Sbjct: 146 FLKGFIENLATAEPEGVPDSSVDIVISNCVCNLS 179
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 2e-04
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-NGFSNV 73
Y+++F+ + V+D+ G GI + + +E + + A A+ +
Sbjct: 86 YKSRFIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKD 144
Query: 74 ITVLKGKIEEI--ELPVTKVDIIISEWM 99
+ +L G +E + D I +
Sbjct: 145 VNILTGDFKEYLPLIKTFHPDYIYVDPA 172
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 81
+ VLD+ G G +L A AA V VE + +Q NG NV T +
Sbjct: 286 PEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNV-TFYHENL 343
Query: 82 EEI 84
EE
Sbjct: 344 EED 346
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITV 76
F+ + LDV + G +L G V AV+ S A A++ NG NV +
Sbjct: 208 FRGERALDVFSYAGGFAL-HLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVL 262
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85
VL++ +GTG + + V A++ S +M A +G NV + + +
Sbjct: 50 VLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAG----RHGLDNV-EFRQQDLFDWT 103
Query: 86 LPVTKVDIIIS 96
P + D +
Sbjct: 104 -PDRQWDAVFF 113
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 3e-04
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMANMAKQIVE-ANGFSNVITVL--K 78
+D +L +GA G A VYA+E + + +++++ N+I +L
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYA--PRIMRELLDACAERENIIPILGDA 131
Query: 79 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
K +E V KVD+I + N ++ +L G +
Sbjct: 132 NKPQEYANIVEKVDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGM 175
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 40/158 (25%)
Query: 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 81
LD AG+G L A V +E V LK +
Sbjct: 52 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD---------------KTVANQLKKNL 96
Query: 82 EEIELPVTKVDII---ISEWMGYF-------LLF------ENMLNTVLY--ARDKWLVDD 123
+ ++ + ++I +++ ++F N+ + + WL +
Sbjct: 97 QTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPN 156
Query: 124 GIV-------LPDKASLYLTAIEDAEYKDDKIEFWNNV 154
++ P T +++ + N+
Sbjct: 157 ALIYVETEKDKPLITPENWTLLKEKTTGIVSYRLYQNL 194
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 4e-04
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 21/125 (16%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 77
+ + VLD+G G G C + G V+ ++ M + V+
Sbjct: 37 PYFKGCRRVLDIGCGRGEFLELCKEEG-IESIGVDINEDMIKFCEGK---------FNVV 86
Query: 78 KGKIEEI--ELPVTKVDIIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVL---PDK 130
K E LP +D ++ + +F+ L L +L + ++ P+
Sbjct: 87 KSDAIEYLKSLPDKYLDGVM---ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP 143
Query: 131 ASLYL 135
SLY
Sbjct: 144 TSLYS 148
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG 79
+ +++ D+G G+G +S+ AG +E ++ ++ G S + ++G
Sbjct: 53 PRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG 111
Query: 80 KIEEI--ELP 87
+LP
Sbjct: 112 TAPAALADLP 121
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 14/77 (18%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG 79
L + +++G GTG ++ VE S +MA +A++ + VLKG
Sbjct: 45 LLPEGRGVEIGVGTGRFAVPLKI-----KIGVEPSERMAEIARK--------RGVFVLKG 91
Query: 80 KIEEIELPVTKVDIIIS 96
E + L D +
Sbjct: 92 TAENLPLKDESFDFALM 108
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 80
+ +D+G G + + A E M N AK+ VE N S++I V+K
Sbjct: 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP 124
Query: 81 IEEIELPVTKVDIIISEWMGYFLLFEN 107
+ + + + + Y N
Sbjct: 125 QKTLLMD----ALKEESEIIYDFCMCN 147
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 6e-04
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 63
+L++G G G + AG V A + S +A A +
Sbjct: 47 ILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASR 83
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 7e-04
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSN 72
+ VL++ TG+ SL A AG A V V+ S+ A AK+ G
Sbjct: 153 RPLKVLNLFGYTGVASLVAAAAG-AEVTHVDASKKAIGWAKENQVLAGLEQ 202
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 8e-04
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN 72
+L +D +LD+G G+G +SL A G V ++ + +A+ + G +
Sbjct: 26 NYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQ 79
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 306 | |||
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 100.0 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.68 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.68 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.68 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.67 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.65 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.65 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.64 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.64 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.63 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.63 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.63 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.63 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.62 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.61 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.61 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.61 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.61 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.61 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.6 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.6 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.6 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.6 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.59 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.59 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.59 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.59 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.59 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.59 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.59 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.58 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.58 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.58 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.58 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.58 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.58 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.58 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.58 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.57 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.57 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.57 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.57 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.57 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.57 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.57 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.56 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.56 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.56 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.56 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.55 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.55 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.55 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.55 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.55 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.55 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.55 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.55 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.55 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.55 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.55 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.54 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.54 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.54 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.54 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.53 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.53 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.53 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.53 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.53 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.52 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.52 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.52 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.52 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.52 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.52 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.52 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.51 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.51 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.51 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.51 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.51 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.51 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.51 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.51 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.5 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.5 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.5 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.5 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.49 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.49 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.49 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.49 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.49 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.49 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.49 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.49 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.49 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.48 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.48 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.48 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.48 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.48 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.48 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.47 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.47 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.47 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.47 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.47 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.47 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.47 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.46 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.46 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.45 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.45 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.45 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.45 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.45 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.45 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.44 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.44 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.44 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.44 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.44 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.44 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.43 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.43 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.43 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.43 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.43 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.43 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.43 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.42 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.42 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.42 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.42 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.42 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.42 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.42 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.42 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.41 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.41 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.41 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.41 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.41 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.41 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.41 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.4 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.4 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.4 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.4 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.4 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.4 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.4 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.4 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.4 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.39 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.39 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.39 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.38 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.38 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.37 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.37 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.37 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.37 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.37 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.37 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.37 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.36 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.36 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.36 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.36 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.35 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.35 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.35 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.35 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.35 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.35 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.35 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.35 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.35 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.34 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.34 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.34 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.34 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.34 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.33 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.33 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.32 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.32 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.31 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.31 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.31 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.31 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.3 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.3 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.3 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.3 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.29 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.29 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.29 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.28 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.28 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.27 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.27 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.27 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.27 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.26 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.26 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.25 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.25 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.24 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.24 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.24 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.24 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.24 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.24 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.24 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.24 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.23 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.22 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.22 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.22 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.22 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.21 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.21 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.21 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.18 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.17 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.14 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.14 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.14 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.13 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.13 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.12 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.11 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.1 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.1 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.07 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.06 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.06 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.05 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.05 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.04 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.04 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.03 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.02 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.0 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.97 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.94 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.94 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.93 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.91 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.89 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.87 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.85 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.85 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.8 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.78 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.76 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.73 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.67 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.65 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.55 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.54 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.54 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.53 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.52 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.5 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.47 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.41 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.38 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.35 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.3 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.12 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.11 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.07 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.07 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.06 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.86 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.79 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.79 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.75 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.58 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.57 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.39 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.38 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.26 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.11 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.0 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.77 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.75 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.72 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.63 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.5 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.43 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.26 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.23 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.16 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.07 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.9 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.87 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.84 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.77 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.75 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.75 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.64 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.61 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.6 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.6 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.59 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.54 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.49 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.47 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.39 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.34 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 95.3 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.22 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.19 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.17 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.16 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.14 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.13 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.06 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.98 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.96 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.89 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.82 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.66 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.5 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.5 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.48 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.47 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.38 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.19 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.19 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.18 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 94.07 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.04 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.81 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 93.8 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.75 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.71 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.67 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.61 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.55 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.38 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.32 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 93.29 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 93.24 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 93.14 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.11 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 93.02 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 93.01 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.8 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 92.78 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 92.53 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.49 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.37 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.36 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 92.34 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.2 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.12 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.86 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.77 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.69 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.63 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 91.56 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.52 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 91.51 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 91.27 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.17 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.15 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 90.87 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.84 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 90.77 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 90.44 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 90.29 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 90.26 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.24 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 90.14 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.01 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.92 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 89.72 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 89.65 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 89.55 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 89.45 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 89.26 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 89.16 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 89.1 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 88.99 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 88.9 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 88.82 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 88.63 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 88.63 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.43 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 88.4 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 88.32 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 87.66 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 87.63 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 86.72 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 86.63 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 86.5 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 86.41 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 86.37 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 86.3 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 86.19 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 86.08 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 86.02 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 85.83 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 85.79 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 85.45 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.24 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 85.21 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 85.15 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 84.96 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 84.67 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 84.23 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 84.17 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 84.13 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 84.02 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 83.91 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 83.75 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 83.71 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 83.52 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 83.51 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 83.49 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 83.37 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 83.32 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 83.25 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 82.78 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 82.56 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 82.55 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 82.5 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 82.32 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 82.31 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 82.27 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 82.14 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 82.14 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 81.92 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 81.88 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 81.82 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 81.77 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 81.65 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 81.33 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 81.25 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 80.37 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 80.32 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 80.13 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 80.02 |
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-65 Score=463.99 Aligned_cols=301 Identities=39% Similarity=0.706 Sum_probs=275.4
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
||+|..||++|++||.++....+|++|||||||+|+++++||++||++|+|||.|+|++.|+++++.|++.++|++++++
T Consensus 61 ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~ 140 (376)
T 4hc4_A 61 MIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGP 140 (376)
T ss_dssp HHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeee
Confidence 89999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhcccccc---CCC
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNV---YGF 157 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~---~g~ 157 (306)
++++.+| +++|+||||++++++.+|..++.+++++.++|+|||.++|+.+++|++|+++..+ ...+.+|.++ |||
T Consensus 141 ~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~~~l-~~~i~~w~~v~~~yGf 218 (376)
T 4hc4_A 141 VETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQML-EWRLGFWSQVKQHYGV 218 (376)
T ss_dssp TTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHH-HHHHHGGGGHHHHHSC
T ss_pred eeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEeccchh-hhhhcchhccccccCc
Confidence 9999887 8999999999999999999999999999999999999999999999999998544 3456789876 999
Q ss_pred Cchhhhhhhc------CCceEEeeCCCCccCCCeEEEEEEcCCCCCC---CCceeeeEEEEEeecceEEEEEEEEEEEec
Q 021852 158 DMSCIKKQAM------MEPLVDTVDQNQIVTNCQLLKTMDISKMGPG---DASFTAPFKLVAQRNDYIHALVAYFDVTFT 228 (306)
Q Consensus 158 ~~~~~~~~~~------~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~ 228 (306)
|++++..... .+|.++.+++..++++|+.+++|||.+...+ +..+...+++++.++|.+|||++||++.|+
T Consensus 219 d~s~~~~~~~~~~~~~~e~~v~~~~~~~~Ls~p~~i~~~D~~~~~~~~~~~~~~~~~f~~~~~~~g~vhg~~~WFd~~f~ 298 (376)
T 4hc4_A 219 DMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFP 298 (376)
T ss_dssp CCGGGHHHHHHHHHSSCEEEEECCCGGGBCSCCEEEEEEETTCTTHHHHHHHCEEEEEEEECCSSEEEEEEEEEEEEEEC
T ss_pred CchhhhhhhhhhhcccCceEEEeecccccccCCEEEEEEECCCCCccccccccceeEEEEEecCCcEEEEEEEEEEEEec
Confidence 9999876543 4688899999999999999999999987654 235667889999999999999999999997
Q ss_pred CC--CceeEEecCCCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEcceeeeeeceeEEEeC
Q 021852 229 KC--HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 306 (306)
Q Consensus 229 ~~--~~~~~lst~p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
+. +.++.|||+|..+.|||+|++|+|++|+.|++||+|+++++++++++++|+++|+++|+..++..+ ++.|+|+
T Consensus 299 ~~~~~~~v~lST~P~~~~THW~Q~v~~L~~Pi~V~~G~~I~g~i~~~~~~~n~R~~~i~i~~~~~~~~~~---~~~~~~~ 375 (376)
T 4hc4_A 299 GGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLRYKVGDQEEK---TKDFAME 375 (376)
T ss_dssp CCC--CCEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEEEETTSCCE---EEEEEEC
T ss_pred CCCCCCceEEeCCCCcCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCceeEEEEEEEeCCCCcc---eEEEeCC
Confidence 52 346899999999999999999999999999999999999999999999999999999999887644 6899985
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-59 Score=423.96 Aligned_cols=306 Identities=58% Similarity=0.999 Sum_probs=292.9
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
|++|..|+..|.++|.......++++|||+|||+|.+++.+++.|+++|+|+|+|+|++.|+++++.+++.++++++.+|
T Consensus 44 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d 123 (349)
T 3q7e_A 44 LLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGK 123 (349)
T ss_dssp HHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 67899999999999998777889999999999999999999999888999999999999999999999998889999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhccccccCCCCch
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 160 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 160 (306)
+++++++.++||+|+++++++++.++..++.++.++.++|+|||.++|+.+..++.++....+......+|.+++||+++
T Consensus 124 ~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~ 203 (349)
T 3q7e_A 124 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMS 203 (349)
T ss_dssp TTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHTGGGGCBTTBCCG
T ss_pred HHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEeeecChhhhhhhhcccccccCcchH
Confidence 99988877899999999999988899999999999999999999999999999999999988888888999999999999
Q ss_pred hhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceEEEEEEEEEEEecCCCceeEEecCC
Q 021852 161 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240 (306)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~lst~p 240 (306)
.+.+....+|+++.+++..++++|+.+.++|+.+.+.+++.+.+++++++.++|.+|||++||++.|++++.++.|||+|
T Consensus 204 ~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~Fd~~~~~~~~~v~lst~P 283 (349)
T 3q7e_A 204 CIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 283 (349)
T ss_dssp GGHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEEEEEEEEECTTSSSCCEEECST
T ss_pred HHhHhhhcCcEEEEEChhhEecccEEEEEEEcccCchhhcceeeeEEEEEccCCEEEEEEEEEEEEecCCCCccEEECCC
Confidence 99999999999999999999999999999999999989998999999999999999999999999999877789999999
Q ss_pred CCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEcceeeeeeceeEEEeC
Q 021852 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 306 (306)
Q Consensus 241 ~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
..+.+||+|++|+|++|+.|++|++|++++++++|++++|+++|+++|+.+|+..++.++++|+||
T Consensus 284 ~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (349)
T 3q7e_A 284 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 349 (349)
T ss_dssp TSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCSSCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CcCCCcceeEEEEECCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEeCCcccccccCceEecC
Confidence 988999999999999999999999999999999999999999999999999999999999999998
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=415.48 Aligned_cols=306 Identities=49% Similarity=0.867 Sum_probs=288.0
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
|++|..|+..|.++|.+.....++.+|||+|||+|.+++.+++.|+++|+|+|.++|++.|+++++.+++.++++++.+|
T Consensus 16 ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d 95 (328)
T 1g6q_1 16 MLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGK 95 (328)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECc
Confidence 78999999999999987777788999999999999999999999888999999998999999999999998889999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhccccccCCCCch
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 160 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 160 (306)
+.+++++.++||+|+++++++++.++..+..++.++.++|+|||.++|+.+++++.++.+..+......+|.+++||+++
T Consensus 96 ~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~w~~~~gf~~~ 175 (328)
T 1g6q_1 96 LEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYS 175 (328)
T ss_dssp TTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHHHHTTCBTTBCCT
T ss_pred hhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecCchhhhhhhcccccccCcChH
Confidence 99887776899999999998888888899999999999999999999999999999999877777777889999999999
Q ss_pred hhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceEEEEEEEEEEEecC--CCceeEEec
Q 021852 161 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTK--CHKLMGFST 238 (306)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~--~~~~~~lst 238 (306)
.+.+....+|+++.+++..++++|+.++++||.+...+++.+...++++++++|.+|||++||+++|++ +++++.+||
T Consensus 176 ~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~~~~~~~~~~v~lst 255 (328)
T 1g6q_1 176 PFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFST 255 (328)
T ss_dssp THHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEEECCCCTTSCCCEEEC
T ss_pred HHhhhhhcCCeEEEeccceeecCCEEEEEEECCCCChhHhceeeeEEEEEecCcEEEEEEEEEEEEcCCCCCCCceEEEC
Confidence 999999899999999999999999999999999988888888899999999999999999999999997 667899999
Q ss_pred CCCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEcceee-----eeeceeEEEeC
Q 021852 239 GPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHS-----AISRIQYYKMR 306 (306)
Q Consensus 239 ~p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 306 (306)
+|..+.+||+|++|||++|+.|++|++|+++++++++..++|+++|+++|+.+|... ....+++|+||
T Consensus 256 ~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (328)
T 1g6q_1 256 GPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLMH 328 (328)
T ss_dssp STTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEECCSSTHHHHCEEEEEEEEEC
T ss_pred CCCcCCCcceeEEEEeCCceecCCCCEEEEEEEEEECCCCCceEEEEEEEEecCccCcccccccccceeEEeC
Confidence 999999999999999999999999999999999999999999999999999999888 77889999997
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-54 Score=392.17 Aligned_cols=298 Identities=47% Similarity=0.830 Sum_probs=276.1
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
|++|..|+..|.++|.+.....++.+|||+|||+|.+++.+++.|+.+|+|+|.++|++.|+++++.+++.++++++.+|
T Consensus 42 ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d 121 (340)
T 2fyt_A 42 MLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK 121 (340)
T ss_dssp HHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEee
Confidence 78999999999999998888889999999999999999999999888999999988999999999999998889999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhccccccCCCCch
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 160 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 160 (306)
+.+++++.++||+|+++++++++.++..++.++.++.++|+|||.++|+.+++++.++....+......+|.+++||+++
T Consensus 122 ~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 201 (340)
T 2fyt_A 122 IEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMS 201 (340)
T ss_dssp TTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHTGGGGCBTTBCCG
T ss_pred HHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEecchhHhhhhhcccccccCcChH
Confidence 99988777899999999988888888999999999999999999999999999999998887777788899999999999
Q ss_pred hhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceEEEEEEEEEEEec-CCCceeEEecC
Q 021852 161 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFT-KCHKLMGFSTG 239 (306)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~-~~~~~~~lst~ 239 (306)
.+.+....+|+++.+++..++++|+.++++||.+...++..+...+.+.+.++|.+|||++||++.|+ ++++++.+||+
T Consensus 202 ~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~v~lst~ 281 (340)
T 2fyt_A 202 CMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTG 281 (340)
T ss_dssp GGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEEEECTTCSSCEEEECS
T ss_pred HHHHhhhcCcEEEEechhhcccCCEEEEEEECCCCcccccceEeeEEEEEccCcEEEEEEEEEEEEeecCCCCCEEEECC
Confidence 99988888999999888999999999999999998888888888999999999999999999999994 45568999999
Q ss_pred CCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEcceeeeeeceeEEEeC
Q 021852 240 PKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 306 (306)
Q Consensus 240 p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
|..+.+||+|++|||++|+.|++|++|+++++++.++.++|+++|+++|.. .++.|+||
T Consensus 282 P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~--------~~~~~~~~ 340 (340)
T 2fyt_A 282 PQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNN--------STQTYGLQ 340 (340)
T ss_dssp TTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEETT--------EEEEEEEC
T ss_pred CCcCCCccccEEEEeCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEEEc--------ceEEEecC
Confidence 998999999999999999999999999999999999999999999887643 25889886
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-53 Score=390.39 Aligned_cols=296 Identities=34% Similarity=0.629 Sum_probs=271.3
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
|++|..|++.|.++|.......++++|||+|||+|.+++.+++.|+++|+|+|.|+|++.|+++++.+++.++++++++|
T Consensus 41 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d 120 (376)
T 3r0q_C 41 MLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGS 120 (376)
T ss_dssp HHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECc
Confidence 78999999999999998888889999999999999999999999988999999889999999999999998889999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchh----------cc
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKI----------EF 150 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~----------~~ 150 (306)
++++.++ ++||+|+++++++++.++..+..++.++.++|+|||.++|+.++.+..++....+..... .+
T Consensus 121 ~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~f 199 (376)
T 3r0q_C 121 VEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWHNF 199 (376)
T ss_dssp GGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECCTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecchHHhhhhhhhhhhhhhhhhh
Confidence 9998877 899999999999999888999999999999999999999999999999998876554433 67
Q ss_pred c---cccCCCCchhhhhh--------hcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCc-eeeeEEEEE-eecceEE
Q 021852 151 W---NNVYGFDMSCIKKQ--------AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-FTAPFKLVA-QRNDYIH 217 (306)
Q Consensus 151 w---~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~-~~~~~~~~~-~~~g~~~ 217 (306)
| .+.+|++++.+.+. ...+|+++.+.+.+++++|+.++++||.+...+++. +...+++++ .++|.+|
T Consensus 200 w~~~~~~~G~d~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (376)
T 3r0q_C 200 SDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLC 279 (376)
T ss_dssp HHHHHHSTTCCCGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCCEEEEEEETTTCCGGGTSEEEEEEEEBCSCSCEEEE
T ss_pred hhccCccccCChHHHHhhhhhhhhhhcccCceEEEEChHHccCCCeEEEEEEcCcCCHHHhcccccceEEEEeccCceEE
Confidence 8 78999999999887 568899999999999999999999999998888875 788999999 9999999
Q ss_pred EEEEEEEEEecCC-----CceeEEecCCC-CCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEc
Q 021852 218 ALVAYFDVTFTKC-----HKLMGFSTGPK-SRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ 291 (306)
Q Consensus 218 g~~~wf~~~l~~~-----~~~~~lst~p~-~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (306)
||++||+++|++. +.++.|||+|. .+.+||+|++|||++|+.|++||+|++++.++++++++|+++|+++|..+
T Consensus 280 g~~~wfd~~~~~~~~~~~~~~v~lSt~P~~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (376)
T 3r0q_C 280 GFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIK 359 (376)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECCCCSSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEEEEE
T ss_pred EEEEEEEEEecCCccCCCCCccEEECCCCcCCCCceeeEEEEECCceecCCCCEEEEEEEEEECCCCCeeEEEEEEEEec
Confidence 9999999999742 23689999998 46899999999999999999999999999999999999999999999998
Q ss_pred ceeeee
Q 021852 292 GRHSAI 297 (306)
Q Consensus 292 ~~~~~~ 297 (306)
++.++.
T Consensus 360 ~~~~~~ 365 (376)
T 3r0q_C 360 EASGNP 365 (376)
T ss_dssp CSSSCC
T ss_pred CcCCCC
Confidence 776643
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-50 Score=384.60 Aligned_cols=288 Identities=22% Similarity=0.286 Sum_probs=245.6
Q ss_pred CChHHHHHHHHHHHhcc--------cCCCCCEEEEEcCCCcHHHHHHHHcC---CC--EEEEEechHHHHHHHHHHHHcC
Q 021852 3 KDVVRTKSYQNVIYQNK--------FLFKDKVVLDVGAGTGILSLFCAKAG---AA--HVYAVECSQMANMAKQIVEANG 69 (306)
Q Consensus 3 ~D~~R~~~~~~ai~~~~--------~~~~~~~VLDlG~G~G~l~~~~a~~g---~~--~v~~iD~s~~~~~a~~~~~~~~ 69 (306)
+|.+|++.|++||.++. ...++.+|||+|||+|.|++++++++ +. +|||||.|+|+..|++..++|+
T Consensus 329 kD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~ 408 (637)
T 4gqb_A 329 KDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEE 408 (637)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhcc
Confidence 79999999999998542 23455789999999999966666543 33 7899999999999999999999
Q ss_pred CCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhc
Q 021852 70 FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIE 149 (306)
Q Consensus 70 ~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~ 149 (306)
+.++|++++++++++.+| +++|+||||+||+++.+|.++ .++.++.|+|||||+++|+.+++|++|+++..++.+...
T Consensus 409 ~~dkVtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimiPs~atlyiapi~~~~l~~e~~~ 486 (637)
T 4gqb_A 409 WGSQVTVVSSDMREWVAP-EKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRA 486 (637)
T ss_dssp TGGGEEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEEEEEEEEECHHHHHHHHT
T ss_pred CCCeEEEEeCcceeccCC-cccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEccccceEEEEEecCHHHHHHHHh
Confidence 999999999999999988 899999999999999999987 688999999999999999999999999999999888888
Q ss_pred cccccCCCCchhhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCCC-CCCceeeeEEEEEeecceEEEEEEEEEEEec
Q 021852 150 FWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGP-GDASFTAPFKLVAQRNDYIHALVAYFDVTFT 228 (306)
Q Consensus 150 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~ 228 (306)
+|...++++.. +..|++..+.+...+++|+.+++||+.+... .+..+...++|++.++|++|||++||++.|+
T Consensus 487 ~~~~~~~~~~~------~~~p~Vv~~~~~~~Ls~p~~~~~fd~~~~~~~~~~~~~~~~~f~i~~~g~vhGf~~wFD~~f~ 560 (637)
T 4gqb_A 487 CREKDRDPEAQ------FEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHGFAGYFETVLY 560 (637)
T ss_dssp TCCTTSCTTGG------GGSCEECBCCSCEECSCCEEEEEEESSCCSTTCCCCEEEEEEEECCSCEEEEEEEEEEEEEEE
T ss_pred cccccccchhh------cCCcEEEEecCccccCCCEEEEEEECCCCCccccceEEEEEEEEecCCcEEEEEEEEEEEEee
Confidence 88888777553 4568888888889999999999999977543 3456778899999999999999999999999
Q ss_pred CCCceeEEecCCCC---CCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEcceeeee--eceeEE
Q 021852 229 KCHKLMGFSTGPKS---RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAI--SRIQYY 303 (306)
Q Consensus 229 ~~~~~~~lst~p~~---~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 303 (306)
+ ++.|||+|.. +.+||+|++|||++|+.|++||+|+++++++.+ .+.+.+++...-.- ...+ .++++|
T Consensus 561 ~---~V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I~~~~~R~~d---~~kVWYEW~v~~p~-~s~ihN~~Gr~y 633 (637)
T 4gqb_A 561 Q---DITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSN---SKKVWYEWAVTAPV-CSAIHNPTGRSY 633 (637)
T ss_dssp T---TEEEECSGGGCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEEEEEC---SSEEEEEEEEEESS-CCCCBSGGGSSC
T ss_pred C---CeEEECCCCCCCCCCCcccCeEEEeCCCeEECCCCEEEEEEEEEeC---CCceeEEEEEeCCc-CccccCCCCcee
Confidence 8 8999999964 358999999999999999999999999999866 34567766554321 1112 566777
Q ss_pred Ee
Q 021852 304 KM 305 (306)
Q Consensus 304 ~~ 305 (306)
.|
T Consensus 634 ~i 635 (637)
T 4gqb_A 634 TI 635 (637)
T ss_dssp CE
T ss_pred ee
Confidence 66
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-50 Score=379.14 Aligned_cols=299 Identities=18% Similarity=0.215 Sum_probs=247.3
Q ss_pred CCCChHHHHHHHHHHHhccc-CC----CCCEEEEEcCCCcHHHHHHHHc----C----------CCEEEEEechHHHHHH
Q 021852 1 MLKDVVRTKSYQNVIYQNKF-LF----KDKVVLDVGAGTGILSLFCAKA----G----------AAHVYAVECSQMANMA 61 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~-~~----~~~~VLDlG~G~G~l~~~~a~~----g----------~~~v~~iD~s~~~~~a 61 (306)
|++|.+|++.|++||.++.. .. ++++|||+|||+|.|+++++++ + +.+|||||.++++..+
T Consensus 382 fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~ 461 (745)
T 3ua3_A 382 FEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVT 461 (745)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHH
T ss_pred HcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHH
Confidence 67899999999999998642 22 3569999999999997654332 2 3399999999655555
Q ss_pred HHHHHHcCCCCeEEEEEceeeeecCC-----CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEE
Q 021852 62 KQIVEANGFSNVITVLKGKIEEIELP-----VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLT 136 (306)
Q Consensus 62 ~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~ 136 (306)
.+....|++.++|++++++++++.+| .+++|+||||+||+++.+|.. +..++.+.++|||||++||+.+++|++
T Consensus 462 l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~-pe~Ld~v~r~Lkp~Gi~iP~~~t~yla 540 (745)
T 3ua3_A 462 LKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELS-PECLDGVTGFLKPTTISIPQKYTSYVK 540 (745)
T ss_dssp HHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSH-HHHHHTTGGGSCTTCEEESCEEEEEEE
T ss_pred HHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhcc-HHHHHHHHHhCCCCcEEECCccEEEEE
Confidence 45555699999999999999999873 489999999999999988855 457788889999999999999999999
Q ss_pred Eeeccccccchhccccc--cCCCCc-------------------hhhhhhhcCCceEEeeCCCCccCC-CeEEEEEEcCC
Q 021852 137 AIEDAEYKDDKIEFWNN--VYGFDM-------------------SCIKKQAMMEPLVDTVDQNQIVTN-CQLLKTMDISK 194 (306)
Q Consensus 137 ~~~~~~~~~~~~~~w~~--~~g~~~-------------------~~~~~~~~~~~~~~~~~~~~~ls~-p~~~~~~d~~~ 194 (306)
|+.++.++.+...++.+ ++||+. ++.....+++|++..+.+..++++ |+++++||+.+
T Consensus 541 Pi~~~~l~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~~~~~a~e~PyVv~l~~~~~Ls~~pq~vftFdhp~ 620 (745)
T 3ua3_A 541 PIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVFTFEHPN 620 (745)
T ss_dssp EEECHHHHHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTCHHHHHHSSCEEECCCSCEESSSSCEEEEEEESSC
T ss_pred EecCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccEEEeeccceecCCCCceEEEEECCC
Confidence 99999887665554432 345521 344566778999999999999999 99999999999
Q ss_pred CCCCCCceeeeEEEEEeecceEEEEEEEEEEEecCCCceeEEecCCCCC---CCCceeEEEecCCeeeccCCCEEEEEEE
Q 021852 195 MGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSR---ATHWKQTVLYLEDVLTICEGEAISGSLT 271 (306)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~lst~p~~~---~~~W~q~~~~l~~p~~v~~g~~l~~~~~ 271 (306)
...++..+...++|++.++|.+|||++||++.|++ ++.|||+|..+ .+||+|++|||++|+.|++||+|+++++
T Consensus 621 ~~~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Lyk---~V~LST~P~t~s~~mThWfQtfFPL~ePL~V~~GdeI~g~~~ 697 (745)
T 3ua3_A 621 FMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYK---TVMLSIEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRISLKID 697 (745)
T ss_dssp TTCCCSCEEEEEEEECCSSEEEEEEEEEEEEEEET---TEEEECSSTTCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEE
T ss_pred CCccccceeEEEEEEeCCCcEEEEEEEEEEEEecC---CcEEecCCCCCCCCCccceeEEEecCCceEeCCCCEEEEEEE
Confidence 88788889999999999999999999999999997 89999999875 4799999999999999999999999999
Q ss_pred EeeCCCCCeeeEEEEEEEEcceeeee-------eceeEEEeC
Q 021852 272 VAPNKKNPRDVDIMLKYSLQGRHSAI-------SRIQYYKMR 306 (306)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 306 (306)
++.+. +-+.+++.+.+.+..++- .++.||.|+
T Consensus 698 R~~d~---~kVWYEW~v~~~~~~g~p~~~~ihN~~G~sy~~~ 736 (745)
T 3ua3_A 698 RKVDN---TGVWYEWHVEKKKTNGESVSTPIQNPNGESYYMR 736 (745)
T ss_dssp EEEET---TEEEEEEEEEEECTTSCEEECCCBSGGGSSCCEE
T ss_pred EEcCC---CCEEEEEEEEeccCCCCccccccCCCCCcEEeec
Confidence 98663 568888887754433332 677778763
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=334.99 Aligned_cols=291 Identities=37% Similarity=0.598 Sum_probs=243.3
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
|++|..|+..|.++|.+.....++.+|||||||+|.+++.+++.|+++|+|+|.|++++.|+++++.+++.++++++.+|
T Consensus 28 ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d 107 (348)
T 2y1w_A 28 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGK 107 (348)
T ss_dssp HHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcc
Confidence 78999999999999998888889999999999999999999999888999999998889999999999998889999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccc---hhccc--cccC
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD---KIEFW--NNVY 155 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~---~~~~w--~~~~ 155 (306)
+++++++ ++||+|+++++++++..+.... .+..+.++|+|||.++|+.++.+..++....+..+ ...+| ...+
T Consensus 108 ~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~-~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~~~~~~~~~~~w~~~~~~ 185 (348)
T 2y1w_A 108 VEEVSLP-EQVDIIISEPMGYMLFNERMLE-SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFH 185 (348)
T ss_dssp TTTCCCS-SCEEEEEECCCBTTBTTTSHHH-HHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHGGGCCSCBT
T ss_pred hhhCCCC-CceeEEEEeCchhcCChHHHHH-HHHHHHhhcCCCeEEEEecCcEEEEEecchHHhhhhccccCcccccccC
Confidence 9988766 7899999998877776665555 44567799999999999999999999987655432 24567 3678
Q ss_pred CCCchhhhhhh----cCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCc-eeeeEEEEEeecceEEEEEEEEEEEecCC
Q 021852 156 GFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-FTAPFKLVAQRNDYIHALVAYFDVTFTKC 230 (306)
Q Consensus 156 g~~~~~~~~~~----~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~wf~~~l~~~ 230 (306)
|++++.+.... +..|.++..+.....+.+ ....+||.+...+++. +...+++++.++|.+|||++||+++|+++
T Consensus 186 g~d~~~l~~~~~~~~f~~p~~d~~~~~~~~~~~-~~~~~df~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~~~~~ 264 (348)
T 2y1w_A 186 GVDLSALRGAAVDEYFRQPVVDTFDIRILMAKS-VKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGS 264 (348)
T ss_dssp TBCCGGGHHHHHHHHHTSCEEECCCGGGBCBCC-EEEEEETTTCCGGGGSEEEEEEEEEBSSCEEEEEEEEEEEEEEECS
T ss_pred cccHHHhhhHHHhhhccCCeEEeECCeeecCcc-eEEEEECCcCChHHhceeeeeEEEEEccCcEEEEEEEEEEEEEcCC
Confidence 99998876553 356777765543333444 4567799988877764 56789999999999999999999999976
Q ss_pred CceeEEecCCCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEcceeee
Q 021852 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSA 296 (306)
Q Consensus 231 ~~~~~lst~p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (306)
..++.+||+|..+.+||+|++|+|++|+.|++||+|++++++++++.+.+++++ ++++++....
T Consensus 265 ~~~v~lSt~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 328 (348)
T 2y1w_A 265 IMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISI--VAQVDQTGSK 328 (348)
T ss_dssp SCEEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECTTSSEEEEE--EEEETTTCCE
T ss_pred CCceEEECCCCcCCCeeeeEEEeeCCceEeCCCCEEEEEEEEEECCCCCcEEEE--EEEEccccce
Confidence 668999999998899999999999999999999999999999999877766555 4466655443
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-44 Score=333.85 Aligned_cols=289 Identities=37% Similarity=0.603 Sum_probs=242.9
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
||+|..|++.|.+++.......++.+|||+|||+|.+++.+++.|+.+|+|+|+|++++.|+++++.+++.++++++.+|
T Consensus 136 ~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d 215 (480)
T 3b3j_A 136 MMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGK 215 (480)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred hhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 57788999999999998777778999999999999999999998888999999998999999999999998889999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccc---hhcccc--ccC
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD---KIEFWN--NVY 155 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~---~~~~w~--~~~ 155 (306)
+.+++++ ++||+|+++++++++..+..+.. +..+.++|+|||.++|..+..+..++....++.+ ...+|. .++
T Consensus 216 ~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~-l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e~~~~~~~w~~~~~~ 293 (480)
T 3b3j_A 216 VEEVSLP-EQVDIIISEPMGYMLFNERMLES-YLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFH 293 (480)
T ss_dssp TTTCCCS-SCEEEEECCCCHHHHTCHHHHHH-HHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHHHHHSSCBT
T ss_pred hhhCccC-CCeEEEEEeCchHhcCcHHHHHH-HHHHHHhcCCCCEEEEEeceeeeeccCchHHHHHHhhccCccccccCC
Confidence 9987666 78999999988777766655554 4467799999999999999999999887655432 234563 678
Q ss_pred CCCchhhhhhh----cCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCc-eeeeEEEEEeecceEEEEEEEEEEEecCC
Q 021852 156 GFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-FTAPFKLVAQRNDYIHALVAYFDVTFTKC 230 (306)
Q Consensus 156 g~~~~~~~~~~----~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~wf~~~l~~~ 230 (306)
|++++.+.+.. +..|.++..+.....+.+.. ..+||.+...+++. ....+++.+.++|.+|||++||+++|+++
T Consensus 294 g~dl~~l~~~~~~~~f~~pvvd~~~~~~~y~~tl~-~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~hg~~~wFd~~~~~~ 372 (480)
T 3b3j_A 294 GVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVK-YTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGS 372 (480)
T ss_dssp TBCCGGGHHHHHHHHTTSCEECCCCSTTBCSCCEE-EEEETTTCCTTTTTEEEEEEEEECSSCEEEEEEEEEEEEEEECS
T ss_pred CcChhhhhhHHHHhccCCcEEEEeecccccchhhh-hhhhhhcCChhhhcceeeeEEEEEccCcEEEEEEEEEEEEEcCC
Confidence 99998886553 45577776665555666654 68999998888775 46889999999999999999999999976
Q ss_pred CceeEEecCCCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEccee
Q 021852 231 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRH 294 (306)
Q Consensus 231 ~~~~~lst~p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (306)
..++.|||+|..+.+||+|++|+|++|+.|++||+|+++++++.++.+.+++++++ .+++..
T Consensus 373 ~~~v~lST~P~~~~thW~q~~~~l~~p~~v~~g~~i~g~~~~~~~~~~~~~v~~~~--~~~~~~ 434 (480)
T 3b3j_A 373 IMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVA--QVDQTG 434 (480)
T ss_dssp SCEEESSSCCSSSCCCSEEEEEEEEEEEEECTTCEEEEEEEEEECTTSSEEEEEEE--EETTTC
T ss_pred CCceEEeCCCCcCCCeeeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCcEEEEEE--EEccCC
Confidence 66899999999889999999999999999999999999999999987777655544 555544
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-16 Score=133.95 Aligned_cols=111 Identities=17% Similarity=0.268 Sum_probs=95.1
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
.++.....+.++.+|||+|||+|.++..+++.+..+|+|+|+| .+++.|++++..++++++++++.+|+.+++++.++|
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 115 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL 115 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence 3343334567889999999999999999999765599999999 899999999999999888999999999888777899
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++..+.+++ ....++..+.++|+|||.++
T Consensus 116 D~v~~~~~l~~~----~~~~~l~~~~~~L~pgG~l~ 147 (257)
T 3f4k_A 116 DLIWSEGAIYNI----GFERGMNEWSKYLKKGGFIA 147 (257)
T ss_dssp EEEEEESCSCCC----CHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEecChHhhc----CHHHHHHHHHHHcCCCcEEE
Confidence 999997654433 46789999999999999997
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=134.99 Aligned_cols=104 Identities=20% Similarity=0.314 Sum_probs=92.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
.+.++.+|||+|||+|.++..+++.+..+|+|+|+| .+++.|+++++..+++++++++.+|+.+++++.++||+|++..
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 367789999999999999999999877799999999 8999999999999998889999999999887778999999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+++ ....++..+.++|+|||.++
T Consensus 123 ~~~~~----~~~~~l~~~~~~LkpgG~l~ 147 (267)
T 3kkz_A 123 AIYNI----GFERGLNEWRKYLKKGGYLA 147 (267)
T ss_dssp CGGGT----CHHHHHHHHGGGEEEEEEEE
T ss_pred Cceec----CHHHHHHHHHHHcCCCCEEE
Confidence 54443 46788999999999999997
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-16 Score=134.17 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=89.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcC---CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g---~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
.+.+|.+|||||||+|.++..+++.. ..+|+|+|+| +|++.|+++++..+...+++++++|+.++++ +++|+|+
T Consensus 67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~ 144 (261)
T 4gek_A 67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVV 144 (261)
T ss_dssp HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEE
T ss_pred hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccce
Confidence 36789999999999999999998842 3389999999 9999999999988888889999999988764 5699999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+....+++ .......+++++.+.|||||.++
T Consensus 145 ~~~~l~~~-~~~~~~~~l~~i~~~LkpGG~li 175 (261)
T 4gek_A 145 LNFTLQFL-EPSERQALLDKIYQGLNPGGALV 175 (261)
T ss_dssp EESCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeeec-CchhHhHHHHHHHHHcCCCcEEE
Confidence 97665554 33455678999999999999987
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-16 Score=127.31 Aligned_cols=103 Identities=24% Similarity=0.337 Sum_probs=88.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~ 98 (306)
.++.+|||+|||+|.+++.+++.++.+|+|+|+| ++++.|+++++.+++ ++++++++|+.++. ++.++||+|++++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 5789999999999999998888888899999999 899999999999998 67999999998864 3458999999987
Q ss_pred cccccCCcchHHHHHHHHhh--cccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDK--WLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~--~L~p~G~~i 127 (306)
..+ ........++..+.+ +|+|||.++
T Consensus 122 p~~--~~~~~~~~~l~~~~~~~~L~pgG~l~ 150 (189)
T 3p9n_A 122 PYN--VDSADVDAILAALGTNGWTREGTVAV 150 (189)
T ss_dssp CTT--SCHHHHHHHHHHHHHSSSCCTTCEEE
T ss_pred CCC--cchhhHHHHHHHHHhcCccCCCeEEE
Confidence 522 123567788888888 999999997
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=131.86 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=94.1
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.+.......++.+|||+|||+|.++..+++....+|+|+|+| .|++.|+++++.+++.++++++.+|+.++++ .+
T Consensus 24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 102 (256)
T 1nkv_A 24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NE 102 (256)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SS
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CC
Confidence 344444445678899999999999999999988534499999999 8999999999999987789999999998876 58
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++....++. .+...++.++.++|||||.++
T Consensus 103 ~fD~V~~~~~~~~~---~~~~~~l~~~~r~LkpgG~l~ 137 (256)
T 1nkv_A 103 KCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIML 137 (256)
T ss_dssp CEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEE
T ss_pred CCCEEEECCChHhc---CCHHHHHHHHHHHcCCCeEEE
Confidence 99999996543333 356788999999999999987
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=131.51 Aligned_cols=114 Identities=19% Similarity=0.140 Sum_probs=96.2
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.+.+.....++.+|||+|||+|.++..+++....+|+++|+| .+++.|++++..+++.++++++.+|+.+++++++
T Consensus 49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 344444455667899999999999999999988544699999999 8999999999999988889999999999887778
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++..+.+++ .+...++.++.++|+|||.++
T Consensus 129 ~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 163 (273)
T 3bus_A 129 SFDAVWALESLHHM---PDRGRALREMARVLRPGGTVA 163 (273)
T ss_dssp CEEEEEEESCTTTS---SCHHHHHHHHHTTEEEEEEEE
T ss_pred CccEEEEechhhhC---CCHHHHHHHHHHHcCCCeEEE
Confidence 99999997553433 456889999999999999987
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=124.19 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=85.4
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIIS 96 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~iv~ 96 (306)
..+.++.+|||+|||+|.++..+++. ..+|+|+|+| +|++.|+++++.+++ +++++++++..++. ++.++||+|++
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 18 EVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp TTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred HhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEE
Confidence 34678999999999999999999998 5699999999 899999999999998 67999998887753 34578999998
Q ss_pred cccccccC-------CcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLL-------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~-------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++ ++... .......++.++.++|||||.++
T Consensus 96 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 132 (185)
T 3mti_A 96 NL-GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLA 132 (185)
T ss_dssp EE-C-----------CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred eC-CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEE
Confidence 74 22221 22344567888899999999987
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=127.98 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=91.9
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCC----eEEEEEceeeeecCC
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSN----VITVLKGKIEEIELP 87 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~ 87 (306)
.+.......++.+|||+|||+|.++..+++.+ ..+|+|+|+| .+++.|++++..+++++ +++++.+|+...+.+
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (217)
T 3jwh_A 20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR 99 (217)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc
Confidence 33333344678899999999999999999964 4699999999 89999999998888764 799999998766655
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||+|++..+.+++ .......+++.+.++|+|||.++
T Consensus 100 ~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li 138 (217)
T 3jwh_A 100 FHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIV 138 (217)
T ss_dssp GCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEE
T ss_pred CCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEE
Confidence 5789999997655544 44456789999999999999876
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=131.31 Aligned_cols=110 Identities=19% Similarity=0.085 Sum_probs=93.4
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
.+.....+.++.+|||||||+|.++..+++. | .+|+|+|+| ++++.|++++..++++++++++.+|+.++ .++|
T Consensus 63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~f 138 (302)
T 3hem_A 63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPV 138 (302)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCC
T ss_pred HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCc
Confidence 3444456778999999999999999999996 7 599999999 89999999999999988899999999876 4899
Q ss_pred eEEEEcccccccCC------cchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++..+.+++.. ...+..++..+.++|+|||.++
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 180 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRML 180 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEE
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEE
Confidence 99999765444422 2566889999999999999998
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=133.49 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=93.6
Q ss_pred HHhccc-CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 15 IYQNKF-LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 15 i~~~~~-~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
+..... +.++.+|||+|||+|.++..+++....+|+|+|++ .+++.|+++++.+++.++++++.+|+.+++++.++||
T Consensus 108 l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 187 (312)
T 3vc1_A 108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVT 187 (312)
T ss_dssp HHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEE
T ss_pred HHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEe
Confidence 444444 67889999999999999999998623489999999 8999999999999998889999999999887778999
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|++..+.+++ ....++.++.++|+|||.++
T Consensus 188 ~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~ 218 (312)
T 3vc1_A 188 ASWNNESTMYV----DLHDLFSEHSRFLKVGGRYV 218 (312)
T ss_dssp EEEEESCGGGS----CHHHHHHHHHHHEEEEEEEE
T ss_pred EEEECCchhhC----CHHHHHHHHHHHcCCCcEEE
Confidence 99997654444 27889999999999999987
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=127.21 Aligned_cols=105 Identities=21% Similarity=0.327 Sum_probs=90.7
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++ +|||+|||+|.++..+++.+..+|+++|++ .+++.|+++++.+++.++++++.+|+.+++++.++||+|++.
T Consensus 40 ~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 118 (219)
T 3dlc_A 40 FGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSR 118 (219)
T ss_dssp HCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEE
T ss_pred cCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEEC
Confidence 334445 999999999999999998744599999999 899999999999998778999999999988877899999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+++ .....++.++.++|+|||.++
T Consensus 119 ~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 145 (219)
T 3dlc_A 119 GSVFFW---EDVATAFREIYRILKSGGKTY 145 (219)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred chHhhc---cCHHHHHHHHHHhCCCCCEEE
Confidence 654433 567889999999999999987
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=129.92 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=89.9
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++.+|||+|||+|.++..+++.+. +|+++|+| +|++.|+++++.++++ +++++.+|++++++++++||+|++.
T Consensus 33 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~fD~V~~~ 110 (260)
T 1vl5_A 33 AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERFHIVTCR 110 (260)
T ss_dssp HTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCEEEEEEE
T ss_pred hCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCCCCEEEEEEh
Confidence 3456889999999999999999999765 99999999 8999999999988875 6999999999988887899999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+++ .+...++.++.++|+|||.++
T Consensus 111 ~~l~~~---~d~~~~l~~~~r~LkpgG~l~ 137 (260)
T 1vl5_A 111 IAAHHF---PNPASFVSEAYRVLKKGGQLL 137 (260)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhHhc---CCHHHHHHHHHHHcCCCCEEE
Confidence 554433 567889999999999999987
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=126.66 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCC----eEEEEEceeeeecCCCceeeEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSN----VITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~~D~i 94 (306)
..++.+|||+|||+|.++..+++.+ ..+|+|+|+| .+++.|++++..+++++ +++++.+|+...+.+.++||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 4678899999999999999999865 3699999999 89999999998887764 7999999997766656799999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++..+.+++ ....+..++..+.++|+|||.++
T Consensus 107 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i 138 (219)
T 3jwg_A 107 TVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIV 138 (219)
T ss_dssp EEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEE
Confidence 997654544 33355789999999999999776
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=129.85 Aligned_cols=109 Identities=21% Similarity=0.334 Sum_probs=90.2
Q ss_pred ccCC-CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEE
Q 021852 19 KFLF-KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 94 (306)
Q Consensus 19 ~~~~-~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~i 94 (306)
.... ++.+|||+|||+|.+++.+++.+..+|+|+|++ .+++.|+++++.+++.++++++++|+.++. ++.++||+|
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 3455 789999999999999999999876699999999 899999999999999888999999998875 446899999
Q ss_pred EEccccccc-----CC------------cchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFL-----LF------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~-----~~------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++..+.. .. ...+..++..+.++|+|||+++
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~ 173 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKAN 173 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEE
Confidence 998752221 00 1235678899999999999987
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=126.65 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=85.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeecC--CCce-eeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIEL--PVTK-VDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~-~D~iv~~ 97 (306)
++.+|||+|||+|.+++.++..++.+|+|+|+| +|++.|+++++.+++. ++++++.+|+.++.. +.++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 678999999999999998888777899999999 8999999999999984 579999999987642 2468 9999998
Q ss_pred ccccccCCcchHHHHHHHH--hhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYAR--DKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~--~~~L~p~G~~i 127 (306)
+. +. ......++..+ .++|+|||.++
T Consensus 133 ~~-~~---~~~~~~~l~~~~~~~~LkpgG~l~ 160 (201)
T 2ift_A 133 PP-FH---FNLAEQAISLLCENNWLKPNALIY 160 (201)
T ss_dssp CC-SS---SCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CC-CC---CccHHHHHHHHHhcCccCCCcEEE
Confidence 75 22 35667777777 67899999987
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-15 Score=129.76 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=92.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-CCceeeEEEEc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISE 97 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~iv~~ 97 (306)
.+.++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|++++...++..+++++.+|+.+.++ +.++||+|++.
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 357889999999999999999888877799999999 8999999999988887789999999988776 46899999997
Q ss_pred cccccc-CCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFL-LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~-~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...++. .+......++..+.++|+|||.++
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 171 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFI 171 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 543331 345677889999999999999987
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-16 Score=128.61 Aligned_cols=106 Identities=12% Similarity=-0.033 Sum_probs=84.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcC-----------CCCeEEEEEceeeeecCC
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANG-----------FSNVITVLKGKIEEIELP 87 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~-----------~~~~v~~~~~d~~~~~~~ 87 (306)
.+.++.+|||+|||+|..+..+++.|. +|+|+|+| .|++.|+++..... ...+++++++|+.+++++
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999999876 99999999 89999988754210 024689999999988754
Q ss_pred C-ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 V-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~-~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ++||+|++....+++ .......++.++.++|||||+++
T Consensus 98 ~~~~fD~v~~~~~l~~l-~~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp HHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEE
T ss_pred cCCCEEEEEECcchhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 3 689999986543433 34456678999999999999843
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-15 Score=130.49 Aligned_cols=104 Identities=21% Similarity=0.202 Sum_probs=91.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
...++.+|||+|||+|.++..+++. |. +|+|+|+| .+++.|+++++..++.++++++.+|+.++++++++||+|++.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence 5678899999999999999999885 55 99999999 899999999999998888999999999988877899999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+++ .+...++.++.++|||||.++
T Consensus 158 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 184 (297)
T 2o57_A 158 DAFLHS---PDKLKVFQECARVLKPRGVMA 184 (297)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred chhhhc---CCHHHHHHHHHHHcCCCeEEE
Confidence 554433 457889999999999999987
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=125.40 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=93.4
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
.+...+.......++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|++++...+ +++++.+|+.++. +.
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-CS
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-CC
Confidence 4555565555566788999999999999999999864 99999999 89999998876543 6999999999887 56
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++||+|++..+.+++.....+..++..+.++|+|||.++
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~ 151 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 899999998666666544556778999999999999997
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=121.93 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=87.3
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
.+.......++.+|||+|||+|.+++.+++. ..+|+|+|++ ++++.|+++++.++++++++++.+|+.+......+||
T Consensus 46 ~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D 124 (204)
T 3njr_A 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPE 124 (204)
T ss_dssp HHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCS
T ss_pred HHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCC
Confidence 3333455678899999999999999999998 5599999999 8999999999999997689999999988432335899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|++... + ..+ ++..+.++|+|||+++
T Consensus 125 ~v~~~~~---~----~~~-~l~~~~~~LkpgG~lv 151 (204)
T 3njr_A 125 AVFIGGG---G----SQA-LYDRLWEWLAPGTRIV 151 (204)
T ss_dssp EEEECSC---C----CHH-HHHHHHHHSCTTCEEE
T ss_pred EEEECCc---c----cHH-HHHHHHHhcCCCcEEE
Confidence 9998641 1 345 8889999999999997
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=133.56 Aligned_cols=116 Identities=11% Similarity=0.118 Sum_probs=96.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHH--HcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA--KAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a--~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
..|.+.+. ..+.++.+|||+|||+|.++..++ ..+..+|+++|+| .+++.|++++..+++.++++++.+|+.+++
T Consensus 106 ~~~~~~l~--~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (305)
T 3ocj_A 106 GHFRRALQ--RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD 183 (305)
T ss_dssp HHHHHHHH--HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC
T ss_pred HHHHHHHH--hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC
Confidence 33666664 446789999999999999999885 3446699999999 899999999999998888999999999988
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++ ++||+|++..+.+++........++..+.++|+|||.++
T Consensus 184 ~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 224 (305)
T 3ocj_A 184 TR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224 (305)
T ss_dssp CC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 77 999999997665555444455568999999999999998
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-15 Score=126.27 Aligned_cols=106 Identities=23% Similarity=0.321 Sum_probs=89.6
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.......++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|+++.. ..+++++.+|+.+++++.++||+
T Consensus 36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCeEE
Confidence 44444455789999999999999999999887799999999 89999988754 35799999999988877789999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..+.+++ .+...++..+.++|+|||.++
T Consensus 112 v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 142 (253)
T 3g5l_A 112 VLSSLALHYI---ASFDDICKKVYINLKSSGSFI 142 (253)
T ss_dssp EEEESCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEchhhhhh---hhHHHHHHHHHHHcCCCcEEE
Confidence 9997654433 567889999999999999987
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=121.96 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCceeeEEEEcc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~iv~~~ 98 (306)
..++.+|||+|||+|.++..+++.+..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. +...++||+|++++
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 56788999999999999999999877899999999 89999999999999877899999999873 32236799999986
Q ss_pred cccccCCcchHHHHHHHHh--hcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARD--KWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~--~~L~p~G~~i 127 (306)
..+ ....+.++..+. ++|+|||.++
T Consensus 109 ~~~----~~~~~~~~~~l~~~~~L~~gG~l~ 135 (177)
T 2esr_A 109 PYA----KETIVATIEALAAKNLLSEQVMVV 135 (177)
T ss_dssp SSH----HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCC----cchHHHHHHHHHhCCCcCCCcEEE
Confidence 421 134555666665 8999999987
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=120.64 Aligned_cols=108 Identities=20% Similarity=0.262 Sum_probs=89.6
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
..+.......++.+|||+|||+|.++..+++.+ ..+|+++|.+ ++++.|+++++.+++ ++++++.+|+.+.....++
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCC
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCC
Confidence 334444567789999999999999999999965 5699999999 899999999999998 5799999998655333368
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|++.... .....++..+.++|+|||+++
T Consensus 109 ~D~i~~~~~~------~~~~~~l~~~~~~LkpgG~l~ 139 (204)
T 3e05_A 109 PDRVFIGGSG------GMLEEIIDAVDRRLKSEGVIV 139 (204)
T ss_dssp CSEEEESCCT------TCHHHHHHHHHHHCCTTCEEE
T ss_pred CCEEEECCCC------cCHHHHHHHHHHhcCCCeEEE
Confidence 9999987532 266788999999999999997
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-15 Score=121.61 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=88.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 95 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~iv 95 (306)
.+.++.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|+++++.+++.++++++.+|+.++. ...++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 4678899999999999999999885 45699999999 899999999999998778999999998875 4458999999
Q ss_pred Eccccc------ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGY------FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~------~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++... ..........++..+.++|+|||.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~ 136 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEE
Confidence 985310 11122245568899999999999987
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=126.81 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee--cCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~iv~~ 97 (306)
..++.+|||+|||+|.++..+++.+..+|+++|.| .|++.|+++.+.++ .+++++.+|+.++ ++++++||+|+++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence 45788999999999999999988766699999999 89999999887766 4799999999988 6777899999993
Q ss_pred ccc--cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMG--YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~--~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
... ...........++.++.++|||||+++
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~ 167 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 167 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEE
Confidence 221 111122345577899999999999987
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=121.92 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
+.+.+.+.+... ..++.+|||+|||+|.++..+++.+. +|+++|+| ++++.|+++.+.++ .+++++.+|+.+++
T Consensus 24 ~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~ 98 (227)
T 1ve3_A 24 RIETLEPLLMKY--MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS 98 (227)
T ss_dssp HHHHHHHHHHHS--CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC
T ss_pred HHHHHHHHHHHh--cCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC
Confidence 344455555533 34588999999999999999999876 99999999 89999999988877 46999999998877
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++.++||+|++..+.+ ..+......++..+.++|+|||.++
T Consensus 99 ~~~~~~D~v~~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~ 139 (227)
T 1ve3_A 99 FEDKTFDYVIFIDSIV-HFEPLELNQVFKEVRRVLKPSGKFI 139 (227)
T ss_dssp SCTTCEEEEEEESCGG-GCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCcEEEEEEcCchH-hCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 7668999999975422 2344567789999999999999987
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=130.60 Aligned_cols=94 Identities=21% Similarity=0.147 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
..+.+|||||||+|.++..+++.+. +|+|+|+| +|++.|++. .++++++++++++++++++||+|++....
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~ 109 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPASVDVAIAAQAM 109 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSSCEEEEEECSCC
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCCcccEEEEeeeh
Confidence 4567999999999999999999865 99999999 898877532 46999999999999988999999997654
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++. +.+.++.++.|+|||||+++
T Consensus 110 h~~----~~~~~~~e~~rvLkpgG~l~ 132 (257)
T 4hg2_A 110 HWF----DLDRFWAELRRVARPGAVFA 132 (257)
T ss_dssp TTC----CHHHHHHHHHHHEEEEEEEE
T ss_pred hHh----hHHHHHHHHHHHcCCCCEEE
Confidence 433 46778999999999999986
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=127.09 Aligned_cols=102 Identities=26% Similarity=0.292 Sum_probs=88.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++...++.++++++.+|+.+++ ++.++||+|++..+
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3468999999999999999999865 99999999 899999999999888778999999999886 56689999999755
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++ .+...++.++.++|+|||.++
T Consensus 146 l~~~---~~~~~~l~~~~~~LkpgG~l~ 170 (285)
T 4htf_A 146 LEWV---ADPRSVLQTLWSVLRPGGVLS 170 (285)
T ss_dssp GGGC---SCHHHHHHHHHHTEEEEEEEE
T ss_pred hhcc---cCHHHHHHHHHHHcCCCeEEE
Confidence 4433 566889999999999999987
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=118.90 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=89.6
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++.+|||+|||+|.++..+++.+. +|+++|.| .+++.|++++..++++ +++++.+|+.++++ .++||+|++.
T Consensus 28 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~~D~v~~~ 104 (199)
T 2xvm_A 28 VKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF-DRQYDFILST 104 (199)
T ss_dssp TTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC-CCCEEEEEEE
T ss_pred hhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC-CCCceEEEEc
Confidence 4455788999999999999999999865 99999999 8999999999888874 59999999998876 5899999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+++ .......++..+.++|+|||.++
T Consensus 105 ~~l~~~-~~~~~~~~l~~~~~~L~~gG~l~ 133 (199)
T 2xvm_A 105 VVLMFL-EAKTIPGLIANMQRCTKPGGYNL 133 (199)
T ss_dssp SCGGGS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred chhhhC-CHHHHHHHHHHHHHhcCCCeEEE
Confidence 654544 34477889999999999999976
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-15 Score=124.84 Aligned_cols=104 Identities=21% Similarity=0.332 Sum_probs=90.6
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++.+|||+|||+|.++..+++.+. +|+++|++ .+++.+++++..++++ +++++.+|++++++++++||+|++.
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~ 94 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDDSFDIITCR 94 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCCCCcEEEEEEC
Confidence 4467899999999999999999999765 99999999 8999999999888875 6999999999988777899999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+++ .+...++.++.++|+|||.++
T Consensus 95 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 121 (239)
T 1xxl_A 95 YAAHHF---SDVRKAVREVARVLKQDGRFL 121 (239)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred Cchhhc---cCHHHHHHHHHHHcCCCcEEE
Confidence 543333 467889999999999999987
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-15 Score=130.09 Aligned_cols=120 Identities=18% Similarity=0.123 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC---CeEEEEEceee
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS---NVITVLKGKIE 82 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~---~~v~~~~~d~~ 82 (306)
|.+.+.+.+.......++.+|||+|||+|.++..+++.|+ +|+|+|+| .|++.|++++...+.. .++.+..+++.
T Consensus 41 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~ 119 (293)
T 3thr_A 41 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL 119 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred hHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence 4566667776655566889999999999999999999877 99999999 8999998887544332 35788999998
Q ss_pred eec---CCCceeeEEEEc-ccccccCC----cchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE---LPVTKVDIIISE-WMGYFLLF----ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~---~~~~~~D~iv~~-~~~~~~~~----~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++ ++.++||+|++. .+.+++.. ......++..+.++|+|||.++
T Consensus 120 ~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (293)
T 3thr_A 120 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172 (293)
T ss_dssp GHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred hCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEE
Confidence 876 667899999995 33333333 3458889999999999999997
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=125.21 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=90.3
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
.+.......++.+|||+|||+|.++..+++.+..+|+++|+| .+++.|++++..+ .+++++.+|+.+++++.++||
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCCeE
Confidence 333344556789999999999999999988777789999999 8999999887544 479999999998877778999
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|++..+.+++ .......++..+.++|+|||.++
T Consensus 161 ~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 194 (254)
T 1xtp_A 161 LIVIQWTAIYL-TDADFVKFFKHCQQALTPNGYIF 194 (254)
T ss_dssp EEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcchhhhC-CHHHHHHHHHHHHHhcCCCeEEE
Confidence 99997654443 22457889999999999999987
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=126.77 Aligned_cols=114 Identities=19% Similarity=0.277 Sum_probs=96.2
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
.+.+.+.......++.+|||+|||+|.++..+++.+ ..+|+++|++ .+++.|++++..++++ +++++.+|+.+++++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFE 102 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCC
Confidence 445555555566789999999999999999999864 5699999999 8999999999998885 699999999998877
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||+|++..+.+++ .+...++..+.++|+|||.++
T Consensus 103 ~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 139 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHL---QSPEEALKSLKKVLKPGGTIT 139 (276)
T ss_dssp TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred CCCeeEEEEechhhhc---CCHHHHHHHHHHHcCCCcEEE
Confidence 7899999997654433 456789999999999999987
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-15 Score=129.74 Aligned_cols=99 Identities=20% Similarity=0.158 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.+++.+++.|+.+|+|+|.| .+++.|+++++.|++.++++++++|+.++.. .++||+|+++++
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 46789999999999999999999887789999999 8999999999999998789999999998865 589999999865
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ...++..+.++|+|||.++
T Consensus 202 ~~-------~~~~l~~~~~~LkpgG~l~ 222 (278)
T 2frn_A 202 VR-------THEFIPKALSIAKDGAIIH 222 (278)
T ss_dssp SS-------GGGGHHHHHHHEEEEEEEE
T ss_pred hh-------HHHHHHHHHHHCCCCeEEE
Confidence 21 1456667789999999997
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-15 Score=123.63 Aligned_cols=106 Identities=26% Similarity=0.277 Sum_probs=91.4
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
.....++.+|||+|||+|.++..+++.+ ..+|+++|.+ .+++.|++++..++++ +++++.+|+.+++++.++||+|
T Consensus 32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v 110 (219)
T 3dh0_A 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDFI 110 (219)
T ss_dssp HHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCEEEE
T ss_pred HhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCeeEE
Confidence 3456788999999999999999999864 4599999999 8999999999998885 6999999999988777899999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++..+.+++ .+...++..+.++|+|||.++
T Consensus 111 ~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 140 (219)
T 3dh0_A 111 FMAFTFHEL---SEPLKFLEELKRVAKPFAYLA 140 (219)
T ss_dssp EEESCGGGC---SSHHHHHHHHHHHEEEEEEEE
T ss_pred Eeehhhhhc---CCHHHHHHHHHHHhCCCeEEE
Confidence 997554433 467889999999999999987
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-15 Score=125.97 Aligned_cols=105 Identities=20% Similarity=0.225 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~ 97 (306)
..+|.+|||||||+|..+..+++.+..+|++||++ +|++.|+++.+..+. ++.++.+++.++. ++.++||.|+.+
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEe
Confidence 36789999999999999999998766689999999 899999998877764 6899999987653 567899999986
Q ss_pred cccc--ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGY--FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~--~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.. ...+..+.+.++.++.|+|||||+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~ 167 (236)
T 3orh_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 167 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred eeecccchhhhcchhhhhhhhhheeCCCCEEE
Confidence 5432 23344577889999999999999987
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=127.09 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHc-CCCCeEEEEEceeeeecCCC------cee
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEAN-GFSNVITVLKGKIEEIELPV------TKV 91 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~------~~~ 91 (306)
.++.+|||+|||+|.++..+++ .+..+|+|+|+| .+++.|+++++.+ +...+++++.+|+++++++. ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 5789999999999999999997 356799999999 8999999998887 44568999999999987665 799
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++..+.+++ +...++..+.++|+|||.++
T Consensus 115 D~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~ 146 (299)
T 3g5t_A 115 DMITAVECAHWF----DFEKFQRSAYANLRKDGTIA 146 (299)
T ss_dssp EEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEE
T ss_pred eEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEE
Confidence 999997654443 67889999999999999987
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-14 Score=122.35 Aligned_cols=104 Identities=22% Similarity=0.309 Sum_probs=86.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|++++..++. +++++.+|+.+++++ ++||+|++..
T Consensus 38 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~v~~~~ 113 (252)
T 1wzn_A 38 AKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDAVTMFF 113 (252)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCEEEEEECS
T ss_pred cccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC-CCccEEEEcC
Confidence 345678999999999999999999865 99999999 899999999988776 589999999988765 7899999852
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.............++..+.++|+|||.++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li 142 (252)
T 1wzn_A 114 STIMYFDEEDLRKLFSKVAEALKPGGVFI 142 (252)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CchhcCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 21222344567889999999999999987
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-15 Score=121.88 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~iv~~~~~ 100 (306)
++.+|||+|||+|.+++.+++.++.+|+++|+| .|++.|+++++.+++ ++++++++|+.+. +.+.++||+|++++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 678999999999999999888777799999999 899999999999998 5799999999874 334578999999875
Q ss_pred cccCCcchHHHHHHHHh--hcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARD--KWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~--~~L~p~G~~i 127 (306)
+. ......++..+. ++|+|||+++
T Consensus 132 ~~---~~~~~~~l~~l~~~~~L~pgG~l~ 157 (202)
T 2fpo_A 132 FR---RGLLEETINLLEDNGWLADEALIY 157 (202)
T ss_dssp SS---TTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred CC---CCcHHHHHHHHHhcCccCCCcEEE
Confidence 22 245556666664 4699999987
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=125.28 Aligned_cols=111 Identities=22% Similarity=0.189 Sum_probs=92.0
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
.+.+.......++.+|||+|||+|.++..+++ .|. +|+|+|+| ++++.|++++...++.++++++.+|+.++ + +
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~-~ 128 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--D-E 128 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--C-C
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC--C-C
Confidence 34444455677889999999999999999985 665 99999999 89999999999888877899999999765 3 7
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++..+.+++ .......++.++.++|||||.++
T Consensus 129 ~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 165 (287)
T 1kpg_A 129 PVDRIVSIGAFEHF-GHERYDAFFSLAHRLLPADGVML 165 (287)
T ss_dssp CCSEEEEESCGGGT-CTTTHHHHHHHHHHHSCTTCEEE
T ss_pred CeeEEEEeCchhhc-ChHHHHHHHHHHHHhcCCCCEEE
Confidence 89999997554433 22567889999999999999987
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-15 Score=119.97 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----CCceeeEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~D~iv 95 (306)
..++.+|||+|||+|.++..+++.++.+|+++|++ .+++.|+++++.+++.++++++++|+.+... +.++||+|+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 45788999999999999999888877899999999 8999999999999987789999999977431 247899999
Q ss_pred EcccccccCCcchHHHHHHHH--hhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYAR--DKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~--~~~L~p~G~~i 127 (306)
+++. +. ....+..+..+ .++|+|||.++
T Consensus 122 ~~~~-~~---~~~~~~~~~~l~~~~~L~~gG~l~ 151 (187)
T 2fhp_A 122 LDPP-YA---KQEIVSQLEKMLERQLLTNEAVIV 151 (187)
T ss_dssp ECCC-GG---GCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred ECCC-CC---chhHHHHHHHHHHhcccCCCCEEE
Confidence 9865 22 23344555555 78999999987
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=123.00 Aligned_cols=108 Identities=20% Similarity=0.194 Sum_probs=90.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
.+.++.+|||+|||+|.+++.+++.| +.+|+|+|++ .+++.|+++++.+++.++++++.+|..+...+.++||+|+..
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia 97 (230)
T 3lec_A 18 YVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC 97 (230)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred hCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence 35678999999999999999999976 5689999999 899999999999999989999999998765443479998764
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEee
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 139 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~ 139 (306)
.++ -..+..++......|+++|.+| ++|..
T Consensus 98 GmG-----g~lI~~IL~~~~~~l~~~~~lI-------lqp~~ 127 (230)
T 3lec_A 98 GMG-----GRLIADILNNDIDKLQHVKTLV-------LQPNN 127 (230)
T ss_dssp EEC-----HHHHHHHHHHTGGGGTTCCEEE-------EEESS
T ss_pred CCc-----hHHHHHHHHHHHHHhCcCCEEE-------EECCC
Confidence 332 2456778888888999999998 66654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=126.11 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=89.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++..+++ +++++.+|+.++.. .++||+|++..+
T Consensus 118 ~~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~~~ 193 (286)
T 3m70_A 118 IISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVSTVV 193 (286)
T ss_dssp HSCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEECSS
T ss_pred ccCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEccc
Confidence 34789999999999999999999876 99999999 899999999999987 69999999998776 589999999876
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++ .......++..+.++|+|||.++
T Consensus 194 ~~~~-~~~~~~~~l~~~~~~LkpgG~l~ 220 (286)
T 3m70_A 194 FMFL-NRERVPSIIKNMKEHTNVGGYNL 220 (286)
T ss_dssp GGGS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred hhhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 5544 45667889999999999999976
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=124.64 Aligned_cols=100 Identities=14% Similarity=0.276 Sum_probs=85.1
Q ss_pred ccCCCCCEEEEEcCCCcHHH-HHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILS-LFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~-~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
..+.++.+|||||||+|.++ +.+|+....+|+|+|++ +|++.|++++++.++ ++++++.+|+.+++ +++||+|++
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMV 194 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEE
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEE
Confidence 56789999999999998664 66677444599999999 999999999999999 78999999998875 589999998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
... ......+++++.+.|||||+++
T Consensus 195 ~a~------~~d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 195 AAL------AEPKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp CTT------CSCHHHHHHHHHHHCCTTCEEE
T ss_pred CCC------ccCHHHHHHHHHHHcCCCcEEE
Confidence 532 2567789999999999999997
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.3e-15 Score=124.86 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
++.+|||+|||+|.++..+++.+..+|+++|++ .+++.|++++..++. .+++++.+|+.+++++.++||+|++..+.+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 588999999999999999988776799999999 899999998876642 479999999988877767899999975544
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++ .......++..+.++|+|||.++
T Consensus 158 ~~-~~~~~~~~l~~~~~~LkpgG~l~ 182 (241)
T 2ex4_A 158 HL-TDQHLAEFLRRCKGSLRPNGIIV 182 (241)
T ss_dssp GS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hC-CHHHHHHHHHHHHHhcCCCeEEE
Confidence 33 22335688999999999999987
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-14 Score=125.63 Aligned_cols=111 Identities=16% Similarity=0.095 Sum_probs=92.8
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
.+.+.......++.+|||+|||+|.++..+++. |+ +|+++|+| ++++.|++++...++.++++++.+|+.++ + +
T Consensus 79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~-~ 154 (318)
T 2fk8_A 79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--A-E 154 (318)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--C-C
T ss_pred HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--C-C
Confidence 344444556778999999999999999999986 66 99999999 89999999999988877899999999776 3 7
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++..+.+++ .......++..+.++|+|||.++
T Consensus 155 ~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 191 (318)
T 2fk8_A 155 PVDRIVSIEAFEHF-GHENYDDFFKRCFNIMPADGRMT 191 (318)
T ss_dssp CCSEEEEESCGGGT-CGGGHHHHHHHHHHHSCTTCEEE
T ss_pred CcCEEEEeChHHhc-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 89999997554433 23577889999999999999987
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=122.22 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=90.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC----CeEEEEEceeeeecCCCceeeEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
+.++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|++++..+++. ++++++.+|+.+++++.++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 45789999999999999999999865 99999999 8999999988877762 468999999998887778999999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+..+.+++........++..+.++|+|||.++
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~ 138 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLY 138 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 97655555444445589999999999999987
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=122.70 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc-c
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW-M 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~-~ 99 (306)
.++.+|||+|||+|.++..+++.+. +|+++|+| .|++.|++++..++. +++++.+|+.+++++ ++||+|++.. +
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~~ 111 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDS 111 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-CCceEEEEcCcc
Confidence 3788999999999999999999865 89999999 899999999888775 689999999988766 8999999975 4
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++........++..+.++|+|||.++
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pgG~l~ 139 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 4444444678889999999999999987
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=125.55 Aligned_cols=104 Identities=17% Similarity=-0.044 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH----------cC------CCCeEEEEEceeeee
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA----------NG------FSNVITVLKGKIEEI 84 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~----------~~------~~~~v~~~~~d~~~~ 84 (306)
.++.+|||+|||+|..+..+|+.|. +|+|+|+| .|++.|++.... ++ ...+++++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4788999999999999999999987 99999999 899999765431 00 124699999999998
Q ss_pred cCCC-ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~-~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+. ++||+|++....+.+ .......++..+.++|||||+++
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l-~~~~~~~~l~~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAI-NPGDHDRYADIILSLLRKEFQYL 188 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhC-CHHHHHHHHHHHHHHcCCCeEEE
Confidence 7543 799999986544444 44567788999999999999985
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=124.28 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---CceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~iv~ 96 (306)
.++.+|||||||+|.+++.+|.. +..+|+++|.+ .+++.|+++++.+++.+ +++++++++++... .++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEEE
Confidence 46889999999999999999884 56799999999 89999999999999964 99999999887632 378999999
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+ ..++.++..+.++|+|||.++
T Consensus 158 ~a~-------~~~~~ll~~~~~~LkpgG~l~ 181 (249)
T 3g89_A 158 RAV-------APLCVLSELLLPFLEVGGAAV 181 (249)
T ss_dssp ESS-------CCHHHHHHHHGGGEEEEEEEE
T ss_pred CCc-------CCHHHHHHHHHHHcCCCeEEE
Confidence 643 346788999999999999987
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=130.41 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=86.7
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHH-------HHcCCC-CeEEEEEceeeeecC
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIV-------EANGFS-NVITVLKGKIEEIEL 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~-------~~~~~~-~~v~~~~~d~~~~~~ 86 (306)
....+.++.+|||||||+|.+++.+|+ .|+.+|+|||++ .+++.|++++ +.+|+. ++|+++++|+.++++
T Consensus 167 ~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~ 246 (438)
T 3uwp_A 167 DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW 246 (438)
T ss_dssp HHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHH
T ss_pred HhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcc
Confidence 335678899999999999999999886 677789999999 8999988754 445663 689999999988775
Q ss_pred CC--ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PV--TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~--~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+. ..+|+|+++.+ + +...+...+.++.+.|||||+++
T Consensus 247 ~d~~~~aDVVf~Nn~---~-F~pdl~~aL~Ei~RvLKPGGrIV 285 (438)
T 3uwp_A 247 RERIANTSVIFVNNF---A-FGPEVDHQLKERFANMKEGGRIV 285 (438)
T ss_dssp HHHHHTCSEEEECCT---T-CCHHHHHHHHHHHTTSCTTCEEE
T ss_pred ccccCCccEEEEccc---c-cCchHHHHHHHHHHcCCCCcEEE
Confidence 42 47999999864 2 23566777788889999999998
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=121.57 Aligned_cols=104 Identities=22% Similarity=0.304 Sum_probs=84.8
Q ss_pred cCCCCCEEEEEcCCCcHHHH-HHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 20 FLFKDKVVLDVGAGTGILSL-FCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~-~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
...++.+|||+|||+|.++. .+++.+. +|+|+|.| .|++.|++++..++. +++++.+|+.+++++.++||+|++.
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~ 96 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPFKDESMSFVYSY 96 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCSCTTCEEEEEEC
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCCCCCceeEEEEc
Confidence 35678999999999998744 4455554 99999999 899999999887763 5889999999887777899999996
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+++ .......++..+.++|+|||.++
T Consensus 97 ~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 125 (209)
T 2p8j_A 97 GTIFHM-RKNDVKEAIDEIKRVLKPGGLAC 125 (209)
T ss_dssp SCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ChHHhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 543433 34677889999999999999987
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=125.08 Aligned_cols=108 Identities=27% Similarity=0.323 Sum_probs=89.1
Q ss_pred HhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 16 ~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
.......++.+|||+|||+|.++..+++....+|+|+|+| .+++.|++++... .+++++.+|+.+++++.++||+|
T Consensus 48 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v 124 (266)
T 3ujc_A 48 LSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPENNFDLI 124 (266)
T ss_dssp TTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCTTCEEEE
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCCCcEEEE
Confidence 3344567889999999999999999998533499999999 8999998876544 47999999999888777899999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++..+.+++ .......++..+.++|+|||.++
T Consensus 125 ~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~ 156 (266)
T 3ujc_A 125 YSRDAILAL-SLENKNKLFQKCYKWLKPTGTLL 156 (266)
T ss_dssp EEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred eHHHHHHhc-ChHHHHHHHHHHHHHcCCCCEEE
Confidence 997543433 23678889999999999999988
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=121.86 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---CceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~iv~ 96 (306)
.++.+|||+|||+|.+++.+++ .+..+|+|+|+| .|++.|+++++.++++ +++++++|+.++..+ .++||+|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEE
Confidence 4788999999999999999987 345699999999 8999999999999986 499999999887643 478999999
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+ ..+..++..+.++|+|||.++
T Consensus 148 ~~~-------~~~~~~l~~~~~~LkpgG~l~ 171 (240)
T 1xdz_A 148 RAV-------ARLSVLSELCLPLVKKNGLFV 171 (240)
T ss_dssp ECC-------SCHHHHHHHHGGGEEEEEEEE
T ss_pred ecc-------CCHHHHHHHHHHhcCCCCEEE
Confidence 642 357789999999999999987
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=125.97 Aligned_cols=108 Identities=24% Similarity=0.240 Sum_probs=88.0
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHH---cCCCCeEEEEEceeeeec-------C
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEA---NGFSNVITVLKGKIEEIE-------L 86 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~-------~ 86 (306)
....++.+|||+|||+|.+++.+++.. ..+|+++|++ .+++.|++++.. +++.++++++++|+.+.. +
T Consensus 32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred hcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence 345678899999999999999999864 4699999999 899999999998 888778999999998872 4
Q ss_pred CCceeeEEEEcccccccC----------------CcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLL----------------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~----------------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.++||+|++++. ++.. ....+..++..+.++|+|||.++
T Consensus 112 ~~~~fD~Vv~nPP-y~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~ 167 (260)
T 2ozv_A 112 PDEHFHHVIMNPP-YNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLS 167 (260)
T ss_dssp CTTCEEEEEECCC-C---------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCcCEEEECCC-CcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEE
Confidence 4578999999964 3221 11236788999999999999986
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-14 Score=121.98 Aligned_cols=102 Identities=23% Similarity=0.259 Sum_probs=86.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
...++.+|||+|||+|.++..+++.+ .+|+|+|.| .|++.|++++ ..+ ..+++++.+|+.+++++.++||+|++..
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKI-AGV-DRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHT-TTS-CTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-hcc-CCceEEEEcccccCCCCCCCeeEEEECC
Confidence 45778999999999999999999885 499999999 8999998887 333 3579999999998887778999999975
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+++ .+...++..+.++|+|||.++
T Consensus 113 ~l~~~---~~~~~~l~~~~~~L~pgG~l~ 138 (263)
T 2yqz_A 113 LWHLV---PDWPKVLAEAIRVLKPGGALL 138 (263)
T ss_dssp CGGGC---TTHHHHHHHHHHHEEEEEEEE
T ss_pred chhhc---CCHHHHHHHHHHHCCCCcEEE
Confidence 53433 467889999999999999987
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=116.70 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=84.8
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-ecCCC
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-IELPV 88 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 88 (306)
...+.......++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++.+++.+++ ++.+|..+ ++...
T Consensus 14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 344444445678899999999999999999885 45699999999 8999999999999987678 88888754 22222
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++||+|++....+ + ..+++.+.++|+|||.++
T Consensus 93 ~~~D~i~~~~~~~---~----~~~l~~~~~~L~~gG~l~ 124 (178)
T 3hm2_A 93 DNPDVIFIGGGLT---A----PGVFAAAWKRLPVGGRLV 124 (178)
T ss_dssp SCCSEEEECC-TT---C----TTHHHHHHHTCCTTCEEE
T ss_pred CCCCEEEECCccc---H----HHHHHHHHHhcCCCCEEE
Confidence 7899999864322 1 567888889999999987
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=120.39 Aligned_cols=106 Identities=25% Similarity=0.248 Sum_probs=85.7
Q ss_pred cCCCCCEEEEEcCC-CcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEEEE
Q 021852 20 FLFKDKVVLDVGAG-TGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIIS 96 (306)
Q Consensus 20 ~~~~~~~VLDlG~G-~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~iv~ 96 (306)
...++.+|||+||| +|.++..+++.+..+|+|+|++ .+++.|+++++.+++ +++++.+|+..+. ++.++||+|++
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEE
Confidence 45688999999999 9999999999745599999999 899999999999988 6999999975442 44589999999
Q ss_pred ccccccc----------------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFL----------------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~----------------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++..+.. ........++..+.++|+|||.++
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 176 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVA 176 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEE
Confidence 8652211 111234778999999999999987
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=122.15 Aligned_cols=102 Identities=22% Similarity=0.239 Sum_probs=86.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
+.++.+|||||||+|.+++.+++.+ +.+|+|+|++ .+++.|+++++.+++.++|+++.+|..+...+.++||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 5678999999999999999999976 5689999999 8999999999999998889999999887654433699988643
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ +-..+..++......|++++.+|
T Consensus 99 m-----Gg~lI~~IL~~~~~~L~~~~~lI 122 (244)
T 3gnl_A 99 M-----GGTLIRTILEEGAAKLAGVTKLI 122 (244)
T ss_dssp E-----CHHHHHHHHHHTGGGGTTCCEEE
T ss_pred C-----chHHHHHHHHHHHHHhCCCCEEE
Confidence 3 22456778888889999999998
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=117.97 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=85.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
+.|...+... +.+..+|||+|||+|.+++.++.. +..+|+|+|+| .|++.+++++..+|..+++++ .|.....
T Consensus 37 d~fY~~~~~~--l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~- 111 (200)
T 3fzg_A 37 NDFYTYVFGN--IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV- 111 (200)
T ss_dssp HHHHHHHHHH--SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH-
T ss_pred HHHHHHHHhh--cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC-
Confidence 4445555532 466889999999999999999874 44499999999 999999999999999767777 4554443
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.++||+|++.-+.+.+ ...+..+..+.+.|+|||++|
T Consensus 112 ~~~~~DvVLa~k~LHlL---~~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 112 YKGTYDVVFLLKMLPVL---KQQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp TTSEEEEEEEETCHHHH---HHTTCCHHHHHHTCEEEEEEE
T ss_pred CCCCcChhhHhhHHHhh---hhhHHHHHHHHHHhCCCCEEE
Confidence 45899999997665555 333444557789999999998
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=119.38 Aligned_cols=103 Identities=20% Similarity=0.165 Sum_probs=85.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
.+.++.+|||||||+|.+++.+++.+ +.+|+|+|++ .+++.|+++++.+++.++++++.+|..+...+.++||+|+..
T Consensus 12 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Ivia 91 (225)
T 3kr9_A 12 FVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIA 91 (225)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEc
Confidence 35678899999999999999999976 5689999999 899999999999999889999999985432122379988864
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+ +-..+..++......|+++|.++
T Consensus 92 G~-----Gg~~i~~Il~~~~~~L~~~~~lV 116 (225)
T 3kr9_A 92 GM-----GGRLIARILEEGLGKLANVERLI 116 (225)
T ss_dssp EE-----CHHHHHHHHHHTGGGCTTCCEEE
T ss_pred CC-----ChHHHHHHHHHHHHHhCCCCEEE
Confidence 33 22346788888889999999998
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-14 Score=119.28 Aligned_cols=102 Identities=12% Similarity=0.209 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec--CCCceeeEEEE
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE--LPVTKVDIIIS 96 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~~D~iv~ 96 (306)
++.+|||+|||+|..++.+++. + ..+|+++|.+ ++++.|+++++.+++. ++++++.+|+.+.. ++.++||+|++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 3459999999999999999984 3 5699999999 8999999999999997 78999999987753 33579999998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
+. .......++..+.++|+|||+++.+.
T Consensus 136 d~------~~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 136 QV------SPMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CC------CTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred cC------cHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 64 22455678888999999999998443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=120.26 Aligned_cols=102 Identities=24% Similarity=0.300 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..++.+|||+|||+|.++..+++.. ..+|+++|+| .+++.|++++..++ +++++.+|+.+++++ ++||+|++..
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~-~~fD~v~~~~ 117 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE-EKYDMVVSAL 117 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC-SCEEEEEEES
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC-CCceEEEEeC
Confidence 5678999999999999999999863 5599999999 89999998875544 699999999998776 8999999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+++ .......++.++.++|+|||.++
T Consensus 118 ~l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 145 (234)
T 3dtn_A 118 SIHHL-EDEDKKELYKRSYSILKESGIFI 145 (234)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 54544 33344468999999999999997
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=126.25 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
+.+|.+|||+|||+|.+++.+|+.|+++|+|+|++ .+++.++++++.|++.++++++++|..++. +.+.||.|+.+++
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCC
Confidence 57899999999999999999999998899999999 899999999999999999999999998875 4488999999865
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+. ..++..+.++|++||.+.
T Consensus 202 ~~~-------~~~l~~a~~~lk~gG~ih 222 (278)
T 3k6r_A 202 VRT-------HEFIPKALSIAKDGAIIH 222 (278)
T ss_dssp SSG-------GGGHHHHHHHEEEEEEEE
T ss_pred CcH-------HHHHHHHHHHcCCCCEEE
Confidence 332 134555668899999874
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=127.78 Aligned_cols=106 Identities=18% Similarity=0.267 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCC-----------------------------
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGF----------------------------- 70 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~----------------------------- 70 (306)
.++++|||||||+|.+++.+++. +..+|+|+|++ .|++.|+++++..+.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46899999999999999999984 56799999999 899999988765442
Q ss_pred ----------------------------CCeEEEEEceeeeec-----CCCceeeEEEEcccccccC---CcchHHHHHH
Q 021852 71 ----------------------------SNVITVLKGKIEEIE-----LPVTKVDIIISEWMGYFLL---FENMLNTVLY 114 (306)
Q Consensus 71 ----------------------------~~~v~~~~~d~~~~~-----~~~~~~D~iv~~~~~~~~~---~~~~~~~~l~ 114 (306)
+++++++++|+.... +..++||+|++..+..+++ ....+..++.
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 257999999987543 3458999999976543332 3446778999
Q ss_pred HHhhcccCCeEEE
Q 021852 115 ARDKWLVDDGIVL 127 (306)
Q Consensus 115 ~~~~~L~p~G~~i 127 (306)
.+.++|+|||+++
T Consensus 205 ~~~~~LkpGG~li 217 (292)
T 3g07_A 205 RIYRHLRPGGILV 217 (292)
T ss_dssp HHHHHEEEEEEEE
T ss_pred HHHHHhCCCcEEE
Confidence 9999999999998
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.8e-14 Score=113.76 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=90.4
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeeeecCCCce
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEEIELPVTK 90 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~ 90 (306)
+.+.......++.+|||+|||+|.++..+++. ..+|+++|++ .+++.|++++..+++++ +++++.+|+.+. ++.++
T Consensus 42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~ 119 (194)
T 1dus_A 42 KILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VKDRK 119 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CTTSC
T ss_pred HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-cccCC
Confidence 33443345568899999999999999999988 5599999999 89999999999988864 599999998774 34578
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|+++...+. .......++..+.++|+|||.++
T Consensus 120 ~D~v~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~ 154 (194)
T 1dus_A 120 YNKIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIW 154 (194)
T ss_dssp EEEEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEECCCccc--chhHHHHHHHHHHHHcCCCCEEE
Confidence 999999764221 23567788999999999999987
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=120.78 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=90.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
..+.+.+.. .+.++.+|||+|||+|.++..+++.|..+|+++|++ .+++.|+++... . .+++++.+|+.+++++
T Consensus 30 ~~~~~~l~~--~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~d~~~~~~~ 104 (215)
T 2pxx_A 30 SSFRALLEP--ELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V-PQLRWETMDVRKLDFP 104 (215)
T ss_dssp HHHHHHHGG--GCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C-TTCEEEECCTTSCCSC
T ss_pred HHHHHHHHH--hcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEcchhcCCCC
Confidence 345555653 347788999999999999999999877699999999 899999887653 2 4689999999888777
Q ss_pred CceeeEEEEcccccccC------------CcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLL------------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~------------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||+|++..+.+.+. +......++.++.++|+|||.++
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 156 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFI 156 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEE
Confidence 78999999975433332 12356788999999999999987
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-14 Score=123.15 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=92.0
Q ss_pred HHHHHHHHh-cccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 9 KSYQNVIYQ-NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 9 ~~~~~ai~~-~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
..+.+.+.. .....++.+|||+|||+|.++..+++. + ..+|+|+|+| .+++.|++++...+. +++++.+|+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~ 84 (284)
T 3gu3_A 7 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI 84 (284)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTC
T ss_pred hHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhc
Confidence 344444443 345678899999999999999999985 3 3699999999 899999999877664 799999999988
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++ ++||+|++..+.+++ .+...++..+.++|+|||.++
T Consensus 85 ~~~-~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 123 (284)
T 3gu3_A 85 ELN-DKYDIAICHAFLLHM---TTPETMLQKMIHSVKKGGKII 123 (284)
T ss_dssp CCS-SCEEEEEEESCGGGC---SSHHHHHHHHHHTEEEEEEEE
T ss_pred CcC-CCeeEEEECChhhcC---CCHHHHHHHHHHHcCCCCEEE
Confidence 765 799999997653433 567889999999999999987
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-14 Score=119.42 Aligned_cols=113 Identities=23% Similarity=0.317 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
++.+.+.+... +.++.+|||+|||+|.++..+++. .+|+++|+| .+++.|++++..++ .+++++.+|+.++++
T Consensus 20 ~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~ 93 (243)
T 3d2l_A 20 YPEWVAWVLEQ--VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELEL 93 (243)
T ss_dssp HHHHHHHHHHH--SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCC
T ss_pred HHHHHHHHHHH--cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCC
Confidence 34455555533 556799999999999999999887 699999999 89999999988776 368999999988876
Q ss_pred CCceeeEEEEcc-cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~-~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ ++||+|++.. ..+++........++..+.++|+|||.++
T Consensus 94 ~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 134 (243)
T 3d2l_A 94 P-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134 (243)
T ss_dssp S-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEE
T ss_pred C-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 6 8999999863 33444455677889999999999999987
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=121.56 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=82.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.+. +|+|+|.| .+++.|+++... +++++.+|+.++ .++++||+|++..+
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~~~fD~v~~~~~ 112 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLPRRYDNIVLTHV 112 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCSSCEEEEEEESC
T ss_pred hcCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcCCcccEEEEhhH
Confidence 45778999999999999999999866 89999999 899999877532 699999999887 45689999999765
Q ss_pred ccccCCcchHHHHHHHHh-hcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARD-KWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~-~~L~p~G~~i 127 (306)
.+++ .+...++.++. ++|+|||.++
T Consensus 113 l~~~---~~~~~~l~~~~~~~LkpgG~l~ 138 (250)
T 2p7i_A 113 LEHI---DDPVALLKRINDDWLAEGGRLF 138 (250)
T ss_dssp GGGC---SSHHHHHHHHHHTTEEEEEEEE
T ss_pred HHhh---cCHHHHHHHHHHHhcCCCCEEE
Confidence 4443 46688999999 9999999987
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-14 Score=121.25 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=87.8
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CC-CEEEEEech-H------HHHHHHHHHHHcCCCCeEEEEEce---ee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECS-Q------MANMAKQIVEANGFSNVITVLKGK---IE 82 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~-~~v~~iD~s-~------~~~~a~~~~~~~~~~~~v~~~~~d---~~ 82 (306)
+.....+.++.+|||||||+|.++..+++. |. .+|+|+|+| . +++.|+++++.+++.++++++.+| ..
T Consensus 35 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 114 (275)
T 3bkx_A 35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD 114 (275)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc
Confidence 333345678999999999999999999986 43 699999999 6 899999999988887789999998 44
Q ss_pred eecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++++.++||+|++..+.+++ .....++..+.++++|||.++
T Consensus 115 ~~~~~~~~fD~v~~~~~l~~~---~~~~~~~~~~~~l~~~gG~l~ 156 (275)
T 3bkx_A 115 LGPIADQHFDRVVLAHSLWYF---ASANALALLFKNMAAVCDHVD 156 (275)
T ss_dssp CGGGTTCCCSEEEEESCGGGS---SCHHHHHHHHHHHTTTCSEEE
T ss_pred cCCCCCCCEEEEEEccchhhC---CCHHHHHHHHHHHhCCCCEEE
Confidence 455566899999997654444 334557777778888899987
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.6e-14 Score=116.74 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEcc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~ 98 (306)
++.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|++++..+++ ++++++.+|+.+++ ++.++||+|+++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 4789999999999999999885 35699999999 899999999999998 57999999998876 6667899999975
Q ss_pred cccccCCc-----chHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFE-----NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~-----~~~~~~l~~~~~~L~p~G~~i 127 (306)
........ .....++..+.++|+|||.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIH 153 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEE
Confidence 42211100 023578889999999999986
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-14 Score=120.52 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=87.3
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.......++.+|||+|||+|.++..+++.|..+|+++|+| .+++.|+++... .+++++.+|+.+++++.++||+
T Consensus 35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceE
Confidence 44444456789999999999999999999877699999999 899999876532 3689999999988776789999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..+.+++ .....++..+.++|+|||.++
T Consensus 111 v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 141 (243)
T 3bkw_A 111 AYSSLALHYV---EDVARLFRTVHQALSPGGHFV 141 (243)
T ss_dssp EEEESCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEecccccc---chHHHHHHHHHHhcCcCcEEE
Confidence 9997543333 467789999999999999987
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=116.77 Aligned_cols=98 Identities=30% Similarity=0.422 Sum_probs=85.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.+..+|+++|.+ .+++.|++++..+++.+ ++++.+|+.+. ..++||+|+++..
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~~~~fD~i~~~~~ 134 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLAD--VDGKFDLIVANIL 134 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTT--CCSCEEEEEEESC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEecccccc--CCCCceEEEECCc
Confidence 46789999999999999999999888899999999 89999999999999865 99999998764 3489999999753
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ..+..++..+.++|+|||.++
T Consensus 135 ~------~~~~~~l~~~~~~L~~gG~l~ 156 (205)
T 3grz_A 135 A------EILLDLIPQLDSHLNEDGQVI 156 (205)
T ss_dssp H------HHHHHHGGGSGGGEEEEEEEE
T ss_pred H------HHHHHHHHHHHHhcCCCCEEE
Confidence 2 345778888899999999987
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-15 Score=127.72 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=83.8
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC----------------------------
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF---------------------------- 70 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~---------------------------- 70 (306)
...++.+|||||||+|.++..++..|+.+|+|+|+| .|++.|+++++.+..
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 456788999999999999888888888789999999 899999987755421
Q ss_pred CCeEE-EEEceeeee-cC---CCceeeEEEEccccccc-CCcchHHHHHHHHhhcccCCeEEEe
Q 021852 71 SNVIT-VLKGKIEEI-EL---PVTKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 71 ~~~v~-~~~~d~~~~-~~---~~~~~D~iv~~~~~~~~-~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
..++. ++.+|+.+. ++ ..++||+|++..+.++. .....+..++..+.++|||||.++.
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~ 195 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT 195 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 01244 888898773 22 24689999997654443 2335667889999999999999983
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=126.96 Aligned_cols=105 Identities=23% Similarity=0.153 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeeeecCC----CceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEEIELP----VTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~----~~~~D~iv 95 (306)
.++.+|||+|||+|.+++.+++.|+ +|+++|+| .+++.|+++++.+++.+ +++++++|+.++... .++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4678999999999999999999888 99999999 89999999999999875 599999999875421 46899999
Q ss_pred EcccccccC-------CcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLL-------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~-------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++..+... .......++..+.++|+|||.++
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~ll 269 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 269 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEE
Confidence 987533321 12356678888899999999965
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=120.89 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
++.+|||+|||+|.++..+++.+. +|+|+|+| .+++.|++++...+...+++++.+|+.++. +.++||+|++..+.+
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 445999999999999999988655 89999999 899999999877665568999999999876 447999999976544
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++ .......++..+.++|+|||.++
T Consensus 144 ~~-~~~~~~~~l~~~~~~LkpgG~l~ 168 (235)
T 3lcc_A 144 AI-EPEMRPAWAKSMYELLKPDGELI 168 (235)
T ss_dssp TS-CGGGHHHHHHHHHHHEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHHCCCCcEEE
Confidence 44 34477889999999999999987
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=125.12 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC-----eEEEEEcee------eeec--CCC
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN-----VITVLKGKI------EEIE--LPV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-----~v~~~~~d~------~~~~--~~~ 88 (306)
++.+|||||||+|..+..+++.+..+|+|+|+| +|++.|+++....+... ++++...++ .++. ++.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 578999999999976655556566699999999 99999999887665421 267777777 3332 355
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++||+|+|..+.+++........+++++.++|||||.++
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i 166 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVL 166 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 799999986544433232345789999999999999997
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=126.72 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC--CeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|++++...++. .+++++.+|+.++++ .++||+|++...
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCc
Confidence 345999999999999999999865 89999999 8999999998877642 479999999999876 489999986422
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
............++..+.++|+|||.++
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 187 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFL 187 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 1222244467889999999999999997
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=113.10 Aligned_cols=110 Identities=24% Similarity=0.309 Sum_probs=90.6
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
.....+.......++.+|||+|||+|.++..+++.+ .+|+++|.+ .+++.++++++.+++.++++++.+|+.+. ++.
T Consensus 20 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~ 97 (192)
T 1l3i_A 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LCK 97 (192)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-HTT
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-ccc
Confidence 344455544567789999999999999999999987 799999999 89999999999998866799999998772 332
Q ss_pred -ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 -TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 -~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++||+|++.... ..+..++..+.++|+|||.++
T Consensus 98 ~~~~D~v~~~~~~------~~~~~~l~~~~~~l~~gG~l~ 131 (192)
T 1l3i_A 98 IPDIDIAVVGGSG------GELQEILRIIKDKLKPGGRII 131 (192)
T ss_dssp SCCEEEEEESCCT------TCHHHHHHHHHHTEEEEEEEE
T ss_pred CCCCCEEEECCch------HHHHHHHHHHHHhcCCCcEEE
Confidence 589999986431 245788999999999999987
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-14 Score=115.74 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
+.++ +|||+|||+|.++..+++.|. +|+++|.| .+++.|++++..++. +++++.+|+.+++++.++||+|++...
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~ 103 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIFC 103 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEECC
T ss_pred CCCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEhh
Confidence 4566 999999999999999999866 99999999 899999999888776 699999999888777789999998532
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ ........++..+.++|+|||.++
T Consensus 104 -~--~~~~~~~~~l~~~~~~L~pgG~l~ 128 (202)
T 2kw5_A 104 -H--LPSSLRQQLYPKVYQGLKPGGVFI 128 (202)
T ss_dssp -C--CCHHHHHHHHHHHHTTCCSSEEEE
T ss_pred -c--CCHHHHHHHHHHHHHhcCCCcEEE
Confidence 2 244577889999999999999987
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-14 Score=118.60 Aligned_cols=102 Identities=22% Similarity=0.263 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC--CCceeeEEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIIS 96 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~iv~ 96 (306)
..++.+|||+|||+|..+..+++.. ..+|+++|++ ++++.|+++++..++.++++++.+|+.+... ..++||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 3578899999999999999999843 5699999999 8999999999999998789999999977521 1479999998
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+. .......++..+.++|+|||+++.
T Consensus 149 ~~------~~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 149 DA------AKAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp ET------TSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred cC------cHHHHHHHHHHHHHhcCCCeEEEE
Confidence 63 234567788999999999999983
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.1e-14 Score=116.37 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=83.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
...++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|++ .+. .+++++.+|+.++ ++.++||+|++..
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~D~v~~~~ 115 (218)
T 3ou2_A 43 AGNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQWDAVFFAH 115 (218)
T ss_dssp TTTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCEEEEEEES
T ss_pred cCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCceeEEEEec
Confidence 366778999999999999999999865 99999999 89999877 454 4699999999888 5678999999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+++ .......++.++.++|+|||.++
T Consensus 116 ~l~~~-~~~~~~~~l~~~~~~L~pgG~l~ 143 (218)
T 3ou2_A 116 WLAHV-PDDRFEAFWESVRSAVAPGGVVE 143 (218)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhcC-CHHHHHHHHHHHHHHcCCCeEEE
Confidence 54444 22335789999999999999987
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-14 Score=120.46 Aligned_cols=107 Identities=22% Similarity=0.374 Sum_probs=89.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
+.+.+++... ..++.+|||+|||+|.+++.+++.|+ +|+|+|++ .+++.|+++++.+++. ++++.+|+.+. ++
T Consensus 108 ~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~ 181 (254)
T 2nxc_A 108 RLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LP 181 (254)
T ss_dssp HHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GG
T ss_pred HHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-Cc
Confidence 4455666543 56789999999999999999999888 99999999 8999999999999884 89999998764 34
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||+|+++.+. ..+..++..+.++|+|||.++
T Consensus 182 ~~~fD~Vv~n~~~------~~~~~~l~~~~~~LkpgG~li 215 (254)
T 2nxc_A 182 FGPFDLLVANLYA------ELHAALAPRYREALVPGGRAL 215 (254)
T ss_dssp GCCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCCEEEECCcH------HHHHHHHHHHHHHcCCCCEEE
Confidence 5789999997532 345678888999999999997
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=118.69 Aligned_cols=102 Identities=17% Similarity=0.245 Sum_probs=85.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-c-CC-CceeeEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-E-LP-VTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~-~~~~D~i 94 (306)
..++.+|||||||+|..+..+++. + ..+|+++|++ ++++.|+++++.+++.++++++.+|+.+. + +. .++||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 456889999999999999999985 3 5699999999 89999999999999988899999999763 2 21 2489999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+++. .......++..+.++|+|||+++.
T Consensus 141 ~~d~------~~~~~~~~l~~~~~~LkpGG~lv~ 168 (248)
T 3tfw_A 141 FIDA------DKPNNPHYLRWALRYSRPGTLIIG 168 (248)
T ss_dssp EECS------CGGGHHHHHHHHHHTCCTTCEEEE
T ss_pred EECC------chHHHHHHHHHHHHhcCCCeEEEE
Confidence 9864 234567788899999999999873
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=121.64 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc-
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW- 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~- 98 (306)
..++.+|||+|||+|.++..+++.+. +|+|+|+| .+++.|+++.. +++++.+|+.++++ .++||+|++..
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-~~~fD~v~~~~~ 119 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-GRRFSAVTCMFS 119 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-SCCEEEEEECTT
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-cCCcCEEEEcCc
Confidence 35678999999999999999999865 89999999 89999987642 58899999998876 48999999974
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+.+++........++..+.++|+|||.++.
T Consensus 120 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i 149 (263)
T 3pfg_A 120 SIGHLAGQAELDAALERFAAHVLPDGVVVV 149 (263)
T ss_dssp GGGGSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 444444445777889999999999999983
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=116.53 Aligned_cols=106 Identities=20% Similarity=0.303 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-c-CC----Ccee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-E-LP----VTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~----~~~~ 91 (306)
..++.+|||+|||+|..++.+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. + ++ .++|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 346789999999999999999984 2 5699999999 89999999999999988899999998664 2 22 1689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
|+|+++.... .......++..+ ++|+|||+++.+.
T Consensus 136 D~V~~d~~~~---~~~~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 136 DMVFLDHWKD---RYLPDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp SEEEECSCGG---GHHHHHHHHHHT-TCCCTTCEEEESC
T ss_pred EEEEEcCCcc---cchHHHHHHHhc-cccCCCeEEEEeC
Confidence 9999874221 112233456666 9999999998443
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-14 Score=117.17 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-c--CCCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-E--LPVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~~D~iv~~ 97 (306)
++.+|||||||+|.++..+|+. +...|+|+|++ ++++.|+++++.++++ +++++.+|+.++ + ++.+++|.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 5689999999999999999884 45589999999 9999999999999985 599999999885 2 567899999986
Q ss_pred ccccccCCcc-----hHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFEN-----MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~-----~~~~~l~~~~~~L~p~G~~i 127 (306)
.......... ..+.++..+.++|||||.++
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~ 147 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFH 147 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEE
Confidence 3222211111 11358889999999999986
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=125.20 Aligned_cols=116 Identities=22% Similarity=0.215 Sum_probs=93.3
Q ss_pred HHHHHHHHhcc--cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~--~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
+.+.+.+.... ...++.+|||+|||+|.++..+++.++ +|+++|+| .+++.|+++++.+++. ++++.+|+.+..
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~ 293 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTS
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhcc
Confidence 44455554322 234788999999999999999999865 99999999 8999999999999873 899999998876
Q ss_pred CCCceeeEEEEcccccccC--CcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~--~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.++||+|++++..+... .......++..+.++|+|||.++
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~ 337 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFF 337 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEE
Confidence 5557999999987644311 23567789999999999999987
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=110.80 Aligned_cols=105 Identities=23% Similarity=0.275 Sum_probs=86.7
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.+.......++.+|||+|||+|.++..+++ +..+|+++|.+ .+++.|+++++.+++ ++++++.+|+.+ .++.+
T Consensus 23 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~~~~ 99 (183)
T 2yxd_A 23 IRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-VLDKL 99 (183)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-HGGGC
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-cccCC
Confidence 334444444567889999999999999999999 56799999999 899999999999998 469999999987 55557
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++... .....++..+.++ |||.++
T Consensus 100 ~~D~i~~~~~-------~~~~~~l~~~~~~--~gG~l~ 128 (183)
T 2yxd_A 100 EFNKAFIGGT-------KNIEKIIEILDKK--KINHIV 128 (183)
T ss_dssp CCSEEEECSC-------SCHHHHHHHHHHT--TCCEEE
T ss_pred CCcEEEECCc-------ccHHHHHHHHhhC--CCCEEE
Confidence 8999999754 4567788888777 999987
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=124.73 Aligned_cols=113 Identities=15% Similarity=0.091 Sum_probs=89.1
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCC--eEEEEEceeeeecCCCc
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSN--VITVLKGKIEEIELPVT 89 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~~~~~ 89 (306)
.+.......++.+|||+|||+|.+++.+++.+ ..+|+++|.| .+++.|+++++.+++.+ +++++.+|+.+. ++.+
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-~~~~ 291 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPF 291 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-CCTT
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-CCCC
Confidence 34444455567899999999999999999964 5699999999 89999999999998753 588899998873 4567
Q ss_pred eeeEEEEccccccc--CCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~--~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++++..+.. ........++..+.++|+|||.++
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 331 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELY 331 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEE
Confidence 99999999764321 123344578899999999999987
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=119.29 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=88.4
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
.+.......++.+|||+|||+|.++..+++. + ..+|+++|.+ ++++.|+++++.+++.++++++.+|+.+. ++.++
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~ 162 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEEN 162 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCS
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCC
Confidence 3444456788999999999999999999986 4 5699999999 89999999999999987799999999866 56678
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|++++. ....++..+.++|+|||.++
T Consensus 163 ~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~ 191 (255)
T 3mb5_A 163 VDHVILDLP--------QPERVVEHAAKALKPGGFFV 191 (255)
T ss_dssp EEEEEECSS--------CGGGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECCC--------CHHHHHHHHHHHcCCCCEEE
Confidence 999998642 22456778889999999987
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=115.24 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEcc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~ 98 (306)
++.+|||||||+|.++..+|+. +..+|+|+|+| ++++.|+++++.+++. +++++.+|+.++. ++.+++|.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 5779999999999999999884 45699999999 9999999999999984 6999999998865 5668899998753
Q ss_pred cccccCC-----cchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLF-----ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~-----~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....... ....+.++..+.++|+|||.++
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~ 150 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIH 150 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEE
Confidence 2211100 0113678899999999999987
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=113.49 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=83.2
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.......++.+|||+|||+|.++..+++. ..+|+++|++ ++++.|+++++.+++. +++++.+|+.+...+.++||+
T Consensus 69 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~ 146 (210)
T 3lbf_A 69 MTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPFDA 146 (210)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEE
T ss_pred HHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCccE
Confidence 333455678999999999999999999998 4599999999 8999999999999885 699999999876545578999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++....+.+. +.+.++|+|||+++
T Consensus 147 i~~~~~~~~~~---------~~~~~~L~pgG~lv 171 (210)
T 3lbf_A 147 IIVTAAPPEIP---------TALMTQLDEGGILV 171 (210)
T ss_dssp EEESSBCSSCC---------THHHHTEEEEEEEE
T ss_pred EEEccchhhhh---------HHHHHhcccCcEEE
Confidence 99975433221 14568999999987
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.6e-14 Score=117.64 Aligned_cols=99 Identities=27% Similarity=0.354 Sum_probs=81.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.+++++. .+++++.+|+.+++.+ ++||+|++..+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~~~~~ 115 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDTIVSTYA 115 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSEEEEESC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEEEEECcc
Confidence 45788999999999999999999865 99999999 89999988754 3688999999998877 89999999765
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++ .......++.++.++|+|||.++
T Consensus 116 l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 142 (220)
T 3hnr_A 116 FHHL-TDDEKNVAIAKYSQLLNKGGKIV 142 (220)
T ss_dssp GGGS-CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred hhcC-ChHHHHHHHHHHHHhcCCCCEEE
Confidence 4443 22222348999999999999997
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.8e-14 Score=115.51 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.|+++++.+++++ ++++++|+.+.. +.++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-SEPPFDGVISRAF- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-CCSCEEEEECSCS-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-ccCCcCEEEEecc-
Confidence 5789999999999999999884 45699999999 89999999999999865 999999998865 4478999998642
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+..++..+.++|+|||.++
T Consensus 142 ------~~~~~~l~~~~~~L~~gG~l~ 162 (207)
T 1jsx_A 142 ------ASLNDMVSWCHHLPGEQGRFY 162 (207)
T ss_dssp ------SSHHHHHHHHTTSEEEEEEEE
T ss_pred ------CCHHHHHHHHHHhcCCCcEEE
Confidence 346788999999999999987
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.8e-14 Score=119.63 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=78.8
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-----C
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-----P 87 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~ 87 (306)
.+.......++.+|||+|||+|.++..+++.|+ +|+|+|.| +|++.|++++..+ ++..++.++.. .
T Consensus 36 ~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 36 NDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKEL 107 (261)
T ss_dssp HHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGG
T ss_pred HHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeeccccccccc
Confidence 344445677899999999999999999999875 99999999 8999999887544 23334433322 1
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||+|+++.+.+.+ .......++..+.++| |||+++
T Consensus 108 ~~~fD~Vv~~~~l~~~-~~~~~~~~l~~l~~lL-PGG~l~ 145 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRF-TTEEARRACLGMLSLV-GSGTVR 145 (261)
T ss_dssp TTCCSEEEEESCGGGS-CHHHHHHHHHHHHHHH-TTSEEE
T ss_pred CCCccEEEEhhhhHhC-CHHHHHHHHHHHHHhC-cCcEEE
Confidence 3689999997654433 3345677888899999 999987
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=126.14 Aligned_cols=104 Identities=28% Similarity=0.372 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHc-----C-CC-CeEEEEEceeeee------
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEAN-----G-FS-NVITVLKGKIEEI------ 84 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~-----~-~~-~~v~~~~~d~~~~------ 84 (306)
..++.+|||+|||+|.++..+++. ...+|+|+|+| .+++.|+++++.+ | +. .+++++.+|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457899999999999999999884 34599999999 8999999988765 3 22 5799999999887
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.++||+|+++.+.+++ .+...++.++.++|||||.++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~ 200 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELY 200 (383)
T ss_dssp CCCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcC---CCHHHHHHHHHHHcCCCCEEE
Confidence 6777899999998664443 567889999999999999987
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=117.42 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=84.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
+.++.+|||+|||+|.++..+++.|. +|+|+|++ .+++.++++. ...+++++.+|+.+++++.++||+|++..+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 125 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINS 125 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcCh
Confidence 45788999999999999999999866 99999999 8999887763 225699999999998877789999999654
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++ ......++..+.++|+|||.++
T Consensus 126 l~~---~~~~~~~l~~~~~~L~pgG~l~ 150 (242)
T 3l8d_A 126 LEW---TEEPLRALNEIKRVLKSDGYAC 150 (242)
T ss_dssp TTS---SSCHHHHHHHHHHHEEEEEEEE
T ss_pred Hhh---ccCHHHHHHHHHHHhCCCeEEE
Confidence 333 3567789999999999999987
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=116.81 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=82.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee----ecCCCceee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE----IELPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~D 92 (306)
..+.++.+|||+|||+|.++..+++. |..+|+|+|.| .+++.|+++++.+ +++.++.+|+.+ .+++ ++||
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~~~D 145 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV-EKVD 145 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-CCEE
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-ccEE
Confidence 44668899999999999999999985 66799999999 8999998887655 469999999987 5555 7899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+.+. ........++..+.++|+|||.++
T Consensus 146 ~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~ 175 (230)
T 1fbn_A 146 VIYEDV-----AQPNQAEILIKNAKWFLKKGGYGM 175 (230)
T ss_dssp EEEECC-----CSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEec-----CChhHHHHHHHHHHHhCCCCcEEE
Confidence 999643 223345677889999999999987
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.9e-14 Score=115.40 Aligned_cols=96 Identities=24% Similarity=0.285 Sum_probs=82.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
+.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|+++. .+++++.+|+.+++++.++||+|++..+.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhc
Confidence 78999999999999999999866 99999999 8999998762 3589999999998877789999999755444
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ .......++.++.++|+|||.++
T Consensus 115 ~-~~~~~~~~l~~~~~~L~pgG~l~ 138 (203)
T 3h2b_A 115 M-GPGELPDALVALRMAVEDGGGLL 138 (203)
T ss_dssp C-CTTTHHHHHHHHHHTEEEEEEEE
T ss_pred C-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 3 23477889999999999999987
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-13 Score=117.22 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=89.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
+...+.+..... .++.+|||+|||+|.++..+++ .+..+|+|+|+| .+++.|+++++.++++ +++++++|+.+. +
T Consensus 96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~-~ 172 (276)
T 2b3t_A 96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA-L 172 (276)
T ss_dssp HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG-G
T ss_pred HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh-c
Confidence 444444443332 5678999999999999999986 456699999999 8999999999999985 699999999774 3
Q ss_pred CCceeeEEEEcccccccC----------Cc------------chHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLL----------FE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~----------~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.++||+|++++...... ++ .....++..+.++|+|||.++
T Consensus 173 ~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~ 235 (276)
T 2b3t_A 173 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLL 235 (276)
T ss_dssp TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 457899999986422110 11 245678888999999999987
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=125.79 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeeeec--C--CCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEEIE--L--PVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~--~--~~~~~D~iv 95 (306)
.++.+|||+|||+|.+++.+|+.|+++|+++|.| .+++.|+++++.|++.+ +++++.+|+.+.. + ...+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 5788999999999999999999888899999999 89999999999999975 7999999997742 1 235899999
Q ss_pred Eccccccc---CCc---chHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFL---LFE---NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~---~~~---~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.-+.. ... ..+..++..+.++|+|||.++
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~ 328 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLII 328 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 98754311 111 234557777889999999987
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=121.56 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcC------CCCeEEEEEceeeeec----CC--C
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANG------FSNVITVLKGKIEEIE----LP--V 88 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~----~~--~ 88 (306)
.++.+|||+|||+|.++..+++.+..+|+++|+| .|++.|+++....+ ...+++++.+|+.+++ ++ .
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 4778999999999999999988767799999999 89999998876542 2247999999998875 42 3
Q ss_pred ceeeEEEEccccccc-CCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~-~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++||+|++....+++ ........++..+.++|+|||.++
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li 152 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFI 152 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 589999997654444 344567789999999999999997
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=114.44 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=81.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
+.++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++ +++++.+++.+++ +.++||+|++..+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~ 111 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHAC 111 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECSC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecCc
Confidence 56788999999999999999999865 99999999 8999998876 2567888988887 5689999999765
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++ .......++.++.++|+|||.++
T Consensus 112 l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 138 (211)
T 3e23_A 112 LLHV-PRDELADVLKLIWRALKPGGLFY 138 (211)
T ss_dssp GGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhc-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 4443 23477889999999999999987
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-14 Score=112.73 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CC--CceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LP--VTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~--~~~~D~iv~~ 97 (306)
++.+|||+|||+|.++..+++.+. +|+|+|.+ .+++.|+++++.+++ +++++++|+.+.. .+ .++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 788999999999999999999876 49999999 899999999998887 6999999987742 11 2479999998
Q ss_pred ccccccCCcchHHHHHHHHh--hcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARD--KWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~--~~L~p~G~~i 127 (306)
+..+ ...+.++..+. ++|+|||.++
T Consensus 118 ~~~~-----~~~~~~~~~~~~~~~L~~gG~~~ 144 (171)
T 1ws6_A 118 PPYA-----MDLAALFGELLASGLVEAGGLYV 144 (171)
T ss_dssp CCTT-----SCTTHHHHHHHHHTCEEEEEEEE
T ss_pred CCCc-----hhHHHHHHHHHhhcccCCCcEEE
Confidence 6522 22334445554 9999999987
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=113.02 Aligned_cols=99 Identities=25% Similarity=0.260 Sum_probs=77.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----cCCCceeeE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVDI 93 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~D~ 93 (306)
.+.++.+|||+|||+|.++..+++. |..+|+|+|+| .|++.+.+.++.. +++.++.+|+... +++ ++||+
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD~ 129 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVDL 129 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-cceeE
Confidence 4568899999999999999988884 44599999999 7887766665543 3588888888764 334 78999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++.. .......++.++.++|||||.++
T Consensus 130 V~~~~~-----~~~~~~~~l~~~~r~LkpgG~l~ 158 (210)
T 1nt2_A 130 IYQDIA-----QKNQIEILKANAEFFLKEKGEVV 158 (210)
T ss_dssp EEECCC-----STTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEecc-----ChhHHHHHHHHHHHHhCCCCEEE
Confidence 999732 22344556888999999999987
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=118.18 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee--cCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~iv~~ 97 (306)
+.++.+|||||||+|.++..+++.|. +|+|+|+| ++++.|+++ ++++.+|+.+. +++.++||+|++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 46779999999999999999999866 79999999 899888764 67888898875 5667899999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+++ ....+..++..+.++|||||.++
T Consensus 109 ~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 137 (240)
T 3dli_A 109 HFVEHL-DPERLFELLSLCYSKMKYSSYIV 137 (240)
T ss_dssp SCGGGS-CGGGHHHHHHHHHHHBCTTCCEE
T ss_pred CchhhC-CcHHHHHHHHHHHHHcCCCcEEE
Confidence 654544 34467889999999999999987
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=115.92 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCC----cee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPV----TKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~----~~~ 91 (306)
..++.+|||+|||+|..+..+++. + ..+|+++|++ ++++.|+++++.+++.++++++.+|+.+.. ++. ++|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 346789999999999999999984 3 5699999999 899999999999999888999999986642 111 689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+++. .......++..+.++|+|||+++
T Consensus 142 D~v~~~~------~~~~~~~~l~~~~~~L~pgG~lv 171 (225)
T 3tr6_A 142 DLIYIDA------DKANTDLYYEESLKLLREGGLIA 171 (225)
T ss_dssp EEEEECS------CGGGHHHHHHHHHHHEEEEEEEE
T ss_pred cEEEECC------CHHHHHHHHHHHHHhcCCCcEEE
Confidence 9999764 23456778888999999999998
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=114.59 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CC---Cceee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LP---VTKVD 92 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~---~~~~D 92 (306)
..++.+|||+|||+|..+..+++. + ..+|+++|.+ ++++.|+++++..++.++++++.+|+.+.. ++ .++||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 356789999999999999999985 2 4599999999 899999999999999888999999997642 11 15799
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++.. ......++..+.++|+|||+++
T Consensus 136 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv 164 (223)
T 3duw_A 136 FIFIDAD------KQNNPAYFEWALKLSRPGTVII 164 (223)
T ss_dssp EEEECSC------GGGHHHHHHHHHHTCCTTCEEE
T ss_pred EEEEcCC------cHHHHHHHHHHHHhcCCCcEEE
Confidence 9998642 2456778889999999999887
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-14 Score=121.53 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||+|||+|.++..+++.| .+|+|+|+| .+++.|+++++.+++.++++++++|+.++. +.++||+|+++++.
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 478999999999999999999987 699999999 899999999999998768999999998876 45799999998754
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. ......+..+.++|+|||.++
T Consensus 155 ~~~---~~~~~~~~~~~~~L~pgG~~i 178 (241)
T 3gdh_A 155 GGP---DYATAETFDIRTMMSPDGFEI 178 (241)
T ss_dssp SSG---GGGGSSSBCTTTSCSSCHHHH
T ss_pred CCc---chhhhHHHHHHhhcCCcceeH
Confidence 433 233334556778999999876
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=114.50 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=81.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee---cCCCceee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~D 92 (306)
..+.++.+|||+|||+|.++..+++. +..+|+|+|.+ .+++.+.++++.+ .+++++.+|+.+. +...++||
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEE
Confidence 45678899999999999999999985 34699999999 8888888887776 4699999999873 33457899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++.. .......++..+.++|+|||.++
T Consensus 150 ~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~ 179 (233)
T 2ipx_A 150 VIFADVA-----QPDQTRIVALNAHTFLRNGGHFV 179 (233)
T ss_dssp EEEECCC-----CTTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcCC-----CccHHHHHHHHHHHHcCCCeEEE
Confidence 9999753 22344556777889999999987
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=117.30 Aligned_cols=116 Identities=18% Similarity=0.299 Sum_probs=85.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEec-h-HHHHHHHHHH-----HHcCCC----CeEEEE
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-S-QMANMAKQIV-----EANGFS----NVITVL 77 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~-s-~~~~~a~~~~-----~~~~~~----~~v~~~ 77 (306)
+...+++.......++.+|||+|||+|.+++.+++.|+++|+++|+ + .+++.|++++ +.+++. ++++++
T Consensus 65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~ 144 (281)
T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV 144 (281)
T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence 3445556655555788999999999999999999988779999999 8 8999999999 555553 367887
Q ss_pred Eceeeeec--C----CCceeeEEEEcccccccCCcchHHHHHHHHhhccc---C--CeEEE
Q 021852 78 KGKIEEIE--L----PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV---D--DGIVL 127 (306)
Q Consensus 78 ~~d~~~~~--~----~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~---p--~G~~i 127 (306)
..++.+.. + +.++||+|++.-+ +.+......++..+.++|+ | ||+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dv---l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~ 202 (281)
T 3bzb_A 145 PYRWGDSPDSLQRCTGLQRFQVVLLADL---LSFHQAHDALLRSVKMLLALPANDPTAVAL 202 (281)
T ss_dssp ECCTTSCTHHHHHHHSCSSBSEEEEESC---CSCGGGHHHHHHHHHHHBCCTTTCTTCEEE
T ss_pred EecCCCccHHHHhhccCCCCCEEEEeCc---ccChHHHHHHHHHHHHHhcccCCCCCCEEE
Confidence 66544321 1 3478999998433 3345678889999999999 9 99865
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-14 Score=120.71 Aligned_cols=106 Identities=31% Similarity=0.331 Sum_probs=86.6
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
.+.+.+.......++.+|||+|||+|.++..+++.+ .+|+|+|+| .|++.|+++. +++++.+|+++++++.
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCC
Confidence 355555555556788999999999999999999865 499999999 7888775542 6999999999988877
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++||+|++..+.+++ .+...++.++.++|| ||.++
T Consensus 93 ~~fD~v~~~~~l~~~---~~~~~~l~~~~~~Lk-gG~~~ 127 (261)
T 3ege_A 93 KSVDGVISILAIHHF---SHLEKSFQEMQRIIR-DGTIV 127 (261)
T ss_dssp TCBSEEEEESCGGGC---SSHHHHHHHHHHHBC-SSCEE
T ss_pred CCEeEEEEcchHhhc---cCHHHHHHHHHHHhC-CcEEE
Confidence 899999997654433 677889999999999 99665
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-14 Score=119.90 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=85.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC------Ccee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP------VTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~ 91 (306)
..++.+|||+|||+|..++.+|+. + ..+|+++|++ ++++.|+++++.+++.++++++.+|+.+.... .++|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 346789999999999999999984 2 4699999999 89999999999999988899999999765311 3789
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
|+|+++.. ......++..+.++|+|||+++.
T Consensus 138 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~ 168 (242)
T 3r3h_A 138 DFIFIDAD------KTNYLNYYELALKLVTPKGLIAI 168 (242)
T ss_dssp EEEEEESC------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEcCC------hHHhHHHHHHHHHhcCCCeEEEE
Confidence 99998642 34566788889999999999983
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=113.33 Aligned_cols=94 Identities=21% Similarity=0.198 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||+|||+|.++..+ +..+|+++|.| .+++.++++. .+++++.+|+.+++++.++||+|++....
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 105 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTTL 105 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESCT
T ss_pred CCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcChh
Confidence 37899999999999998877 55599999999 8999998765 35789999999888777899999997543
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++ ..+...++.++.++|+|||.++
T Consensus 106 ~~---~~~~~~~l~~~~~~L~pgG~l~ 129 (211)
T 2gs9_A 106 EF---VEDVERVLLEARRVLRPGGALV 129 (211)
T ss_dssp TT---CSCHHHHHHHHHHHEEEEEEEE
T ss_pred hh---cCCHHHHHHHHHHHcCCCCEEE
Confidence 33 3467889999999999999987
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=113.95 Aligned_cols=98 Identities=21% Similarity=0.248 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc-c
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW-M 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~-~ 99 (306)
.++.+|||+|||+|.++..+++.+. +|+++|.| .|++.|+++. .+++++.+|+.++++ .++||+|+|.. .
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~~D~v~~~~~~ 110 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-GRKFSAVVSMFSS 110 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-SSCEEEEEECTTG
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-CCCCcEEEEcCch
Confidence 6788999999999999999999765 99999999 8999998763 258899999988766 47999999632 3
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++........++..+.++|+|||.++
T Consensus 111 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 138 (239)
T 3bxo_A 111 VGYLKTTEELGAAVASFAEHLEPGGVVV 138 (239)
T ss_dssp GGGCCSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 2334344677889999999999999998
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=116.06 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=84.5
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
+.......++.+|||+|||+|.++..+++. +..+|+++|+| .|++.++++ . .+++++.+|+.+++ +.++||
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~-~~~~fD 97 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----L-PNTNFGKADLATWK-PAQKAD 97 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----S-TTSEEEECCTTTCC-CSSCEE
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----C-CCcEEEECChhhcC-ccCCcC
Confidence 333345667889999999999999999885 34599999999 899999876 1 36899999998887 668999
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|++..+.+++ .+...++..+.++|+|||.++
T Consensus 98 ~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 129 (259)
T 2p35_A 98 LLYANAVFQWV---PDHLAVLSQLMDQLESGGVLA 129 (259)
T ss_dssp EEEEESCGGGS---TTHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEeCchhhC---CCHHHHHHHHHHhcCCCeEEE
Confidence 99997654433 567889999999999999987
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-13 Score=112.46 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=85.5
Q ss_pred HHHHHHh---cccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 11 YQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 11 ~~~ai~~---~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
...+|.+ ...+.+|.+|||+|||+|.++..+|+. | ..+|+|+|.+ +|++.+++++++. .++..+.++..+.
T Consensus 62 laa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p 138 (233)
T 4df3_A 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFP 138 (233)
T ss_dssp HHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCG
T ss_pred HHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCc
Confidence 4556653 356889999999999999999999983 4 5699999999 8999998876554 3588888887654
Q ss_pred c---CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 E---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~---~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ...+++|+|+++.. .......++.++.+.|||||.++
T Consensus 139 ~~~~~~~~~vDvVf~d~~-----~~~~~~~~l~~~~r~LKpGG~lv 179 (233)
T 4df3_A 139 EKYRHLVEGVDGLYADVA-----QPEQAAIVVRNARFFLRDGGYML 179 (233)
T ss_dssp GGGTTTCCCEEEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccceEEEEEEecc-----CChhHHHHHHHHHHhccCCCEEE
Confidence 3 34578999998642 22456678888999999999987
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-13 Score=118.77 Aligned_cols=106 Identities=23% Similarity=0.162 Sum_probs=84.5
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
+.+.......++.+|||+|||+|.++..+++.+. .+|+++|.+ ++++.|+++++.+++.+ ++++.+|+.+...+.+
T Consensus 65 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGC
T ss_pred HHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccCC
Confidence 3344445677899999999999999999998543 479999999 89999999999999865 9999999987543447
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+||+|++..+.+.+. +.+.+.|+|||+++.
T Consensus 144 ~fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi 173 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIV 173 (317)
T ss_dssp CEEEEEECSBBSCCC---------HHHHHHEEEEEEEEE
T ss_pred CeEEEEEcCCHHHHH---------HHHHHhcCCCcEEEE
Confidence 899999976543321 356689999999873
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=120.57 Aligned_cols=117 Identities=21% Similarity=0.148 Sum_probs=93.8
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
....++.......++.+|||+|||+|.+++.++..+ ..+|+|+|++ .+++.|+++++.+++. +++++++|+.+++.
T Consensus 190 ~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 190 VLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR 268 (354)
T ss_dssp HHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc
Confidence 345555555667788999999999999999999853 4699999999 8999999999999997 79999999999876
Q ss_pred CCceeeEEEEcccccccCC-----cchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLF-----ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~-----~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...||+|++++....... ......++..+.++|+|||.++
T Consensus 269 ~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~ 314 (354)
T 3tma_A 269 FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVA 314 (354)
T ss_dssp TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEE
T ss_pred ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEE
Confidence 6677999999975221111 1123678888899999999987
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=118.47 Aligned_cols=116 Identities=25% Similarity=0.297 Sum_probs=88.1
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
+.+.+.+.......++.+|||+|||+|.+++.+++.+..+|+|+|+| .+++.|+++++.+++.++++++++|+.+. ++
T Consensus 109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~ 187 (284)
T 1nv8_A 109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK 187 (284)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG
T ss_pred HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc
Confidence 33444444322223678999999999999999988755599999999 89999999999999987899999999874 33
Q ss_pred Ccee---eEEEEcccccccC---------CcchH--------HHHHHHHh-hcccCCeEEE
Q 021852 88 VTKV---DIIISEWMGYFLL---------FENML--------NTVLYARD-KWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~---D~iv~~~~~~~~~---------~~~~~--------~~~l~~~~-~~L~p~G~~i 127 (306)
++| |+|++++. |... ++... ..++..+. +.|+|||.++
T Consensus 188 -~~f~~~D~IvsnPP-yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~ 246 (284)
T 1nv8_A 188 -EKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVL 246 (284)
T ss_dssp -GGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEE
T ss_pred -cccCCCCEEEEcCC-CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEE
Confidence 578 99999864 2211 12111 15788888 9999999987
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=115.31 Aligned_cols=104 Identities=28% Similarity=0.250 Sum_probs=86.4
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHc-CCCCeEEEEEceeeeecCCCce
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEAN-GFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
+.......++.+|||+|||+|.++..+++. + ..+|+++|.+ .+++.|+++++.+ + .++++++.+|+.+.+++.++
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~~~ 166 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEEAA 166 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCTTC
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCCCC
Confidence 333455778999999999999999999986 4 5699999998 8999999999887 7 35799999999887666678
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|++++. ....++..+.++|+|||.++
T Consensus 167 ~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~ 195 (258)
T 2pwy_A 167 YDGVALDLM--------EPWKVLEKAALALKPDRFLV 195 (258)
T ss_dssp EEEEEEESS--------CGGGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECCc--------CHHHHHHHHHHhCCCCCEEE
Confidence 999998642 23357778889999999987
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-13 Score=121.87 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=84.0
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHH-------HHHHHHcCCC-CeEEEEEceee-e-e
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMA-------KQIVEANGFS-NVITVLKGKIE-E-I 84 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a-------~~~~~~~~~~-~~v~~~~~d~~-~-~ 84 (306)
....+.++.+|||||||+|.+++.+|+ .|+.+|+|+|++ .+++.| +++++..|+. ++++++.++.. . .
T Consensus 236 ~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~ 315 (433)
T 1u2z_A 236 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN 315 (433)
T ss_dssp HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccc
Confidence 334567889999999999999999998 577799999998 888888 8888888853 57999987543 2 1
Q ss_pred cC--CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 EL--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~--~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+ ..++||+|+++.. + ....++..+.++.+.|+|||+++
T Consensus 316 ~~~~~~~~FDvIvvn~~---l-~~~d~~~~L~el~r~LKpGG~lV 356 (433)
T 1u2z_A 316 RVAELIPQCDVILVNNF---L-FDEDLNKKVEKILQTAKVGCKII 356 (433)
T ss_dssp HHHHHGGGCSEEEECCT---T-CCHHHHHHHHHHHTTCCTTCEEE
T ss_pred ccccccCCCCEEEEeCc---c-ccccHHHHHHHHHHhCCCCeEEE
Confidence 11 1368999998632 2 22567778889999999999987
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=110.94 Aligned_cols=95 Identities=23% Similarity=0.339 Sum_probs=79.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
...++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.++++ . ++++++.+| .+++.++||+|++..
T Consensus 14 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~-~~v~~~~~d---~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 14 FEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----F-DSVITLSDP---KEIPDNSVDFILFAN 83 (170)
T ss_dssp HSSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----C-TTSEEESSG---GGSCTTCEEEEEEES
T ss_pred CcCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----C-CCcEEEeCC---CCCCCCceEEEEEcc
Confidence 356788999999999999999999765 99999999 899999877 2 468999988 556678999999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+++ .....+++++.+.|+|||.++
T Consensus 84 ~l~~~---~~~~~~l~~~~~~L~pgG~l~ 109 (170)
T 3i9f_A 84 SFHDM---DDKQHVISEVKRILKDDGRVI 109 (170)
T ss_dssp CSTTC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred chhcc---cCHHHHHHHHHHhcCCCCEEE
Confidence 54433 467889999999999999987
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=118.33 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=81.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++.+|||+|||+|.++..+++.+ .+|+|+|+| .|++.++++. .+++++.+|+.+++++ ++||+|++.
T Consensus 53 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~~ 124 (279)
T 3ccf_A 53 LNPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVD-KPLDAVFSN 124 (279)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCS-SCEEEEEEE
T ss_pred hCCCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcC-CCcCEEEEc
Confidence 345678899999999999999999954 599999999 8999998764 3578999999988764 799999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+++ .+...++.++.++|+|||.++
T Consensus 125 ~~l~~~---~d~~~~l~~~~~~LkpgG~l~ 151 (279)
T 3ccf_A 125 AMLHWV---KEPEAAIASIHQALKSGGRFV 151 (279)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred chhhhC---cCHHHHHHHHHHhcCCCcEEE
Confidence 654433 467789999999999999987
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-13 Score=112.85 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCceeeEEEEc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISE 97 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~iv~~ 97 (306)
.++.+|||+|||+|..+..+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. +...+ ||+|+++
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 46789999999999999999885 3 4699999999 89999999999988877899999999764 32235 9999986
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
. .......++..+.++|+|||+++.+
T Consensus 134 ~------~~~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 134 C------DVFNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp T------TTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred C------ChhhhHHHHHHHHHhcCCCeEEEEE
Confidence 3 1245677889999999999999843
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=117.14 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=86.3
Q ss_pred HhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 16 ~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
.......++.+|||+|||+|.++..+++. + ..+|+++|.+ .+++.|+++++.+++.++++++.+|+.+. ++.++||
T Consensus 105 ~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D 183 (277)
T 1o54_A 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVD 183 (277)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEE
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccC
Confidence 33356678899999999999999999986 5 5699999998 89999999999998867899999999876 5557899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|++++. ....++..+.++|+|||.++
T Consensus 184 ~V~~~~~--------~~~~~l~~~~~~L~pgG~l~ 210 (277)
T 1o54_A 184 ALFLDVP--------DPWNYIDKCWEALKGGGRFA 210 (277)
T ss_dssp EEEECCS--------CGGGTHHHHHHHEEEEEEEE
T ss_pred EEEECCc--------CHHHHHHHHHHHcCCCCEEE
Confidence 9998642 22356777889999999987
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=131.77 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeee-cCCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEI-ELPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~~D~iv~~~ 98 (306)
.+|++|||+|||+|.+++.+++.|+++|+++|+| .+++.|+++++.|++. ++++++++|+.++ ....++||+|++++
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 4789999999999999999999889899999999 8999999999999997 5899999999874 33347899999997
Q ss_pred cccc--------cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYF--------LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~--------~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+. .........++..+.++|+|||.++
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~ 654 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIM 654 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 5322 1122456678888899999999997
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-13 Score=113.53 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=85.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCC--CceeeEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELP--VTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~--~~~~D~iv 95 (306)
..++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.|+++++.+++.++++++.+|+.+. +.. .++||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 457889999999999999999985 35699999999 89999999999999877899999998774 211 37899999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
++.. ......++..+.++|+|||+++.
T Consensus 132 ~~~~------~~~~~~~l~~~~~~L~pgG~lv~ 158 (233)
T 2gpy_A 132 IDAA------KGQYRRFFDMYSPMVRPGGLILS 158 (233)
T ss_dssp EEGG------GSCHHHHHHHHGGGEEEEEEEEE
T ss_pred ECCC------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 8643 13567788999999999999984
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-13 Score=116.31 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=83.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
.+.++.+|||+|||+|.+++.+|+. ++.+|+|+|.+ .+++.|+++++.|++. ++.++.+|+.+.+. .++||+|+++
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~-~~~~D~Vi~d 193 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVEL-KDVADRVIMG 193 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCC-TTCEEEEEEC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCc-cCCceEEEEC
Confidence 3678899999999999999999986 46699999999 8999999999999995 58899999988732 4789999998
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. ....++..+.+.|+|||+++
T Consensus 194 ~p~-------~~~~~l~~~~~~LkpgG~l~ 216 (272)
T 3a27_A 194 YVH-------KTHKFLDKTFEFLKDRGVIH 216 (272)
T ss_dssp CCS-------SGGGGHHHHHHHEEEEEEEE
T ss_pred Ccc-------cHHHHHHHHHHHcCCCCEEE
Confidence 642 33446667778999999986
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=115.46 Aligned_cols=91 Identities=19% Similarity=0.142 Sum_probs=76.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eeecCC-CceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEIELP-VTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~-~~~~D~iv~~ 97 (306)
..++.+|||+|||+|.++..+++.++ +|+++|+| .+++.|+++ . .+++++.+|+ ..++++ .++||+|++.
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~~~~~~fD~v~~~ 118 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----A-PHADVYEWNGKGELPAGLGAPFGLIVSR 118 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----C-TTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----C-CCceEEEcchhhccCCcCCCCEEEEEeC
Confidence 46789999999999999999999865 99999999 899999877 2 3689999999 456665 6899999986
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ....++.++.++|+|||.++
T Consensus 119 ~---------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 R---------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp S---------CCSGGGGGHHHHEEEEEEEE
T ss_pred C---------CHHHHHHHHHHHcCCCcEEE
Confidence 1 33456677789999999998
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=114.81 Aligned_cols=96 Identities=25% Similarity=0.335 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|+++.. .+ ++.+|+.+++++.++||+|++....
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~~~~~~fD~v~~~~~~ 124 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLPFPSGAFEAVLALGDV 124 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCCSCTTCEEEEEECSSH
T ss_pred CCCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCCCCCCCEEEEEEcchh
Confidence 3788999999999999999999865 89999999 89999987643 12 7888998887777899999985321
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.. .....++.++.++|+|||.++
T Consensus 125 ~~~~--~~~~~~l~~~~~~LkpgG~l~ 149 (260)
T 2avn_A 125 LSYV--ENKDKAFSEIRRVLVPDGLLI 149 (260)
T ss_dssp HHHC--SCHHHHHHHHHHHEEEEEEEE
T ss_pred hhcc--ccHHHHHHHHHHHcCCCeEEE
Confidence 2221 237889999999999999987
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.7e-14 Score=117.19 Aligned_cols=117 Identities=20% Similarity=0.045 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcccC-CCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 8 TKSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 8 ~~~~~~ai~~~~~~-~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
++.+.+.+...... .++.+|||+|||+|.++..+++.+ ..+|+|+|++ .+++.|++++..++. +++++++|+.+
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~- 90 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE- 90 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-
Confidence 34455555443333 678999999999999999999964 3499999999 899999999988877 68999999887
Q ss_pred cCCC-----ceeeEEEEcccccccCCc-----------------------chHHHHHHHHhhcccCCeE-EE
Q 021852 85 ELPV-----TKVDIIISEWMGYFLLFE-----------------------NMLNTVLYARDKWLVDDGI-VL 127 (306)
Q Consensus 85 ~~~~-----~~~D~iv~~~~~~~~~~~-----------------------~~~~~~l~~~~~~L~p~G~-~i 127 (306)
.++. ++||+|++++..+..... ..+..++..+.++|+|||. ++
T Consensus 91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 162 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF 162 (215)
T ss_dssp HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3343 799999998642211100 0126677788899999999 54
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-13 Score=123.47 Aligned_cols=105 Identities=26% Similarity=0.272 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----CCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~D~iv~ 96 (306)
.++.+|||+|||+|.+++.+++.|+++|+++|++ .+++.|+++++.|++.++++++.+|+.+... +..+||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 3789999999999999999999888899999999 8999999999999997689999999977531 2468999999
Q ss_pred cccccccCCc-------chHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFE-------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~-------~~~~~~l~~~~~~L~p~G~~i 127 (306)
++.-+. ... .....++..+.++|+|||.++
T Consensus 296 dpP~~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 332 (396)
T 2as0_A 296 DPPAFV-QHEKDLKAGLRAYFNVNFAGLNLVKDGGILV 332 (396)
T ss_dssp CCCCSC-SSGGGHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 875322 121 345567788889999999887
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-13 Score=122.59 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC-CCeEEEEEceeeeecC----CCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF-SNVITVLKGKIEEIEL----PVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~----~~~~~D~iv 95 (306)
.++.+|||+|||+|.+++.+++.|+++|+++|++ .+++.|+++++.|++ .++++++.+|+.++.. ...+||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 5788999999999999999999888899999999 899999999999998 6679999999987631 136899999
Q ss_pred Eccccccc------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFL------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.-+.. ........++..+.++|+|||+++
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 336 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILL 336 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 98753211 111456678888889999999987
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-13 Score=114.72 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-c-C-----CCce
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-E-L-----PVTK 90 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~ 90 (306)
..++.+|||||||+|..++.+++. + ..+|+++|.+ ++++.|+++++..++.++++++.+|+.+. + + +.++
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 356789999999999999999984 3 4599999999 99999999999999977899999998764 2 2 1478
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
||+|+++.. ......++..+.++|+|||+++.
T Consensus 157 fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~ 188 (247)
T 1sui_A 157 YDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGY 188 (247)
T ss_dssp BSEEEECSC------STTHHHHHHHHHHHBCTTCCEEE
T ss_pred EEEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEE
Confidence 999998632 24567788889999999999973
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=118.98 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=84.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC----------------------------
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF---------------------------- 70 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~---------------------------- 70 (306)
...++.+|||+|||+|.++..+++.+..+|+|+|+| .|++.|++++..++.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 346778999999999999999988776799999999 899999888765431
Q ss_pred CCeE-EEEEceeeeecC-CC---ceeeEEEEcccccccC-CcchHHHHHHHHhhcccCCeEEE
Q 021852 71 SNVI-TVLKGKIEEIEL-PV---TKVDIIISEWMGYFLL-FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 71 ~~~v-~~~~~d~~~~~~-~~---~~~D~iv~~~~~~~~~-~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..++ +++.+|+.+... +. ++||+|++..+.+++. +......++..+.++|+|||.++
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li 195 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLV 195 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEE
Confidence 0127 899999987642 44 7899999965433221 33577889999999999999987
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-13 Score=112.91 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=84.3
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++.+|||+|||+|.++..+++. ..+|+++|.+ ++++.|+++.+.+++.++++++.+|+.+...+.++||+|+++
T Consensus 87 ~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 165 (248)
T 2yvl_A 87 LNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD 165 (248)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC
T ss_pred cCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC
Confidence 45678899999999999999999998 5699999999 899999999999888778999999998754355789999986
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+. ....++..+.++|+|||.++
T Consensus 166 ~~--------~~~~~l~~~~~~L~~gG~l~ 187 (248)
T 2yvl_A 166 VR--------EPWHYLEKVHKSLMEGAPVG 187 (248)
T ss_dssp SS--------CGGGGHHHHHHHBCTTCEEE
T ss_pred Cc--------CHHHHHHHHHHHcCCCCEEE
Confidence 42 23356777789999999987
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-13 Score=112.56 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=79.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH------cCCCCeEEEEEceeee-ec--CCCc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEA------NGFSNVITVLKGKIEE-IE--LPVT 89 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~------~~~~~~v~~~~~d~~~-~~--~~~~ 89 (306)
..++.+|||||||+|.++..+|+. +...|+|+|+| .|++.|+++++. .++ .+++++.+|+.+ ++ ++.+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCc
Confidence 345679999999999999999885 45699999999 899999888764 455 469999999986 55 6678
Q ss_pred eeeEEEEcccccccCCcc-----hHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFEN-----MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~-----~~~~~l~~~~~~L~p~G~~i 127 (306)
++|.|++..........+ ..+.++..+.++|+|||.++
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~ 165 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVY 165 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEE
Confidence 999998743211110000 11468899999999999987
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-13 Score=108.17 Aligned_cols=99 Identities=23% Similarity=0.277 Sum_probs=81.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc-c
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-W 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~-~ 98 (306)
+.++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.++++. .+++++.+|+.+++++.++||+|++. .
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGN 116 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCc
Confidence 56789999999999999999999865 99999999 8999998764 24789999998877666899999997 3
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+++ .......++..+.++|+|||.++
T Consensus 117 ~~~~~-~~~~~~~~l~~~~~~l~~~G~l~ 144 (195)
T 3cgg_A 117 VMGFL-AEDGREPALANIHRALGADGRAV 144 (195)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHhhc-ChHHHHHHHHHHHHHhCCCCEEE
Confidence 33322 34566788999999999999987
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=115.38 Aligned_cols=103 Identities=21% Similarity=0.219 Sum_probs=75.3
Q ss_pred CCCCEEEEEcCCCcHHHHHH-----HHcCCCEE--EEEech-HHHHHHHHHHHHc-CCCC-eEEEEEceeeeec------
Q 021852 22 FKDKVVLDVGAGTGILSLFC-----AKAGAAHV--YAVECS-QMANMAKQIVEAN-GFSN-VITVLKGKIEEIE------ 85 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~-----a~~g~~~v--~~iD~s-~~~~~a~~~~~~~-~~~~-~v~~~~~d~~~~~------ 85 (306)
.++.+|||||||+|.++..+ ++.+..+| +++|.| +|++.|++++... ++.+ ++.+..++++++.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 45779999999999766432 22233344 999999 9999999988654 4432 2344566665543
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++++||+|++..+.+++ .++..++.++.++|||||.++
T Consensus 131 ~~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~ 169 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKML 169 (292)
T ss_dssp TCCCCEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEE
T ss_pred cCCCceeEEEEeeeeeec---CCHHHHHHHHHHHcCCCcEEE
Confidence 346899999997654443 678889999999999999987
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.9e-13 Score=116.06 Aligned_cols=107 Identities=16% Similarity=0.098 Sum_probs=86.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----CCceee
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVD 92 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~D 92 (306)
...++.+|||+|||+|..+..+++ .+..+|+|+|.+ .+++.++++++++++. +++++++|+.++.. +.++||
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFD 158 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCC
Confidence 456889999999999999999988 344799999999 8999999999999985 69999999987753 247899
Q ss_pred EEEEcccccccCC---------------cchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLF---------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~---------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|++++..+.... ......++..+.++|||||.++
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 208 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELV 208 (274)
T ss_dssp EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 9999864332110 0234678888899999999998
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=110.96 Aligned_cols=102 Identities=22% Similarity=0.213 Sum_probs=80.5
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.+.......++.+|||+|||+|.++..+++.+ .+|+++|.+ .+++.|++++..++ +++++.+|+.+...+.++|
T Consensus 60 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCCCc
Confidence 344444556788999999999999999999986 699999999 89999999887665 6999999998732234789
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++....+.+. ..+.++|+|||+++
T Consensus 136 D~v~~~~~~~~~~---------~~~~~~L~pgG~l~ 162 (231)
T 1vbf_A 136 DRVVVWATAPTLL---------CKPYEQLKEGGIMI 162 (231)
T ss_dssp EEEEESSBBSSCC---------HHHHHTEEEEEEEE
T ss_pred cEEEECCcHHHHH---------HHHHHHcCCCcEEE
Confidence 9999975433221 34678999999987
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.4e-13 Score=117.38 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=86.0
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++++++. +++++++|+.++....++||+|+
T Consensus 114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il 192 (315)
T 1ixk_A 114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKIL 192 (315)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEE
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEE
Confidence 34678899999999999999999884 34699999999 8999999999999985 59999999988754346899999
Q ss_pred EcccccccC--C-cc----------------hHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLL--F-EN----------------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~--~-~~----------------~~~~~l~~~~~~L~p~G~~i 127 (306)
+++..+... . .. ....++..+.++|||||+++
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv 243 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILV 243 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 975432211 0 00 11478888899999999998
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=116.88 Aligned_cols=106 Identities=10% Similarity=0.070 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHc---CCCCe---------------------
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECS-QMANMAKQIVEAN---GFSNV--------------------- 73 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~---g~~~v~~iD~s-~~~~~a~~~~~~~---~~~~~--------------------- 73 (306)
.++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++++..+ ++.++
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 36789999999999999999875 34589999999 8999999888766 44322
Q ss_pred ----EE-------------EEEceeeeecC-----CCceeeEEEEcccccccCC------cchHHHHHHHHhhcccCCeE
Q 021852 74 ----IT-------------VLKGKIEEIEL-----PVTKVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGI 125 (306)
Q Consensus 74 ----v~-------------~~~~d~~~~~~-----~~~~~D~iv~~~~~~~~~~------~~~~~~~l~~~~~~L~p~G~ 125 (306)
++ ++++|+.+... +..+||+|++++....... ......++..+.++|+|||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 66 99999877431 3358999999864222211 24566888899999999999
Q ss_pred EE
Q 021852 126 VL 127 (306)
Q Consensus 126 ~i 127 (306)
++
T Consensus 210 l~ 211 (250)
T 1o9g_A 210 IA 211 (250)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=108.83 Aligned_cols=104 Identities=21% Similarity=0.209 Sum_probs=81.2
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
.+.......++.+|||+|||+|.++..+++.+. .+|+++|.+ ++++.|++++..+++. +++++.+|+.......++
T Consensus 68 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGGGCC
T ss_pred HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCCCCC
Confidence 344445567889999999999999999998542 699999999 8999999999888885 499999998543222468
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|++....+.+. +.+.++|+|||.++
T Consensus 147 fD~v~~~~~~~~~~---------~~~~~~L~pgG~lv 174 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP---------EPLIRQLKDGGKLL 174 (215)
T ss_dssp EEEEEESSBBSSCC---------HHHHHTEEEEEEEE
T ss_pred eeEEEECCchHHHH---------HHHHHHcCCCcEEE
Confidence 99999975433221 35678999999987
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=111.64 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C-----CCce
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L-----PVTK 90 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~~ 90 (306)
..++.+|||+|||+|..++.+++. + ..+|+++|.+ ++++.|++++++.++.++++++.+|+.+.. + +.++
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 356789999999999999999984 3 4699999999 899999999999999778999999987642 2 1478
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
||+|+++. .......+++.+.++|+|||+++.
T Consensus 148 fD~I~~d~------~~~~~~~~l~~~~~~L~pGG~lv~ 179 (237)
T 3c3y_A 148 YDFGFVDA------DKPNYIKYHERLMKLVKVGGIVAY 179 (237)
T ss_dssp EEEEEECS------CGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred cCEEEECC------chHHHHHHHHHHHHhcCCCeEEEE
Confidence 99999863 234567788889999999999983
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=115.56 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||+|||+|.++..+++. +..+++++|.+.+++.|++++...++.++++++.+|+.+.+++ +.||+|++..+.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~v~~~~~l 242 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG-NDYDLVLLPNFL 242 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC-SCEEEEEEESCG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCcEEEEcchh
Confidence 67789999999999999999885 4459999999999999999999988877899999999876655 459999996543
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. .......++..+.+.|+|||.++
T Consensus 243 ~~~-~~~~~~~~l~~~~~~L~pgG~l~ 268 (335)
T 2r3s_A 243 HHF-DVATCEQLLRKIKTALAVEGKVI 268 (335)
T ss_dssp GGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccC-CHHHHHHHHHHHHHhCCCCcEEE
Confidence 433 23455788999999999999876
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.5e-13 Score=115.81 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=83.2
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHc-CCCCeEEEEEceeeeecCCCce
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEAN-GFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
+.......++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.|+++++.+ +. ++++++.+|+.+ .++.++
T Consensus 102 ~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~~~~ 179 (275)
T 1yb2_A 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FISDQM 179 (275)
T ss_dssp ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CCCSCC
T ss_pred HHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cCcCCC
Confidence 334456778899999999999999999885 35699999998 8999999999888 75 469999999987 345578
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|++++. ....++..+.++|+|||.++
T Consensus 180 fD~Vi~~~~--------~~~~~l~~~~~~LkpgG~l~ 208 (275)
T 1yb2_A 180 YDAVIADIP--------DPWNHVQKIASMMKPGSVAT 208 (275)
T ss_dssp EEEEEECCS--------CGGGSHHHHHHTEEEEEEEE
T ss_pred ccEEEEcCc--------CHHHHHHHHHHHcCCCCEEE
Confidence 999998532 23467788889999999987
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=111.72 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=84.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-c-C---------
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-E-L--------- 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~--------- 86 (306)
..++.+|||+|||+|..+..+++. + ..+|+++|.+ .+++.|+++++.+++.++++++.+|+.+. + +
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 457889999999999999999985 3 5699999999 89999999999999877799999998653 1 1
Q ss_pred ----C-C-ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 ----P-V-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ----~-~-~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ . ++||+|++.. .......++..+.++|+|||+++
T Consensus 138 ~~~f~~~~~~fD~I~~~~------~~~~~~~~l~~~~~~L~pgG~lv 178 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDA------DKENYPNYYPLILKLLKPGGLLI 178 (239)
T ss_dssp GTTTCCSTTCEEEEEECS------CGGGHHHHHHHHHHHEEEEEEEE
T ss_pred cccccCCCCCcCEEEEeC------CHHHHHHHHHHHHHHcCCCeEEE
Confidence 1 2 6899999863 23456678899999999999997
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.5e-13 Score=114.78 Aligned_cols=106 Identities=28% Similarity=0.381 Sum_probs=86.7
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHc-C-CCCeEEEEEceeeeecCCC
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEAN-G-FSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~-~-~~~~v~~~~~d~~~~~~~~ 88 (306)
.+.......++.+|||+|||+|.++..+++. + ..+|+++|.+ ++++.|+++++.+ + +.++++++.+|+.+..++.
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~ 169 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD 169 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCC
Confidence 3334456788999999999999999999984 3 5699999998 8999999999887 5 4467999999998877666
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++||+|+++.. ....++..+.++|+|||.++
T Consensus 170 ~~~D~v~~~~~--------~~~~~l~~~~~~L~pgG~l~ 200 (280)
T 1i9g_A 170 GSVDRAVLDML--------APWEVLDAVSRLLVAGGVLM 200 (280)
T ss_dssp TCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEE
T ss_pred CceeEEEECCc--------CHHHHHHHHHHhCCCCCEEE
Confidence 88999998542 22357778889999999987
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=109.77 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=79.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 93 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~ 93 (306)
.+.++.+|||+|||+|.++..+++. | ..+|+++|.+ .+++.++++++.+ .+++++.+|+.+.. ...++||+
T Consensus 70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~ 146 (227)
T 1g8a_A 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceE
Confidence 4668899999999999999999974 4 3699999999 8999998887655 46999999998732 11368999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++.. .......++..+.++|+|||.++
T Consensus 147 v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~ 175 (227)
T 1g8a_A 147 IFEDVA-----QPTQAKILIDNAEVYLKRGGYGM 175 (227)
T ss_dssp EEECCC-----STTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEECCC-----CHhHHHHHHHHHHHhcCCCCEEE
Confidence 998753 22333455888999999999987
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.1e-13 Score=111.74 Aligned_cols=101 Identities=20% Similarity=0.154 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCC----cee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPV----TKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~----~~~ 91 (306)
..++.+|||+|||+|..++.+++. + ..+|+++|.+ .+++.|+++++.+++.++++++.+|+.+.. ++. ++|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 457889999999999999999984 3 5699999999 999999999999998778999999986542 211 689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+++.. ......++..+.++|+|||+++
T Consensus 147 D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv 176 (229)
T 2avd_A 147 DVAVVDAD------KENCSAYYERCLQLLRPGGILA 176 (229)
T ss_dssp EEEEECSC------STTHHHHHHHHHHHEEEEEEEE
T ss_pred cEEEECCC------HHHHHHHHHHHHHHcCCCeEEE
Confidence 99999742 2455678888899999999997
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-13 Score=112.10 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=78.3
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee---cC-CCceeeE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI---EL-PVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~-~~~~~D~ 93 (306)
....++.+|||+|||+|.++..+++.|. +|+|+|++ .+++.|+++ .++.++..++.++ +. +..+||+
T Consensus 48 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 48 ILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred hhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccE
Confidence 3345679999999999999999999866 89999999 899998876 2467888888776 32 3356999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..+.+ ..+...++..+.++|+|||.++
T Consensus 120 v~~~~~l~----~~~~~~~l~~~~~~L~pgG~l~ 149 (227)
T 3e8s_A 120 ICANFALL----HQDIIELLSAMRTLLVPGGALV 149 (227)
T ss_dssp EEEESCCC----SSCCHHHHHHHHHTEEEEEEEE
T ss_pred EEECchhh----hhhHHHHHHHHHHHhCCCeEEE
Confidence 99975433 3566789999999999999997
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=125.65 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=84.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHc------CCCCeEEEEEceeeeecCCCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEAN------GFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
..++.+|||+|||+|.++..+++.+. .+|+|+|+| .|++.|+++++.. ++ .+++++++|+.+++++.++|
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sF 797 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDV 797 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCe
Confidence 45889999999999999999999763 699999999 8999998876532 44 47999999999988777899
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++..+.+++ .......++..+.++|+|| .++
T Consensus 798 DlVV~~eVLeHL-~dp~l~~~L~eI~RvLKPG-~LI 831 (950)
T 3htx_A 798 DIGTCLEVIEHM-EEDQACEFGEKVLSLFHPK-LLI 831 (950)
T ss_dssp CEEEEESCGGGS-CHHHHHHHHHHHHHTTCCS-EEE
T ss_pred eEEEEeCchhhC-ChHHHHHHHHHHHHHcCCC-EEE
Confidence 999997554444 2234556889999999999 444
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.6e-13 Score=113.08 Aligned_cols=102 Identities=12% Similarity=-0.033 Sum_probs=83.2
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC-----ceeeE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV-----TKVDI 93 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~D~ 93 (306)
...++.+|||+|||+|.++..+++.+. +|+|+|+| .|++.|+++.. . .+++++.+|+.++..+. .+||+
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~-~~~~~~~~d~~~~~~~~~~~~~~~~d~ 127 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---A-ANISYRLLDGLVPEQAAQIHSEIGDAN 127 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---C-TTEEEEECCTTCHHHHHHHHHHHCSCE
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---c-cCceEEECcccccccccccccccCccE
Confidence 356788999999999999999999877 99999999 89999988762 1 36999999998865321 24899
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..+.+++ .......++.++.++|+|||.++
T Consensus 128 v~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~ 160 (245)
T 3ggd_A 128 IYMRTGFHHI-PVEKRELLGQSLRILLGKQGAMY 160 (245)
T ss_dssp EEEESSSTTS-CGGGHHHHHHHHHHHHTTTCEEE
T ss_pred EEEcchhhcC-CHHHHHHHHHHHHHHcCCCCEEE
Confidence 9998765544 33467889999999999999876
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.40 E-value=6e-13 Score=114.51 Aligned_cols=105 Identities=18% Similarity=0.147 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee---cCCC---ceeeEE
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI---ELPV---TKVDII 94 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~---~~~D~i 94 (306)
++.+|||+|||+|.++..+++. +..+|+|+|++ .|++.|+++++.+++.++++++++|+.+. .++. ++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 5789999999999999888774 34699999999 89999999999999987899999997662 2332 589999
Q ss_pred EEcccccccCCc-c-----------hHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFE-N-----------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~-~-----------~~~~~l~~~~~~L~p~G~~i 127 (306)
++++..+....+ . ....++..+.++|+|||.+.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~ 189 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELE 189 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEE
Confidence 999753322100 0 11245566778999998764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=8.3e-13 Score=115.82 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc-----------------CCC------------
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN-----------------GFS------------ 71 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~-----------------~~~------------ 71 (306)
.++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++++.. +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4778999999999997766666445599999999 8999998865421 100
Q ss_pred CeEEEEEceeee-ecC-----CCceeeEEEEcccccccCC-cchHHHHHHHHhhcccCCeEEEe
Q 021852 72 NVITVLKGKIEE-IEL-----PVTKVDIIISEWMGYFLLF-ENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 72 ~~v~~~~~d~~~-~~~-----~~~~~D~iv~~~~~~~~~~-~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
..++++.+|+.+ +++ +.++||+|++..+.+++.. ...+..++.++.++|||||.++.
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~ 213 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 213 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 126678888877 432 3456999999765444322 34778899999999999999883
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=117.02 Aligned_cols=101 Identities=20% Similarity=0.295 Sum_probs=78.4
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CC-CEEEEEech-HHHHHHHHHHHHc-------C---CCCeEEEEEceeeee-
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECS-QMANMAKQIVEAN-------G---FSNVITVLKGKIEEI- 84 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~-~~v~~iD~s-~~~~~a~~~~~~~-------~---~~~~v~~~~~d~~~~- 84 (306)
..+.++.+|||+|||+|.++..+++. |. .+|+++|.+ .+++.|++++... + +.++++++.+|+.+.
T Consensus 101 l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 101 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 180 (336)
T ss_dssp HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence 45778999999999999999999985 54 699999999 8999999998753 2 235799999999876
Q ss_pred -cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 -ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 -~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++.++||+|++++... ..++..+.+.|+|||.++
T Consensus 181 ~~~~~~~fD~V~~~~~~~--------~~~l~~~~~~LkpgG~lv 216 (336)
T 2b25_A 181 EDIKSLTFDAVALDMLNP--------HVTLPVFYPHLKHGGVCA 216 (336)
T ss_dssp -------EEEEEECSSST--------TTTHHHHGGGEEEEEEEE
T ss_pred cccCCCCeeEEEECCCCH--------HHHHHHHHHhcCCCcEEE
Confidence 34556899999975311 226777889999999987
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=117.45 Aligned_cols=95 Identities=19% Similarity=0.331 Sum_probs=82.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.+++. ++ ++.+|+|+|.| .+++.|+++++.|++.++++++++|+.++. ++||+|++++.
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP 267 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred cCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence 35789999999999999999 88 68899999999 899999999999999778999999998764 78999999864
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+. ..++..+.++|+|||.++
T Consensus 268 ~~~-------~~~l~~~~~~L~~gG~l~ 288 (336)
T 2yx1_A 268 KFA-------HKFIDKALDIVEEGGVIH 288 (336)
T ss_dssp TTG-------GGGHHHHHHHEEEEEEEE
T ss_pred HhH-------HHHHHHHHHHcCCCCEEE
Confidence 321 256777788999999887
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-12 Score=108.03 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----cCCC--cee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----ELPV--TKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~--~~~ 91 (306)
..++.+|||+|||+|..+..+++. + ..+|+++|.+ ++++.|+++++.+++.++++++.+++.+. ..++ ++|
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 346789999999999999999984 3 4599999999 89999999999999877899999997653 1222 689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
|+|+++.. ......++..+.++|+|||+++.
T Consensus 150 D~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~ 180 (232)
T 3cbg_A 150 DLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVI 180 (232)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CEEEECCC------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 99998642 24567788899999999999983
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7e-13 Score=116.02 Aligned_cols=105 Identities=19% Similarity=0.125 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc--CC--------CCeEEEEEceeeeecCCCce
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN--GF--------SNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~--~~--------~~~v~~~~~d~~~~~~~~~~ 90 (306)
.++.+|||||||+|.++..+++.+..+|+++|++ .+++.|++++ .. ++ .++++++.+|+.+.....++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 4678999999999999999998877799999999 8999999987 33 32 35799999998664211478
Q ss_pred eeEEEEcccccccCCcch-HHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENM-LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~-~~~~l~~~~~~L~p~G~~i 127 (306)
||+|+++........... ...++..+.++|+|||+++
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv 190 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYV 190 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEE
Confidence 999999865332111111 2567888999999999997
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-12 Score=103.75 Aligned_cols=98 Identities=26% Similarity=0.219 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.|..+|+|+|++ .+++.|+++++.+++ +++++++|+.++ + .+||+|++++.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~--~-~~~D~v~~~~p 121 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF--N-SRVDIVIMNPP 121 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC--C-CCCSEEEECCC
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc--C-CCCCEEEEcCC
Confidence 45788999999999999999999887799999999 899999999988887 699999999886 3 58999999975
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
.+ ....+....+++.+.+++ |+.+
T Consensus 122 ~~-~~~~~~~~~~l~~~~~~l--~~~~ 145 (207)
T 1wy7_A 122 FG-SQRKHADRPFLLKAFEIS--DVVY 145 (207)
T ss_dssp CS-SSSTTTTHHHHHHHHHHC--SEEE
T ss_pred Cc-cccCCchHHHHHHHHHhc--CcEE
Confidence 33 223334456777777777 5543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=110.65 Aligned_cols=105 Identities=22% Similarity=0.262 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHc--------CCCCeEEEEEceeee-ec--CCC
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEAN--------GFSNVITVLKGKIEE-IE--LPV 88 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~-~~--~~~ 88 (306)
.++.+|||+|||+|.+++.+++.+. .+|+|+|+| .+++.|+++++.+ ++. +++++.+|+.+ ++ ++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhccc
Confidence 4678999999999999999999754 489999999 8999999998876 774 69999999987 44 556
Q ss_pred ceeeEEEEcccccccCC-----cchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLF-----ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~-----~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+|.|+.......... ......++..+.++|+|||.++
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~ 170 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVY 170 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEE
Confidence 78999986432111000 0011478888999999999987
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.4e-13 Score=117.27 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--cCC-CCeEEEEEceeeee-cCCCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~~D~iv 95 (306)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. +++ .++++++.+|+.+. ....++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45689999999999999999986 56799999999 899999998765 333 35799999998764 22347899999
Q ss_pred EcccccccCCcchH-HHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENML-NTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~l~~~~~~L~p~G~~i 127 (306)
++............ ..+++.+.+.|+|||+++
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv 227 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCV 227 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEE
Confidence 98643221111122 678889999999999997
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-12 Score=114.35 Aligned_cols=107 Identities=10% Similarity=0.128 Sum_probs=89.0
Q ss_pred ccCCC-CCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEE
Q 021852 19 KFLFK-DKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 94 (306)
Q Consensus 19 ~~~~~-~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~i 94 (306)
....+ +.+|||||||+|.++..+++. +..+++++|..++++.|++++...++.++++++.+|+.+.+ .+ +.||+|
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~D~v 252 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG-GAADVV 252 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT-CCEEEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC-CCccEE
Confidence 34455 889999999999999999884 45699999998899999999999998888999999998875 44 679999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++..+.+.. .......+++.+.+.|+|||+++
T Consensus 253 ~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~ 284 (352)
T 3mcz_A 253 MLNDCLHYF-DAREAREVIGHAAGLVKPGGALL 284 (352)
T ss_dssp EEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEE
T ss_pred EEecccccC-CHHHHHHHHHHHHHHcCCCCEEE
Confidence 997654433 33345789999999999999987
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-12 Score=116.03 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=81.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~ 97 (306)
..+|.+|||+|||+|.+++.+|+.|+. |+++|+| .+++.|+++++.|++.+ ++.++|+.++. ++ +.||+|+++
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~-~~fD~Ii~d 287 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLE-GPFHHVLLD 287 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCC-CCEEEEEEC
T ss_pred hcCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhc-CCCCEEEEC
Confidence 345899999999999999999998885 9999999 89999999999999964 45688887753 23 449999999
Q ss_pred ccccccCCc-------chHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFE-------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~-------~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. +.... .....++..+.++|+|||.++
T Consensus 288 pP~-f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv 323 (393)
T 4dmg_A 288 PPT-LVKRPEELPAMKRHLVDLVREALRLLAEEGFLW 323 (393)
T ss_dssp CCC-CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 753 22111 234567778889999999997
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=112.79 Aligned_cols=106 Identities=17% Similarity=0.111 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--cCC-CCeEEEEEceeeee-cCCCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~~D~iv 95 (306)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. +++ .++++++.+|+.+. ....++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 45789999999999999999986 67899999999 899999998754 234 35799999998764 33347899999
Q ss_pred EcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
++.......... ....++..+.+.|+|||+++
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv 186 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFV 186 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEE
Confidence 986543211111 12568888899999999997
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.9e-12 Score=105.51 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=74.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC---CCceeeE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDI 93 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~D~ 93 (306)
.+.+|.+|||+|||+|.++..+|+. | ..+|+|+|.+ .|++.+.+.++.. .++.++.+|+..... ..++||+
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceEE
Confidence 4788999999999999999999883 3 5699999999 7876555555443 369999999876431 1368999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++.. .......+...+.++|||||.++
T Consensus 150 I~~d~a-----~~~~~~il~~~~~~~LkpGG~lv 178 (232)
T 3id6_C 150 LYVDIA-----QPDQTDIAIYNAKFFLKVNGDML 178 (232)
T ss_dssp EEECCC-----CTTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEecCC-----ChhHHHHHHHHHHHhCCCCeEEE
Confidence 999853 12333444555666999999987
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-13 Score=113.26 Aligned_cols=105 Identities=18% Similarity=0.078 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHH----HHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIV----EANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~----~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
..++.+|||+|||+|.++..+++.+ ..+|+|+|+| +|++.+.+.+ ...+++ +++++++|+.+++++.+. |.+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCSCCCE-EEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCCCCCC-CEE
Confidence 5678899999999999999999963 5699999999 8877543333 345553 699999999998876566 877
Q ss_pred EEcccccccC--CcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~--~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+......... +..+...++.++.++|||||.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFL 137 (218)
T ss_dssp EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEE
T ss_pred EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEE
Confidence 7432101000 11122678899999999999987
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=115.11 Aligned_cols=104 Identities=19% Similarity=0.182 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeee--cCCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~iv~~~ 98 (306)
.+..+|||||||+|.++..+++. +..+++++|..++++.|++++...++.++++++.+|+.+. ++| ++||+|++..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 46689999999999999999884 4559999999889999999998888878899999999876 355 7899999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+.. .......+++++.+.|+|||+++
T Consensus 257 vlh~~-~~~~~~~~l~~~~~~L~pgG~l~ 284 (363)
T 3dp7_A 257 FLDCF-SEEEVISILTRVAQSIGKDSKVY 284 (363)
T ss_dssp CSTTS-CHHHHHHHHHHHHHHCCTTCEEE
T ss_pred hhhhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 54433 33455678999999999999987
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=113.43 Aligned_cols=105 Identities=20% Similarity=0.104 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH---cCCCCeEEEEEceeeeecC--CCceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEA---NGFSNVITVLKGKIEEIEL--PVTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~~--~~~~~D~i 94 (306)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. .....+++++.+|+.++.. +.++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 56789999999999999999986 46699999999 899999987642 2223579999999987653 35799999
Q ss_pred EEcccccccCCcchH--HHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENML--NTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~--~~~l~~~~~~L~p~G~~i 127 (306)
+++........ ..+ ..++..+.++|+|||+++
T Consensus 174 i~d~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~lv 207 (304)
T 3bwc_A 174 IIDTTDPAGPA-SKLFGEAFYKDVLRILKPDGICC 207 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEE
T ss_pred EECCCCccccc-hhhhHHHHHHHHHHhcCCCcEEE
Confidence 99765332111 111 578889999999999997
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-12 Score=107.51 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=79.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCC------CEEEEEech-HHHHHHHHHHHHcCC----CCeEEEEEceeeeec---
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGA------AHVYAVECS-QMANMAKQIVEANGF----SNVITVLKGKIEEIE--- 85 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~------~~v~~iD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~--- 85 (306)
...++.+|||+|||+|.++..+++... .+|+++|.+ ++++.|+++++.+++ .++++++.+|+.+..
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 467889999999999999999998532 599999999 899999999988873 357999999987753
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.++||+|++...... ++..+.++|+|||+++
T Consensus 157 ~~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv 190 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASE---------LPEILVDLLAENGKLI 190 (227)
T ss_dssp HHHHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEE
T ss_pred CccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEE
Confidence 33468999998753221 2356678999999987
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=114.04 Aligned_cols=106 Identities=18% Similarity=0.126 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--cCC-CCeEEEEEceeeee-cCCCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~~D~iv 95 (306)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. +++ .++++++.+|+.+. ....++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999986 56799999999 899999998754 333 35799999998764 23347899999
Q ss_pred EcccccccCCcc--hHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~--~~~~~l~~~~~~L~p~G~~i 127 (306)
++.......... ....++..+.++|+|||+++
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv 202 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFS 202 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 976432111001 12578888999999999997
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.5e-12 Score=109.01 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCC---cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----------C
Q 021852 23 KDKVVLDVGAGT---GILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----------L 86 (306)
Q Consensus 23 ~~~~VLDlG~G~---G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 86 (306)
+..+|||||||+ |.++..+++. +..+|+++|.| .|++.|++++... ++++++.+|+.+.. +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccC
Confidence 457999999999 9887777663 34599999999 8999999887432 47999999997531 3
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+..++|+|++..+.+++..+ ....++.++.+.|+|||.++
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~ 193 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLF 193 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEE
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEE
Confidence 33589999998766666443 57889999999999999987
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=116.96 Aligned_cols=110 Identities=19% Similarity=0.155 Sum_probs=86.0
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
....++.... ..++.+|||+|||+|.+++.+++.+. .+|+|+|++ .|++.|+++++.+++.++++++++|+.+++.+
T Consensus 205 ~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~ 283 (373)
T 3tm4_A 205 SIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY 283 (373)
T ss_dssp HHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT
T ss_pred HHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc
Confidence 3444444444 67889999999999999999999764 389999999 89999999999999977899999999998877
Q ss_pred CceeeEEEEcccccccC-Cc----chHHHHHHHHhhcc
Q 021852 88 VTKVDIIISEWMGYFLL-FE----NMLNTVLYARDKWL 120 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~-~~----~~~~~~l~~~~~~L 120 (306)
.++||+|++++...... .. .....+++.+.++|
T Consensus 284 ~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 284 VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 68999999987522111 11 12356777788877
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.7e-12 Score=113.17 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHc--CC-CCeEEEEEceeeeec--CCCceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~--~~~~~~D~i 94 (306)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++... ++ ..+++++.+|+.+.. .+.++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 46789999999999999999986 45699999999 8999999987652 44 257999999987752 334789999
Q ss_pred EEcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
+++........+. ....++..+.++|+|||+++
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv 232 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVC 232 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEE
Confidence 9976432211111 13678889999999999997
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=118.80 Aligned_cols=103 Identities=21% Similarity=0.216 Sum_probs=85.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----CCceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~D~iv~~ 97 (306)
++.+|||+|||+|.+++.+++. +.+|+++|++ .+++.|+++++.|++.+ ++++.+|+.++.. ...+||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 7889999999999999999997 6799999999 89999999999999965 9999999987632 14689999998
Q ss_pred ccccccCCc------chHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFE------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~------~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.-+..... .....++..+.++|+|||.++
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 322 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILA 322 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 753322111 344567788889999999987
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=114.38 Aligned_cols=106 Identities=22% Similarity=0.235 Sum_probs=75.8
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEE-Eceeeeec--
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVL-KGKIEEIE-- 85 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~-- 85 (306)
...+++.......++.+|||+|||||.++..+++.|+++|+|+|.| +|++.+.+. + .++... ..++..+.
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~---~rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D---DRVRSMEQYNFRYAEPV 145 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C---TTEEEECSCCGGGCCGG
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C---cccceecccCceecchh
Confidence 3445555443345788999999999999999999998999999999 898875432 1 133332 33444433
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++..+||+|+++.... .+..++.++.++|+|||.++
T Consensus 146 ~l~~~~fD~v~~d~sf~------sl~~vL~e~~rvLkpGG~lv 182 (291)
T 3hp7_A 146 DFTEGLPSFASIDVSFI------SLNLILPALAKILVDGGQVV 182 (291)
T ss_dssp GCTTCCCSEEEECCSSS------CGGGTHHHHHHHSCTTCEEE
T ss_pred hCCCCCCCEEEEEeeHh------hHHHHHHHHHHHcCcCCEEE
Confidence 3434599999975321 34678888999999999987
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=117.51 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=86.3
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
+.+.......++.+|||+|||+|.++..+++.+. .+|+++|.| .+++.|++++..+++. ++++.+|+.+.. .++
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~--~~~ 261 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV--KGR 261 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC--CSC
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc--cCC
Confidence 3343333334567999999999999999998753 499999999 8999999999998874 567888876543 479
Q ss_pred eeEEEEcccccccC--CcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~--~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+|+++++.+... .......++..+.++|+|||.++
T Consensus 262 fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~ 300 (343)
T 2pjd_A 262 FDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELR 300 (343)
T ss_dssp EEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred eeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 99999987533211 23456788999999999999987
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.8e-12 Score=112.95 Aligned_cols=106 Identities=23% Similarity=0.215 Sum_probs=86.0
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++.+|||+|||+|.++..+++.. ..+++++|+..+++.|++++..+++.++++++.+|+.+ .++ ..||+|++.
T Consensus 178 ~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~ 255 (374)
T 1qzz_A 178 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLS 255 (374)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEE
T ss_pred CCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC-CCCCEEEEe
Confidence 345678899999999999999998853 45999999977999999999999987789999999876 345 359999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+.. .......++..+.+.|+|||+++
T Consensus 256 ~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~ 284 (374)
T 1qzz_A 256 FVLLNW-SDEDALTILRGCVRALEPGGRLL 284 (374)
T ss_dssp SCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccCC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 654433 22333578999999999999887
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.6e-12 Score=105.91 Aligned_cols=98 Identities=21% Similarity=0.212 Sum_probs=78.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CC-CEEEEEech-HHHHHHHHHHHHcCC----CCeEEEEEceeeeecCCCceeeE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECS-QMANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g~-~~v~~iD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
..++.+|||+|||+|.++..+++. |. .+|+++|++ .+++.+++++..++. .++++++.+|+.....+.++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 678899999999999999999885 43 499999999 899999999988764 35799999998765444568999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..... .++..+.++|+|||+++
T Consensus 155 i~~~~~~~---------~~~~~~~~~LkpgG~lv 179 (226)
T 1i1n_A 155 IHVGAAAP---------VVPQALIDQLKPGGRLI 179 (226)
T ss_dssp EEECSBBS---------SCCHHHHHTEEEEEEEE
T ss_pred EEECCchH---------HHHHHHHHhcCCCcEEE
Confidence 99865321 12346678999999987
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=111.28 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=87.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++.+|||||||+|.++..+++. +..+++++|+..+++.|+++++.++++++++++.+|+.+.+++. .|+|++.
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~v~~~ 263 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFC 263 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC--CSEEEEE
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC--CCEEEEe
Confidence 34567889999999999999999885 34599999997799999999999998878999999998775542 4999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+.. .......+++.+.+.|+|||+++
T Consensus 264 ~vlh~~-~d~~~~~~l~~~~~~L~pgG~l~ 292 (359)
T 1x19_A 264 RILYSA-NEQLSTIMCKKAFDAMRSGGRLL 292 (359)
T ss_dssp SCGGGS-CHHHHHHHHHHHHTTCCTTCEEE
T ss_pred chhccC-CHHHHHHHHHHHHHhcCCCCEEE
Confidence 654433 22347789999999999999986
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-12 Score=107.29 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=78.6
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC-ceee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVD 92 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~D 92 (306)
+.......++.+|||+|||+|.++..+++.+..+|+++|.+ .+++.|+++++.+++.+ ++++.+|.. ..++. .+||
T Consensus 83 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~-~~~~~~~~fD 160 (235)
T 1jg1_A 83 MLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGS-KGFPPKAPYD 160 (235)
T ss_dssp HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGG-GCCGGGCCEE
T ss_pred HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcc-cCCCCCCCcc
Confidence 33334567889999999999999999998532699999999 89999999999998854 999999973 23332 3599
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|++......+ ...+.+.|+|||+++
T Consensus 161 ~Ii~~~~~~~~---------~~~~~~~L~pgG~lv 186 (235)
T 1jg1_A 161 VIIVTAGAPKI---------PEPLIEQLKIGGKLI 186 (235)
T ss_dssp EEEECSBBSSC---------CHHHHHTEEEEEEEE
T ss_pred EEEECCcHHHH---------HHHHHHhcCCCcEEE
Confidence 99986532222 125668999999986
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=113.09 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--cCC-CCeEEEEEceeeee-cCCCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~~D~iv 95 (306)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. +++ .++++++.+|+.+. ....++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 46789999999999999999986 45799999999 899999998765 344 36799999998763 33357899999
Q ss_pred EcccccccCCc-chHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~l~~~~~~L~p~G~~i 127 (306)
++........+ .....++..+.++|+|||+++
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv 206 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLC 206 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEE
Confidence 97643221111 112467888899999999997
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=113.56 Aligned_cols=102 Identities=12% Similarity=0.180 Sum_probs=80.0
Q ss_pred CEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEcccc
Q 021852 25 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 100 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~ 100 (306)
.+|||||||+|.++..+++ .+..+|+++|++ .+++.|++++..+. ..+++++.+|..++. .+.++||+|+++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 3999999999999999998 555599999999 89999999875432 357999999998753 345789999998643
Q ss_pred cccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
....... ....++..+.+.|+|||+++
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv 197 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYV 197 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEE
Confidence 3211111 12578889999999999987
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-12 Score=111.38 Aligned_cols=103 Identities=18% Similarity=0.060 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+..+|||+|||+|.++..+++ .+..+++++|..++++.|++++...++.++++++.+|+. .++|. +||+|++..+.
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 4568999999999999999988 445589999998899999999999998888999999997 33453 89999997654
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. .......+++++.+.|+|||+++
T Consensus 246 h~~-~~~~~~~~l~~~~~~L~pgG~l~ 271 (332)
T 3i53_A 246 HDW-DDLSAVAILRRCAEAAGSGGVVL 271 (332)
T ss_dssp GGS-CHHHHHHHHHHHHHHHTTTCEEE
T ss_pred ccC-CHHHHHHHHHHHHHhcCCCCEEE
Confidence 433 22345789999999999999987
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=111.03 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=87.3
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
.....++.+|||+|||+|.++..+++. +..+++++|...+++.|++++...++.++++++.+|+. .++|. .||+|++
T Consensus 197 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~ 274 (369)
T 3gwz_A 197 AYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLI 274 (369)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEE
T ss_pred hCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEh
Confidence 344567889999999999999999885 45599999997799999999999998889999999998 34453 8999999
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.+.. .......+++.+.+.|+|||+++
T Consensus 275 ~~vlh~~-~d~~~~~~L~~~~~~L~pgG~l~ 304 (369)
T 3gwz_A 275 KHVLHDW-DDDDVVRILRRIATAMKPDSRLL 304 (369)
T ss_dssp ESCGGGS-CHHHHHHHHHHHHTTCCTTCEEE
T ss_pred hhhhccC-CHHHHHHHHHHHHHHcCCCCEEE
Confidence 7654433 22334478999999999999987
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=115.02 Aligned_cols=106 Identities=22% Similarity=0.225 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHc--CC-CCeEEEEEceeeee-cCCCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEAN--GF-SNVITVLKGKIEEI-ELPVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~-~~~~~~~D~iv 95 (306)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++... ++ .++++++.+|+.+. ....++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 45689999999999999999986 46799999999 8999999987643 33 35799999998764 22357899999
Q ss_pred EcccccccCCcchH-HHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENML-NTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~l~~~~~~L~p~G~~i 127 (306)
++............ ..++..+.++|+|||+++
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv 219 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILS 219 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEE
Confidence 98653321111222 678888999999999997
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.8e-12 Score=113.73 Aligned_cols=99 Identities=10% Similarity=0.169 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-ecC-CCceeeEEEEc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-IEL-PVTKVDIIISE 97 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~~~D~iv~~ 97 (306)
.++.+|||+| |+|.+++.+++.+. .+|+++|++ .|++.|+++++.+++. +++++.+|+.+ ++. ..++||+|+++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEEC
Confidence 4688999999 99999999998765 799999998 9999999999999986 79999999988 542 23689999998
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIV 126 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ 126 (306)
++.... ....++..+.+.|+|||.+
T Consensus 249 ~p~~~~----~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 249 PPETLE----AIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp CCSSHH----HHHHHHHHHHHTBCSTTCE
T ss_pred CCCchH----HHHHHHHHHHHHcccCCeE
Confidence 752211 2578888999999999943
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=107.20 Aligned_cols=90 Identities=23% Similarity=0.297 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||+|||+|.++..+++. +++|.+ .+++.++++ +++++.+|+.+++++.++||+|++..+.
T Consensus 46 ~~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l 112 (219)
T 1vlm_A 46 LPEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTI 112 (219)
T ss_dssp CCSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CCCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchH
Confidence 44889999999999999888664 999999 899988775 3788999998887777799999997543
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++ .....++..+.++|+|||.++
T Consensus 113 ~~~---~~~~~~l~~~~~~L~pgG~l~ 136 (219)
T 1vlm_A 113 CFV---DDPERALKEAYRILKKGGYLI 136 (219)
T ss_dssp GGS---SCHHHHHHHHHHHEEEEEEEE
T ss_pred hhc---cCHHHHHHHHHHHcCCCcEEE
Confidence 333 466789999999999999987
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-12 Score=118.78 Aligned_cols=110 Identities=15% Similarity=0.036 Sum_probs=86.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i 94 (306)
....++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++++|+. +.++++|+.++. ...++||+|
T Consensus 97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~I 174 (464)
T 3m6w_A 97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRV 174 (464)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEE
T ss_pred cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEE
Confidence 34568899999999999999999874 34699999999 8999999999999995 899999988765 124789999
Q ss_pred EEcccccccC---C---------cc-------hHHHHHHHHhhcccCCeEEEecC
Q 021852 95 ISEWMGYFLL---F---------EN-------MLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 95 v~~~~~~~~~---~---------~~-------~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
++++..+... . .. ....++..+.++|||||+++-+.
T Consensus 175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9876432211 0 00 12568888899999999998433
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=110.71 Aligned_cols=105 Identities=24% Similarity=0.296 Sum_probs=85.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
...++.+|||+|||+|.++..+++.+ ..+++++|+..+++.|++++..+++.++++++.+|+.+ .++ ..||+|++..
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~ 257 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSF 257 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEES
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC-CCccEEEEcc
Confidence 45678899999999999999998854 45899999877999999999999987789999999876 344 4599999875
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+.. .......++..+.+.|+|||.++
T Consensus 258 vl~~~-~~~~~~~~l~~~~~~L~pgG~l~ 285 (360)
T 1tw3_A 258 VLLNW-PDHDAVRILTRCAEALEPGGRIL 285 (360)
T ss_dssp CGGGS-CHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cccCC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 54433 22334578999999999999887
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-12 Score=105.90 Aligned_cols=94 Identities=24% Similarity=0.280 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee--ecCCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~D~iv~~~ 98 (306)
.++.+|||+|||+|.++..+++.| .+|+++|++ .+++.++++. .+++.+|+.+ .++++++||+|++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~ 101 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGD 101 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEES
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECC
Confidence 578899999999999999999886 699999999 8888887542 2678888876 445567999999965
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+++ .+...++..+.++|+|||.++
T Consensus 102 ~l~~~---~~~~~~l~~~~~~L~~gG~l~ 127 (230)
T 3cc8_A 102 VLEHL---FDPWAVIEKVKPYIKQNGVIL 127 (230)
T ss_dssp CGGGS---SCHHHHHHHTGGGEEEEEEEE
T ss_pred hhhhc---CCHHHHHHHHHHHcCCCCEEE
Confidence 43333 456789999999999999987
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-12 Score=103.27 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||+|||+|.++..+++.+ +|+|+|+| .|++. .++++++.+|+.+ .++.++||+|++++..
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~ 88 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQESVDVVVFNPPY 88 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCGGGCSEEEECCCC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhh-hcccCCCCEEEECCCC
Confidence 567899999999999999999987 99999999 78776 2468899999987 3455899999998653
Q ss_pred cccCC------cchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLF------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.... ......++..+.+.| |||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~ 120 (170)
T 3q87_B 89 VPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLY 120 (170)
T ss_dssp BTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEE
T ss_pred ccCCccccccCCcchHHHHHHHHhhC-CCCEEE
Confidence 32111 112234566666667 999986
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-12 Score=110.43 Aligned_cols=86 Identities=24% Similarity=0.338 Sum_probs=71.5
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.......++.+|||+|||+|.++..+++.+. +|+|+|++ .|++.+++++..++..++++++++|+.+++++
T Consensus 16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~-- 92 (285)
T 1zq9_A 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-- 92 (285)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--
Confidence 344454445567889999999999999999999854 99999999 89999999987777656799999999877654
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
+||+|++++.
T Consensus 93 ~fD~vv~nlp 102 (285)
T 1zq9_A 93 FFDTCVANLP 102 (285)
T ss_dssp CCSEEEEECC
T ss_pred hhcEEEEecC
Confidence 7999999864
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.2e-12 Score=111.70 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--cC-C-CCeEEEEEceeeee-cCCCceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEA--NG-F-SNVITVLKGKIEEI-ELPVTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~--~~-~-~~~v~~~~~d~~~~-~~~~~~~D~i 94 (306)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. .+ + .++++++.+|+.+. ....++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 46689999999999999999986 46799999999 899999998764 22 2 35799999999774 3335789999
Q ss_pred EEcccccc---cCCcch-HHHHHHHHhhcccCCeEEEe
Q 021852 95 ISEWMGYF---LLFENM-LNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 95 v~~~~~~~---~~~~~~-~~~~l~~~~~~L~p~G~~ip 128 (306)
+++..... ...... ...++..+.++|+|||+++.
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 193 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEE
Confidence 99865432 100111 36788899999999999983
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.7e-12 Score=105.09 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=77.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHH-cCC------CEEEEEech-HHHHHHHHHHHHcCC----CCeEEEEEceeeeecCC
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAK-AGA------AHVYAVECS-QMANMAKQIVEANGF----SNVITVLKGKIEEIELP 87 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~-~g~------~~v~~iD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~ 87 (306)
...++.+|||+|||+|.++..+++ .+. .+|+++|.+ ++++.|++++..++. .++++++.+|..+. ++
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~ 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG-YP 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-CG
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC-CC
Confidence 467889999999999999999988 443 599999999 899999999887651 14699999998773 33
Q ss_pred C-ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 V-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~-~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ++||+|++...... +...+.+.|+|||+++
T Consensus 160 ~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv 191 (227)
T 1r18_A 160 PNAPYNAIHVGAAAPD---------TPTELINQLASGGRLI 191 (227)
T ss_dssp GGCSEEEEEECSCBSS---------CCHHHHHTEEEEEEEE
T ss_pred cCCCccEEEECCchHH---------HHHHHHHHhcCCCEEE
Confidence 3 68999998754222 1255678999999986
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-12 Score=109.65 Aligned_cols=97 Identities=9% Similarity=0.112 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-----CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee---cC-CCcee
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI---EL-PVTKV 91 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-----g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~-~~~~~ 91 (306)
.++.+|||||||+|..+..+++. +..+|+|+|++ +|++.|+ ++.++++++++|+.+. +. +..+|
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~f 153 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAH 153 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCC
Confidence 35689999999999999999885 35699999999 8888776 2235799999999874 32 33479
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhh-cccCCeEEEecC
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDK-WLVDDGIVLPDK 130 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~-~L~p~G~~ip~~ 130 (306)
|+|+++.. + .....++.++.+ +|+|||+++...
T Consensus 154 D~I~~d~~-~-----~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 154 PLIFIDNA-H-----ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SEEEEESS-C-----SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred CEEEECCc-h-----HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 99998643 1 256778888887 999999998443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-12 Score=100.58 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=77.7
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CC-CEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec----
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE---- 85 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~-~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 85 (306)
.+.+.......++.+|||+|||+|.++..+++. |. .+|+++|.++++. . .+++++.+|+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----------~-~~~~~~~~d~~~~~~~~~ 79 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----------I-VGVDFLQGDFRDELVMKA 79 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----------C-TTEEEEESCTTSHHHHHH
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----------c-CcEEEEEcccccchhhhh
Confidence 334444344678899999999999999999886 53 6999999986322 1 36899999998875
Q ss_pred ----CCCceeeEEEEcccccccCCcc--h------HHHHHHHHhhcccCCeEEE
Q 021852 86 ----LPVTKVDIIISEWMGYFLLFEN--M------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ----~~~~~~D~iv~~~~~~~~~~~~--~------~~~~l~~~~~~L~p~G~~i 127 (306)
++.++||+|+++...+...... . ...++..+.++|+|||.++
T Consensus 80 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 133 (180)
T 1ej0_A 80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFV 133 (180)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 5667999999976533322110 1 1578888899999999987
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-12 Score=108.44 Aligned_cols=107 Identities=14% Similarity=0.070 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-H-HHHHH---HHHHHHcCCCCeEEEEEceeeeecCC-CceeeE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-Q-MANMA---KQIVEANGFSNVITVLKGKIEEIELP-VTKVDI 93 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~-~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~ 93 (306)
..++.+|||||||+|.++..+++ .+..+|+|+|+| + |++.| ++++...+++ +++++.+|+++++.. .+.+|.
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~ 100 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADS 100 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEE
Confidence 35788999999999999999986 344589999998 5 66655 7777777875 699999999887421 145666
Q ss_pred EEEcccccccC--CcchHHHHHHHHhhcccCCeEEEe
Q 021852 94 IISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 94 iv~~~~~~~~~--~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
|.++....... .....+.++.++.++|||||.++.
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 66543211110 001124678899999999999873
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.7e-12 Score=115.91 Aligned_cols=111 Identities=19% Similarity=0.040 Sum_probs=86.6
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i 94 (306)
....++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++++|+. ++.++++|+.++. ...++||+|
T Consensus 101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~FD~I 179 (456)
T 3m4x_A 101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGFFDRI 179 (456)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTCEEEE
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccccCCEE
Confidence 34678999999999999999998873 34699999999 8999999999999996 5999999998764 123789999
Q ss_pred EEcccccccC--C-cc----------------hHHHHHHHHhhcccCCeEEEecC
Q 021852 95 ISEWMGYFLL--F-EN----------------MLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 95 v~~~~~~~~~--~-~~----------------~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
++++..+... . .. ....++..+.++|||||+++-+.
T Consensus 180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9986532211 0 00 11267888889999999998443
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-12 Score=118.08 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=82.4
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEE-EEEceeeeecCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVIT-VLKGKIEEIELP 87 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~ 87 (306)
.+.+.+.......++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|+++ +...... +...+.+.++++
T Consensus 94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT 168 (416)
T ss_dssp HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC
Confidence 3444455555567889999999999999999999876 99999999 899888765 4422111 223344445455
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++||+|++..+.+++ .++..++..+.++|+|||+++
T Consensus 169 ~~~fD~I~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~ 205 (416)
T 4e2x_A 169 EGPANVIYAANTLCHI---PYVQSVLEGVDALLAPDGVFV 205 (416)
T ss_dssp HCCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEE
T ss_pred CCCEEEEEECChHHhc---CCHHHHHHHHHHHcCCCeEEE
Confidence 6899999997654443 578899999999999999997
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=109.71 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=84.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
...+ .+|||+|||+|.++..+++. +..+++++|...+++.|++++...++.++++++.+|+.+ +++ ++||+|++..
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~ 241 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSR 241 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEES
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEch
Confidence 3445 89999999999999999884 455999999977899999988877777789999999977 455 7899999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+.. .......+++.+.+.|+|||+++
T Consensus 242 vl~~~-~~~~~~~~l~~~~~~L~pgG~l~ 269 (334)
T 2ip2_A 242 IIGDL-DEAASLRLLGNCREAMAGDGRVV 269 (334)
T ss_dssp CGGGC-CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred hccCC-CHHHHHHHHHHHHHhcCCCCEEE
Confidence 54433 23344588999999999999987
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=102.09 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.++.+|||||||+|.+++.+. +..+|+|+|++ .|++.+++++..++. +..+..+|....+++ +++|++++..+.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~-~~~DvvLllk~l 178 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPA-EAGDLALIFKLL 178 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCC-CBCSEEEEESCH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCC-CCcchHHHHHHH
Confidence 567899999999999999888 67799999999 999999999999885 688999998877655 799999987655
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++..+..- ..+ ++...|++++++|
T Consensus 179 h~LE~q~~~-~~~-~ll~aL~~~~vvV 203 (253)
T 3frh_A 179 PLLEREQAG-SAM-ALLQSLNTPRMAV 203 (253)
T ss_dssp HHHHHHSTT-HHH-HHHHHCBCSEEEE
T ss_pred HHhhhhchh-hHH-HHHHHhcCCCEEE
Confidence 555333221 233 5556889999987
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=115.60 Aligned_cols=106 Identities=13% Similarity=0.011 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC-CCceeeEEEEcc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEW 98 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~iv~~~ 98 (306)
++.+|||+|||+|..+..+|+. + ..+|+|+|++ .+++.++++++++|+. +++++++|+.++.. ..++||+|++++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence 8899999999999999999884 3 4699999999 8999999999999985 59999999987652 347899999976
Q ss_pred cccccC----Cc---------------chHHHHHHHHhhcccCCeEEEec
Q 021852 99 MGYFLL----FE---------------NMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 99 ~~~~~~----~~---------------~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
..+... .. .....++..+.++|||||+++-+
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvys 245 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS 245 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 432210 00 01236788888999999999833
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=113.14 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=85.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 93 (306)
....++.+|||+|||+|..+..+++. +. .+|+|+|++ .+++.++++++++|+. +++++++|+.++. ++.++||+
T Consensus 255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEEVADK 333 (450)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSSCEEE
T ss_pred cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhccCCCCE
Confidence 34678899999999999999999883 33 699999999 8999999999999985 5999999998765 44478999
Q ss_pred EEEcccccccCC---cch----------------HHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLF---ENM----------------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~---~~~----------------~~~~l~~~~~~L~p~G~~i 127 (306)
|++++..+.... .++ ...++..+.++|||||.++
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 386 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLL 386 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 998754332210 111 1567888899999999998
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=105.20 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCcH----HHHHHHHc-C----CCEEEEEech-HHHHHHHHHHH--------------H---------cC
Q 021852 23 KDKVVLDVGAGTGI----LSLFCAKA-G----AAHVYAVECS-QMANMAKQIVE--------------A---------NG 69 (306)
Q Consensus 23 ~~~~VLDlG~G~G~----l~~~~a~~-g----~~~v~~iD~s-~~~~~a~~~~~--------------~---------~~ 69 (306)
++.+|||+|||||. +++.+++. + ..+|+|+|+| +|++.|++.+. + .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 67777764 4 1389999999 99999988641 0 01
Q ss_pred -------CCCeEEEEEceeeeecCC-CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 -------FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 -------~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.++|+|.+.|+.+.+++ .++||+|+|..+..++ .......++..+.+.|+|||.++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~ 249 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLF 249 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 113589999999875444 4789999995443333 34456789999999999999997
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=106.69 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcC--C-CCeEEEEEceeeeec-CCCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~-~~~~~~D~iv 95 (306)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++...+ + .++++++.+|+.+.. ...++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 46789999999999999999986 46799999999 89999999875432 2 257999999987642 2247899999
Q ss_pred EcccccccCCcchH-HHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENML-NTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~l~~~~~~L~p~G~~i 127 (306)
++............ ..+++.+.+.|+|||+++
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv 189 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCV 189 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEE
Confidence 97643322111111 678899999999999997
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-12 Score=110.43 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=70.1
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE-ceeeee---
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK-GKIEEI--- 84 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~--- 84 (306)
...+++.......++.+|||||||+|.++..+++.|+.+|+|+|+| +|++.|+++.. ++.... .++..+
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~ 97 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLA 97 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGG
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHh
Confidence 4456666544445678999999999999999999988899999999 89988765422 222211 122111
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++...+|.+.++..... +..++.++.++|||||.++
T Consensus 98 ~~~~~~~d~~~~D~v~~~------l~~~l~~i~rvLkpgG~lv 134 (232)
T 3opn_A 98 DFEQGRPSFTSIDVSFIS------LDLILPPLYEILEKNGEVA 134 (232)
T ss_dssp GCCSCCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEE
T ss_pred HcCcCCCCEEEEEEEhhh------HHHHHHHHHHhccCCCEEE
Confidence 122122455555432111 2568888999999999987
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=101.26 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=71.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc-C--CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec-----------
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA-G--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE----------- 85 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~-g--~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 85 (306)
.+.++.+|||+|||+|.++..+++. + ..+|+|+|++++. .. .+++++++|+.+..
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 19 FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PI-PNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CC-TTCEEEECCTTTTSSCCC-------
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CC-CCceEEEccccchhhhhhccccccc
Confidence 3567889999999999999999984 4 4699999999641 12 35889999987764
Q ss_pred --------------CCCceeeEEEEcccccccCC-cch-------HHHHHHHHhhcccCCeEEE
Q 021852 86 --------------LPVTKVDIIISEWMGYFLLF-ENM-------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 --------------~~~~~~D~iv~~~~~~~~~~-~~~-------~~~~l~~~~~~L~p~G~~i 127 (306)
++..+||+|+++...+.... ..+ ...++..+.++|+|||.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv 151 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYI 151 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 45578999999864332110 011 1236778889999999987
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=101.53 Aligned_cols=110 Identities=16% Similarity=0.281 Sum_probs=77.1
Q ss_pred HHHHHHHHHHH---hcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 6 VRTKSYQNVIY---QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 6 ~R~~~~~~ai~---~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
-|.++..+.+. +...+.++.+|||+|||+|.++..+++. ..+|+|+|++++. .. .+++++++|+.
T Consensus 5 yr~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~----------~~-~~v~~~~~D~~ 72 (191)
T 3dou_A 5 LRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME----------EI-AGVRFIRCDIF 72 (191)
T ss_dssp TTSHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC----------CC-TTCEEEECCTT
T ss_pred CCCcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc----------cC-CCeEEEEcccc
Confidence 35555555554 2233568899999999999999999998 5599999998531 22 36899999987
Q ss_pred eecC--------C---CceeeEEEEcccccccCCc--------chHHHHHHHHhhcccCCeEEE
Q 021852 83 EIEL--------P---VTKVDIIISEWMGYFLLFE--------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~~--------~---~~~~D~iv~~~~~~~~~~~--------~~~~~~l~~~~~~L~p~G~~i 127 (306)
+... + .++||+|+|++........ .....++..+.++|+|||.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv 136 (191)
T 3dou_A 73 KETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVL 136 (191)
T ss_dssp SSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 7531 1 1389999998643221110 123456777889999999987
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=107.40 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=65.8
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.|.......++.+|||+|||+|.++..+++.+ .+|+|+|++ .+++.|+++++.+++ ++++++.+|+.++++ .+|
T Consensus 32 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~--~~~ 107 (299)
T 2h1r_A 32 DKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF--PKF 107 (299)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--CCC
T ss_pred HHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--ccC
Confidence 334333456788999999999999999999974 499999999 899999999988887 579999999987754 489
Q ss_pred eEEEEccc
Q 021852 92 DIIISEWM 99 (306)
Q Consensus 92 D~iv~~~~ 99 (306)
|+|++++.
T Consensus 108 D~Vv~n~p 115 (299)
T 2h1r_A 108 DVCTANIP 115 (299)
T ss_dssp SEEEEECC
T ss_pred CEEEEcCC
Confidence 99999865
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-12 Score=113.54 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=74.3
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHH-HHcCCCCeEEEE--EceeeeecCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV-EANGFSNVITVL--KGKIEEIELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~~ 91 (306)
+.+...+.++.+|||+|||+|.++..+++. .+|+|+|.++|+..+++.. .......+++++ ++|+++++ +++|
T Consensus 74 i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~f 149 (276)
T 2wa2_A 74 IDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQA 149 (276)
T ss_dssp HHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCC
T ss_pred HHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCc
Confidence 333345568899999999999999999998 5899999987643332210 001111268899 88998764 5799
Q ss_pred eEEEEcccccccCCc-chHH---HHHHHHhhcccCCe--EEE
Q 021852 92 DIIISEWMGYFLLFE-NMLN---TVLYARDKWLVDDG--IVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~-~~~~---~~l~~~~~~L~p~G--~~i 127 (306)
|+|+|+.. +..... .+.. .++..+.++|+||| .++
T Consensus 150 D~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v 190 (276)
T 2wa2_A 150 DTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFC 190 (276)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred CEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEE
Confidence 99999865 322111 1111 26788889999999 876
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=111.37 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=91.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------------CEE
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHV 49 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~---------------------------------------~~v 49 (306)
+....+|.......++.+|||+|||+|.+++.+|..++ .+|
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 45666777667777889999999999999999987532 379
Q ss_pred EEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc--cCCcchHHHHHHHHhhcccC--Ce
Q 021852 50 YAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF--LLFENMLNTVLYARDKWLVD--DG 124 (306)
Q Consensus 50 ~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~--~~~~~~~~~~l~~~~~~L~p--~G 124 (306)
+|+|++ .+++.|++++..+++.+++++.++|+.++..+ .++|+|++++. |+ +..+..+..+...+.+.|++ |+
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPP-yg~rl~~~~~l~~ly~~lg~~lk~~~g~ 338 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPP-YGERLEDKDSVKQLYKELGYAFRKLKNW 338 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHHHTSBSC
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCC-CcCccCCHHHHHHHHHHHHHHHhhCCCC
Confidence 999999 89999999999999987899999999988755 68999999975 32 11223455666666666665 55
Q ss_pred EE
Q 021852 125 IV 126 (306)
Q Consensus 125 ~~ 126 (306)
.+
T Consensus 339 ~~ 340 (385)
T 3ldu_A 339 SY 340 (385)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-11 Score=109.13 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=92.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------------CEE
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHV 49 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~---------------------------------------~~v 49 (306)
+....++.......++..|||.+||+|.+++.+|..+. .+|
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 45666776666777889999999999999999887432 359
Q ss_pred EEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc-ccCCcchHHHHHHHHhhcccC--CeE
Q 021852 50 YAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY-FLLFENMLNTVLYARDKWLVD--DGI 125 (306)
Q Consensus 50 ~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~-~~~~~~~~~~~l~~~~~~L~p--~G~ 125 (306)
+|+|++ .|++.|+++++.+|+.++++++++|+.++..+ .+||+|++++.-. -+..+..+..+...+.+.|++ ||.
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~ 338 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS 338 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 999999 89999999999999988899999999998755 6899999997521 222335666777766666665 666
Q ss_pred EE
Q 021852 126 VL 127 (306)
Q Consensus 126 ~i 127 (306)
+.
T Consensus 339 ~~ 340 (384)
T 3ldg_A 339 QF 340 (384)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=104.76 Aligned_cols=112 Identities=9% Similarity=0.034 Sum_probs=85.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
+.|...+... +.+..+|||||||+|.+++.++.. +..+|+|+|++ .|++.+++++..+|+. .++...|...-.
T Consensus 120 D~fY~~i~~~--i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~- 194 (281)
T 3lcv_B 120 DEFYRELFRH--LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR- 194 (281)
T ss_dssp HHHHHHHGGG--SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC-
T ss_pred HHHHHHHHhc--cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC-
Confidence 3444445433 355779999999999999999885 67799999999 8999999999999984 677777876655
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+++|++++..+.+++..+.. ...+ .+...|+++|++|
T Consensus 195 p~~~~DvaL~lkti~~Le~q~k-g~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 195 LDEPADVTLLLKTLPCLETQQR-GSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp CCSCCSEEEETTCHHHHHHHST-THHH-HHHHHSSCSEEEE
T ss_pred CCCCcchHHHHHHHHHhhhhhh-HHHH-HHHHHhCCCCEEE
Confidence 4489999999876555533222 1333 5678899999998
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=111.92 Aligned_cols=99 Identities=13% Similarity=0.026 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCe-EEEEEceeeeecC--CCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNV-ITVLKGKIEEIEL--PVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~--~~~~~D~iv 95 (306)
.++.+|||++||+|.+++.+++ .|+++|+++|++ .+++.++++++.|++.++ ++++++|+.++.- ..++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 4678999999999999999998 366899999999 899999999999999776 9999999977531 136899999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++.+ ....+++.+.++|++||.++
T Consensus 131 lDP~g-------~~~~~l~~a~~~Lk~gGll~ 155 (392)
T 3axs_A 131 LDPFG-------TPVPFIESVALSMKRGGILS 155 (392)
T ss_dssp ECCSS-------CCHHHHHHHHHHEEEEEEEE
T ss_pred ECCCc-------CHHHHHHHHHHHhCCCCEEE
Confidence 99731 12347777778999999775
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=99.82 Aligned_cols=90 Identities=20% Similarity=0.128 Sum_probs=69.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.++..+++.|..+|+|+|++ .+++.|++++. +++++.+|+.++ + ++||+|+++++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~--~-~~~D~v~~~~p 119 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI--S-GKYDTWIMNPP 119 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC--C-CCEEEEEECCC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC--C-CCeeEEEECCC
Confidence 45788999999999999999999887799999999 89999988764 478999999885 3 78999999976
Q ss_pred ccccCCcchHHHHHHHHhhcc
Q 021852 100 GYFLLFENMLNTVLYARDKWL 120 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L 120 (306)
.+.... .....++..+.+.+
T Consensus 120 ~~~~~~-~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 120 FGSVVK-HSDRAFIDKAFETS 139 (200)
T ss_dssp C--------CHHHHHHHHHHE
T ss_pred chhccC-chhHHHHHHHHHhc
Confidence 444322 22345677777776
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.7e-11 Score=109.58 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||+|||+|.+++.+|+. +.+|+|+|.+ ++++.|+++++.|++. ++++.+|+.++. + .+||+|++++.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~-~-~~fD~Vv~dPP 362 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS-V-KGFDTVIVDPP 362 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC-C-TTCSEEEECCC
T ss_pred cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC-c-cCCCEEEEcCC
Confidence 567889999999999999999997 4599999999 8999999999999984 999999998874 3 38999999875
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-. +..+.+++.+. .|+|+|+++
T Consensus 363 r~-----g~~~~~~~~l~-~l~p~givy 384 (425)
T 2jjq_A 363 RA-----GLHPRLVKRLN-REKPGVIVY 384 (425)
T ss_dssp TT-----CSCHHHHHHHH-HHCCSEEEE
T ss_pred cc-----chHHHHHHHHH-hcCCCcEEE
Confidence 22 12233555543 489999886
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-11 Score=106.04 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
.++.+|||+|||+|.++..+++. +..+|+++|+| .+++.|+++. .++.++.+|+.+++++.++||+|++...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 57889999999999999999985 34599999999 8999987753 3578999999888777789999998532
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+.++.++|+|||.++
T Consensus 158 ----------~~~l~~~~~~L~pgG~l~ 175 (269)
T 1p91_A 158 ----------PCKAEELARVVKPGGWVI 175 (269)
T ss_dssp ----------CCCHHHHHHHEEEEEEEE
T ss_pred ----------hhhHHHHHHhcCCCcEEE
Confidence 124667789999999987
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.4e-11 Score=109.32 Aligned_cols=111 Identities=21% Similarity=0.115 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee--
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-- 84 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 84 (306)
++...+.+.......++.+|||+|||+|.+++.+++. ..+|+|+|.| ++++.|+++++.+++. +++++.+|+.+.
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhh
Confidence 3444444444445567889999999999999999997 5699999999 8999999999999985 799999999873
Q ss_pred --cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 --ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 --~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.++||+|++++.-..+ ..++..+. .++|+++++
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~-~~~p~~ivy 386 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAGA------AGVMQQII-KLEPIRIVY 386 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTCC------HHHHHHHH-HHCCSEEEE
T ss_pred hhhhhcCCCCEEEECCCCccH------HHHHHHHH-hcCCCeEEE
Confidence 2344689999999753222 13444443 367887764
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-11 Score=110.65 Aligned_cols=117 Identities=13% Similarity=0.144 Sum_probs=90.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------------CEE
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHV 49 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~---------------------------------------~~v 49 (306)
+....++.......++..|||.+||+|.+++.+|..+. .+|
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 45566676666777889999999999999999887432 359
Q ss_pred EEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccccc--CCcchHHHHHHHHhhcccC--Ce
Q 021852 50 YAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL--LFENMLNTVLYARDKWLVD--DG 124 (306)
Q Consensus 50 ~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~--~~~~~~~~~l~~~~~~L~p--~G 124 (306)
+|+|++ .|++.|+++++.+|+.++++++++|+.++..+ .+||+|++++. |+. ..+..+..+...+.+.|++ ||
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPP-Yg~rl~~~~~l~~ly~~lg~~lk~~~g~ 344 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPP-YGERLEDEEAVRQLYREMGIVYKRMPTW 344 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCC-CccccCCchhHHHHHHHHHHHHhcCCCC
Confidence 999999 89999999999999988899999999998755 68999999975 321 1123455566666566655 66
Q ss_pred EEE
Q 021852 125 IVL 127 (306)
Q Consensus 125 ~~i 127 (306)
.+.
T Consensus 345 ~~~ 347 (393)
T 3k0b_A 345 SVY 347 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=111.28 Aligned_cols=107 Identities=18% Similarity=0.042 Sum_probs=84.7
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~i 94 (306)
....++.+|||+|||+|..+..+++.+ ..+|+|+|++ .+++.++++++++++ +++++.+|+.++. ++.++||+|
T Consensus 242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~V 319 (429)
T 1sqg_A 242 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRI 319 (429)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEEE
T ss_pred cCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccCCCCEE
Confidence 345788999999999999999999854 3699999999 899999999999988 3789999988765 455789999
Q ss_pred EEcccccccC---Ccc---------h-------HHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLL---FEN---------M-------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~---~~~---------~-------~~~~l~~~~~~L~p~G~~i 127 (306)
++++..+... ..+ . ...++..+.++|||||+++
T Consensus 320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lv 371 (429)
T 1sqg_A 320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLV 371 (429)
T ss_dssp EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 9976433211 011 1 1467888889999999998
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-11 Score=99.14 Aligned_cols=98 Identities=24% Similarity=0.264 Sum_probs=70.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CC---------CEEEEEechHHHHHHHHHHHHcCCCCeEEEE-Eceeeeec--
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GA---------AHVYAVECSQMANMAKQIVEANGFSNVITVL-KGKIEEIE-- 85 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~---------~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~-- 85 (306)
..+.++.+|||+|||+|.++..+++. |. .+|+|+|++++. .+ .+++++ .+|+.+..
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~-~~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 18 QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PL-EGATFLCPADVTDPRTS 86 (196)
T ss_dssp CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CC-TTCEEECSCCTTSHHHH
T ss_pred CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cC-CCCeEEEeccCCCHHHH
Confidence 34578899999999999999999985 54 699999999531 12 357888 88876543
Q ss_pred ------CCCceeeEEEEcccccccCCc-chH-------HHHHHHHhhcccCCeEEE
Q 021852 86 ------LPVTKVDIIISEWMGYFLLFE-NML-------NTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ------~~~~~~D~iv~~~~~~~~~~~-~~~-------~~~l~~~~~~L~p~G~~i 127 (306)
+++++||+|+++...+..... .+. ..++..+.++|+|||.++
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 142 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFL 142 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 234689999997532321111 111 467888899999999987
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=117.64 Aligned_cols=104 Identities=22% Similarity=0.240 Sum_probs=77.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~ 97 (306)
..++.+|||||||.|.++..+|+.|+ .|+|||.+ .+++.|+..+..++.. ++++.+++++++. .+.++||+|+|.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEEC
Confidence 34568999999999999999999988 89999999 8999999999888743 6999999999873 455799999995
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+++........ +.++.+.|+++|..+
T Consensus 142 e~~ehv~~~~~~~~-~~~~~~tl~~~~~~~ 170 (569)
T 4azs_A 142 SVFHHIVHLHGIDE-VKRLLSRLADVTQAV 170 (569)
T ss_dssp SCHHHHHHHHCHHH-HHHHHHHHHHHSSEE
T ss_pred cchhcCCCHHHHHH-HHHHHHHhcccccee
Confidence 55444422221111 223445567766543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=108.93 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=78.0
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++.+|||||||+|.++..+++. +..+++++|.++++. +++++..++.++++++.+|+. .++| +||+|++.
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~ 254 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLK 254 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEE
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCC-CCCC--CCcEEEEe
Confidence 44567889999999999999999884 445899999985554 333444456678999999996 2334 89999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+.. .......+++++.+.|||||+++
T Consensus 255 ~vlh~~-~d~~~~~~L~~~~~~LkpgG~l~ 283 (348)
T 3lst_A 255 RILHNW-GDEDSVRILTNCRRVMPAHGRVL 283 (348)
T ss_dssp SCGGGS-CHHHHHHHHHHHHHTCCTTCEEE
T ss_pred hhccCC-CHHHHHHHHHHHHHhcCCCCEEE
Confidence 654433 22333689999999999999987
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-12 Score=111.83 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=72.3
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHH-HHcCCCCeEEEE--EceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV-EANGFSNVITVL--KGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~~D~iv 95 (306)
..+.++.+|||||||+|.++..+++. .+|+|+|.++|+..+++.. .......++.++ ++|+.+++ +++||+|+
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~ 145 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM 145 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence 45668899999999999999999987 5899999987633222110 001111157888 88988764 57999999
Q ss_pred EcccccccCCc-chHH---HHHHHHhhcccCCe--EEE
Q 021852 96 SEWMGYFLLFE-NMLN---TVLYARDKWLVDDG--IVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~-~~~~---~~l~~~~~~L~p~G--~~i 127 (306)
|++. +..... .+.. .++..+.++|+||| .++
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv 182 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFV 182 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEE
Confidence 9865 322111 1111 26788889999999 876
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-11 Score=108.18 Aligned_cols=104 Identities=19% Similarity=0.193 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCC------CcHHHHHHHH-c-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAG------TGILSLFCAK-A-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK 78 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G------~G~l~~~~a~-~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~ 78 (306)
...|.+.+... ..++.+||||||| +|..++.+++ . +..+|+|+|+| .|. . ..+++++++
T Consensus 203 ~~~Ye~lL~~l--~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~--~~~rI~fv~ 270 (419)
T 3sso_A 203 TPHYDRHFRDY--RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V--DELRIRTIQ 270 (419)
T ss_dssp HHHHHHHHGGG--TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G--CBTTEEEEE
T ss_pred HHHHHHHHHhh--cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h--cCCCcEEEE
Confidence 35666666532 3467899999999 6666666655 2 45699999999 762 1 125799999
Q ss_pred ceeeeecCC------CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 79 GKIEEIELP------VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 79 ~d~~~~~~~------~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+.++++. .++||+|+++.. +........+.++.++|||||+++
T Consensus 271 GDa~dlpf~~~l~~~d~sFDlVisdgs----H~~~d~~~aL~el~rvLKPGGvlV 321 (419)
T 3sso_A 271 GDQNDAEFLDRIARRYGPFDIVIDDGS----HINAHVRTSFAALFPHVRPGGLYV 321 (419)
T ss_dssp CCTTCHHHHHHHHHHHCCEEEEEECSC----CCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred ecccccchhhhhhcccCCccEEEECCc----ccchhHHHHHHHHHHhcCCCeEEE
Confidence 999987654 478999999743 223566788999999999999998
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-11 Score=108.27 Aligned_cols=97 Identities=22% Similarity=0.160 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHc---------------CCCCeEEEEEceeeeec
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEAN---------------GFSNVITVLKGKIEEIE 85 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~---------------~~~~~v~~~~~d~~~~~ 85 (306)
++.+|||+|||+|.+++.+++. ++.+|+++|++ ++++.++++++.| ++.+ ++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHH
Confidence 7889999999999999999985 77789999999 8999999999999 8854 999999997763
Q ss_pred C-CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~-~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ..++||+|+.++.+. ...+++.+.+.|++||.++
T Consensus 126 ~~~~~~fD~I~lDP~~~-------~~~~l~~a~~~lk~gG~l~ 161 (378)
T 2dul_A 126 AERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILG 161 (378)
T ss_dssp HHSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEE
T ss_pred HhccCCCCEEEeCCCCC-------HHHHHHHHHHhcCCCCEEE
Confidence 1 125799999887422 2457777788999999875
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-11 Score=108.12 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=70.3
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEec----h-HHHHHHHHHHHHcCCCCeEEEEEc-eeeeecCCCceee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC----S-QMANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~----s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~D 92 (306)
..+.++.+|||||||+|.++..+++. ++|+|+|. + ++++.+. .+..+. ++++++.+ |+.+++ .++||
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l~--~~~fD 150 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFIP--PERCD 150 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccCC--cCCCC
Confidence 44567899999999999999999998 48999998 4 4432111 111121 46999998 877653 47899
Q ss_pred EEEEcccccccCCcchHH---HHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLN---TVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~---~~l~~~~~~L~p~G~~i 127 (306)
+|+|++.........+.. .++..+.++|+|||.++
T Consensus 151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v 188 (305)
T 2p41_A 151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFC 188 (305)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 999986533111111111 46777789999999887
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-11 Score=104.23 Aligned_cols=94 Identities=17% Similarity=0.028 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH--cCC-CCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA--NGF-SNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
..+.+|||||||+|.++..+++.+ .+|+++|++ ++++.|++++.. +++ .++++++.+|..+.. ++||+|+++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 356899999999999999888876 899999999 899999876532 112 247999999988764 789999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. +...++..+.+.|+|||+++
T Consensus 147 ~~--------dp~~~~~~~~~~L~pgG~lv 168 (262)
T 2cmg_A 147 QE--------PDIHRIDGLKRMLKEDGVFI 168 (262)
T ss_dssp SC--------CCHHHHHHHHTTEEEEEEEE
T ss_pred CC--------ChHHHHHHHHHhcCCCcEEE
Confidence 32 11237888999999999997
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=101.06 Aligned_cols=85 Identities=28% Similarity=0.450 Sum_probs=70.7
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.+.....++.+|||||||+|.++..+++. +.+|+|+|++ .|++.+++++.. . ++++++++|+.+++++..
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCTTTSCGGGS
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECchhhCCcccC
Confidence 3444544556778999999999999999999998 4599999999 899999998873 2 479999999998877666
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
+||+|++++.
T Consensus 114 ~fD~Iv~NlP 123 (295)
T 3gru_A 114 DFNKVVANLP 123 (295)
T ss_dssp CCSEEEEECC
T ss_pred CccEEEEeCc
Confidence 8999999864
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=104.55 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=73.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCC------------
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPV------------ 88 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~------------ 88 (306)
+.+|||+|||+|.+++.+|+. +++|+|+|.+ ++++.|+++++.|++ ++++++.+|+.++. +..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhcccccccccccc
Confidence 678999999999999999984 6699999999 899999999999999 47999999997753 221
Q ss_pred --ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 --TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 --~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+||+|+.++.-.. ... .+.+.|+++|.++
T Consensus 292 ~~~~fD~Vv~dPPr~g-----~~~----~~~~~l~~~g~iv 323 (369)
T 3bt7_A 292 KSYQCETIFVDPPRSG-----LDS----ETEKMVQAYPRIL 323 (369)
T ss_dssp GGCCEEEEEECCCTTC-----CCH----HHHHHHTTSSEEE
T ss_pred ccCCCCEEEECcCccc-----cHH----HHHHHHhCCCEEE
Confidence 27999999875321 112 2334556888876
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-10 Score=96.67 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=67.8
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
...+.|.......++.+|||+|||+|.++..+++.+ .+|+|+|++ .+++.+++++... ++++++++|+.+++++.
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCccc
Confidence 345556555666788999999999999999999986 599999999 8999998877532 47999999999887653
Q ss_pred -ceeeEEEEccc
Q 021852 89 -TKVDIIISEWM 99 (306)
Q Consensus 89 -~~~D~iv~~~~ 99 (306)
..+ .|++++.
T Consensus 93 ~~~~-~vv~nlP 103 (244)
T 1qam_A 93 NQSY-KIFGNIP 103 (244)
T ss_dssp SCCC-EEEEECC
T ss_pred CCCe-EEEEeCC
Confidence 345 5777754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-10 Score=96.66 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=82.0
Q ss_pred HHHHHHHHHhccc-CCCCCEEEEEcCCC---cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee
Q 021852 8 TKSYQNVIYQNKF-LFKDKVVLDVGAGT---GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 81 (306)
Q Consensus 8 ~~~~~~ai~~~~~-~~~~~~VLDlG~G~---G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 81 (306)
|+.|.....+... .....+|||||||+ |.+...+.+ .+..+|+++|.| .|+..|++++...+ ..+++++++|+
T Consensus 62 nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~ 140 (277)
T 3giw_A 62 NRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCT
T ss_pred HHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecc
Confidence 3455544433222 22446999999996 344444443 455699999999 89999999886543 24799999999
Q ss_pred eeec--CC----Cceee-----EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 82 EEIE--LP----VTKVD-----IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 82 ~~~~--~~----~~~~D-----~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++. +. .+.+| .|+++.+.+++..+.....++..+.+.|+|||.++
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lv 197 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLA 197 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEE
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEE
Confidence 8752 11 12344 46677666777555446789999999999999997
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.6e-10 Score=98.19 Aligned_cols=106 Identities=11% Similarity=0.005 Sum_probs=80.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC---ceeeE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV---TKVDI 93 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~D~ 93 (306)
...++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++++++. +++++++|+.++.... .+||.
T Consensus 99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~fD~ 177 (309)
T 2b9e_A 99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHY 177 (309)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccccccCCCCE
Confidence 4578899999999999999999883 45699999999 8999999999999984 6999999998765321 47999
Q ss_pred EEEcccccccC--Cc------------chH-------HHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLL--FE------------NML-------NTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~--~~------------~~~-------~~~l~~~~~~L~p~G~~i 127 (306)
|++++..+... .. ..+ ..++..+.++|+ ||+++
T Consensus 178 Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lv 231 (309)
T 2b9e_A 178 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLV 231 (309)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEE
T ss_pred EEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEE
Confidence 99976432211 00 011 245666667786 89887
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.2e-11 Score=98.66 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=68.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
..++.+|||+|||+|.++..++ .+|+++|+++. +++++.+|+.+++++.++||+|++....
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l 125 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL 125 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC
T ss_pred cCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc
Confidence 4577899999999999987763 58999999832 2568889998877777899999996543
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ . .....++..+.++|+|||.++
T Consensus 126 ~---~-~~~~~~l~~~~~~L~~gG~l~ 148 (215)
T 2zfu_A 126 M---G-TNIRDFLEEANRVLKPGGLLK 148 (215)
T ss_dssp C---S-SCHHHHHHHHHHHEEEEEEEE
T ss_pred c---c-cCHHHHHHHHHHhCCCCeEEE
Confidence 2 2 567889999999999999987
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-10 Score=100.93 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC------CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGA------AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~------~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i 94 (306)
.++.+|||+|||+|.++..+++... .+++|+|++ .+++.|+.++..+++ ++.++++|..... +..+||+|
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-~~~~fD~I 205 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LVDPVDVV 205 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CCCCEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-ccCCccEE
Confidence 4568999999999999998887421 589999999 899999999988887 4789999976543 34789999
Q ss_pred EEcccccccCCc--------------chH-HHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFE--------------NML-NTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~--------------~~~-~~~l~~~~~~L~p~G~~i 127 (306)
+++++....... ... ..++..+.+.|+|||+++
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~ 253 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 253 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 999752222110 111 257788889999999876
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-10 Score=101.10 Aligned_cols=96 Identities=19% Similarity=0.246 Sum_probs=75.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||||||+|.++..+++. +..+++++|..++++.|++. ++++++.+|+.+ ++|.. |+|++..+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~--D~v~~~~v 270 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF-------SGVEHLGGDMFD-GVPKG--DAIFIKWI 270 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CCCCC--SEEEEESC
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhc-------CCCEEEecCCCC-CCCCC--CEEEEech
Confidence 556789999999999999999884 45589999997777666431 469999999986 55633 99999765
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.. .......+++++.+.|+|||+++
T Consensus 271 lh~~-~~~~~~~~l~~~~~~L~pgG~l~ 297 (368)
T 3reo_A 271 CHDW-SDEHCLKLLKNCYAALPDHGKVI 297 (368)
T ss_dssp GGGB-CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred hhcC-CHHHHHHHHHHHHHHcCCCCEEE
Confidence 4443 33445678999999999999987
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-10 Score=97.50 Aligned_cols=83 Identities=12% Similarity=0.222 Sum_probs=67.1
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--- 87 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--- 87 (306)
.+.|.......++.+|||||||+|.++..+++.+ .+|+|+|++ .|++.+++++.. .++++++++|+.+++++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~ 93 (255)
T 3tqs_A 18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVK 93 (255)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSC
T ss_pred HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhc
Confidence 3344444557788999999999999999999986 599999999 899999988764 24799999999887653
Q ss_pred -CceeeEEEEccc
Q 021852 88 -VTKVDIIISEWM 99 (306)
Q Consensus 88 -~~~~D~iv~~~~ 99 (306)
.+++| |++|+.
T Consensus 94 ~~~~~~-vv~NlP 105 (255)
T 3tqs_A 94 TDKPLR-VVGNLP 105 (255)
T ss_dssp CSSCEE-EEEECC
T ss_pred cCCCeE-EEecCC
Confidence 25688 888864
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-11 Score=105.90 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=65.0
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC-cee
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKV 91 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~ 91 (306)
.|.+.....++.+|||+|||+|.++..+++.+ .+|+|+|++ .+++.|++++. . .++++++++|+.+++++. ++|
T Consensus 20 ~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhcCcccCCCc
Confidence 33334456788899999999999999999986 699999999 89988877654 2 357999999999887653 688
Q ss_pred eEEEEccc
Q 021852 92 DIIISEWM 99 (306)
Q Consensus 92 D~iv~~~~ 99 (306)
.|++++.
T Consensus 96 -~vv~n~P 102 (245)
T 1yub_A 96 -KIVGNIP 102 (245)
T ss_dssp -EEEEECC
T ss_pred -EEEEeCC
Confidence 7888864
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-10 Score=103.10 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=75.7
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
+.+.+.....++.+|||+|||+|.++..+++. +..+++|+|++ .+++.| .+++++++|+.+.. +.+
T Consensus 29 ~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~-~~~ 97 (421)
T 2ih2_A 29 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE-PGE 97 (421)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC-CSS
T ss_pred HHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcC-ccC
Confidence 34443333345779999999999999999984 45699999998 777665 35899999998765 347
Q ss_pred eeeEEEEcccccccCC---------cc-----------------hHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLF---------EN-----------------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~---------~~-----------------~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++++.-..... +. ....++..+.++|+|||.++
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~ 161 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV 161 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEE
Confidence 8999999975322211 11 11256777889999999976
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6e-10 Score=96.51 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=66.6
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC-c
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV-T 89 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~ 89 (306)
.+.|.+.....++ +|||||||+|.++..+++.+ .+|+|+|++ +|++.+++++.. ++++++++|+.+++++. .
T Consensus 36 ~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~~~ 109 (271)
T 3fut_A 36 LRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEEVP 109 (271)
T ss_dssp HHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGGSC
T ss_pred HHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhhcc
Confidence 3344444456778 99999999999999999986 599999999 899999887652 47999999998887653 2
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
.+|.|++++.
T Consensus 110 ~~~~iv~NlP 119 (271)
T 3fut_A 110 QGSLLVANLP 119 (271)
T ss_dssp TTEEEEEEEC
T ss_pred CccEEEecCc
Confidence 6899999975
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=97.80 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=81.5
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....+..+|+|||||+|.++..+++ .+..+++..|..++++.|++++...+ .++|+++.+|+.+.+. ..+|+++..
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~--~~~D~~~~~ 251 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL--PEADLYILA 251 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---CCSEEEEESCTTTSCC--CCCSEEEEE
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-cCceeeecCccccCCC--CCceEEEee
Confidence 3456678999999999999999988 45558888898889999988876544 4789999999876543 458999987
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.|.. .......+++++.+.|+|||+++
T Consensus 252 ~vlh~~-~d~~~~~iL~~~~~al~pgg~ll 280 (353)
T 4a6d_A 252 RVLHDW-ADGKCSHLLERIYHTCKPGGGIL 280 (353)
T ss_dssp SSGGGS-CHHHHHHHHHHHHHHCCTTCEEE
T ss_pred eecccC-CHHHHHHHHHHHHhhCCCCCEEE
Confidence 654443 23345678999999999999987
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=8.2e-10 Score=100.01 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..+..+|||||||+|.++..+++ .+..+++++|..++++.|++. ++++++.+|+.+ ++|.. |+|++..+
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~--D~v~~~~v 268 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF-------PGVTHVGGDMFK-EVPSG--DTILMKWI 268 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CCCCC--SEEEEESC
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhc-------CCeEEEeCCcCC-CCCCC--CEEEehHH
Confidence 55678999999999999999988 455689999997777666431 479999999987 56633 99998765
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.. .......+++++.+.|+|||+++
T Consensus 269 lh~~-~d~~~~~~L~~~~~~L~pgG~l~ 295 (364)
T 3p9c_A 269 LHDW-SDQHCATLLKNCYDALPAHGKVV 295 (364)
T ss_dssp GGGS-CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred hccC-CHHHHHHHHHHHHHHcCCCCEEE
Confidence 4433 33456688999999999999987
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.9e-10 Score=96.89 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=72.5
Q ss_pred HHHHHHHHH-hcccCCCCCEEEEEcCCC------cHHHHHHHHcC-CCEEEEEechHHHHHHHHHHHHcCCCCeEEE-EE
Q 021852 8 TKSYQNVIY-QNKFLFKDKVVLDVGAGT------GILSLFCAKAG-AAHVYAVECSQMANMAKQIVEANGFSNVITV-LK 78 (306)
Q Consensus 8 ~~~~~~ai~-~~~~~~~~~~VLDlG~G~------G~l~~~~a~~g-~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~-~~ 78 (306)
+..+.+.+. ....+.++.+|||+|||+ |. ...+...+ ..+|+|+|+++. + .++++ ++
T Consensus 47 y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~------------v-~~v~~~i~ 112 (290)
T 2xyq_A 47 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF------------V-SDADSTLI 112 (290)
T ss_dssp HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC------------B-CSSSEEEE
T ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC------------C-CCCEEEEE
Confidence 334444442 334577899999999944 66 33333455 369999999943 1 24778 99
Q ss_pred ceeeeecCCCceeeEEEEccccccc--------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 79 GKIEEIELPVTKVDIIISEWMGYFL--------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 79 ~d~~~~~~~~~~~D~iv~~~~~~~~--------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+.+++++ ++||+|+|++..... .....+..++..+.++|||||.++
T Consensus 113 gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v 168 (290)
T 2xyq_A 113 GDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIA 168 (290)
T ss_dssp SCGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEE
T ss_pred CccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEE
Confidence 999887655 789999998532210 112345678899999999999997
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.00 E-value=6.9e-10 Score=103.18 Aligned_cols=107 Identities=17% Similarity=0.018 Sum_probs=80.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc--------------CCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeee
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA--------------GAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEE 83 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~--------------g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~ 83 (306)
...++.+|||.|||+|.+...+++. ...+++|+|++ .+++.|+.++..+++.. ++.++++|...
T Consensus 168 ~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~ 247 (445)
T 2okc_A 168 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE 247 (445)
T ss_dssp CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCC
Confidence 3456789999999999999888763 23479999999 89999999998888853 57889998876
Q ss_pred ecCCCceeeEEEEcccccccCCcc--------------hHHHHHHHHhhcccCCeEEE
Q 021852 84 IELPVTKVDIIISEWMGYFLLFEN--------------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~~~~~~~D~iv~~~~~~~~~~~~--------------~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.. .+||+|+++++........ ....++..+.++|+|||++.
T Consensus 248 ~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a 304 (445)
T 2okc_A 248 KEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 304 (445)
T ss_dssp SCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred Cccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEE
Confidence 5433 5899999997533211100 11357788889999999876
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=99.29 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=74.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||||||+|.++..+++.+ ..+++++|..++++.|++ . .+++++.+|+.+ +++ . +|+|++..+
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~~-~-~D~v~~~~~ 276 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP------L-SGIEHVGGDMFA-SVP-Q-GDAMILKAV 276 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------C-TTEEEEECCTTT-CCC-C-EEEEEEESS
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh------c-CCCEEEeCCccc-CCC-C-CCEEEEecc
Confidence 5567899999999999999998853 458999999767776653 2 359999999977 555 3 999999765
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.. .......+++++.+.|+|||+++
T Consensus 277 lh~~-~d~~~~~~l~~~~~~L~pgG~l~ 303 (372)
T 1fp1_D 277 CHNW-SDEKCIEFLSNCHKALSPNGKVI 303 (372)
T ss_dssp GGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccC-CHHHHHHHHHHHHHhcCCCCEEE
Confidence 4433 22233489999999999999987
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=105.59 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=88.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcC-------------------------------------------
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG------------------------------------------- 45 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g------------------------------------------- 45 (306)
+....++.......++..|||.+||+|.+++.+|..+
T Consensus 176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 4556666666667788999999999999999888642
Q ss_pred CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC--CceeeEEEEcccccc--cCCcchHHHHHHHHhhc-
Q 021852 46 AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYF--LLFENMLNTVLYARDKW- 119 (306)
Q Consensus 46 ~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~iv~~~~~~~--~~~~~~~~~~l~~~~~~- 119 (306)
..+|+|+|++ .+++.|++++..+|+.+.+++.++|+.++..+ .+++|+|++|+. |+ +.....+..+...+.+.
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPP-YG~Rlg~~~~l~~ly~~l~~~l 334 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPP-YGERLDSEPALIALHSLLGRIM 334 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCC-CCC---CCHHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCC-ccccccchhHHHHHHHHHHHHH
Confidence 1479999999 89999999999999988899999999887533 238999999975 32 22233555555554444
Q ss_pred --ccCCeEEE
Q 021852 120 --LVDDGIVL 127 (306)
Q Consensus 120 --L~p~G~~i 127 (306)
+.|||.+.
T Consensus 335 k~~~~g~~~~ 344 (703)
T 3v97_A 335 KNQFGGWNLS 344 (703)
T ss_dssp HHHCTTCEEE
T ss_pred HhhCCCCeEE
Confidence 45788764
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-08 Score=84.46 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC--CCeEEEEEceeeee--------------
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF--SNVITVLKGKIEEI-------------- 84 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~-------------- 84 (306)
.+.++|||+|| |..++.+|+...++|+++|.+ +.++.|+++++++++ .++|+++.+++.+.
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred hCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 45689999998 468888888535699999999 899999999999998 78999999996542
Q ss_pred -c--------C-CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 85 -E--------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 85 -~--------~-~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
+ . ..++||+|+.+.- .. ...+....++|+|||+++.+
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~-------k~-~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR-------FR-VGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS-------SH-HHHHHHHHHHCSSCEEEEET
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC-------Cc-hhHHHHHHHhcCCCeEEEEe
Confidence 1 1 1368999998631 11 23444455899999999733
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-09 Score=96.65 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=74.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||||||+|.++..+++. +..+++++|..++++.|++ . .+++++.+|+.+ ++| .||+|++..+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~p--~~D~v~~~~~ 255 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG------S-NNLTYVGGDMFT-SIP--NADAVLLKYI 255 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------B-TTEEEEECCTTT-CCC--CCSEEEEESC
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc------C-CCcEEEeccccC-CCC--CccEEEeehh
Confidence 456789999999999999999884 4558999999767776654 2 249999999866 455 3999999765
Q ss_pred ccccCCcchHHHHHHHHhhcccC---CeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVD---DGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p---~G~~i 127 (306)
.+.. .......+++++.+.|+| ||+++
T Consensus 256 lh~~-~d~~~~~~l~~~~~~L~p~~~gG~l~ 285 (352)
T 1fp2_A 256 LHNW-TDKDCLRILKKCKEAVTNDGKRGKVT 285 (352)
T ss_dssp GGGS-CHHHHHHHHHHHHHHHSGGGCCCEEE
T ss_pred hccC-CHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence 4443 222334889999999999 99987
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-09 Score=99.11 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc--CCCCeEEEEEceeeee-c-CCCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN--GFSNVITVLKGKIEEI-E-LPVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~-~-~~~~~~D~iv~ 96 (306)
.+|.+|||+|||+|..++.+++.+. +|+++|.+ .+++.|+++++.+ ++ ++++++++|+.+. . .+..+||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEE
Confidence 3489999999999999999998754 99999999 8999999999988 88 6899999999874 2 12358999999
Q ss_pred ccc
Q 021852 97 EWM 99 (306)
Q Consensus 97 ~~~ 99 (306)
++.
T Consensus 170 DPP 172 (410)
T 3ll7_A 170 DPA 172 (410)
T ss_dssp CCE
T ss_pred CCC
Confidence 875
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.91 E-value=6.4e-10 Score=89.93 Aligned_cols=88 Identities=15% Similarity=0.041 Sum_probs=69.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC---CCceeeEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDII 94 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~D~i 94 (306)
..+.+|.+|||+|||+ +++|.| +|++.|+++... +++++.+|++++++ ++++||+|
T Consensus 8 ~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp TTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred cCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeEE
Confidence 3467899999999996 138999 899999887532 37899999998876 67899999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
++....+++ ..+...++.++.++|||||.++.
T Consensus 68 ~~~~~l~~~--~~~~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 68 LSGLVPGST--TLHSAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp EECCSTTCC--CCCCHHHHHHHHHHEEEEEEEEE
T ss_pred EECChhhhc--ccCHHHHHHHHHHHCCCCEEEEE
Confidence 996543433 13457899999999999999983
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.8e-10 Score=96.60 Aligned_cols=80 Identities=26% Similarity=0.109 Sum_probs=64.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechH--------HHHHHHHHHHHcCCCCeEEEEEceeeeec--CCC-
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ--------MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV- 88 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~--------~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~- 88 (306)
...++.+|||+|||+|.+++.+|+.|. +|+++|.++ +++.|+++++.+++.++++++++|+.++. ++.
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345678999999999999999999865 899999763 56677777777777667999999998752 333
Q ss_pred -ceeeEEEEcccc
Q 021852 89 -TKVDIIISEWMG 100 (306)
Q Consensus 89 -~~~D~iv~~~~~ 100 (306)
++||+|+++++.
T Consensus 159 ~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 159 QGKPDIVYLDPMY 171 (258)
T ss_dssp HCCCSEEEECCCC
T ss_pred CCCccEEEECCCC
Confidence 589999999763
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-09 Score=94.02 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=65.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CC---Ccee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LP---VTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~---~~~~ 91 (306)
....++.+|||+|||+|..+..+++. +..+|+|+|.| .|++.|+++++.++ ++++++++|+.+++ ++ ..+|
T Consensus 22 L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~ 99 (301)
T 1m6y_A 22 LKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKV 99 (301)
T ss_dssp HCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred cCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCC
Confidence 34568899999999999999999985 35699999999 89999999998877 57999999998764 21 1579
Q ss_pred eEEEEcc
Q 021852 92 DIIISEW 98 (306)
Q Consensus 92 D~iv~~~ 98 (306)
|.|++++
T Consensus 100 D~Vl~D~ 106 (301)
T 1m6y_A 100 DGILMDL 106 (301)
T ss_dssp EEEEEEC
T ss_pred CEEEEcC
Confidence 9999875
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-09 Score=91.61 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=64.2
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCC---EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA---HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~---~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
.+.|.......++.+|||||||+|.++..+++.+.. +|+|+|++ .|++.++++. .++++++++|+.+++++
T Consensus 31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGG
T ss_pred HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChh
Confidence 344444455678899999999999999999986542 29999999 8999998873 25799999999988754
Q ss_pred Cc------eeeEEEEccc
Q 021852 88 VT------KVDIIISEWM 99 (306)
Q Consensus 88 ~~------~~D~iv~~~~ 99 (306)
.- ..+.||+|+.
T Consensus 106 ~~~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 106 SIARPGDEPSLRIIGNLP 123 (279)
T ss_dssp GGSCSSSSCCEEEEEECC
T ss_pred HhcccccCCceEEEEccC
Confidence 21 3457888864
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.5e-09 Score=90.66 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=65.7
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.+.....++.+|||+|||+|.++..+++.|+.+|+|+|++ .|++.++++ + ..+++++++|+.+++++..
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~~ 93 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCSL 93 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGGS
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhHc
Confidence 444555555667889999999999999999999877799999999 899999776 1 2479999999988775521
Q ss_pred -eeeEEEEccc
Q 021852 90 -KVDIIISEWM 99 (306)
Q Consensus 90 -~~D~iv~~~~ 99 (306)
....|++++.
T Consensus 94 ~~~~~vv~NlP 104 (249)
T 3ftd_A 94 GKELKVVGNLP 104 (249)
T ss_dssp CSSEEEEEECC
T ss_pred cCCcEEEEECc
Confidence 1237888864
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.8e-09 Score=92.92 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=74.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||||||+|.++..+++. +..+++++|.+.+++.|++ . .+++++.+|+.+ +++ +||+|++..+
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~~~~v 260 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVLLKWV 260 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEEEESC
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEEEccc
Confidence 346789999999999999999885 3458999999877766653 2 349999999977 555 4999999765
Q ss_pred ccccCCcchHHHHHHHHhhcccC---CeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVD---DGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p---~G~~i 127 (306)
.+.. .......+++++.+.|+| ||+++
T Consensus 261 lh~~-~d~~~~~~l~~~~~~L~p~~~gG~l~ 290 (358)
T 1zg3_A 261 LHDW-NDEQSLKILKNSKEAISHKGKDGKVI 290 (358)
T ss_dssp GGGS-CHHHHHHHHHHHHHHTGGGGGGCEEE
T ss_pred ccCC-CHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence 4443 222344899999999999 99887
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.78 E-value=6e-09 Score=89.46 Aligned_cols=84 Identities=15% Similarity=0.176 Sum_probs=64.0
Q ss_pred HHhcccCCCC--CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc-------C-CCCeEEEEEceeee
Q 021852 15 IYQNKFLFKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN-------G-FSNVITVLKGKIEE 83 (306)
Q Consensus 15 i~~~~~~~~~--~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~-------~-~~~~v~~~~~d~~~ 83 (306)
+.+...+.++ .+|||+|||+|..++.+|+.|+ +|+++|.+ .++..++++++.. + +.++++++++|+.+
T Consensus 78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~ 156 (258)
T 2oyr_A 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (258)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence 3333445567 8999999999999999999877 79999998 7777776665422 2 33479999999987
Q ss_pred ec--CCCceeeEEEEcccc
Q 021852 84 IE--LPVTKVDIIISEWMG 100 (306)
Q Consensus 84 ~~--~~~~~~D~iv~~~~~ 100 (306)
+. ++ ++||+|+.+++.
T Consensus 157 ~L~~~~-~~fDvV~lDP~y 174 (258)
T 2oyr_A 157 ALTDIT-PRPQVVYLDPMF 174 (258)
T ss_dssp HSTTCS-SCCSEEEECCCC
T ss_pred HHHhCc-ccCCEEEEcCCC
Confidence 52 23 479999999863
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4e-09 Score=90.45 Aligned_cols=81 Identities=10% Similarity=0.066 Sum_probs=61.5
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCE--EEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC-
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAH--VYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV- 88 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~--v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~- 88 (306)
+.|.+.....++.+|||||||+|.++. +++ + .+ |+|+|++ .|++.+++++... ++++++++|+.+++++.
T Consensus 11 ~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 11 DSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHH
T ss_pred HHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHh
Confidence 334433456788999999999999999 765 3 36 9999999 8999998876432 47999999998876431
Q ss_pred ----ceeeEEEEccc
Q 021852 89 ----TKVDIIISEWM 99 (306)
Q Consensus 89 ----~~~D~iv~~~~ 99 (306)
+..|.|++++.
T Consensus 85 ~~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 85 AEKMGQPLRVFGNLP 99 (252)
T ss_dssp HHHHTSCEEEEEECC
T ss_pred hcccCCceEEEECCC
Confidence 23579999864
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-08 Score=94.50 Aligned_cols=109 Identities=13% Similarity=-0.075 Sum_probs=79.6
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc----C---------------CCEEEEEech-HHHHHHHHHHHHcCCCC----eE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA----G---------------AAHVYAVECS-QMANMAKQIVEANGFSN----VI 74 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~----g---------------~~~v~~iD~s-~~~~~a~~~~~~~~~~~----~v 74 (306)
....++.+|||.+||+|.+.+.+++. + ...++|+|++ .++..|+.++..+++.+ ++
T Consensus 165 l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~ 244 (541)
T 2ar0_A 165 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 244 (541)
T ss_dssp HCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTB
T ss_pred hccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccC
Confidence 34456789999999999998888762 1 1379999999 89999999988888753 26
Q ss_pred EEEEceeeeec-CCCceeeEEEEcccccccCC-----------cchHHHHHHHHhhcccCCeEEE
Q 021852 75 TVLKGKIEEIE-LPVTKVDIIISEWMGYFLLF-----------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 75 ~~~~~d~~~~~-~~~~~~D~iv~~~~~~~~~~-----------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++++|..... .+..+||+|+++++...... ...-..++..+.++|+|||++.
T Consensus 245 ~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 309 (541)
T 2ar0_A 245 AIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 309 (541)
T ss_dssp SEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred CeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEE
Confidence 78888875433 23468999999975322111 0112357777889999999875
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.1e-08 Score=83.88 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=86.5
Q ss_pred HHHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH-c-C-C-CCeEEEEEcee
Q 021852 10 SYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEA-N-G-F-SNVITVLKGKI 81 (306)
Q Consensus 10 ~~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~-~-~-~-~~~v~~~~~d~ 81 (306)
.|.+.+... ..-...++||-||.|.|..+..+++. +..+|+.+|++ .+++.+++.+.. + + + .++++++.+|.
T Consensus 68 ~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg 147 (294)
T 3o4f_A 68 IYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDG 147 (294)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCT
T ss_pred HHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechH
Confidence 456655432 12345689999999999999999985 56799999999 899999988643 1 1 1 25899999999
Q ss_pred eeec-CCCceeeEEEEcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 82 EEIE-LPVTKVDIIISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 82 ~~~~-~~~~~~D~iv~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
..+. -..++||+|+.+..+.....+. .-..+++.+.+.|+|||+++
T Consensus 148 ~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v 195 (294)
T 3o4f_A 148 VNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFV 195 (294)
T ss_dssp TTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEE
T ss_pred HHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEE
Confidence 7754 2357899999986543222211 12367888899999999997
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-08 Score=85.72 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=68.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
..+.++.+|||||||+|.++..+++ .++..|+|+|++ .+....... ...++ ++..+..+++...++++++|+|+|
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~--~ii~~~~~~dv~~l~~~~~DlVls 146 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW--NIITFKDKTDIHRLEPVKCDTLLC 146 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG--GGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC--CeEEEeccceehhcCCCCccEEEe
Confidence 5567888999999999999999887 477789999987 541111000 00111 334455555444566789999999
Q ss_pred cccccccCCcchHH-----HHHHHHhhcccCC-eEEE
Q 021852 97 EWMGYFLLFENMLN-----TVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~-----~~l~~~~~~L~p~-G~~i 127 (306)
++..+ .+....+ .+++.+.++|+|| |.++
T Consensus 147 D~apn--sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV 181 (277)
T 3evf_A 147 DIGES--SSSSVTEGERTVRVLDTVEKWLACGVDNFC 181 (277)
T ss_dssp CCCCC--CSCHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred cCccC--cCchHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 97555 1222222 2457778999999 9987
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.55 E-value=7e-07 Score=77.40 Aligned_cols=122 Identities=10% Similarity=0.088 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc------CCCEEEEEech-H---------------------
Q 021852 5 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECS-Q--------------------- 56 (306)
Q Consensus 5 ~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~------g~~~v~~iD~s-~--------------------- 56 (306)
..|......++...........|||+|+..|..++.++.. ..++|+++|.. .
T Consensus 88 ~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~ 167 (282)
T 2wk1_A 88 IKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRN 167 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccccc
Confidence 3456666666665443455679999999999988877652 25689999942 1
Q ss_pred -----HHHHHHHHHHHcCCC-CeEEEEEceeeeec--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 57 -----MANMAKQIVEANGFS-NVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 57 -----~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
.++.+++++++.|+. ++|+++.+++.+.. ++.+++|+|..+. + .+ ......+..+..+|+|||+++.
T Consensus 168 ~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D---~y-~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 168 SVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-D---LY-ESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp HHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-C---SH-HHHHHHHHHHGGGEEEEEEEEE
T ss_pred ccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-C---cc-ccHHHHHHHHHhhcCCCEEEEE
Confidence 467789999999984 88999999997642 3346899999863 1 12 2334678888899999999986
Q ss_pred cCc
Q 021852 129 DKA 131 (306)
Q Consensus 129 ~~~ 131 (306)
+..
T Consensus 243 DD~ 245 (282)
T 2wk1_A 243 DDY 245 (282)
T ss_dssp SSC
T ss_pred cCC
Confidence 653
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.7e-07 Score=85.19 Aligned_cols=105 Identities=14% Similarity=0.081 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc----CCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeee--c-CCCceee
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEI--E-LPVTKVD 92 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~----g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--~-~~~~~~D 92 (306)
.++.+|||.+||||.+.+.+++. +...++|+|++ .++..|+.++..+|+. +++.+.++|.... + .+..+||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 46789999999999998888774 35589999999 8999999999888885 4688999987654 2 3357899
Q ss_pred EEEEcccccccCCc--------------c-------hHHHHHHHHhhccc-CCeEEE
Q 021852 93 IIISEWMGYFLLFE--------------N-------MLNTVLYARDKWLV-DDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~--------------~-------~~~~~l~~~~~~L~-p~G~~i 127 (306)
+|+++|+.. .... + .--.++..+.++|+ |||++.
T Consensus 300 ~IvaNPPf~-~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 300 GVLMNPPYS-AKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp EEEECCCTT-CCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred EEEecCCcC-CccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence 999997532 2110 0 00136777889999 999875
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-07 Score=82.15 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=59.2
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
.+.+|.+|||+||++|.++..+++.|+ +|+|||..+|...... . ++|+++.+|......+..++|+|+|++.
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~~----~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLMD----T---GQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHHT----T---TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhcc----C---CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 467899999999999999999999876 9999998765443321 1 4699999999888766678999999874
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=89.20 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=73.9
Q ss_pred EEEEEcCCCcHHHHHHHHc--------C--------CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CC
Q 021852 26 VVLDVGAGTGILSLFCAKA--------G--------AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LP 87 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~~--------g--------~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~ 87 (306)
+|||.+||||.+.+.+++. + ...++|+|++ .++..|+.++..+++..++.+.++|....+ .+
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~ 326 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHP 326 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCT
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccc
Confidence 9999999999988777541 0 3489999999 899999999999998765555777764433 34
Q ss_pred CceeeEEEEcccccccCC-------------------------cc-hHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLF-------------------------EN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~-------------------------~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
..+||+|+++|+...-.. .. .--.++..+.++|+|||++.
T Consensus 327 ~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 327 DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence 578999999975321100 00 01147777889999999875
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.8e-08 Score=84.17 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=67.0
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
..+.++.+|||||||+|.++..+++ .++..|+|+|++ .+...+... ...+ .++.....++....++..++|+|+|
T Consensus 86 ~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l~~~~~DvVLS 162 (282)
T 3gcz_A 86 GYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNMEVIPGDTLLC 162 (282)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGSCCCCCSEEEE
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhcCCCCcCEEEe
Confidence 3567888999999999999999885 678789999987 532222110 0011 1233333333333356689999999
Q ss_pred cccccccCCcchHH-----HHHHHHhhcccCC--eEEE
Q 021852 97 EWMGYFLLFENMLN-----TVLYARDKWLVDD--GIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~-----~~l~~~~~~L~p~--G~~i 127 (306)
++... .+....+ .+++-+.++|+|| |.++
T Consensus 163 DmApn--sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv 198 (282)
T 3gcz_A 163 DIGES--SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFC 198 (282)
T ss_dssp CCCCC--CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred cCccC--CCChHHHHHHHHHHHHHHHHHcCCCCCCcEE
Confidence 97655 2222222 2466667899999 9886
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-07 Score=82.17 Aligned_cols=112 Identities=18% Similarity=0.035 Sum_probs=84.3
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHcCCC-----CeEEEEEceeeeec-CCCce
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFS-----NVITVLKGKIEEIE-LPVTK 90 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~-~~~~~ 90 (306)
....+|.+|||+.+|.|.=+..+++.+. ..|+|+|++ .-+..+++++++.+.. .++.+...|...+. ...++
T Consensus 144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~ 223 (359)
T 4fzv_A 144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT 223 (359)
T ss_dssp HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence 4567899999999999999998888543 479999999 7888888998887653 46889998887764 33478
Q ss_pred eeEEEEccccccc----CCc----------c-------hHHHHHHHHhhcccCCeEEEecC
Q 021852 91 VDIIISEWMGYFL----LFE----------N-------MLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 91 ~D~iv~~~~~~~~----~~~----------~-------~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
||.|+.+...++. ... . .-..++....++|||||+++-+.
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT 284 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST 284 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 9999998764431 000 0 11256777789999999998333
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-07 Score=79.03 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=68.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEc-eeeeecCCCceeeEEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVDIIIS 96 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~D~iv~ 96 (306)
-.+.++.+|+||||++|.++..++. .|+++|+|+|+..+-..--...+..|| +.|+++.+ |+..++ ..++|+|+|
T Consensus 74 ~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gw-n~v~fk~gvDv~~~~--~~~~Dtllc 150 (267)
T 3p8z_A 74 NMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGW-NIVKLMSGKDVFYLP--PEKCDTLLC 150 (267)
T ss_dssp TSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTT-TSEEEECSCCGGGCC--CCCCSEEEE
T ss_pred cCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCc-CceEEEeccceeecC--CccccEEEE
Confidence 3677889999999999999997776 688899999976211000011234566 46999998 876553 378999999
Q ss_pred cccccccCCcchHH---HHHHHHhhcccCCeEE
Q 021852 97 EWMGYFLLFENMLN---TVLYARDKWLVDDGIV 126 (306)
Q Consensus 97 ~~~~~~~~~~~~~~---~~l~~~~~~L~p~G~~ 126 (306)
++-.+....+-+-. .+++-+.++|++ |-+
T Consensus 151 DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~f 182 (267)
T 3p8z_A 151 DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQF 182 (267)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEE
T ss_pred ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCE
Confidence 86443221111111 245556788988 444
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=5.7e-07 Score=80.64 Aligned_cols=119 Identities=19% Similarity=0.172 Sum_probs=85.4
Q ss_pred HHHHHHHHhccc-CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH---cCC----CCeEEEEEc
Q 021852 9 KSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA---NGF----SNVITVLKG 79 (306)
Q Consensus 9 ~~~~~ai~~~~~-~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~---~~~----~~~v~~~~~ 79 (306)
..|.+++..... ..+.++||-||.|.|..+..+.+.+..+|+.+|++ .+++.+++.+.. ..+ .++++++.+
T Consensus 190 ~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~ 269 (381)
T 3c6k_A 190 LAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE 269 (381)
T ss_dssp HHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES
T ss_pred HHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH
Confidence 468888764322 23568999999999999999999777899999999 899999887532 111 135899999
Q ss_pred eeeeec----CCCceeeEEEEcccccccCC------c-chHHHHHHHHhhcccCCeEEE
Q 021852 80 KIEEIE----LPVTKVDIIISEWMGYFLLF------E-NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 80 d~~~~~----~~~~~~D~iv~~~~~~~~~~------~-~~~~~~l~~~~~~L~p~G~~i 127 (306)
|...+. -..++||+|+.+........ . .--..+++.+.+.|+|||+++
T Consensus 270 Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv 328 (381)
T 3c6k_A 270 DCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYF 328 (381)
T ss_dssp CHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEE
Confidence 987643 12368999999854321111 1 112467788889999999997
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.38 E-value=7.7e-07 Score=86.59 Aligned_cols=105 Identities=13% Similarity=0.137 Sum_probs=70.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC----CCEEEEEech-HHHHHH--HHHHHHcCCC---CeEEEEEceeeeec-CCCce
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAG----AAHVYAVECS-QMANMA--KQIVEANGFS---NVITVLKGKIEEIE-LPVTK 90 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g----~~~v~~iD~s-~~~~~a--~~~~~~~~~~---~~v~~~~~d~~~~~-~~~~~ 90 (306)
.++.+|||.|||+|.+.+.+++.. ..+++|+|++ .++..| +.++..|++. +...+...++.... .+..+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 467899999999999999998742 2479999999 788888 5544443322 12345555555422 23468
Q ss_pred eeEEEEcccccccCCc---------------------------chHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFE---------------------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~---------------------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
||+||+||+ |..... .....++..+.++|+|||++.
T Consensus 400 FDVVIgNPP-Yg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLA 462 (878)
T 3s1s_A 400 VSVVVMNPP-YVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVIS 462 (878)
T ss_dssp EEEEEECCB-CCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEE
T ss_pred CCEEEECCC-ccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEE
Confidence 999999985 322110 012345667788999999976
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.3e-07 Score=76.13 Aligned_cols=106 Identities=20% Similarity=0.107 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-------CC------CEEEEEech----HHH-----------HHHHHHHHHc-----
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-------GA------AHVYAVECS----QMA-----------NMAKQIVEAN----- 68 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-------g~------~~v~~iD~s----~~~-----------~~a~~~~~~~----- 68 (306)
.++.+|||+|+|+|..++.+++. +. .+++++|.. +++ ..|++.++..
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35579999999999887776542 22 389999953 233 3555555431
Q ss_pred -----CCC---CeEEEEEceeeee-c-CCC---ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 69 -----GFS---NVITVLKGKIEEI-E-LPV---TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 69 -----~~~---~~v~~~~~d~~~~-~-~~~---~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+. .+++++.+|+.+. + ++. .+||+|+.+.+......+-.-+.++..+.++|+|||+++
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~ 210 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 210 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEE
Confidence 111 3688999998774 2 222 279999987542222222234678899999999999987
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=5.8e-07 Score=77.35 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=65.5
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 96 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~ 96 (306)
.-+.++.+||||||++|.++..+++ .|+..|+|+|+. .+...... ....++ +.+.+ .....-..++..++|+|+|
T Consensus 77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~-~~~~di~~l~~~~~DlVls 153 (300)
T 3eld_A 77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKF-KDKSNVFTMPTEPSDTLLC 153 (300)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEE-ECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEe-ecCceeeecCCCCcCEEee
Confidence 4566889999999999999999997 577789999986 42110000 000011 12323 2222222345689999999
Q ss_pred cccccccCCcchHH-----HHHHHHhhcccCC-eEEE
Q 021852 97 EWMGYFLLFENMLN-----TVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~-----~~l~~~~~~L~p~-G~~i 127 (306)
++..+ .+....+ .+++-+.++|+|| |.++
T Consensus 154 D~APn--sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV 188 (300)
T 3eld_A 154 DIGES--SSNPLVERDRTMKVLENFERWKHVNTENFC 188 (300)
T ss_dssp CCCCC--CSSHHHHHHHHHHHHHHHHHHCCTTCCEEE
T ss_pred cCcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 87655 2222222 3466667899999 9987
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.12 E-value=5.5e-06 Score=71.17 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=61.6
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCceee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~D 92 (306)
....++.+++|.+||.|..+..+++. ..+|+|+|.+ .+++.|++ ++. +++++++++..++. ...+++|
T Consensus 18 L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~vD 91 (285)
T 1wg8_A 18 LAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERVD 91 (285)
T ss_dssp HTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred hCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCcC
Confidence 44678899999999999999999998 4599999999 89999887 533 47999999998874 2235799
Q ss_pred EEEEcc
Q 021852 93 IIISEW 98 (306)
Q Consensus 93 ~iv~~~ 98 (306)
.|+.++
T Consensus 92 gIL~DL 97 (285)
T 1wg8_A 92 GILADL 97 (285)
T ss_dssp EEEEEC
T ss_pred EEEeCC
Confidence 999875
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.8e-06 Score=64.69 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=50.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCc-HHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G-~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
+.+.+.|.+. ..++.+|||||||+| ..+..+++ .|. .|+++|++ ..++ ++..|+.+..
T Consensus 23 e~LaeYI~~~--~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~ 83 (153)
T 2k4m_A 23 NDLAVYIIRC--SGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPR 83 (153)
T ss_dssp HHHHHHHHHH--SCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCC
T ss_pred HHHHHHHHhc--CCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCc
Confidence 3455566533 456689999999999 69999997 776 89999998 4333 7888887643
Q ss_pred CCC-ceeeEEEE
Q 021852 86 LPV-TKVDIIIS 96 (306)
Q Consensus 86 ~~~-~~~D~iv~ 96 (306)
+.. +.||+|.+
T Consensus 84 ~~~Y~~~DLIYs 95 (153)
T 2k4m_A 84 MEIYRGAALIYS 95 (153)
T ss_dssp HHHHTTEEEEEE
T ss_pred ccccCCcCEEEE
Confidence 221 37999966
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=69.04 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=66.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc-eeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~D~iv 95 (306)
..+.++.+||||||++|.++..++. .|+++|+|+|+. .--+. -..++..++ +-|.++.+ |+..++ ..++|+|+
T Consensus 90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w-~lV~~~~~~Dv~~l~--~~~~D~iv 165 (321)
T 3lkz_A 90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGW-NIVTMKSGVDVFYRP--SECCDTLL 165 (321)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTG-GGEEEECSCCTTSSC--CCCCSEEE
T ss_pred cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCC-cceEEEeccCHhhCC--CCCCCEEE
Confidence 5677888999999999999997776 688899999986 30000 000012233 34788877 776654 37799999
Q ss_pred EcccccccCCcchHH---HHHHHHhhcccCC-eEEE
Q 021852 96 SEWMGYFLLFENMLN---TVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~---~~l~~~~~~L~p~-G~~i 127 (306)
|++-......+-+-. .+|+-+.++|+++ |-++
T Consensus 166 cDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~ 201 (321)
T 3lkz_A 166 CDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFC 201 (321)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEE
Confidence 986422221111111 2455556889888 6554
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=70.74 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCcHHHHHHHH------------c----CCCEEEEEech-H-HHHHHHHHHHHc-----------CCCCeE
Q 021852 24 DKVVLDVGAGTGILSLFCAK------------A----GAAHVYAVECS-Q-MANMAKQIVEAN-----------GFSNVI 74 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~------------~----g~~~v~~iD~s-~-~~~~a~~~~~~~-----------~~~~~v 74 (306)
..+|+|+|||+|..++.+.. . +--+|+.-|.. + .-...+. +... +...+-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~-L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQL-LPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHH-SCCBCCCC--CCC---CCCBC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhh-hhhhhhhcchhhhccccCCCc
Confidence 57999999999999887722 1 12378888854 3 3222222 2110 000011
Q ss_pred EEEE---ceeeeecCCCceeeEEEEcccccccCCcc-----------------------------------hHHHHHHHH
Q 021852 75 TVLK---GKIEEIELPVTKVDIIISEWMGYFLLFEN-----------------------------------MLNTVLYAR 116 (306)
Q Consensus 75 ~~~~---~d~~~~~~~~~~~D~iv~~~~~~~~~~~~-----------------------------------~~~~~l~~~ 116 (306)
.++. +..-.-.+|.+++|+|+|+...|++...+ ++..+++.+
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 22222336789999999987767664221 566788899
Q ss_pred hhcccCCeEEE
Q 021852 117 DKWLVDDGIVL 127 (306)
Q Consensus 117 ~~~L~p~G~~i 127 (306)
.+.|+|||+++
T Consensus 212 a~eL~pGG~mv 222 (374)
T 3b5i_A 212 AAEVKRGGAMF 222 (374)
T ss_dssp HHHEEEEEEEE
T ss_pred HHHhCCCCEEE
Confidence 99999999998
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.7e-06 Score=71.61 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=62.8
Q ss_pred hcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-H--HHHHHHHHHHHcCCCCeEEEEEc-eeeeecCCCcee
Q 021852 17 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-Q--MANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKV 91 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~--~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~ 91 (306)
+..-+.++.+|+||||+.|.++..+++. +...|.|..+. . +....- ...|+ +-++++.+ |+.++ +..++
T Consensus 67 eK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~---~~~Gv-~~i~~~~G~Df~~~--~~~~~ 140 (269)
T 2px2_A 67 ERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM---QSYGW-NIVTMKSGVDVFYK--PSEIS 140 (269)
T ss_dssp HTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC---CSTTG-GGEEEECSCCGGGS--CCCCC
T ss_pred HcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc---cCCCc-eEEEeeccCCccCC--CCCCC
Confidence 3346778999999999999999999985 33333444433 2 100000 00122 23566667 88774 34689
Q ss_pred eEEEEcccccccCCcchHHH---HHHHHhhcccCCe-EEE
Q 021852 92 DIIISEWMGYFLLFENMLNT---VLYARDKWLVDDG-IVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~---~l~~~~~~L~p~G-~~i 127 (306)
|+|+|++........-+... +++-+.++|+||| .++
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 99999976542211111111 3455568999999 765
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.86 E-value=4.2e-05 Score=66.94 Aligned_cols=47 Identities=34% Similarity=0.369 Sum_probs=42.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcC
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANG 69 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~ 69 (306)
.++.+|||++||+|..++.+++.|. +++|+|++ .+++.|+++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHhc
Confidence 6789999999999999999999875 99999999 89999999987653
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.79 E-value=6.9e-05 Score=64.17 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=64.2
Q ss_pred cccCCCCCEEEEEcC------CCcHHHHHHHHcCC--CEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 18 NKFLFKDKVVLDVGA------GTGILSLFCAKAGA--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~------G~G~l~~~~a~~g~--~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
...+..+.+|||+|+ -.|. ..+.+.+. ..|+++|+.++.. ..+ .++.+|..+... ..
T Consensus 104 ~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s----------da~--~~IqGD~~~~~~-~~ 168 (344)
T 3r24_A 104 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS----------DAD--STLIGDCATVHT-AN 168 (344)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC----------SSS--EEEESCGGGEEE-SS
T ss_pred cEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc----------CCC--eEEEcccccccc-CC
Confidence 356778999999997 3454 34444433 3999999875421 112 458999877654 48
Q ss_pred eeeEEEEcccccccC--------CcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLL--------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~--------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|+|++...... .....+.+++-+.+.|+|||.++
T Consensus 169 k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFv 214 (344)
T 3r24_A 169 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIA 214 (344)
T ss_dssp CEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEE
Confidence 899999986433211 12246667777788999999987
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00011 Score=69.40 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=58.7
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc----C----------CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA----G----------AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~----g----------~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
....++.+|+|-.||||.+...+.+. . ...++|+|++ .+...|+-++--+|.. ...+..+|...
T Consensus 213 ~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dtL~ 291 (530)
T 3ufb_A 213 MDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENSLR 291 (530)
T ss_dssp HCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCTTC
T ss_pred hccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-ccccccccccc
Confidence 33456789999999999998877652 1 2369999998 8899999888877874 34566676543
Q ss_pred ec----CCCceeeEEEEccc
Q 021852 84 IE----LPVTKVDIIISEWM 99 (306)
Q Consensus 84 ~~----~~~~~~D~iv~~~~ 99 (306)
.+ .+..+||+|+++|+
T Consensus 292 ~~~~~~~~~~~fD~Il~NPP 311 (530)
T 3ufb_A 292 FPLREMGDKDRVDVILTNPP 311 (530)
T ss_dssp SCGGGCCGGGCBSEEEECCC
T ss_pred CchhhhcccccceEEEecCC
Confidence 32 12357999999985
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=65.62 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHc------------------CCCEEEEEech--HHH------HHHHHHH-HHcCCCCeEEE
Q 021852 24 DKVVLDVGAGTGILSLFCAKA------------------GAAHVYAVECS--QMA------NMAKQIV-EANGFSNVITV 76 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~------------------g~~~v~~iD~s--~~~------~~a~~~~-~~~~~~~~v~~ 76 (306)
..+|+|+||++|..++.+... +--+|+..|.. +.- ....+.+ +.++-..+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 478999999999988877543 11267888843 221 1111111 22231111234
Q ss_pred EEceeee---ecCCCceeeEEEEcccccccCCcc------------------------------------hHHHHHHHHh
Q 021852 77 LKGKIEE---IELPVTKVDIIISEWMGYFLLFEN------------------------------------MLNTVLYARD 117 (306)
Q Consensus 77 ~~~d~~~---~~~~~~~~D~iv~~~~~~~~~~~~------------------------------------~~~~~l~~~~ 117 (306)
+.+.... -.+|.+++|+|+|+...+++...+ ++..+|+.+.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 347889999999987666654321 2234477888
Q ss_pred hcccCCeEEE
Q 021852 118 KWLVDDGIVL 127 (306)
Q Consensus 118 ~~L~p~G~~i 127 (306)
+.|+|||+++
T Consensus 213 ~eL~pGG~mv 222 (384)
T 2efj_A 213 EELISRGRML 222 (384)
T ss_dssp HHEEEEEEEE
T ss_pred HHhccCCeEE
Confidence 9999999997
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.58 E-value=3.4e-05 Score=66.27 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=78.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-c-
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-E- 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~- 85 (306)
+.|.+.|.. ..+..+||+-+|||.+++.+.+ +..+++.+|.+ ..++..+++++. .+++++++.|.... .
T Consensus 81 ~~yf~~l~~----~n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~ 152 (283)
T 2oo3_A 81 LEYISVIKQ----INLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNA 152 (283)
T ss_dssp HHHHHHHHH----HSSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHH
T ss_pred HHHHHHHHH----hcCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHH
Confidence 456777764 2456799999999999999988 45899999998 788888877754 35799999997542 2
Q ss_pred --CCCceeeEEEEcccccccCCcchHHHHHHHHhh--cccCCeEEE
Q 021852 86 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDK--WLVDDGIVL 127 (306)
Q Consensus 86 --~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~--~L~p~G~~i 127 (306)
.+..++|+|+.++. |.. ......++..+.+ .+.|+|+++
T Consensus 153 l~~~~~~fdLVfiDPP-Ye~--k~~~~~vl~~L~~~~~r~~~Gi~v 195 (283)
T 2oo3_A 153 LLPPPEKRGLIFIDPS-YER--KEEYKEIPYAIKNAYSKFSTGLYC 195 (283)
T ss_dssp HCSCTTSCEEEEECCC-CCS--TTHHHHHHHHHHHHHHHCTTSEEE
T ss_pred hcCCCCCccEEEECCC-CCC--CcHHHHHHHHHHHhCccCCCeEEE
Confidence 23457999999985 321 2355556555443 567888876
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.57 E-value=9.4e-05 Score=66.16 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc------------C-----CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee---
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA------------G-----AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI--- 81 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~------------g-----~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~--- 81 (306)
+..+|+|+||++|..++.+... + --+|+..|.. +....+-+.+....-..+..++.+..
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3468999999999776655332 2 1278899965 55555544433211000123444433
Q ss_pred eeecCCCceeeEEEEcccccccCC------------------------------cchHHHHHHHHhhcccCCeEEE
Q 021852 82 EEIELPVTKVDIIISEWMGYFLLF------------------------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 82 ~~~~~~~~~~D~iv~~~~~~~~~~------------------------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.-.+|.+++|+|+|+...+++.. ..++..+|+.+.+-|+|||+++
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mv 206 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV 206 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 334478899999999866565532 1245677999999999999998
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0003 Score=60.20 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF 70 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~ 70 (306)
..+|..|||..||+|..+..+.+.|. +++|+|++ ..++.|+++++.+++
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence 46889999999999999999999865 99999999 899999999887654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00043 Score=61.79 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
++..|||||.|.|.++..+++. .+++|+++|++ .++...++.. . .++++++++|+.++.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDWS 118 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccchh
Confidence 4689999999999999999984 46799999999 8888887765 2 257999999996653
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0018 Score=57.45 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcC---------------
Q 021852 6 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--------------- 69 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~--------------- 69 (306)
.|+..+.+.+.+.....+...|+.||||.......+... +..+++-+|..++++.-++.+...+
T Consensus 80 ~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~ 159 (334)
T 1rjd_A 80 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 159 (334)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccc
Confidence 466777777665433346689999999999888888763 3346777777667776666666542
Q ss_pred -----CCCeEEEEEceeeeec--------C-CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 -----FSNVITVLKGKIEEIE--------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 -----~~~~v~~~~~d~~~~~--------~-~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++..++.+|+.+.. . ......++++|.+..++ .+.....++..+.... |+|.++
T Consensus 160 ~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-~~~~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 160 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-HNNESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHHHHHC-SSEEEE
T ss_pred cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC-CHHHHHHHHHHHHhhC-CCcEEE
Confidence 1357899999987642 1 22567899999876666 5567778888877766 677664
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00054 Score=60.23 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=59.6
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CC---C-
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LP---V- 88 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~---~- 88 (306)
.....+|.+++|..+|.|..+..+++. | ..+|+|+|.+ .+++.|+ ++ ..+++++++++..++. ++ -
T Consensus 52 ~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g~~ 126 (347)
T 3tka_A 52 GLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERDLI 126 (347)
T ss_dssp HTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTTCT
T ss_pred hhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcCCC
Confidence 355678999999999999999999884 3 5699999999 7888874 33 2368999999988764 11 1
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|.|+.++
T Consensus 127 ~~vDgILfDL 136 (347)
T 3tka_A 127 GKIDGILLDL 136 (347)
T ss_dssp TCEEEEEEEC
T ss_pred CcccEEEECC
Confidence 3699999875
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0018 Score=58.48 Aligned_cols=69 Identities=25% Similarity=0.159 Sum_probs=54.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---C-----CCceeeEEE
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---L-----PVTKVDIII 95 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~-----~~~~~D~iv 95 (306)
.+|+|+.||.|.+++.+.++|...|.++|++ ..++..+.+. ....++.+|+.++. + ....+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 4799999999999999999999889999998 6666655543 23567888988763 1 236799999
Q ss_pred Eccc
Q 021852 96 SEWM 99 (306)
Q Consensus 96 ~~~~ 99 (306)
..+.
T Consensus 77 ggpP 80 (376)
T 3g7u_A 77 GGPP 80 (376)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 9765
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0055 Score=54.99 Aligned_cols=95 Identities=23% Similarity=0.258 Sum_probs=61.5
Q ss_pred hcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----c-CCC
Q 021852 17 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----E-LPV 88 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~-~~~ 88 (306)
+...+.++.+||.+|+|. |.++..+|+ .|+++|+++|.+ +.++.+++ .|. + .++..+-.++ . ...
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-~--~vi~~~~~~~~~~~~~~~~ 256 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGA-T--HVINSKTQDPVAAIKEITD 256 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTC-S--EEEETTTSCHHHHHHHHTT
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC-C--EEecCCccCHHHHHHHhcC
Confidence 345678899999999886 777777777 688789999987 66666654 343 2 1222211111 1 122
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+|+|+-.. + . +..+....+.|+++|+++
T Consensus 257 gg~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv 286 (371)
T 1f8f_A 257 GGVNFALEST-G----S----PEILKQGVDALGILGKIA 286 (371)
T ss_dssp SCEEEEEECS-C----C----HHHHHHHHHTEEEEEEEE
T ss_pred CCCcEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 3799998532 1 1 234555668999999987
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0044 Score=56.50 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=50.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHH-H-cC-CCEEEEEech-HHHHHHHHHHHH--cCCC-CeEEEEEceeee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCA-K-AG-AAHVYAVECS-QMANMAKQIVEA--NGFS-NVITVLKGKIEE 83 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a-~-~g-~~~v~~iD~s-~~~~~a~~~~~~--~~~~-~~v~~~~~d~~~ 83 (306)
+.++.+|+|+|++.|..++.++ + .+ .++|+++|.+ ...+.++++++. |+.. +++++++.-+.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 3688999999999999999887 4 33 3699999998 889999999988 4433 679888866543
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00069 Score=60.40 Aligned_cols=69 Identities=20% Similarity=0.161 Sum_probs=53.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEcc
Q 021852 25 KVVLDVGAGTGILSLFCAKAG--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEW 98 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~~ 98 (306)
.+|+|+.||.|.+++.+.++| +..|.++|.+ ..++..+.+.. ...++.+|+.++. ++...+|+|+..+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 589999999999999999988 5689999998 77777766642 2347788888764 1212699999986
Q ss_pred c
Q 021852 99 M 99 (306)
Q Consensus 99 ~ 99 (306)
.
T Consensus 77 P 77 (343)
T 1g55_A 77 P 77 (343)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.011 Score=53.74 Aligned_cols=96 Identities=19% Similarity=0.112 Sum_probs=59.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCce
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTK 90 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~ 90 (306)
.+.+|.+||-+|+|. |.++..+|+ .|+++|+++|.+ +-++.+++. |.. .++..+-.++. .....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence 578899999999875 677777777 688899999987 666666543 432 22322111111 12347
Q ss_pred eeEEEEcccccccCCc-chHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~-~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+-.. ... .....++..+.+.++++|+++
T Consensus 283 ~D~vid~~-----g~~~~~~~~~~~~l~~~~~~~G~iv 315 (404)
T 3ip1_A 283 AKLFLEAT-----GVPQLVWPQIEEVIWRARGINATVA 315 (404)
T ss_dssp CSEEEECS-----SCHHHHHHHHHHHHHHCSCCCCEEE
T ss_pred CCEEEECC-----CCcHHHHHHHHHHHHhccCCCcEEE
Confidence 99998532 121 133444444445569999987
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0041 Score=54.92 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC-CceeeEEEEccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 99 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~ 99 (306)
.+.+|+|+.||.|.+++.+.++|+..|.++|++ ..++..+.+... . . ++|+.++... -..+|+|+..+.
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~--~---~---~~Di~~~~~~~~~~~D~l~~gpP 80 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--K---P---EGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--C---C---BSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC--C---C---cCCHHHcCHhhCCCCCEEEECCC
Confidence 457999999999999999999999899999999 677777766521 1 1 5777765411 135999999754
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.049 Score=47.61 Aligned_cols=119 Identities=8% Similarity=0.061 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCC--CCeEEEEEceeee
Q 021852 6 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 83 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~--~~~v~~~~~d~~~ 83 (306)
.|+..+.+++.+... .....|++||||-=..+..+......+|+=+|...++...++.+...+. +.+..++.+|+.+
T Consensus 86 ~Rt~~~d~~v~~~~~-~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d 164 (310)
T 2uyo_A 86 VRTNFFDTYFNNAVI-DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 164 (310)
T ss_dssp HHHHHHHHHHHHHHH-TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHH-hCCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence 355556666654432 2235799999997555444432113588888866888888888876542 3678899999876
Q ss_pred ec---------CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~---------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. +.....=++++|.+.+++. +.....+++.+...+.||+.++
T Consensus 165 -~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~-~~~~~~ll~~l~~~~~~gs~l~ 215 (310)
T 2uyo_A 165 -DWPPALRSAGFDPSARTAWLAEGLLMYLP-ATAQDGLFTEIGGLSAVGSRIA 215 (310)
T ss_dssp -CHHHHHHHTTCCTTSCEEEEECSCGGGSC-HHHHHHHHHHHHHTCCTTCEEE
T ss_pred -hHHHHHHhccCCCCCCEEEEEechHhhCC-HHHHHHHHHHHHHhCCCCeEEE
Confidence 2 1224556888887766664 4467789998888888999887
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=53.67 Aligned_cols=100 Identities=19% Similarity=0.129 Sum_probs=61.4
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-----c--CCC
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-----E--LPV 88 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~--~~~ 88 (306)
..+.+|.+||.+|+|. |.++..+|+ .|+++|+++|.+ +.++.+++ .|. +++...-.++ . .+.
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~~~~~~~g 252 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF----ETIDLRNSAPLRDQIDQILGK 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC----cEEcCCCcchHHHHHHHHhCC
Confidence 5678899999999986 788888887 687799999987 66666543 343 2332211111 0 122
Q ss_pred ceeeEEEEcccccccCC------cchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+-.. +..... .......+....+.|+++|+++
T Consensus 253 ~g~Dvvid~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv 296 (398)
T 2dph_A 253 PEVDCGVDAV-GFEAHGLGDEANTETPNGALNSLFDVVRAGGAIG 296 (398)
T ss_dssp SCEEEEEECS-CTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEE
T ss_pred CCCCEEEECC-CCccccccccccccccHHHHHHHHHHHhcCCEEE
Confidence 3699998542 110000 0001234555668999999987
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0046 Score=55.52 Aligned_cols=93 Identities=20% Similarity=0.279 Sum_probs=60.3
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----c----CC
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----E----LP 87 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~----~~ 87 (306)
..+.+|.+||-.|+|. |.++..+|+ .|+++|+++|.+ +-.+.+++ .|.. .++...-.++ . +.
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT---ATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---EEECTTSSCHHHHHHSTTSSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---EEECCCCcCHHHHHHhhhhcc
Confidence 5678899999999876 777777777 688899999988 66666654 3542 1222111111 0 12
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+|+|+-.. + . ...+....++|+++|+++
T Consensus 251 ~gg~Dvvid~~-G----~----~~~~~~~~~~l~~~G~vv 281 (370)
T 4ej6_A 251 PGGVDVVIECA-G----V----AETVKQSTRLAKAGGTVV 281 (370)
T ss_dssp TTCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEE
T ss_pred CCCCCEEEECC-C----C----HHHHHHHHHHhccCCEEE
Confidence 24799998532 1 1 234555668899999987
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0099 Score=52.87 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=60.6
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCC
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 88 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~ 88 (306)
...+.+|.+||-+|+|. |.++..+|+ .|+++|+++|.+ +-++.+++ .|.. .++..+-.++. ...
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g 233 (352)
T 3fpc_A 161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT---DIINYKNGDIVEQILKATDG 233 (352)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC---EEECGGGSCHHHHHHHHTTT
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEEcCCCcCHHHHHHHHcCC
Confidence 35678899999999876 777777787 677789999987 66666654 3442 23322111111 123
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+-.. ... ..+....+.|+++|+++
T Consensus 234 ~g~D~v~d~~-----g~~----~~~~~~~~~l~~~G~~v 263 (352)
T 3fpc_A 234 KGVDKVVIAG-----GDV----HTFAQAVKMIKPGSDIG 263 (352)
T ss_dssp CCEEEEEECS-----SCT----THHHHHHHHEEEEEEEE
T ss_pred CCCCEEEECC-----CCh----HHHHHHHHHHhcCCEEE
Confidence 4799998532 111 23445567899999987
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.011 Score=53.16 Aligned_cols=97 Identities=23% Similarity=0.224 Sum_probs=61.5
Q ss_pred HHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce--eeeec----
Q 021852 15 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK--IEEIE---- 85 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~---- 85 (306)
+.+...+.+|.+||-+|+|. |.++..+|+ .|+++|+++|.+ +-++.++ +.|.. .++... -.++.
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGVN---EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTCC---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCc---EEEccccCchhHHHHHH
Confidence 33445678899999999975 777777777 688899999977 6666654 34542 223221 11110
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
+..+.+|+|+-.. + . +..+....+.|+++ |+++
T Consensus 258 ~~~~gg~D~vid~~-g----~----~~~~~~~~~~l~~g~G~iv 292 (378)
T 3uko_A 258 DLTDGGVDYSFECI-G----N----VSVMRAALECCHKGWGTSV 292 (378)
T ss_dssp HHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEE
T ss_pred HhcCCCCCEEEECC-C----C----HHHHHHHHHHhhccCCEEE
Confidence 1224799998532 1 1 23455566899996 9887
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.011 Score=52.64 Aligned_cols=95 Identities=23% Similarity=0.221 Sum_probs=61.0
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce--eeeec------CC
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK--IEEIE------LP 87 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~------~~ 87 (306)
..+.+|.+||-+|+|. |.++..+|+ .|+++|+++|.+ +-++.+++. . . ..+.....+ ..++. ..
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~-~---~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C-P---EVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C-T---TCEEEECCSCCHHHHHHHHHHHTS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c-h---hcccccccccchHHHHHHHHHHhC
Confidence 5578899999999876 777777777 688779999988 777777654 1 1 123222110 11111 12
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+|+|+-.. .. +..+....++|+++|+++
T Consensus 250 g~g~Dvvid~~-----g~----~~~~~~~~~~l~~~G~iv 280 (363)
T 3m6i_A 250 GIEPAVALECT-----GV----ESSIAAAIWAVKFGGKVF 280 (363)
T ss_dssp SCCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEE
T ss_pred CCCCCEEEECC-----CC----hHHHHHHHHHhcCCCEEE
Confidence 35799998532 11 224455568999999987
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.022 Score=50.62 Aligned_cols=92 Identities=29% Similarity=0.260 Sum_probs=59.4
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce---eeee----c--C
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK---IEEI----E--L 86 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~----~--~ 86 (306)
..+.+|.+||.+|+|. |.++..+|+ .|+++|+++|.+ +-.+.+++ .|.. .++..+ ..++ . .
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHHh
Confidence 4578899999999876 777777777 677799999987 66666543 4542 222221 1111 0 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ ..+|+|+-.. .. +..+....++|+++|+++
T Consensus 240 ~-~g~D~vid~~-----g~----~~~~~~~~~~l~~~G~iv 270 (356)
T 1pl8_A 240 G-CKPEVTIECT-----GA----EASIQAGIYATRSGGTLV 270 (356)
T ss_dssp T-SCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEE
T ss_pred C-CCCCEEEECC-----CC----hHHHHHHHHHhcCCCEEE
Confidence 2 5699998532 11 223445568899999987
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.023 Score=49.53 Aligned_cols=88 Identities=22% Similarity=0.171 Sum_probs=57.5
Q ss_pred hcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 17 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+...+.+|.+||-.|+|. |.++..+|+ .|+ +|++++ + +-.+.+++ .|. -.+++ |.+.+ ...+|+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~----lGa---~~v~~-d~~~v---~~g~Dv 202 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAK----RGV---RHLYR-EPSQV---TQKYFA 202 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHH----HTE---EEEES-SGGGC---CSCEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHH----cCC---CEEEc-CHHHh---CCCccE
Confidence 446678999999999965 777777777 677 999999 7 66666654 343 12333 32222 478999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+-.. + . . .+ ....+.|+++|+++
T Consensus 203 v~d~~-g----~-~---~~-~~~~~~l~~~G~~v 226 (315)
T 3goh_A 203 IFDAV-N----S-Q---NA-AALVPSLKANGHII 226 (315)
T ss_dssp EECC-----------------TTGGGEEEEEEEE
T ss_pred EEECC-C----c-h---hH-HHHHHHhcCCCEEE
Confidence 88421 1 1 1 11 34568999999987
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.056 Score=48.30 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=60.2
Q ss_pred hcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee--eeec-----C
Q 021852 17 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~-----~ 86 (306)
+...+.+|.+||-+|+|. |.++..+|+ .|+++|+++|.+ +-++.+++ .|.. .++...- .++. .
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---ECINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEeccccccccHHHHHHHH
Confidence 345678899999999875 677777777 677799999987 66666654 3442 1222110 1110 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
..+.+|+|+-.. + . ...+....++|+++ |+++
T Consensus 257 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv 289 (373)
T 2fzw_A 257 TDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVSV 289 (373)
T ss_dssp TTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEE
T ss_pred hCCCCCEEEECC-C----c----HHHHHHHHHhhccCCcEEE
Confidence 124799998532 1 1 23455566899999 9987
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.02 Score=51.06 Aligned_cols=95 Identities=22% Similarity=0.157 Sum_probs=59.9
Q ss_pred HHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------
Q 021852 15 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------ 85 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 85 (306)
+.+...+.+|.+||-+|+|. |.++..+|+ .|+ +|++++.+ +-++.+++ .|.. .++..+..++.
T Consensus 181 l~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~ 252 (363)
T 3uog_A 181 LVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA----LGAD---HGINRLEEDWVERVYAL 252 (363)
T ss_dssp HTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH----cCCC---EEEcCCcccHHHHHHHH
Confidence 33446678999999999876 777777777 577 99999987 66666654 3542 22222211111
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+|+|+-.. + .. .+....+.|+++|+++
T Consensus 253 ~~g~g~D~vid~~-g-----~~----~~~~~~~~l~~~G~iv 284 (363)
T 3uog_A 253 TGDRGADHILEIA-G-----GA----GLGQSLKAVAPDGRIS 284 (363)
T ss_dssp HTTCCEEEEEEET-T-----SS----CHHHHHHHEEEEEEEE
T ss_pred hCCCCceEEEECC-C-----hH----HHHHHHHHhhcCCEEE
Confidence 1234799998642 1 12 2334457899999987
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.049 Score=48.73 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=60.4
Q ss_pred hcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee--eeec-----C
Q 021852 17 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~-----~ 86 (306)
+...+.+|.+||-+|+|. |.++..+|+ .|+++|+++|.+ +-++.+++ .|.. .++..+- .++. .
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~ 257 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEK 257 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHH
Confidence 345678899999999875 677777777 688799999987 66666643 4542 2222110 1111 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
..+.+|+|+-.. + . ...+....++|+++ |+++
T Consensus 258 t~gg~Dvvid~~-g----~----~~~~~~~~~~l~~~~G~iv 290 (373)
T 1p0f_A 258 TNGGVDYAVECA-G----R----IETMMNALQSTYCGSGVTV 290 (373)
T ss_dssp TTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEE
T ss_pred hCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCCEEE
Confidence 124799998532 1 1 23455566899999 9987
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.025 Score=50.58 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=57.3
Q ss_pred CCCEEEEEc-CCC-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc--eee-ee-cCCCceeeEE
Q 021852 23 KDKVVLDVG-AGT-GILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG--KIE-EI-ELPVTKVDII 94 (306)
Q Consensus 23 ~~~~VLDlG-~G~-G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~~-~~-~~~~~~~D~i 94 (306)
+|.+||-.| +|. |.++..+|+. +..+|++++.+ +-++.+++ .|. + .++.. +.. .+ ....+.+|+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGa-d--~vi~~~~~~~~~v~~~~~~g~Dvv 243 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGA-H--HVIDHSKPLAAEVAALGLGAPAFV 243 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTC-S--EEECTTSCHHHHHHTTCSCCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCC-C--EEEeCCCCHHHHHHHhcCCCceEE
Confidence 788999999 554 8888888885 66699999987 66666643 454 2 12221 110 01 1233579998
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+-.. + -+..+....++|+++|+++
T Consensus 244 id~~------g---~~~~~~~~~~~l~~~G~iv 267 (363)
T 4dvj_A 244 FSTT------H---TDKHAAEIADLIAPQGRFC 267 (363)
T ss_dssp EECS------C---HHHHHHHHHHHSCTTCEEE
T ss_pred EECC------C---chhhHHHHHHHhcCCCEEE
Confidence 8531 1 1234556668999999987
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.054 Score=48.45 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=60.0
Q ss_pred hcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee--eeec-----C
Q 021852 17 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~-----~ 86 (306)
+...+.+|.+||-+|+|. |.++..+|+ .|+++|+++|.+ +-++.+++ .|.. .++...- .++. .
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 258 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKM 258 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHH
Confidence 345678899999999875 677777777 677799999987 66666643 3542 2222110 1111 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
..+.+|+|+-.. + . ...+....++|+++ |+++
T Consensus 259 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv 291 (374)
T 1cdo_A 259 TNGGVDFSLECV-G----N----VGVMRNALESCLKGWGVSV 291 (374)
T ss_dssp HTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEE
T ss_pred hCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCcEEE
Confidence 124799998532 1 1 23455566899999 9987
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.077 Score=46.08 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHH----cC-CC--EEEEEech----------HHHHHHHHHHHHcC-C-CC--eEEEEEcee
Q 021852 23 KDKVVLDVGAGTGILSLFCAK----AG-AA--HVYAVECS----------QMANMAKQIVEANG-F-SN--VITVLKGKI 81 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~----~g-~~--~v~~iD~s----------~~~~~a~~~~~~~~-~-~~--~v~~~~~d~ 81 (306)
+.-+|||+|=|+|+..+.+.+ .+ .. +++++|.. ...+..+....... + .+ ..++..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 345899999999986544332 22 22 46677741 11222222222211 0 12 346777887
Q ss_pred eeec--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 82 EEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 82 ~~~~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.. ++..++|+++.+.+...-..+-.-+.++..+.++++|||++.
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 6532 344589999998765544344445689999999999999986
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.014 Score=51.63 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=59.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce--eee-ec--CCCcee
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK--IEE-IE--LPVTKV 91 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d--~~~-~~--~~~~~~ 91 (306)
.+.++.+||-+|+|. |.++..+|+ .|..+|+++|.+ +-.+.+++ .|... ++..+ ..+ +. .....+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADA---AVKSGAGAADAIRELTGGQGA 240 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSE---EEECSTTHHHHHHHHHGGGCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE---EEcCCCcHHHHHHHHhCCCCC
Confidence 678899999999976 777777777 567799999988 66666644 45421 22211 100 00 122479
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+-.. .. +..+....+.|+++|+++
T Consensus 241 d~v~d~~-----G~----~~~~~~~~~~l~~~G~iv 267 (345)
T 3jv7_A 241 TAVFDFV-----GA----QSTIDTAQQVVAVDGHIS 267 (345)
T ss_dssp EEEEESS-----CC----HHHHHHHHHHEEEEEEEE
T ss_pred eEEEECC-----CC----HHHHHHHHHHHhcCCEEE
Confidence 9998532 11 224555668999999987
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.051 Score=48.64 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=59.8
Q ss_pred hcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee--eeec-----C
Q 021852 17 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~-----~ 86 (306)
+...+.+|.+||-+|+|. |.++..+|+ .|+++|+++|.+ +-++.+++ .|.. .++...- .++. .
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~~~ 261 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVITEL 261 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHHHH
Confidence 345678899999999875 677777777 677799999987 66666543 4542 1222110 1110 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
..+.+|+|+-.. + . ...+....+.|+++ |+++
T Consensus 262 ~~~g~Dvvid~~-G----~----~~~~~~~~~~l~~~~G~iv 294 (376)
T 1e3i_A 262 TAGGVDYSLDCA-G----T----AQTLKAAVDCTVLGWGSCT 294 (376)
T ss_dssp HTSCBSEEEESS-C----C----HHHHHHHHHTBCTTTCEEE
T ss_pred hCCCccEEEECC-C----C----HHHHHHHHHHhhcCCCEEE
Confidence 123799998532 1 1 23455566899999 9987
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.017 Score=50.98 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCC--CEE-EEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEE
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGA--AHV-YAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIIS 96 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~--~~v-~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~ 96 (306)
..+|+|+.||.|.+++.+.++|. ..| .++|++ ..++..+.+.. +. ++.+|+.++. ++...+|+++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-----~~--~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-----EE--VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-----CC--CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-----CC--cccCChhhcCHHHhccCCCCEEEe
Confidence 45899999999999999999884 678 899999 66666666542 11 5667877664 22236999998
Q ss_pred ccc
Q 021852 97 EWM 99 (306)
Q Consensus 97 ~~~ 99 (306)
.+.
T Consensus 83 gpP 85 (327)
T 3qv2_A 83 SPP 85 (327)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.49 E-value=0.068 Score=47.76 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=59.6
Q ss_pred hcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee--eeec-----C
Q 021852 17 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~-----~ 86 (306)
+...+.++.+||-+|+|. |.++..+|+ .|+++|+++|.+ +-++.+++ .|.. .++..+- .++. .
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 257 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEM 257 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHH
Confidence 345678899999999875 677777777 677799999977 66666643 3542 2222110 1110 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
..+.+|+|+-.. + . ...+....++|+++ |+++
T Consensus 258 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv 290 (374)
T 2jhf_A 258 SNGGVDFSFEVI-G----R----LDTMVTALSCCQEAYGVSV 290 (374)
T ss_dssp TTSCBSEEEECS-C----C----HHHHHHHHHHBCTTTCEEE
T ss_pred hCCCCcEEEECC-C----C----HHHHHHHHHHhhcCCcEEE
Confidence 124799998532 1 1 22445556889999 9987
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.037 Score=49.03 Aligned_cols=88 Identities=22% Similarity=0.127 Sum_probs=58.6
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
..+.+|.+||-+|+|. |.++..+|+ .|+ +|++++.+ +-.+.+++ .|. +. ++ .+...+ . ..+|+|+
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa-~~--v~-~~~~~~--~-~~~D~vi 239 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGV-KH--FY-TDPKQC--K-EELDFII 239 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTC-SE--EE-SSGGGC--C-SCEEEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCC-Ce--ec-CCHHHH--h-cCCCEEE
Confidence 3678899999999876 777777777 677 89999987 66666643 454 22 22 333322 2 3799998
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.. ..... +....+.|+++|+++
T Consensus 240 d~~-----g~~~~----~~~~~~~l~~~G~iv 262 (348)
T 3two_A 240 STI-----PTHYD----LKDYLKLLTYNGDLA 262 (348)
T ss_dssp ECC-----CSCCC----HHHHHTTEEEEEEEE
T ss_pred ECC-----CcHHH----HHHHHHHHhcCCEEE
Confidence 532 12212 334558999999987
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.027 Score=49.55 Aligned_cols=68 Identities=26% Similarity=0.222 Sum_probs=51.9
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC-CceeeEEEEccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 99 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~ 99 (306)
.+|+|+-||.|.+++-+.++|...|.++|++ ..++..+.+. + -+++.+|+.++... -..+|+++..+.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~ggpP 70 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGPP 70 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEecCC
Confidence 3799999999999999999999889999998 5665555542 2 25788899887521 246999998653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.026 Score=45.52 Aligned_cols=93 Identities=19% Similarity=0.193 Sum_probs=54.7
Q ss_pred hcccCCCCCEEEEEcCCC--cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----c--C
Q 021852 17 QNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----E--L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~--G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~ 86 (306)
+...+.++++||..|++. |.....+++ .|+ +|++++.+ +..+.+++ .+. + . ++...-.+. . .
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~-~-~-~~d~~~~~~~~~~~~~~ 103 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGV-E-Y-VGDSRSVDFADEILELT 103 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCC-S-E-EEETTCSTHHHHHHHHT
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCC-C-E-EeeCCcHHHHHHHHHHh
Confidence 335678899999999533 444444444 676 89999987 65555432 343 2 1 121111111 0 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+|+++... + . ..+....+.|+++|+++
T Consensus 104 ~~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~~v 134 (198)
T 1pqw_A 104 DGYGVDVVLNSL-A-----G----EAIQRGVQILAPGGRFI 134 (198)
T ss_dssp TTCCEEEEEECC-C-----T----HHHHHHHHTEEEEEEEE
T ss_pred CCCCCeEEEECC-c-----h----HHHHHHHHHhccCCEEE
Confidence 224699999643 1 1 23455668999999987
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.067 Score=46.84 Aligned_cols=93 Identities=22% Similarity=0.206 Sum_probs=57.8
Q ss_pred hcccCCCCCEEEEEc-CC-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------C
Q 021852 17 QNKFLFKDKVVLDVG-AG-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG-~G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~ 86 (306)
+...+.+|++||-.| +| .|..+..+++ .|+ +|++++.+ +-++.+++ .|. + .++...-.++. .
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga-~--~~~~~~~~~~~~~~~~~~ 205 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA----LGA-W--ETIDYSHEDVAKRVLELT 205 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTC-S--EEEETTTSCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC-C--EEEeCCCccHHHHHHHHh
Confidence 345678899999998 34 3677776666 677 89999987 66666654 343 2 12222111111 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+|+|+-.. + . . .+....+.|+++|+++
T Consensus 206 ~~~g~Dvvid~~-g----~-~----~~~~~~~~l~~~G~iv 236 (325)
T 3jyn_A 206 DGKKCPVVYDGV-G----Q-D----TWLTSLDSVAPRGLVV 236 (325)
T ss_dssp TTCCEEEEEESS-C----G-G----GHHHHHTTEEEEEEEE
T ss_pred CCCCceEEEECC-C----h-H----HHHHHHHHhcCCCEEE
Confidence 235799998642 1 1 1 3344568999999987
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.071 Score=47.16 Aligned_cols=93 Identities=28% Similarity=0.259 Sum_probs=57.9
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCC
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 88 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~ 88 (306)
...+ +|.+||-+|+|. |.++..+|+ .|+++|++++.+ +-++.+++ .|. + .++..+-.++. ...
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga-~--~~~~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGA-D--YVINPFEEDVVKEVMDITDG 234 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTC-S--EEECTTTSCHHHHHHHHTTT
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC-C--EEECCCCcCHHHHHHHHcCC
Confidence 3456 899999999964 666666676 677689999987 66666653 343 2 12221111110 123
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+-.. + . ...+....+.|+++|+++
T Consensus 235 ~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv 264 (348)
T 2d8a_A 235 NGVDVFLEFS-G----A----PKALEQGLQAVTPAGRVS 264 (348)
T ss_dssp SCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEE
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 4799998642 1 1 234455568889999987
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.041 Score=47.74 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCE--EEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CC-CceeeEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAH--VYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LP-VTKVDII 94 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~--v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~~D~i 94 (306)
..+.+|+|+-||.|.+++.+.++|... |.++|++ ..++..+.+. + ...++.+|+.++. ++ ...+|++
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~-~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----Q-GKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----T-TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----C-CCceeCCChHHccHHHhcccCCcCEE
Confidence 455699999999999999999999876 7999998 5555444432 1 2357788988764 11 1369999
Q ss_pred EEcc
Q 021852 95 ISEW 98 (306)
Q Consensus 95 v~~~ 98 (306)
+..+
T Consensus 88 ~ggp 91 (295)
T 2qrv_A 88 IGGS 91 (295)
T ss_dssp EECC
T ss_pred EecC
Confidence 9965
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.014 Score=51.70 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=50.3
Q ss_pred CEEEEEcCCCcHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEcc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEW 98 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~~ 98 (306)
.+++|+-||.|.+++.+.++|. ..|.++|++ ..++..+.+.. ...++.+|+.++. ++...+|+++..+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMSP 77 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEecC
Confidence 4799999999999999988886 678999998 55555554431 2346778887764 2223699999865
Q ss_pred c
Q 021852 99 M 99 (306)
Q Consensus 99 ~ 99 (306)
.
T Consensus 78 P 78 (333)
T 4h0n_A 78 P 78 (333)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.049 Score=48.03 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=59.4
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C--CCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~--~~~~~ 91 (306)
..+.+|.+||-.|+|. |.++..+|+ .|+ +|+++|.+ +-.+.+++ .|.. .++...-.++. + ..+.+
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~g~~ 233 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEIGGA 233 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhCCCC
Confidence 4678899999999986 888888888 677 99999987 66666544 4542 12221111110 0 01368
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+-... . ...+....+.|+++|+++
T Consensus 234 d~vid~~g-----~----~~~~~~~~~~l~~~G~iv 260 (340)
T 3s2e_A 234 HGVLVTAV-----S----PKAFSQAIGMVRRGGTIA 260 (340)
T ss_dssp EEEEESSC-----C----HHHHHHHHHHEEEEEEEE
T ss_pred CEEEEeCC-----C----HHHHHHHHHHhccCCEEE
Confidence 99885321 1 234555668999999987
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.042 Score=49.38 Aligned_cols=93 Identities=26% Similarity=0.330 Sum_probs=58.3
Q ss_pred cc-CCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce---eee----ec--
Q 021852 19 KF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK---IEE----IE-- 85 (306)
Q Consensus 19 ~~-~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~----~~-- 85 (306)
.. +.+|.+||-+|+|. |.++..+|+ .|+.+|++++.+ +-++.++ +.|. + .++..+ -.+ +.
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lGa-~--~vi~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGA-D--LTLNRRETSVEERRKAIMDI 262 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTC-S--EEEETTTSCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH----HcCC-c--EEEeccccCcchHHHHHHHH
Confidence 45 77899999999765 677777777 675699999987 6666654 3454 2 223221 111 11
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+...+|+|+-.. + ... .+....+.|+++|+++
T Consensus 263 ~~g~g~Dvvid~~-g----~~~----~~~~~~~~l~~~G~iv 295 (380)
T 1vj0_A 263 THGRGADFILEAT-G----DSR----ALLEGSELLRRGGFYS 295 (380)
T ss_dssp TTTSCEEEEEECS-S----CTT----HHHHHHHHEEEEEEEE
T ss_pred hCCCCCcEEEECC-C----CHH----HHHHHHHHHhcCCEEE
Confidence 1234799998532 1 111 3344557889999987
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.084 Score=46.52 Aligned_cols=93 Identities=16% Similarity=0.034 Sum_probs=58.0
Q ss_pred hcccCCCCCEEEEEcCCC--cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------C
Q 021852 17 QNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G~--G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~ 86 (306)
+...+.+|.+||-.|+|+ |.++..+++ .|+ +|++++.+ +-++.+++ .|.. .++...-.++. .
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lga~---~~~~~~~~~~~~~~~~~~ 209 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR----LGAA---YVIDTSTAPLYETVMELT 209 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEEETTTSCHHHHHHHHT
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----CCCc---EEEeCCcccHHHHHHHHh
Confidence 345678999999999984 666666666 677 99999987 66666654 2432 12221111111 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+|+++-.. +... ... ..+.|+++|+++
T Consensus 210 ~~~g~Dvvid~~------g~~~---~~~-~~~~l~~~G~iv 240 (340)
T 3gms_A 210 NGIGADAAIDSI------GGPD---GNE-LAFSLRPNGHFL 240 (340)
T ss_dssp TTSCEEEEEESS------CHHH---HHH-HHHTEEEEEEEE
T ss_pred CCCCCcEEEECC------CChh---HHH-HHHHhcCCCEEE
Confidence 235799998642 1111 222 237899999987
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.07 Score=46.87 Aligned_cols=93 Identities=24% Similarity=0.255 Sum_probs=57.1
Q ss_pred hcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------C
Q 021852 17 QNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~ 86 (306)
+...+.+|++||-.|+ | .|.++..+++ .|+ +|++++.+ +-++.+++ .|. + .++..+-.++. .
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga-~--~~~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGA-E--YLINASKEDILRQVLKFT 213 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC-S--EEEETTTSCHHHHHHHHT
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC-c--EEEeCCCchHHHHHHHHh
Confidence 3346788999999994 3 3666666666 576 89999987 66665543 343 2 12221111111 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+|+++-.. + . . .+....+.|+++|+++
T Consensus 214 ~~~g~D~vid~~-g----~-~----~~~~~~~~l~~~G~iv 244 (334)
T 3qwb_A 214 NGKGVDASFDSV-G----K-D----TFEISLAALKRKGVFV 244 (334)
T ss_dssp TTSCEEEEEECC-G----G-G----GHHHHHHHEEEEEEEE
T ss_pred CCCCceEEEECC-C----h-H----HHHHHHHHhccCCEEE
Confidence 235799998643 1 1 1 3444557899999987
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.087 Score=46.48 Aligned_cols=94 Identities=27% Similarity=0.275 Sum_probs=59.4
Q ss_pred HHhcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----
Q 021852 15 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----- 85 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 85 (306)
+.+...+.+|.+||-.|+ | .|.++..+++ .|+ +|++++.+ +-.+.+++ .|. + .++..+ .++.
T Consensus 151 l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga-~--~v~~~~-~~~~~~v~~ 221 (342)
T 4eye_A 151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS----VGA-D--IVLPLE-EGWAKAVRE 221 (342)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTC-S--EEEESS-TTHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCC-c--EEecCc-hhHHHHHHH
Confidence 334456788999999997 3 3677777777 677 99999987 66666654 243 2 222222 2211
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+|+++-.. + . . .+....+.|+++|+++
T Consensus 222 ~~~~~g~Dvvid~~-g----~-~----~~~~~~~~l~~~G~iv 254 (342)
T 4eye_A 222 ATGGAGVDMVVDPI-G----G-P----AFDDAVRTLASEGRLL 254 (342)
T ss_dssp HTTTSCEEEEEESC-C-----------CHHHHHHTEEEEEEEE
T ss_pred HhCCCCceEEEECC-c----h-h----HHHHHHHhhcCCCEEE
Confidence 2234799998642 1 1 1 2445568999999987
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.046 Score=48.40 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCEEEEEc-CCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce--eee-e-cCCCceeeEE
Q 021852 23 KDKVVLDVG-AGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK--IEE-I-ELPVTKVDII 94 (306)
Q Consensus 23 ~~~~VLDlG-~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d--~~~-~-~~~~~~~D~i 94 (306)
+|.+||-.| +|. |.++..+++ .|+ +|++++.+ +-++.+++ .|. + .++..+ ..+ + ......+|+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa-~--~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK----MGA-D--IVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH----HTC-S--EEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCC-c--EEEECCccHHHHHHHhCCCCccEE
Confidence 899999994 554 677777777 677 99999987 66666654 343 2 122211 100 0 0123579999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+-.. + -+..+....++|+++|+++
T Consensus 222 ~d~~------g---~~~~~~~~~~~l~~~G~iv 245 (346)
T 3fbg_A 222 FCTF------N---TDMYYDDMIQLVKPRGHIA 245 (346)
T ss_dssp EESS------C---HHHHHHHHHHHEEEEEEEE
T ss_pred EECC------C---chHHHHHHHHHhccCCEEE
Confidence 8532 1 1234555668899999986
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.038 Score=49.00 Aligned_cols=92 Identities=23% Similarity=0.221 Sum_probs=57.5
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce----e-eeec--CC-
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK----I-EEIE--LP- 87 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~-~~~~--~~- 87 (306)
..+.+|.+||-+|+|. |.++..+|+ .|+ +|+++|.+ +-++.+++ .|.. .++..+ . ..+. .+
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERIRS 235 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHhcc
Confidence 4578899999999875 677777777 677 59999987 66666543 4542 222211 1 1111 11
Q ss_pred --CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 --~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+|+|+-.. + . ...+....+.|+++|+++
T Consensus 236 ~~g~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv 268 (352)
T 1e3j_A 236 AIGDLPNVTIDCS-G----N----EKCITIGINITRTGGTLM 268 (352)
T ss_dssp HSSSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEE
T ss_pred ccCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 25699998532 1 1 223455568899999987
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.048 Score=48.10 Aligned_cols=96 Identities=21% Similarity=0.237 Sum_probs=58.1
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D 92 (306)
....++.+||-.|+|. |.++..+|+ .|+..++++|.+ +-++.+++ .|....+.....+..+.. .....+|
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 5577899999999976 566666666 788889999987 66666544 454221111111111110 1224578
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+-.. + . +..++...++|+++|.++
T Consensus 232 ~v~d~~-G----~----~~~~~~~~~~l~~~G~~v 257 (346)
T 4a2c_A 232 LILETA-G----V----PQTVELAVEIAGPHAQLA 257 (346)
T ss_dssp EEEECS-C----S----HHHHHHHHHHCCTTCEEE
T ss_pred cccccc-c----c----cchhhhhhheecCCeEEE
Confidence 877421 1 1 234455568899999987
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.069 Score=46.86 Aligned_cols=94 Identities=20% Similarity=0.126 Sum_probs=56.1
Q ss_pred hcccCCCCCEEEEEcCC--CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC
Q 021852 17 QNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 87 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G--~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 87 (306)
+...+.++++||..|++ .|..+..+++ .|+ +|++++.+ +.++.+++ .+. + ..+-..+..++. ..
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~-~-~~~d~~~~~~~~~~~~~~~ 211 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGF-D-AAFNYKTVNSLEEALKKAS 211 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC-S-EEEETTSCSCHHHHHHHHC
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCC-c-EEEecCCHHHHHHHHHHHh
Confidence 34567889999999983 3555555555 677 99999987 66665532 343 1 112111101110 11
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+|+++... + . ..+....+.|+++|+++
T Consensus 212 ~~~~d~vi~~~-g-------~--~~~~~~~~~l~~~G~~v 241 (333)
T 1v3u_A 212 PDGYDCYFDNV-G-------G--EFLNTVLSQMKDFGKIA 241 (333)
T ss_dssp TTCEEEEEESS-C-------H--HHHHHHHTTEEEEEEEE
T ss_pred CCCCeEEEECC-C-------h--HHHHHHHHHHhcCCEEE
Confidence 24799998753 1 1 13455668999999987
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.098 Score=45.93 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=59.1
Q ss_pred HHHhcccCCCCCEEEEEcCC--CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----
Q 021852 14 VIYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---- 85 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G--~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 85 (306)
++.+...+.++++||-.|++ .|..+..+++ .|+ +|++++.+ +-++.+. +..|.. .++...-.++.
T Consensus 140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~---~~~g~~---~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV---EELGFD---GAIDYKNEDLAAGLK 212 (336)
T ss_dssp HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH---HTTCCS---EEEETTTSCHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH---HHcCCC---EEEECCCHHHHHHHH
Confidence 33344567899999999983 3666666666 677 99999987 5555542 223432 12221111110
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+.+|+++-.. + . ..+....+.|+++|+++
T Consensus 213 ~~~~~~~d~vi~~~------g--~--~~~~~~~~~l~~~G~iv 245 (336)
T 4b7c_A 213 RECPKGIDVFFDNV------G--G--EILDTVLTRIAFKARIV 245 (336)
T ss_dssp HHCTTCEEEEEESS------C--H--HHHHHHHTTEEEEEEEE
T ss_pred HhcCCCceEEEECC------C--c--chHHHHHHHHhhCCEEE
Confidence 1135799998642 1 1 24556668999999987
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.44 Score=40.23 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHc--------CCCEEEEEec-hHH------------------------HHHHHHHHH----
Q 021852 24 DKVVLDVGAGTGILSLFCAKA--------GAAHVYAVEC-SQM------------------------ANMAKQIVE---- 66 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~--------g~~~v~~iD~-s~~------------------------~~~a~~~~~---- 66 (306)
...|+|+|+-.|..++.+++. ..++|++.|. ..+ .+..++.++
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 348999999999887776542 2468999992 111 111222221
Q ss_pred --HcCC-CCeEEEEEceeeeec------CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 67 --ANGF-SNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 67 --~~~~-~~~v~~~~~d~~~~~------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
..+. .++|+++.+++.+.. .+..++|++..+. + .+ ......++.+..+|+|||+++.+.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D---~Y-~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-D---LY-EPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-C---CH-HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-c---cc-chHHHHHHHHHHHhCCCcEEEEcC
Confidence 2343 378999999987642 2445799999874 1 12 233456777889999999998554
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.044 Score=48.17 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=47.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
..+|..|||--||+|..+..+.+.|. +.+++|++ ..++.++++++..+. ....+..++.++
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~--~~~~~~~~~~~i 311 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNI--SEEKITDIYNRI 311 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCS--CHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhccc--chHHHHHHHHHH
Confidence 46789999999999999999999864 99999999 789999888765554 233444444444
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.047 Score=48.55 Aligned_cols=94 Identities=14% Similarity=0.288 Sum_probs=57.1
Q ss_pred ccCCCC------CEEEEEcCCC-cHHH-HHHH-H-cCCCEEEEEech-H---HHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 19 KFLFKD------KVVLDVGAGT-GILS-LFCA-K-AGAAHVYAVECS-Q---MANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 19 ~~~~~~------~~VLDlG~G~-G~l~-~~~a-~-~g~~~v~~iD~s-~---~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
..+.+| .+||-+|+|. |.++ ..+| + .|+++|++++.+ + -.+.+++ .|. +.+.....++.++
T Consensus 162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa-~~v~~~~~~~~~i 236 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA-TYVDSRQTPVEDV 236 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC-EEEETTTSCGGGH
T ss_pred cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC-cccCCCccCHHHH
Confidence 345678 9999999865 7777 7777 6 677679999987 6 6666643 343 1120000111111
Q ss_pred c-CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 E-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~-~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .. +.+|+|+-.. + . +..+....+.|+++|+++
T Consensus 237 ~~~~-gg~Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv 270 (357)
T 2b5w_A 237 PDVY-EQMDFIYEAT-G----F----PKHAIQSVQALAPNGVGA 270 (357)
T ss_dssp HHHS-CCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEE
T ss_pred HHhC-CCCCEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 0 12 3799998532 1 1 123455568899999987
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.043 Score=48.52 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=56.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-c--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc----e-eeeecCCCc
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-A--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG----K-IEEIELPVT 89 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~----d-~~~~~~~~~ 89 (306)
.+ +|.+||-+|+|. |.++..+|+ . |+ +|++++.+ +-.+.+++ .|. + .++.. + ...+. ...
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~----lGa-~--~vi~~~~~~~~~~~~~-~g~ 237 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE----LGA-D--YVSEMKDAESLINKLT-DGL 237 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH----HTC-S--EEECHHHHHHHHHHHH-TTC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH----hCC-C--EEeccccchHHHHHhh-cCC
Confidence 56 899999999975 677777777 5 76 79999987 66666654 343 2 12221 1 11111 224
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+|+-.. + . +..+....+.|+++|+++
T Consensus 238 g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv 266 (344)
T 2h6e_A 238 GASIAIDLV-G----T----EETTYNLGKLLAQEGAII 266 (344)
T ss_dssp CEEEEEESS-C----C----HHHHHHHHHHEEEEEEEE
T ss_pred CccEEEECC-C----C----hHHHHHHHHHhhcCCEEE
Confidence 799998642 1 1 224455568899999987
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.14 Score=45.19 Aligned_cols=97 Identities=22% Similarity=0.082 Sum_probs=57.0
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-ec--CCCceee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~--~~~~~~D 92 (306)
....+|.+||-+|+|. |.++..+++ .++.+|+++|.+ +-++.++ ..|...-+.....+..+ +. .....+|
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~----~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d 234 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK----KIGADVTINSGDVNPVDEIKKITGGLGVQ 234 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH----HTTCSEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh----hcCCeEEEeCCCCCHHHHhhhhcCCCCce
Confidence 4568899999999987 445555554 677799999988 5555544 34542212221112111 10 1234677
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
.++-... . ...+....+.|+++|.++.
T Consensus 235 ~~~~~~~-----~----~~~~~~~~~~l~~~G~~v~ 261 (348)
T 4eez_A 235 SAIVCAV-----A----RIAFEQAVASLKPMGKMVA 261 (348)
T ss_dssp EEEECCS-----C----HHHHHHHHHTEEEEEEEEE
T ss_pred EEEEecc-----C----cchhheeheeecCCceEEE
Confidence 7775321 1 2344555689999999873
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.0092 Score=52.88 Aligned_cols=92 Identities=16% Similarity=0.236 Sum_probs=56.1
Q ss_pred cccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCc
Q 021852 18 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 89 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~ 89 (306)
...+ +|.+||-+|+|. |.++..+|+ .|+++|++++.+ +-++.+++. .+. ++..+-.++. ....
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l------a~~--v~~~~~~~~~~~~~~~~~~ 230 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY------ADR--LVNPLEEDLLEVVRRVTGS 230 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT------CSE--EECTTTSCHHHHHHHHHSS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh------HHh--ccCcCccCHHHHHHHhcCC
Confidence 3456 899999999864 666777777 677689999987 555555432 121 2221111110 0135
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+|+-.. + . ...+....+.|+++|+++
T Consensus 231 g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv 259 (343)
T 2dq4_A 231 GVEVLLEFS-G----N----EAAIHQGLMALIPGGEAR 259 (343)
T ss_dssp CEEEEEECS-C----C----HHHHHHHHHHEEEEEEEE
T ss_pred CCCEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 799998532 1 1 223455568899999987
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.13 Score=45.24 Aligned_cols=91 Identities=20% Similarity=0.106 Sum_probs=56.8
Q ss_pred ccCCCCCEEEEEcC--CCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----c--CCC
Q 021852 19 KFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----E--LPV 88 (306)
Q Consensus 19 ~~~~~~~~VLDlG~--G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~ 88 (306)
..+.++.+||..|+ |.|..+..+++ .|+ +|++++.+ +.++.+++ .+. +. ++...-.++ . ...
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~ga-~~--~~d~~~~~~~~~~~~~~~~ 233 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA----LGA-DE--TVNYTHPDWPKEVRRLTGG 233 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTC-SE--EEETTSTTHHHHHHHHTTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCC-CE--EEcCCcccHHHHHHHHhCC
Confidence 46778999999998 45777777776 676 89999987 66666643 243 21 222111111 0 123
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+++... + .. .+....+.|+++|+++
T Consensus 234 ~~~d~vi~~~-g-----~~----~~~~~~~~l~~~G~~v 262 (343)
T 2eih_A 234 KGADKVVDHT-G-----AL----YFEGVIKATANGGRIA 262 (343)
T ss_dssp TCEEEEEESS-C-----SS----SHHHHHHHEEEEEEEE
T ss_pred CCceEEEECC-C-----HH----HHHHHHHhhccCCEEE
Confidence 4799999753 1 12 2344557889999987
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.24 Score=43.13 Aligned_cols=93 Identities=23% Similarity=0.185 Sum_probs=57.4
Q ss_pred hcccCCCCCEEEEEc-CCC-cHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeee-ecCCCceee
Q 021852 17 QNKFLFKDKVVLDVG-AGT-GILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVD 92 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG-~G~-G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~D 92 (306)
+...+.+|.+||-.| +|. |.++..+|+ .|+ +|++++.++-.+.++ +.|.. .++..+-.+ +.-....+|
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~~----~lGa~---~~i~~~~~~~~~~~~~g~D 217 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFLK----ALGAE---QCINYHEEDFLLAISTPVD 217 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHHH----HHTCS---EEEETTTSCHHHHCCSCEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHHH----HcCCC---EEEeCCCcchhhhhccCCC
Confidence 346678999999997 554 788888887 677 899988554345444 34552 233222111 111114699
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+-.. + . +.+ ....++|+++|+++
T Consensus 218 ~v~d~~------g--~-~~~-~~~~~~l~~~G~iv 242 (321)
T 3tqh_A 218 AVIDLV------G--G-DVG-IQSIDCLKETGCIV 242 (321)
T ss_dssp EEEESS------C--H-HHH-HHHGGGEEEEEEEE
T ss_pred EEEECC------C--c-HHH-HHHHHhccCCCEEE
Confidence 988532 1 1 222 55678999999987
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.1 Score=46.43 Aligned_cols=91 Identities=24% Similarity=0.228 Sum_probs=57.5
Q ss_pred ccCCCCCEEEEEcC--CCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCc
Q 021852 19 KFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 89 (306)
Q Consensus 19 ~~~~~~~~VLDlG~--G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~ 89 (306)
..+.+|.+||-.|+ |.|..+..+++ .|+ +|++++.+ +-++.+++ .|. + .++..+-.++. ....
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga-~--~~~~~~~~~~~~~~~~~~~~ 230 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGC-D--RPINYKTEPVGTVLKQEYPE 230 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC-S--EEEETTTSCHHHHHHHHCTT
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCC-c--EEEecCChhHHHHHHHhcCC
Confidence 45788999999993 44777777777 677 89999987 66666544 343 2 12221111110 1125
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+|+-.. + . ..+....+.|+++|+++
T Consensus 231 g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv 258 (362)
T 2c0c_A 231 GVDVVYESV-G----G-----AMFDLAVDALATKGRLI 258 (362)
T ss_dssp CEEEEEECS-C----T-----HHHHHHHHHEEEEEEEE
T ss_pred CCCEEEECC-C----H-----HHHHHHHHHHhcCCEEE
Confidence 799998642 1 1 24555668899999987
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.09 Score=46.31 Aligned_cols=95 Identities=19% Similarity=0.058 Sum_probs=57.2
Q ss_pred hcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC
Q 021852 17 QNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 87 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 87 (306)
+...+.++++||..|+ | .|..+..+++ .|+ +|++++.+ +.++.+++ ..|.. ..+-..+..++. ..
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~---~~g~~--~~~d~~~~~~~~~~~~~~~ 222 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKT---KFGFD--DAFNYKEESDLTAALKRCF 222 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TSCCS--EEEETTSCSCSHHHHHHHC
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCc--eEEecCCHHHHHHHHHHHh
Confidence 3456788999999997 3 3666666666 676 89999987 65555542 23431 111111111110 11
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+|+++... + . ..+....+.|+++|+++
T Consensus 223 ~~~~d~vi~~~------g--~--~~~~~~~~~l~~~G~~v 252 (345)
T 2j3h_A 223 PNGIDIYFENV------G--G--KMLDAVLVNMNMHGRIA 252 (345)
T ss_dssp TTCEEEEEESS------C--H--HHHHHHHTTEEEEEEEE
T ss_pred CCCCcEEEECC------C--H--HHHHHHHHHHhcCCEEE
Confidence 25699998643 1 1 24556668999999987
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.8 Score=40.25 Aligned_cols=120 Identities=9% Similarity=0.119 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcccCC-CCCEEEEEcCCCcHHHHHHHHcC--CCEEEEEechHHHHHHHHHHHHcC-------------
Q 021852 6 VRTKSYQNVIYQNKFLF-KDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQMANMAKQIVEANG------------- 69 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~-~~~~VLDlG~G~G~l~~~~a~~g--~~~v~~iD~s~~~~~a~~~~~~~~------------- 69 (306)
.|+..+.+.+.+..... +...|+-||||.=.....+...+ ..+++=+|..++++.=++.+...+
T Consensus 72 ~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~ 151 (334)
T 3iei_A 72 ARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSED 151 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhccccccc
Confidence 57777777776544433 56799999999877777776532 336777776655544334443311
Q ss_pred ---------CCCeEEEEEceeeeec----------CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 ---------FSNVITVLKGKIEEIE----------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 ---------~~~~v~~~~~d~~~~~----------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-+++...+.+|+.+.. ++....-++++|.+..++ .+.....+++.+..... +|.++
T Consensus 152 ~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL-~~~~~~~ll~~ia~~f~-~~~~i 226 (334)
T 3iei_A 152 TLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM-TPEQSANLLKWAANSFE-RAMFI 226 (334)
T ss_dssp SCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHHHHHCS-SEEEE
T ss_pred ccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC-CHHHHHHHHHHHHHhCC-CceEE
Confidence 1356889999986631 233566789999776655 55677788888876654 45444
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.13 Score=45.65 Aligned_cols=93 Identities=19% Similarity=0.143 Sum_probs=57.1
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee-ee--cCCCceee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE-EI--ELPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~--~~~~~~~D 92 (306)
..+.+|.+||-+|+|. |.++..+|+ .|+ +|++++.+ +-++.+++ .|. + .++...-. ++ .+. +.+|
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~----lGa-~--~v~~~~~~~~~~~~~~-~~~D 245 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGA-D--HYIATLEEGDWGEKYF-DTFD 245 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTC-S--EEEEGGGTSCHHHHSC-SCEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----cCC-C--EEEcCcCchHHHHHhh-cCCC
Confidence 4678899999999865 677777777 677 79999987 66666654 343 2 22221111 11 122 4799
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+-.. +.. ... .+....+.|+++|+++
T Consensus 246 ~vid~~-g~~--~~~----~~~~~~~~l~~~G~iv 273 (360)
T 1piw_A 246 LIVVCA-SSL--TDI----DFNIMPKAMKVGGRIV 273 (360)
T ss_dssp EEEECC-SCS--TTC----CTTTGGGGEEEEEEEE
T ss_pred EEEECC-CCC--cHH----HHHHHHHHhcCCCEEE
Confidence 998642 110 011 2233457899999987
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.11 Score=45.95 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=55.7
Q ss_pred cCCCCCEEEEEcCC--CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE-ceeeeec-----CCCc
Q 021852 20 FLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK-GKIEEIE-----LPVT 89 (306)
Q Consensus 20 ~~~~~~~VLDlG~G--~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~-----~~~~ 89 (306)
.+.++++||..|++ .|..+..+++ .|+ +|++++.+ +.++.+++ .+.. .++. .+..++. ...+
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~~~ 237 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE---VFIDFTKEKDIVGAVLKATDG 237 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC---EEEETTTCSCHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc---eEEecCccHhHHHHHHHHhCC
Confidence 67889999999983 4566555555 676 99999977 65555543 3432 1221 1111111 0112
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+++...- . ...+....+.|+++|+++
T Consensus 238 ~~D~vi~~~g-----~----~~~~~~~~~~l~~~G~iv 266 (347)
T 2hcy_A 238 GAHGVINVSV-----S----EAAIEASTRYVRANGTTV 266 (347)
T ss_dssp CEEEEEECSS-----C----HHHHHHHTTSEEEEEEEE
T ss_pred CCCEEEECCC-----c----HHHHHHHHHHHhcCCEEE
Confidence 7999997531 1 234566678999999987
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.068 Score=47.12 Aligned_cols=90 Identities=19% Similarity=0.128 Sum_probs=56.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCcee
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 91 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~ 91 (306)
.+.++.+||-+|+|. |.++..+++ .|+ +|++++.+ +-++.+++ .|.. .++...-.++. .. ..+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~d~~~~~~~~~~~~~~-~~~ 231 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKV-GGV 231 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHH-SSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC---EEecCCCccHHHHHHHHh-CCC
Confidence 578899999999964 666666666 676 99999987 66666543 3442 12211101110 11 469
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+-.. + . ...+....+.|+++|+++
T Consensus 232 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 258 (339)
T 1rjw_A 232 HAAVVTA-V----S----KPAFQSAYNSIRRGGACV 258 (339)
T ss_dssp EEEEESS-C----C----HHHHHHHHHHEEEEEEEE
T ss_pred CEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 9998642 1 1 124455568899999987
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.61 E-value=0.19 Score=43.86 Aligned_cols=92 Identities=21% Similarity=0.196 Sum_probs=55.2
Q ss_pred cccCCCCCEEEEEcCC--CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----c--CC
Q 021852 18 NKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----E--LP 87 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G--~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~ 87 (306)
...+.++++||..|++ .|.....+++ .|+ +|++++.+ +.++.+++ .+. + . ++...-.+. . ..
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~----~g~-~-~-~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGA-W-Q-VINYREEDLVERLKEITG 206 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTC-S-E-EEETTTSCHHHHHHHHTT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCC-C-E-EEECCCccHHHHHHHHhC
Confidence 4567789999999943 3555555555 677 89999987 66666654 243 1 1 221111111 0 12
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+|+++... + . ..+....+.|+++|+++
T Consensus 207 ~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~iv 236 (327)
T 1qor_A 207 GKKVRVVYDSV-G-----R----DTWERSLDCLQRRGLMV 236 (327)
T ss_dssp TCCEEEEEECS-C-----G----GGHHHHHHTEEEEEEEE
T ss_pred CCCceEEEECC-c-----h----HHHHHHHHHhcCCCEEE
Confidence 34699999753 1 1 23445567899999987
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.085 Score=47.16 Aligned_cols=91 Identities=25% Similarity=0.223 Sum_probs=57.4
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-e-cCCCceeeE
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 93 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~~D~ 93 (306)
..+.+|.+||.+|+|. |.++..+|+ .|+ +|++++.+ +-++.+++ .|. + .++...-.+ . ... ..+|+
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa-~--~vi~~~~~~~~~~~~-~g~Dv 260 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGA-D--EVVNSRNADEMAAHL-KSFDF 260 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTC-S--EEEETTCHHHHHTTT-TCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC-c--EEeccccHHHHHHhh-cCCCE
Confidence 3578899999999975 777777777 566 69999987 66776654 343 2 222211111 1 122 57999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+-.. + .... +....+.|+++|+++
T Consensus 261 vid~~-g----~~~~----~~~~~~~l~~~G~iv 285 (369)
T 1uuf_A 261 ILNTV-A----APHN----LDDFTTLLKRDGTMT 285 (369)
T ss_dssp EEECC-S----SCCC----HHHHHTTEEEEEEEE
T ss_pred EEECC-C----CHHH----HHHHHHHhccCCEEE
Confidence 98532 1 1112 334458899999987
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.052 Score=47.04 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=39.3
Q ss_pred CeEEEEEceeeeec--CCCceeeEEEEcccccccCC---------------c---chHHHHHHHHhhcccCCeEEEe
Q 021852 72 NVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLF---------------E---NMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 72 ~~v~~~~~d~~~~~--~~~~~~D~iv~~~~~~~~~~---------------~---~~~~~~l~~~~~~L~p~G~~ip 128 (306)
.+++++++|+.+.. +++++||+|++++. |.... + ..+..++.++.++|+|||.++.
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPP-Y~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i 95 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPP-YWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVI 95 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCC-CCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCC-CCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 35789999998742 45689999999986 33211 0 1134567788899999999863
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.32 E-value=0.06 Score=46.55 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eeecCCCceeeEEE
Q 021852 21 LFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~D~iv 95 (306)
+.+|.+||-.|+ | .|..+..+++ .|+ +|++++.+ +.++.+++ .|. + .++..+- .++.-.-..+|+|+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga-~--~~~~~~~~~~~~~~~~~~d~vi 194 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGA-E--EAATYAEVPERAKAWGGLDLVL 194 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTC-S--EEEEGGGHHHHHHHTTSEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCC-C--EEEECCcchhHHHHhcCceEEE
Confidence 788999999997 3 3666666666 676 99999987 66665543 343 2 1222111 11110014699998
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
- . +. . .+....+.|+++|+++
T Consensus 195 d-~-g~-----~----~~~~~~~~l~~~G~~v 215 (302)
T 1iz0_A 195 E-V-RG-----K----EVEESLGLLAHGGRLV 215 (302)
T ss_dssp E-C-SC-----T----THHHHHTTEEEEEEEE
T ss_pred E-C-CH-----H----HHHHHHHhhccCCEEE
Confidence 6 3 21 1 2345568999999987
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.43 Score=41.95 Aligned_cols=90 Identities=22% Similarity=0.218 Sum_probs=56.1
Q ss_pred hcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------C
Q 021852 17 QNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~ 86 (306)
+...+.+|.+||-+|+ | .|.++..+++ .|+ +|+++ .+ +-++.+++ .|.. . +. +-.++. .
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~----lGa~--~--i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD----LGAT--P--ID-ASREPEDYAAEHT 212 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH----HTSE--E--EE-TTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH----cCCC--E--ec-cCCCHHHHHHHHh
Confidence 4456788999999994 4 3777777777 566 89999 65 55555543 3442 2 22 211111 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+|+|+-.. + . ..+....+.|+++|.++
T Consensus 213 ~~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv 243 (343)
T 3gaz_A 213 AGQGFDLVYDTL-G----G-----PVLDASFSAVKRFGHVV 243 (343)
T ss_dssp TTSCEEEEEESS-C----T-----HHHHHHHHHEEEEEEEE
T ss_pred cCCCceEEEECC-C----c-----HHHHHHHHHHhcCCeEE
Confidence 235799988532 1 1 24455567899999987
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.16 Score=45.38 Aligned_cols=91 Identities=21% Similarity=0.189 Sum_probs=53.3
Q ss_pred CCCCCEEEEEc-CCC-cHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEE
Q 021852 21 LFKDKVVLDVG-AGT-GILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG-~G~-G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~i 94 (306)
+.+|.+||-.| +|. |.++..+|+ .|+ +|++++.++-.+.+ ++.|.. .++..+-.++. .....+|+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~~~~~~~~~----~~lGa~---~v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVCSQDASELV----RKLGAD---DVIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECGGGHHHH----HHTTCS---EEEETTSSCHHHHHHTSCCBSEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEeChHHHHHH----HHcCCC---EEEECCchHHHHHHhhcCCCCEE
Confidence 67899999999 453 777777777 576 89998843544444 334542 12221111110 112469999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+-.. + .. ...+....+.|+++|+++
T Consensus 253 id~~-g----~~---~~~~~~~~~~l~~~G~iv 277 (375)
T 2vn8_A 253 LDNV-G----GS---TETWAPDFLKKWSGATYV 277 (375)
T ss_dssp EESS-C----TT---HHHHGGGGBCSSSCCEEE
T ss_pred EECC-C----Ch---hhhhHHHHHhhcCCcEEE
Confidence 8542 1 11 113344557899999987
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.18 Score=44.64 Aligned_cols=100 Identities=11% Similarity=0.081 Sum_probs=53.9
Q ss_pred HHhcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce---eeeec-C-
Q 021852 15 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK---IEEIE-L- 86 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~-~- 86 (306)
+.....+.+|.+||-.|+ | .|.++..+|+ .|++.|..++.++-.+..++.+++.|.. .++..+ ...+. .
T Consensus 159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~~ 235 (357)
T 1zsy_A 159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAE---HVITEEELRRPEMKNFF 235 (357)
T ss_dssp HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCS---EEEEHHHHHSGGGGGTT
T ss_pred HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCc---EEEecCcchHHHHHHHH
Confidence 333356788999999997 4 3778888887 6775555665432111111233445542 222211 11111 1
Q ss_pred CC-ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~-~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ..+|+|+-.. +.. ... ...++|+++|+++
T Consensus 236 ~~~~~~Dvvid~~------g~~---~~~-~~~~~l~~~G~iv 267 (357)
T 1zsy_A 236 KDMPQPRLALNCV------GGK---SST-ELLRQLARGGTMV 267 (357)
T ss_dssp SSSCCCSEEEESS------CHH---HHH-HHHTTSCTTCEEE
T ss_pred hCCCCceEEEECC------CcH---HHH-HHHHhhCCCCEEE
Confidence 11 1489988431 111 122 3458999999987
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.35 Score=42.30 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=56.3
Q ss_pred cccCCCCCEEEEEcC--CCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----c--CC
Q 021852 18 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----E--LP 87 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~--G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~ 87 (306)
...+.++++||-.|+ |.|..+..+++ .|+ +|++++.+ +.++.+++ .+. + . ++..+-.+. . ..
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~g~-~-~-~~d~~~~~~~~~i~~~~~ 211 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARK----LGC-H-H-TINYSTQDFAEVVREITG 211 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTC-S-E-EEETTTSCHHHHHHHHHT
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC-C-E-EEECCCHHHHHHHHHHhC
Confidence 456788999999995 44666666665 676 89999987 56666644 243 2 1 221111111 0 11
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+|+++... + . ..+....+.|+++|+++
T Consensus 212 ~~~~d~vi~~~-g----~-----~~~~~~~~~l~~~G~iv 241 (333)
T 1wly_A 212 GKGVDVVYDSI-G----K-----DTLQKSLDCLRPRGMCA 241 (333)
T ss_dssp TCCEEEEEECS-C----T-----TTHHHHHHTEEEEEEEE
T ss_pred CCCCeEEEECC-c----H-----HHHHHHHHhhccCCEEE
Confidence 24699999653 1 1 13445567899999987
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.028 Score=62.29 Aligned_cols=99 Identities=17% Similarity=0.074 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cC-----CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCceeeEE
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AG-----AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDII 94 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g-----~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~i 94 (306)
+..+||+||+|+|..+..+.+ .+ ..+++..|+| ...+.|+++++... ++.-..|..+. .+....||+|
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC-----CCEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccCCCCceeEE
Confidence 567999999999976554433 21 2368888988 77777777765421 22211122111 1123679999
Q ss_pred EEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 95 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 95 v~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
++..+ ++....+...+..++++|+|||.++.
T Consensus 1316 ia~~v---l~~t~~~~~~l~~~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A 1316 VCNCA---LATLGDPAVAVGNMAATLKEGGFLLL 1346 (2512)
T ss_dssp EEECC-----------------------CCEEEE
T ss_pred EEccc---ccccccHHHHHHHHHHhcCCCcEEEE
Confidence 98543 33345667788888899999999874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.4 Score=42.93 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
.+.+||.++.+.|.++..++.. .++.+.-| -....++.+++.|++.+ .+++... .++ ....+|+|+.-+.
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~---~~~~~~~v~~~lp- 109 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD---YPQQPGVVLIKVP- 109 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC---CCSSCSEEEEECC-
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc---cccCCCEEEEEcC-
Confidence 5568999999999999988764 34555445 34456688899999974 3666532 222 2377999997543
Q ss_pred cccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-....+...+..+...|++|+.++
T Consensus 110 ---k~~~~l~~~L~~l~~~l~~~~~i~ 133 (375)
T 4dcm_A 110 ---KTLALLEQQLRALRKVVTSDTRII 133 (375)
T ss_dssp ---SCHHHHHHHHHHHHTTCCTTSEEE
T ss_pred ---CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 223456667778888899999886
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.48 Score=41.68 Aligned_cols=92 Identities=25% Similarity=0.302 Sum_probs=56.7
Q ss_pred ccCCCCCEEEEEcCCC--cHHHHHHHH-c-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-----cCCC
Q 021852 19 KFLFKDKVVLDVGAGT--GILSLFCAK-A-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-----ELPV 88 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~--G~l~~~~a~-~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~ 88 (306)
..+.++++||..|+|+ |..+..+++ . |+ +|+++|.+ +.++.+++ .+. + ..+...+ .+. ....
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~----~g~-~-~~~~~~~-~~~~~~~~~~~~ 237 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKR----AGA-D-YVINASM-QDPLAEIRRITE 237 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHH----HTC-S-EEEETTT-SCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCC-C-EEecCCC-ccHHHHHHHHhc
Confidence 5678899999999984 455555555 5 77 89999987 66666643 243 2 1121111 111 1122
Q ss_pred -ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 -TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 -~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+|+++... + . ...+....+.|+++|+++
T Consensus 238 ~~~~d~vi~~~-g----~----~~~~~~~~~~l~~~G~iv 268 (347)
T 1jvb_A 238 SKGVDAVIDLN-N----S----EKTLSVYPKALAKQGKYV 268 (347)
T ss_dssp TSCEEEEEESC-C----C----HHHHTTGGGGEEEEEEEE
T ss_pred CCCceEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 4799998643 1 1 224555668999999987
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=92.78 E-value=0.18 Score=44.77 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=54.4
Q ss_pred HHhcccCCCC-CEEEEEcC-CC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc------eeee
Q 021852 15 IYQNKFLFKD-KVVLDVGA-GT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG------KIEE 83 (306)
Q Consensus 15 i~~~~~~~~~-~~VLDlG~-G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~------d~~~ 83 (306)
+.+...+.+| .+||-.|+ |. |.++..+|+ .|+ +|+++..+ +-+...++.+++.|.. .++.. ++.+
T Consensus 158 l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~ 233 (364)
T 1gu7_A 158 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGP 233 (364)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHH
T ss_pred HHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHH
Confidence 3333467788 99999997 43 777777777 677 67777643 3311112223444642 12221 1111
Q ss_pred -ec-C---CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 -IE-L---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 -~~-~---~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+. . ....+|+|+-.. + . +... ...++|+++|+++
T Consensus 234 ~i~~~t~~~~~g~Dvvid~~------G--~-~~~~-~~~~~l~~~G~~v 272 (364)
T 1gu7_A 234 TIKEWIKQSGGEAKLALNCV------G--G-KSST-GIARKLNNNGLML 272 (364)
T ss_dssp HHHHHHHHHTCCEEEEEESS------C--H-HHHH-HHHHTSCTTCEEE
T ss_pred HHHHHhhccCCCceEEEECC------C--c-hhHH-HHHHHhccCCEEE
Confidence 10 1 124799998532 1 1 1223 3458999999987
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.15 Score=45.14 Aligned_cols=94 Identities=13% Similarity=0.161 Sum_probs=56.1
Q ss_pred cccCCCC--CEEEEEcCCC--cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C
Q 021852 18 NKFLFKD--KVVLDVGAGT--GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L 86 (306)
Q Consensus 18 ~~~~~~~--~~VLDlG~G~--G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~ 86 (306)
...+.++ ++||-.|++. |..+..+++ .|+++|++++.+ +-++.+++. .|. + . ++...-.++. .
T Consensus 153 ~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~-~-~-~~d~~~~~~~~~~~~~ 226 (357)
T 2zb4_A 153 KGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGF-D-A-AINYKKDNVAEQLRES 226 (357)
T ss_dssp HSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCC-S-E-EEETTTSCHHHHHHHH
T ss_pred hcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCC-c-e-EEecCchHHHHHHHHh
Confidence 3567788 9999999833 555555555 677699999987 555554431 343 1 1 2211111110 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.+|+++... + . ..+....++|+++|+++
T Consensus 227 ~~~~~d~vi~~~-G-------~--~~~~~~~~~l~~~G~iv 257 (357)
T 2zb4_A 227 CPAGVDVYFDNV-G-------G--NISDTVISQMNENSHII 257 (357)
T ss_dssp CTTCEEEEEESC-C-------H--HHHHHHHHTEEEEEEEE
T ss_pred cCCCCCEEEECC-C-------H--HHHHHHHHHhccCcEEE
Confidence 113799999653 1 1 34555668999999987
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.49 E-value=0.2 Score=43.88 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=38.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech----HHHHHHHHHHHHcC
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS----QMANMAKQIVEANG 69 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s----~~~~~a~~~~~~~~ 69 (306)
..+|..|||--||+|..+..+.+.|. +.+++|++ ..++.+++++++.+
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence 46889999999999999999999864 99999987 46778877776544
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.37 E-value=0.25 Score=44.44 Aligned_cols=100 Identities=23% Similarity=0.202 Sum_probs=61.9
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-----ec--CCC
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-----IE--LPV 88 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~--~~~ 88 (306)
..+.+|.+||.+|+|. |.++..+|+ .|+++|+++|.+ +-++.+++ .|. + ++...-.+ +. ...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa-~---~i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF-E---IADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC-E---EEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC-c---EEccCCcchHHHHHHHHhCC
Confidence 4678899999999876 778888887 688789999987 66666643 354 2 23211111 11 122
Q ss_pred ceeeEEEEccccccc-------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~-------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+-.. +.-. .+.......+....+.|+++|+++
T Consensus 253 ~g~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv 297 (398)
T 1kol_A 253 PEVDCAVDAV-GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIG 297 (398)
T ss_dssp SCEEEEEECC-CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEE
T ss_pred CCCCEEEECC-CCcccccccccccccchHHHHHHHHHHHhcCCEEE
Confidence 4799998642 1100 000112234556668999999987
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.36 E-value=0.13 Score=47.68 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=51.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---------------
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP--------------- 87 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------------- 87 (306)
.-+++|+-||.|.+++-+.++|...|.++|++ ..++..+.+.. ......++.+|+.++...
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~ 164 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhhhhccccccchhhHHhhhh
Confidence 35899999999999999999998889999998 55555444431 111234677888766421
Q ss_pred --CceeeEEEEccc
Q 021852 88 --VTKVDIIISEWM 99 (306)
Q Consensus 88 --~~~~D~iv~~~~ 99 (306)
...+|+++..+.
T Consensus 165 ~~~~~~Dvl~gGpP 178 (482)
T 3me5_A 165 QHIPEHDVLLAGFP 178 (482)
T ss_dssp HHSCCCSEEEEECC
T ss_pred hcCCCCCEEEecCC
Confidence 136899998654
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.84 Score=38.59 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=50.1
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEec-h-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC---
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVEC-S-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP--- 87 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~-s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~--- 87 (306)
...++++|-.|++.|+ ++..+++.|+ +|+.++. + +.++...+.++..+ .++.++.+|+.+.. +.
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 104 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETV 104 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 3578899999988763 3555566777 7888764 3 45555555555544 46888999987643 00
Q ss_pred --CceeeEEEEcc
Q 021852 88 --VTKVDIIISEW 98 (306)
Q Consensus 88 --~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 105 ~~~g~iD~lvnnA 117 (271)
T 3v2g_A 105 EALGGLDILVNSA 117 (271)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCCcEEEECC
Confidence 13799999864
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.24 Score=43.10 Aligned_cols=86 Identities=22% Similarity=0.151 Sum_probs=53.4
Q ss_pred CCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCceeeEEEEcc
Q 021852 24 DKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 98 (306)
Q Consensus 24 ~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~iv~~~ 98 (306)
+. ||-.|+ | .|.++..+|+ .|+ +|++++.+ +-.+.+++ .|.. .+ +-..+.... .+....+|+++-.
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-~v-i~~~~~~~~~~~~~~~~d~v~d~- 218 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS----LGAN-RI-LSRDEFAESRPLEKQLWAGAIDT- 218 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTCS-EE-EEGGGSSCCCSSCCCCEEEEEES-
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC-EE-EecCCHHHHHhhcCCCccEEEEC-
Confidence 45 999997 4 3778888887 677 89999977 66776654 3432 11 211121111 1223579988742
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. +. ..+....+.|+++|+++
T Consensus 219 ~-----g~----~~~~~~~~~l~~~G~iv 238 (324)
T 3nx4_A 219 V-----GD----KVLAKVLAQMNYGGCVA 238 (324)
T ss_dssp S-----CH----HHHHHHHHTEEEEEEEE
T ss_pred C-----Cc----HHHHHHHHHHhcCCEEE
Confidence 1 11 15566678999999987
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.25 Score=47.98 Aligned_cols=106 Identities=15% Similarity=0.110 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-----------CC--CEEEEEec---h-HHHHH-----------HHHHHHHc-----C
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-----------GA--AHVYAVEC---S-QMANM-----------AKQIVEAN-----G 69 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-----------g~--~~v~~iD~---s-~~~~~-----------a~~~~~~~-----~ 69 (306)
+.-+|+|+|-|+|...+.+.+. .. -+++++|. + +.+.. +++.++.. |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 3469999999999876666442 11 37999997 4 33322 12222211 1
Q ss_pred -----CC---CeEEEEEceeeeec--CC---CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 70 -----FS---NVITVLKGKIEEIE--LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 70 -----~~---~~v~~~~~d~~~~~--~~---~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+. -.++++.+|+.+.. ++ ..++|.++.+.+......+..-..++..+.++++|||.+..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 11 14667778876542 21 36899999876533333333446788888999999998874
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.98 Score=43.63 Aligned_cols=106 Identities=20% Similarity=0.140 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-----------CC--CEEEEEec---h-HHHHHH-----------HHHHHHcCC--C-
Q 021852 23 KDKVVLDVGAGTGILSLFCAKA-----------GA--AHVYAVEC---S-QMANMA-----------KQIVEANGF--S- 71 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~-----------g~--~~v~~iD~---s-~~~~~a-----------~~~~~~~~~--~- 71 (306)
+.-+|||+|-|+|...+.+.+. .. -+++++|. + +.+..+ ++..+.... +
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 3459999999999876655441 11 26899997 5 444322 222222110 0
Q ss_pred ----------CeEEEEEceeeeec--CC---CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 72 ----------NVITVLKGKIEEIE--LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 72 ----------~~v~~~~~d~~~~~--~~---~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
-.+++..+|+.+.. ++ ...+|.++.+.+......+-.-..++..+.++++|||.+..
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 12445556665432 11 36799999987644443444456788899999999999874
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.62 Score=41.13 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=55.8
Q ss_pred hcccCCCCCEEEEEcCC--CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----c--C
Q 021852 17 QNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----E--L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G--~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~ 86 (306)
+...+.++++||-.|++ .|..+..+++ .|+ +|++++.+ +-++.++ +.+.. .++..+-.++ . .
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~----~~ga~---~~~d~~~~~~~~~~~~~~ 235 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVL----QNGAH---EVFNHREVNYIDKIKKYV 235 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS---EEEETTSTTHHHHHHHHH
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHH----HcCCC---EEEeCCCchHHHHHHHHc
Confidence 34567889999999973 3555555555 676 89999987 6555543 33432 1221111111 0 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+|+++... + . + .+....+.|+++|+++
T Consensus 236 ~~~~~D~vi~~~-G-------~-~-~~~~~~~~l~~~G~iv 266 (351)
T 1yb5_A 236 GEKGIDIIIEML-A-------N-V-NLSKDLSLLSHGGRVI 266 (351)
T ss_dssp CTTCEEEEEESC-H-------H-H-HHHHHHHHEEEEEEEE
T ss_pred CCCCcEEEEECC-C-------h-H-HHHHHHHhccCCCEEE
Confidence 234799998642 1 1 1 3445568899999987
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.6 Score=41.19 Aligned_cols=93 Identities=25% Similarity=0.234 Sum_probs=56.7
Q ss_pred hcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC
Q 021852 17 QNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 87 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 87 (306)
+...+.++.+||-.|+ | .|.++..+++ .|+ +|++++.+ +-++.+++ .|. + .++..+-.++. ..
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa-~--~~~~~~~~~~~~~~~~~~ 232 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER----LGA-K--RGINYRSEDFAAVIKAET 232 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTC-S--EEEETTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCC-C--EEEeCCchHHHHHHHHHh
Confidence 4456788999999953 3 3666666666 677 89999987 66666654 343 2 12221111110 11
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+|+++-.. + .. .+....+.|+++|+++
T Consensus 233 ~~g~Dvvid~~-g-----~~----~~~~~~~~l~~~G~iv 262 (353)
T 4dup_A 233 GQGVDIILDMI-G-----AA----YFERNIASLAKDGCLS 262 (353)
T ss_dssp SSCEEEEEESC-C-----GG----GHHHHHHTEEEEEEEE
T ss_pred CCCceEEEECC-C-----HH----HHHHHHHHhccCCEEE
Confidence 35799998643 1 11 3344557899999987
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.63 E-value=0.19 Score=44.08 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=41.0
Q ss_pred CeEEEEEceeeee-c-CCCceeeEEEEcccccccCC------------cchHHHHHHHHhhcccCCeEEEe
Q 021852 72 NVITVLKGKIEEI-E-LPVTKVDIIISEWMGYFLLF------------ENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 72 ~~v~~~~~d~~~~-~-~~~~~~D~iv~~~~~~~~~~------------~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
+...++++|..+. . ++.+++|+|++++. |.... ...+...+.++.++|+|||.++.
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPP-Y~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i 82 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVV 82 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCC-CCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEE
Confidence 3578999998763 2 56689999999985 43321 12456778888899999999873
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=91.56 E-value=0.69 Score=42.39 Aligned_cols=94 Identities=21% Similarity=0.129 Sum_probs=57.0
Q ss_pred ccCCCCCEEEEEcC-CC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-------------
Q 021852 19 KFLFKDKVVLDVGA-GT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI------------- 81 (306)
Q Consensus 19 ~~~~~~~~VLDlG~-G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~------------- 81 (306)
..+.+|.+||-+|+ |. |.++..+|+ .|+ +|++++.+ +-++.+++ .|...-+.....+.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~ 298 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKE 298 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHH
Confidence 46788999999997 43 777777777 566 88888876 66666644 34421111111111
Q ss_pred -----eeec--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 82 -----EEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 82 -----~~~~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+. .+...+|+|+-.. + . ..+....++|+++|+++
T Consensus 299 ~~~~~~~i~~~t~g~g~Dvvid~~------G--~--~~~~~~~~~l~~~G~iv 341 (456)
T 3krt_A 299 WKRFGKRIRELTGGEDIDIVFEHP------G--R--ETFGASVFVTRKGGTIT 341 (456)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECS------C--H--HHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCcEEEEcC------C--c--hhHHHHHHHhhCCcEEE
Confidence 0010 1235799988532 1 1 24455568999999987
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=1.4 Score=37.53 Aligned_cols=74 Identities=30% Similarity=0.431 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-H-HHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 86 (306)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ + ..+.+.+.++..+ .++.++.+|+.+.. +
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 357899999988763 3455566776 89898865 3 4555555555444 46889999987643 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 122 ~~g~iD~lvnnA 133 (291)
T 3ijr_A 122 QLGSLNILVNNV 133 (291)
T ss_dssp HHSSCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 013689999863
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.54 Score=40.12 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----------C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 87 (306)
.+|+++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+ + .++..+.+|+.+..- .
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999998873 4556667787 89999987 6555443332 3 356778888866430 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-++.|++|.+.
T Consensus 101 ~G~iDiLVNNA 111 (273)
T 4fgs_A 101 AGRIDVLFVNA 111 (273)
T ss_dssp HSCEEEEEECC
T ss_pred cCCCCEEEECC
Confidence 25799999874
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.7 Score=38.57 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----V 88 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----~ 88 (306)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+.. +. .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 467899999988863 3555566777 89999977 66665555565554 47899999987653 00 1
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|++|.+.
T Consensus 82 g~id~lv~nA 91 (252)
T 3h7a_A 82 APLEVTIFNV 91 (252)
T ss_dssp SCEEEEEECC
T ss_pred CCceEEEECC
Confidence 4789999864
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.4 Score=40.49 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 87 (306)
.+|+++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.++..+. ++..+.+|+.+.. -.
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 578999999988873 3566677787 89999987 666666666666653 6888888886643 12
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-++.|++|.+.
T Consensus 84 ~G~iDiLVNNA 94 (255)
T 4g81_D 84 GIHVDILINNA 94 (255)
T ss_dssp TCCCCEEEECC
T ss_pred CCCCcEEEECC
Confidence 36899999974
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=2.3 Score=36.31 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCCCCEEEEEcCC--Cc---HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C---
Q 021852 21 LFKDKVVLDVGAG--TG---ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L--- 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G--~G---~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~--- 86 (306)
..+++++|-.|++ .| .++..+++.|+ +|+.++.+ ...+.+++..+..+ ++.++.+|+.+.. +
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~ 103 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETL 103 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHH
Confidence 3568899999987 33 34556666777 79999877 54455555444433 4788888887653 0
Q ss_pred --CCceeeEEEEcc
Q 021852 87 --PVTKVDIIISEW 98 (306)
Q Consensus 87 --~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 104 ~~~~g~iD~lVnnA 117 (293)
T 3grk_A 104 EKKWGKLDFLVHAI 117 (293)
T ss_dssp HHHTSCCSEEEECC
T ss_pred HHhcCCCCEEEECC
Confidence 124799999874
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.87 Score=34.21 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=51.9
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEE
Q 021852 24 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 96 (306)
Q Consensus 24 ~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~ 96 (306)
..+|+-+|+|. | .++..+.+.|. .|+++|.+ +.++.+++ .+ +.++.+|..+.. .....+|+++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 35788889875 3 22334444565 89999988 66655543 23 567888876532 22357999887
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..- .......+-...+.+.|+..++
T Consensus 78 ~~~------~~~~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 78 TIP------NGYEAGEIVASARAKNPDIEII 102 (140)
T ss_dssp CCS------CHHHHHHHHHHHHHHCSSSEEE
T ss_pred ECC------ChHHHHHHHHHHHHHCCCCeEE
Confidence 431 1111222222345567777665
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=2.3 Score=35.52 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCC--CcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC---
Q 021852 22 FKDKVVLDVGAG--TGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP--- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G--~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~--- 87 (306)
.+++++|-.|++ +|+ ++..+++.|+ +|+.++.+ ...+.+++..+..+- .++.++.+|+.+.. +.
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHH
Confidence 467899999987 553 4556666777 79999876 555555555544432 26889999987653 00
Q ss_pred --CceeeEEEEcc
Q 021852 88 --VTKVDIIISEW 98 (306)
Q Consensus 88 --~~~~D~iv~~~ 98 (306)
.+++|+++.+.
T Consensus 83 ~~~g~id~li~~A 95 (266)
T 3oig_A 83 EQVGVIHGIAHCI 95 (266)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCeeEEEEcc
Confidence 13789999864
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.9 Score=38.25 Aligned_cols=74 Identities=26% Similarity=0.327 Sum_probs=55.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----------C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 87 (306)
.+|+++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.++..+ .++.++.+|+.+..- .
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478999999998874 4556667777 89999988 77777666677666 368889999876530 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-++.|++|.+.
T Consensus 82 ~G~iDiLVNNA 92 (254)
T 4fn4_A 82 YSRIDVLCNNA 92 (254)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 25799999874
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=1.2 Score=39.47 Aligned_cols=86 Identities=21% Similarity=0.224 Sum_probs=49.5
Q ss_pred CCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech----HHHHHHHHHHHHcCCCCeEEEEEce-ee-eecCCCceeeEEE
Q 021852 24 DKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS----QMANMAKQIVEANGFSNVITVLKGK-IE-EIELPVTKVDIII 95 (306)
Q Consensus 24 ~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s----~~~~~a~~~~~~~~~~~~v~~~~~d-~~-~~~~~~~~~D~iv 95 (306)
|++||-+|+|. |.++..+++ .|+ +|++++.+ +-++.+++ .|. + .+..+ +. .+.-....+|+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga-~---~v~~~~~~~~~~~~~~~~d~vi 251 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKT-N---YYNSSNGYDKLKDSVGKFDVII 251 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTC-E---EEECTTCSHHHHHHHCCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCC-c---eechHHHHHHHHHhCCCCCEEE
Confidence 99999999843 455555555 677 99999965 34444433 343 2 22111 10 0000014699998
Q ss_pred EcccccccCCcchHHHHH-HHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVL-YARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l-~~~~~~L~p~G~~i 127 (306)
... + ... .+ ....+.|+++|.++
T Consensus 252 d~~-g----~~~----~~~~~~~~~l~~~G~iv 275 (366)
T 2cdc_A 252 DAT-G----ADV----NILGNVIPLLGRNGVLG 275 (366)
T ss_dssp ECC-C----CCT----HHHHHHGGGEEEEEEEE
T ss_pred ECC-C----ChH----HHHHHHHHHHhcCCEEE
Confidence 643 1 111 23 55668899999987
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=0.95 Score=40.11 Aligned_cols=91 Identities=23% Similarity=0.184 Sum_probs=53.1
Q ss_pred cCC-CCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE-ceeeeec-CCCceeeE
Q 021852 20 FLF-KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK-GKIEEIE-LPVTKVDI 93 (306)
Q Consensus 20 ~~~-~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~-~~~~~~D~ 93 (306)
.+. +|.+||-+|+|. |.++..+|+ .|+ +|++++.+ +-.+.+++ ..|. + .++. .+...+. .. +.+|+
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~---~lGa-~--~v~~~~~~~~~~~~~-~~~D~ 254 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALK---NFGA-D--SFLVSRDQEQMQAAA-GTLDG 254 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHH---TSCC-S--EEEETTCHHHHHHTT-TCEEE
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---hcCC-c--eEEeccCHHHHHHhh-CCCCE
Confidence 456 899999999864 666666666 576 89999977 55555432 2343 2 1222 1111111 22 46999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+-.. + ....+ ....+.|+++|+++
T Consensus 255 vid~~-g----~~~~~----~~~~~~l~~~G~iv 279 (366)
T 1yqd_A 255 IIDTV-S----AVHPL----LPLFGLLKSHGKLI 279 (366)
T ss_dssp EEECC-S----SCCCS----HHHHHHEEEEEEEE
T ss_pred EEECC-C----cHHHH----HHHHHHHhcCCEEE
Confidence 98642 1 11112 23346789999987
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=90.26 E-value=1.1 Score=38.96 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=53.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
..+++||-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+.+...+...++.++.+|+.+.. + .
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 467899999988774 3455566777 89999987 666666555655554347899999987643 0 0
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 85 ~g~id~lv~nA 95 (319)
T 3ioy_A 85 FGPVSILCNNA 95 (319)
T ss_dssp TCCEEEEEECC
T ss_pred CCCCCEEEECC
Confidence 24789999874
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.24 E-value=1 Score=37.62 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----------C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 87 (306)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++...+.+ ..++.++.+|+.+..- .
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQT 79 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence 468899999988763 3455566777 89999977 5544443333 2468899999876530 0
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 80 ~g~id~lv~nA 90 (255)
T 4eso_A 80 LGAIDLLHINA 90 (255)
T ss_dssp HSSEEEEEECC
T ss_pred hCCCCEEEECC
Confidence 14799999864
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.14 E-value=1.2 Score=37.40 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 86 (306)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+.. +
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3568899999998873 3556666777 89999987 66666656665554 46889999987653 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 85 ~~g~id~lv~nA 96 (264)
T 3ucx_A 85 AYGRVDVVINNA 96 (264)
T ss_dssp HTSCCSEEEECC
T ss_pred HcCCCcEEEECC
Confidence 124799999874
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=90.01 E-value=1.1 Score=39.52 Aligned_cols=93 Identities=19% Similarity=0.083 Sum_probs=55.0
Q ss_pred hcccCCCCCEEEEEcCC--CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee----c--C
Q 021852 17 QNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI----E--L 86 (306)
Q Consensus 17 ~~~~~~~~~~VLDlG~G--~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~ 86 (306)
....+.++++||-.|++ .|..+..+++ .|+ +|++++.+ +.++.+++ .+. + . ++..+-.++ . .
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~g~-~-~-~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEK----LGA-A-A-GFNYKKEDFSEATLKFT 227 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTC-S-E-EEETTTSCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCC-c-E-EEecCChHHHHHHHHHh
Confidence 34567889999999843 3555555555 566 89999987 66666643 243 2 1 222111111 0 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+|+++... + . . .+....+.|+++|+++
T Consensus 228 ~~~~~d~vi~~~-G----~-~----~~~~~~~~l~~~G~iv 258 (354)
T 2j8z_A 228 KGAGVNLILDCI-G----G-S----YWEKNVNCLALDGRWV 258 (354)
T ss_dssp TTSCEEEEEESS-C----G-G----GHHHHHHHEEEEEEEE
T ss_pred cCCCceEEEECC-C----c-h----HHHHHHHhccCCCEEE
Confidence 234799998653 1 1 1 2334457889999987
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.92 E-value=1.9 Score=35.90 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=49.3
Q ss_pred cCCCCCEEEEEcCC--CcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C--
Q 021852 20 FLFKDKVVLDVGAG--TGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-- 86 (306)
Q Consensus 20 ~~~~~~~VLDlG~G--~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-- 86 (306)
...++++||-.|++ .|+ ++..+++.|+ +|+.++.+ ...+.+++..+..+ ++.++.+|+.+.. +
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHH
Confidence 35678999999986 442 3445556776 89999876 44555555444443 3778888886643 0
Q ss_pred ---CCceeeEEEEcc
Q 021852 87 ---PVTKVDIIISEW 98 (306)
Q Consensus 87 ---~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 86 ~~~~~g~id~lv~nA 100 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSI 100 (271)
T ss_dssp HHHHCSCEEEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 124799999864
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=89.72 E-value=2.5 Score=36.08 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=47.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
.-|.+++........++++|-+|+|. | ..+..+++.|+++|+.++.+ +-++...+.+...+ .+... +..++
T Consensus 111 ~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~--~~~~l- 184 (281)
T 3o8q_A 111 EGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQ--AFEQL- 184 (281)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEE--EGGGC-
T ss_pred HHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEe--eHHHh-
Confidence 34566665433345789999999972 1 22334455787899999977 54444333333222 24443 33333
Q ss_pred CCCceeeEEEEcc
Q 021852 86 LPVTKVDIIISEW 98 (306)
Q Consensus 86 ~~~~~~D~iv~~~ 98 (306)
. ..+|+||+..
T Consensus 185 -~-~~aDiIInaT 195 (281)
T 3o8q_A 185 -K-QSYDVIINST 195 (281)
T ss_dssp -C-SCEEEEEECS
T ss_pred -c-CCCCEEEEcC
Confidence 2 6799999853
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=89.65 E-value=0.43 Score=40.94 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=48.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
.-|.+++.......++++||-+|+|. | ..+..+++.|+++|+.++.+ +-++...+.+......-++... +..++.
T Consensus 112 ~G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~--~~~~l~ 189 (283)
T 3jyo_A 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGV--DARGIE 189 (283)
T ss_dssp HHHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEE--CSTTHH
T ss_pred HHHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEc--CHHHHH
Confidence 34566666544456789999999972 1 22334455788899999977 5444433334332211123322 222221
Q ss_pred CCCceeeEEEEcc
Q 021852 86 LPVTKVDIIISEW 98 (306)
Q Consensus 86 ~~~~~~D~iv~~~ 98 (306)
-.-..+|+||+-.
T Consensus 190 ~~l~~~DiVInaT 202 (283)
T 3jyo_A 190 DVIAAADGVVNAT 202 (283)
T ss_dssp HHHHHSSEEEECS
T ss_pred HHHhcCCEEEECC
Confidence 0014689999853
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=2.5 Score=36.10 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCC--cH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC---
Q 021852 22 FKDKVVLDVGAGT--GI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP--- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~--G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~--- 87 (306)
..++++|-.|+++ |+ ++..+++.|+ +|+.++.+ +..+.+++..+..+ ++.++.+|+.+.. +.
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 103 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLA 103 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHH
Confidence 4578999999864 43 4556666777 79999977 55555555444443 3578888886643 00
Q ss_pred --CceeeEEEEcc
Q 021852 88 --VTKVDIIISEW 98 (306)
Q Consensus 88 --~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 104 ~~~g~iD~lVnnA 116 (296)
T 3k31_A 104 EEWGSLDFVVHAV 116 (296)
T ss_dssp HHHSCCSEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 14789999874
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=89.45 E-value=0.38 Score=41.94 Aligned_cols=90 Identities=23% Similarity=0.159 Sum_probs=54.5
Q ss_pred cCCCCC-EEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc-ee-ee-e-cCCCce
Q 021852 20 FLFKDK-VVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG-KI-EE-I-ELPVTK 90 (306)
Q Consensus 20 ~~~~~~-~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~-~~-~-~~~~~~ 90 (306)
.+.++. +||-.|+ | .|.++..+++ .|+ +|++++.+ +-++.+++ .|.. . ++.. +. .+ . .+....
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~-~--v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ----LGAS-E--VISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH----HTCS-E--EEEHHHHCSSCCCSSCCCC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc-E--EEECCCchHHHHHHhhcCC
Confidence 456665 8999997 4 3677777776 677 69999987 66666654 3432 1 2211 11 01 1 122357
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++-.. .. + .+....+.|+++|+++
T Consensus 218 ~d~vid~~-----g~----~-~~~~~~~~l~~~G~iv 244 (330)
T 1tt7_A 218 WQGAVDPV-----GG----K-QLASLLSKIQYGGSVA 244 (330)
T ss_dssp EEEEEESC-----CT----H-HHHHHHTTEEEEEEEE
T ss_pred ccEEEECC-----cH----H-HHHHHHHhhcCCCEEE
Confidence 99988532 11 1 3455668999999987
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.26 E-value=4 Score=34.30 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-------------HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-------------QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-------------~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
.++++||-.|++.|+ ++..+++.|+ +|+.+|.+ +.++.+...+...+ .++.++.+|+.+..
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA 84 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence 467899999988763 3455566776 89988843 33344444444444 46889999987643
Q ss_pred -----CC-----CceeeEEEEccccccc---CCcchHH-----------HHHHHHhhcccCCeEEE
Q 021852 86 -----LP-----VTKVDIIISEWMGYFL---LFENMLN-----------TVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -----~~-----~~~~D~iv~~~~~~~~---~~~~~~~-----------~~l~~~~~~L~p~G~~i 127 (306)
+. .+++|++|.+.-.... .....+. .+.+++.+.++++|.++
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv 150 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASII 150 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEE
Confidence 00 1379999986421111 1122222 23445556667778776
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=89.16 E-value=1.4 Score=37.03 Aligned_cols=74 Identities=26% Similarity=0.373 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEec-h-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVEC-S-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~-s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 87 (306)
..++++|-.|++.|+ ++..+++.|+ +|+.++. + +.++...+.++..+ .++.++.+|+.+.. +.
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999988763 3455566777 7888774 3 55555555555554 46889999987643 00
Q ss_pred -CceeeEEEEcc
Q 021852 88 -VTKVDIIISEW 98 (306)
Q Consensus 88 -~~~~D~iv~~~ 98 (306)
.++.|++|.+.
T Consensus 93 ~~g~id~lvnnA 104 (270)
T 3is3_A 93 HFGHLDIAVSNS 104 (270)
T ss_dssp HHSCCCEEECCC
T ss_pred HcCCCCEEEECC
Confidence 13689999864
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.10 E-value=0.35 Score=42.67 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=53.9
Q ss_pred HHhcccCCCCCEEEEEcCC--CcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C
Q 021852 15 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-----L 86 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G--~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~ 86 (306)
+.+...+.+|.+||-.|++ .|.++..+|+ .|+.+|++++.++-.+.++ .|.. .++..+ .++. .
T Consensus 134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~~~~~~~~~-----~ga~---~~~~~~-~~~~~~~~~~ 204 (349)
T 4a27_A 134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIK-----DSVT---HLFDRN-ADYVQEVKRI 204 (349)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEECGGGHHHHG-----GGSS---EEEETT-SCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHH-----cCCc---EEEcCC-ccHHHHHHHh
Confidence 3344567899999999983 3667777777 4567999998544333332 3432 122211 1110 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.+|+|+-.. + . .. +....++|+++|+++
T Consensus 205 ~~~g~Dvv~d~~-g----~-~~----~~~~~~~l~~~G~~v 235 (349)
T 4a27_A 205 SAEGVDIVLDCL-C----G-DN----TGKGLSLLKPLGTYI 235 (349)
T ss_dssp CTTCEEEEEEEC-C----------------CTTEEEEEEEE
T ss_pred cCCCceEEEECC-C----c-hh----HHHHHHHhhcCCEEE
Confidence 236799998532 1 1 11 244568999999987
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=88.99 E-value=1.4 Score=36.86 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCceeeE
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVDI 93 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~D~ 93 (306)
.+|+++|--|+++|+ .+..+++.|+ +|+.+|.+.. +.+.+.+++.+ .++..+.+|+.+.. ...+++|+
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~-~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP-DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC-HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH-HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 578999999998874 4666677887 8888887621 22334445555 36888888886643 23468999
Q ss_pred EEEcc
Q 021852 94 IISEW 98 (306)
Q Consensus 94 iv~~~ 98 (306)
+|.+.
T Consensus 83 LVNNA 87 (247)
T 4hp8_A 83 LVNNA 87 (247)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99874
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.90 E-value=1.5 Score=36.21 Aligned_cols=73 Identities=27% Similarity=0.304 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CCC
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 88 (306)
.++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.++..+ .++.++.+|+.+.. -..
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57889998877653 3455556776 89999977 66666666666555 36889999987643 012
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|++|.+.
T Consensus 81 ~~id~li~~A 90 (247)
T 3lyl_A 81 LAIDILVNNA 90 (247)
T ss_dssp CCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 4689999864
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.82 E-value=1.1 Score=37.22 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec-----C-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~----- 86 (306)
..++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+....-. .++.++.+|+.+.. +
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 457899999988763 3555566777 89999977 6555555555443211 46788888887643 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 84 ~~g~iD~lvnnA 95 (250)
T 3nyw_A 84 KYGAVDILVNAA 95 (250)
T ss_dssp HHCCEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 014799999874
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.63 E-value=1.6 Score=37.25 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--------CC-
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGA--AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--------LP- 87 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~- 87 (306)
.++++|-.|+++|+ ++..+++.|+ .+|+.++.+ +.++.+.+.+....-..++.++.+|+.+.. ..
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 111 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ 111 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999988763 2344455555 389999977 666665555554322347889999987653 11
Q ss_pred -CceeeEEEEcc
Q 021852 88 -VTKVDIIISEW 98 (306)
Q Consensus 88 -~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 112 ~~g~iD~lVnnA 123 (287)
T 3rku_A 112 EFKDIDILVNNA 123 (287)
T ss_dssp GGCSCCEEEECC
T ss_pred hcCCCCEEEECC
Confidence 14799999874
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=1.8 Score=37.51 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=55.3
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-ecCCCceeeEEEEccc
Q 021852 25 KVVLDVGAGT--GILSLFCAKAGAA-HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVDIIISEWM 99 (306)
Q Consensus 25 ~~VLDlG~G~--G~l~~~~a~~g~~-~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~D~iv~~~~ 99 (306)
.+|.-||+|. |.++..+++.|.. +|+++|.+ +.++.++ +.|..+ -...+..+ . ....|+|+...
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~----~~G~~~---~~~~~~~~~~---~~~aDvVilav- 102 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID---EGTTSIAKVE---DFSPDFVMLSS- 102 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS---EEESCTTGGG---GGCCSEEEECS-
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH----HCCCcc---hhcCCHHHHh---hccCCEEEEeC-
Confidence 6899999886 3556666667753 89999988 6555543 334322 11223332 1 14689998753
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.......++..+...++++.+++
T Consensus 103 -----p~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 103 -----PVRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp -----CGGGHHHHHHHHHHHSCTTCEEE
T ss_pred -----CHHHHHHHHHHHhhccCCCcEEE
Confidence 22345667777878889988776
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.43 E-value=1.2 Score=37.31 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-CCcee
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTKV 91 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~~ 91 (306)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+....+.++.+|+.+.. . .-+++
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 467899999887763 3445556776 89999977 555555455554443346788888876542 0 12478
Q ss_pred eEEEEcc
Q 021852 92 DIIISEW 98 (306)
Q Consensus 92 D~iv~~~ 98 (306)
|++|.+.
T Consensus 87 d~lv~nA 93 (267)
T 3t4x_A 87 DILINNL 93 (267)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999864
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=88.40 E-value=0.37 Score=42.13 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=39.2
Q ss_pred CeEEEE-Eceeeeec--CCCceeeEEEEcccccccC------C---cchHHHHHHHHhhcccCCeEEE
Q 021852 72 NVITVL-KGKIEEIE--LPVTKVDIIISEWMGYFLL------F---ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 72 ~~v~~~-~~d~~~~~--~~~~~~D~iv~~~~~~~~~------~---~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....++ ++|..+.. ++.+++|+|++++. |... . ...+...+.++.++|+|||.++
T Consensus 37 ~~~~l~i~gD~l~~L~~l~~~svDlI~tDPP-Y~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~ 103 (319)
T 1eg2_A 37 TTRHVYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIA 103 (319)
T ss_dssp CEEEEEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccceEEECCcHHHHHHhCccCCcCEEEECCC-CCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 346777 99986642 56679999999985 4332 1 1245566777789999999987
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=88.32 E-value=0.52 Score=47.53 Aligned_cols=70 Identities=24% Similarity=0.190 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee---------------cC
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI---------------EL 86 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------------~~ 86 (306)
..+++|+-||.|.+++-+.++|. ..|.|+|++ ..++..+.+. + ...++.+|+.++ .+
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p-~~~~~~~DI~~l~~~~~~~di~~~~~~~l 613 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----P-GSTVFTEDCNILLKLVMAGETTNSRGQRL 613 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----T-TSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----C-CCccccccHHHHhhhccchhhhhhhhhhc
Confidence 45899999999999999999997 678899998 5554444432 1 245666665432 02
Q ss_pred C-CceeeEEEEccc
Q 021852 87 P-VTKVDIIISEWM 99 (306)
Q Consensus 87 ~-~~~~D~iv~~~~ 99 (306)
+ .+.+|+|+..+.
T Consensus 614 p~~~~vDll~GGpP 627 (1002)
T 3swr_A 614 PQKGDVEMLCGGPP 627 (1002)
T ss_dssp CCTTTCSEEEECCC
T ss_pred ccCCCeeEEEEcCC
Confidence 2 247999998654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=87.66 E-value=0.33 Score=43.20 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 23 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 23 ~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
++++|+-+|+|. |..+..+++ .|+ +|+++|.+ +-++.+++.... .+..+..+..++.-.-..+|+|+....
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~ 239 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVL 239 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCC
Confidence 458999999964 444444444 687 99999987 666666544321 222222221121100135899987432
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
......... +.....+.++|+|+++
T Consensus 240 ~~~~~~~~l---i~~~~~~~~~~g~~iv 264 (361)
T 1pjc_A 240 VPGRRAPIL---VPASLVEQMRTGSVIV 264 (361)
T ss_dssp CTTSSCCCC---BCHHHHTTSCTTCEEE
T ss_pred cCCCCCCee---cCHHHHhhCCCCCEEE
Confidence 110000000 1122346789999887
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=87.63 E-value=2.2 Score=37.85 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCC--CcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCceeeE
Q 021852 22 FKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVDI 93 (306)
Q Consensus 22 ~~~~~VLDlG~G--~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~D~ 93 (306)
.+|.+||-+|++ .|.++..+|+ .|+ +|+++-..+-++.++ +.|.. .++...-.++. ...+.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATCSPHNFDLAK----SRGAE---EVFDYRAPNLAQTIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECGGGHHHHH----HTTCS---EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCHHHHHHHH----HcCCc---EEEECCCchHHHHHHHHccCCccE
Confidence 788999999983 4788888887 676 888875225555554 34542 23322111111 12245999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcc-cCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L-~p~G~~i 127 (306)
++-.. .. +..+....+.| +++|+++
T Consensus 235 v~d~~-----g~----~~~~~~~~~~l~~~~G~iv 260 (371)
T 3gqv_A 235 ALDCI-----TN----VESTTFCFAAIGRAGGHYV 260 (371)
T ss_dssp EEESS-----CS----HHHHHHHHHHSCTTCEEEE
T ss_pred EEECC-----Cc----hHHHHHHHHHhhcCCCEEE
Confidence 98532 11 12344445667 6999987
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=86.72 E-value=1 Score=41.00 Aligned_cols=94 Identities=22% Similarity=0.138 Sum_probs=55.9
Q ss_pred ccCCCCCEEEEEcC-CC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-------------
Q 021852 19 KFLFKDKVVLDVGA-GT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI------------- 81 (306)
Q Consensus 19 ~~~~~~~~VLDlG~-G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~------------- 81 (306)
..+.+|++||-.|+ |. |.++..+++ .|+ +|++++.+ +-++.++ +.|...-+.....+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVR----ALGCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----hcCCCEEEecccccccccccccccccch
Confidence 56788999999997 43 667777777 566 88888876 6566554 345422111111111
Q ss_pred ------eeec-CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 82 ------EEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 82 ------~~~~-~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+. .....+|+|+-.. + . ..+....+.|+++|.++
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvid~~------G--~--~~~~~~~~~l~~~G~iv 333 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVFEHT------G--R--VTFGLSVIVARRGGTVV 333 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECS------C--H--HHHHHHHHHSCTTCEEE
T ss_pred hhhHHHHHHHHHhCCCceEEEECC------C--c--hHHHHHHHHHhcCCEEE
Confidence 0000 0135799998642 1 1 13455567899999987
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=86.63 E-value=0.95 Score=38.35 Aligned_cols=74 Identities=26% Similarity=0.351 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC---------CC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL---------PV 88 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~ 88 (306)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+... ..
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999987763 3455566777 89999977 55555555555544 468899999876430 01
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|++|.+.
T Consensus 108 g~iD~lvnnA 117 (275)
T 4imr_A 108 APVDILVINA 117 (275)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4789999864
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.50 E-value=1.3 Score=39.04 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=32.8
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-c-CCCEEEEEech-HHHHHHH
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-A-GAAHVYAVECS-QMANMAK 62 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~-g~~~v~~iD~s-~~~~~a~ 62 (306)
..+.+|.+||-+|+|. |.++..+|+ . |+ +|+++|.+ +-++.++
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~ 228 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAE 228 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHH
Confidence 4578899999999964 566666676 5 76 89999987 6666654
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.41 E-value=3 Score=35.09 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 87 (306)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.++..+...++.++.+|+.+.. +.
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 357899999876652 2344455676 89999977 555555555666565557888888886643 00
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|+||.+.
T Consensus 109 ~g~iD~vi~~A 119 (279)
T 1xg5_A 109 HSGVDICINNA 119 (279)
T ss_dssp HCCCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 13689999864
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=86.37 E-value=2.3 Score=35.26 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCcHHHH----HHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC----
Q 021852 23 KDKVVLDVGAGTGILSL----FCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 87 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~----~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 87 (306)
++++||-.|++. .++. .+++ .|+ +|+.++.+ +-++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 3 ~~k~vlITGasg-gIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (276)
T 1wma_A 3 GIHVALVTGGNK-GIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK 78 (276)
T ss_dssp CCCEEEESSCSS-HHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence 467888887654 4443 4455 566 89999976 55555555555444 35788888887643 00
Q ss_pred -CceeeEEEEcc
Q 021852 88 -VTKVDIIISEW 98 (306)
Q Consensus 88 -~~~~D~iv~~~ 98 (306)
.+++|+||.+.
T Consensus 79 ~~g~id~li~~A 90 (276)
T 1wma_A 79 EYGGLDVLVNNA 90 (276)
T ss_dssp HHSSEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 12799999864
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.30 E-value=3.5 Score=35.08 Aligned_cols=73 Identities=25% Similarity=0.343 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech---HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC----
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS---QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 87 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 87 (306)
+++++|-.|++.|+ ++..+++.|+ +|+.++.+ ...+.+.+.++..+ .++.++.+|+.+.. +.
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 57899999987763 3455566777 78888864 34444555555554 46888888886643 00
Q ss_pred -CceeeEEEEcc
Q 021852 88 -VTKVDIIISEW 98 (306)
Q Consensus 88 -~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 125 ~~g~iD~lv~nA 136 (294)
T 3r3s_A 125 ALGGLDILALVA 136 (294)
T ss_dssp HHTCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 14789999864
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.19 E-value=2.8 Score=34.54 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 87 (306)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999987763 3555566776 79999987 66666555555544 47889999987643 00
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 84 ~g~id~li~~A 94 (253)
T 3qiv_A 84 FGGIDYLVNNA 94 (253)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 13799999874
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.08 E-value=0.58 Score=39.43 Aligned_cols=53 Identities=11% Similarity=-0.010 Sum_probs=36.7
Q ss_pred EEEEEceeeeec--CCCceeeEEEEcccccccCCc------------chHHHHHHHHhhcccCCeEEE
Q 021852 74 ITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFE------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 74 v~~~~~d~~~~~--~~~~~~D~iv~~~~~~~~~~~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++++|..+.. ++.+++|+|+++++ |..... ..+...+..+.++|+|+|.++
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPP-Y~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~ 71 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPP-YNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLY 71 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCC-CSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCC-CCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 357788875532 45679999999985 433211 145567777889999999986
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=86.02 E-value=3.4 Score=34.74 Aligned_cols=70 Identities=9% Similarity=0.130 Sum_probs=47.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---------CCC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---------LPV 88 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 88 (306)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+ ..++.++.+|+.+.. -..
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSEDSVLAAIEAANQL 101 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 457899999988763 3455566777 89999977 5554443333 246889999987643 112
Q ss_pred ceeeEEEEc
Q 021852 89 TKVDIIISE 97 (306)
Q Consensus 89 ~~~D~iv~~ 97 (306)
+..|++|.+
T Consensus 102 ~~id~lv~~ 110 (281)
T 3ppi_A 102 GRLRYAVVA 110 (281)
T ss_dssp SEEEEEEEC
T ss_pred CCCCeEEEc
Confidence 478999976
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.83 E-value=0.8 Score=39.80 Aligned_cols=91 Identities=21% Similarity=0.176 Sum_probs=53.3
Q ss_pred cCCCCC-EEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-ee-e-cCCCcee
Q 021852 20 FLFKDK-VVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EE-I-ELPVTKV 91 (306)
Q Consensus 20 ~~~~~~-~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~-~-~~~~~~~ 91 (306)
.+.++. +||-.|+ | .|.++..+++ .|+ +|++++.+ +-++.+++ .|.. .+ +-..+. .+ . .+....+
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~-~~-i~~~~~~~~~~~~~~~~~~ 217 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAK-EV-LAREDVMAERIRPLDKQRW 217 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCS-EE-EECC---------CCSCCE
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCc-EE-EecCCcHHHHHHHhcCCcc
Confidence 456665 8999997 3 3777777777 676 79999987 66666543 3442 11 111111 11 1 1223579
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+-.. + . . .+....+.|+++|+++
T Consensus 218 d~vid~~-g----~-~----~~~~~~~~l~~~G~~v 243 (328)
T 1xa0_A 218 AAAVDPV-G----G-R----TLATVLSRMRYGGAVA 243 (328)
T ss_dssp EEEEECS-T----T-T----THHHHHHTEEEEEEEE
T ss_pred cEEEECC-c----H-H----HHHHHHHhhccCCEEE
Confidence 9988532 1 1 1 2344557899999987
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=85.79 E-value=0.81 Score=40.22 Aligned_cols=88 Identities=17% Similarity=0.103 Sum_probs=48.5
Q ss_pred CCC-CEEEEE-cCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCce
Q 021852 22 FKD-KVVLDV-GAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTK 90 (306)
Q Consensus 22 ~~~-~~VLDl-G~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~ 90 (306)
.++ .+||-. |+|. |.++..+++ .|+ +|++++.+ +-++.+++ .|. + .++..+-.++. .....
T Consensus 162 ~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga-~--~~~~~~~~~~~~~v~~~~~~~g 233 (349)
T 3pi7_A 162 QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKD----IGA-A--HVLNEKAPDFEATLREVMKAEQ 233 (349)
T ss_dssp HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHH----HTC-S--EEEETTSTTHHHHHHHHHHHHC
T ss_pred hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC-C--EEEECCcHHHHHHHHHHhcCCC
Confidence 344 566654 3332 555555555 677 99999977 66666654 343 2 22222111111 01246
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++-.. + .. ......+.|+++|+++
T Consensus 234 ~D~vid~~-g-----~~----~~~~~~~~l~~~G~iv 260 (349)
T 3pi7_A 234 PRIFLDAV-T-----GP----LASAIFNAMPKRARWI 260 (349)
T ss_dssp CCEEEESS-C-----HH----HHHHHHHHSCTTCEEE
T ss_pred CcEEEECC-C-----Ch----hHHHHHhhhcCCCEEE
Confidence 99998632 1 11 1244557899999987
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=85.45 E-value=0.4 Score=42.90 Aligned_cols=97 Identities=18% Similarity=0.117 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
.++++|+-+|+|. |......++ .|+ +|+++|.+ +-++.+++.. +. .+.....+..++.---..+|+|+...
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l~~aDvVi~~~ 239 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAVKRADLVIGAV 239 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHHcCCCEEEECC
Confidence 4678999999965 433333333 677 89999987 5555554322 32 12222111111110013689999742
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.......... +.....+.++|||+++
T Consensus 240 ~~p~~~t~~l---i~~~~l~~mk~g~~iV 265 (377)
T 2vhw_A 240 LVPGAKAPKL---VSNSLVAHMKPGAVLV 265 (377)
T ss_dssp CCTTSCCCCC---BCHHHHTTSCTTCEEE
T ss_pred CcCCCCCcce---ecHHHHhcCCCCcEEE
Confidence 1010000011 1233446789999887
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.24 E-value=1.5 Score=37.22 Aligned_cols=76 Identities=13% Similarity=0.258 Sum_probs=47.2
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 86 (306)
...++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+- ..+.++.+|+.+.. +
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~ 107 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRA 107 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3468899999987763 3445556777 89999977 555555444443332 34688888887653 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 108 ~~g~iD~lvnnA 119 (281)
T 4dry_A 108 EFARLDLLVNNA 119 (281)
T ss_dssp HHSCCSEEEECC
T ss_pred HcCCCCEEEECC
Confidence 014789999874
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=85.21 E-value=3.6 Score=34.90 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=46.0
Q ss_pred HHHHH-HHhcccCCCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 10 SYQNV-IYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 10 ~~~~a-i~~~~~~~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
-|.++ +.......+++++|-+|+|. | ..+..+++.|+++|+.++.+ +-++...+.+.. ..+..+ ...++.
T Consensus 105 G~~~~lL~~~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~----~~~~~~--~~~~l~ 178 (272)
T 3pwz_A 105 GLLRDIEENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH----SRLRIS--RYEALE 178 (272)
T ss_dssp HHHHHHHTTSCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC----TTEEEE--CSGGGT
T ss_pred HHHHHHHHHcCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc----CCeeEe--eHHHhc
Confidence 45565 54332335789999999972 1 22334455788899999876 443333333221 124443 233332
Q ss_pred CCCceeeEEEEcc
Q 021852 86 LPVTKVDIIISEW 98 (306)
Q Consensus 86 ~~~~~~D~iv~~~ 98 (306)
...+|+||+..
T Consensus 179 --~~~~DivInaT 189 (272)
T 3pwz_A 179 --GQSFDIVVNAT 189 (272)
T ss_dssp --TCCCSEEEECS
T ss_pred --ccCCCEEEECC
Confidence 26799999853
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=85.15 E-value=1.2 Score=37.58 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++.+|+.+.. + .
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQ 100 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 568899999977763 3455566777 89999977 65555555555544 36888888887653 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 101 ~g~iD~lv~nA 111 (271)
T 4ibo_A 101 GIDVDILVNNA 111 (271)
T ss_dssp TCCCCEEEECC
T ss_pred CCCCCEEEECC
Confidence 24799999874
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=84.96 E-value=3.3 Score=35.42 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 87 (306)
..+++||-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+.. +.
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 467899999988763 3455566776 89999987 66666666666554 36889999987653 00
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 106 ~g~id~lvnnA 116 (301)
T 3tjr_A 106 LGGVDVVFSNA 116 (301)
T ss_dssp HSSCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 13789999874
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=84.67 E-value=2.7 Score=34.92 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 87 (306)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+.. +.
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999988763 3455566777 79999977 66666655565554 46889999987653 00
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 87 ~g~id~lv~nA 97 (256)
T 3gaf_A 87 FGKITVLVNNA 97 (256)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 13789999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.23 E-value=0.81 Score=40.73 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=49.2
Q ss_pred CCCCEEEEEcCCC-cHHHHHH-HHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 22 FKDKVVLDVGAGT-GILSLFC-AKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 22 ~~~~~VLDlG~G~-G~l~~~~-a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
.++++|+-+|+|. |...... +..|+ +|+++|.+ +-++.+++. .+. .+.....+..++.---..+|+|+...
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~---~g~--~~~~~~~~~~~l~~~~~~~DvVi~~~ 237 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDV---FGG--RVITLTATEANIKKSVQHADLLIGAV 237 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---TTT--SEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh---cCc--eEEEecCCHHHHHHHHhCCCEEEECC
Confidence 3568999999853 3332222 33677 89999987 555544332 232 23222222222210014689998753
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.... ......+.....+.+++||+++
T Consensus 238 g~~~---~~~~~li~~~~l~~mk~gg~iV 263 (369)
T 2eez_A 238 LVPG---AKAPKLVTRDMLSLMKEGAVIV 263 (369)
T ss_dssp C----------CCSCHHHHTTSCTTCEEE
T ss_pred CCCc---cccchhHHHHHHHhhcCCCEEE
Confidence 2110 0000011234456789999887
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=84.13 E-value=3.1 Score=34.68 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=51.6
Q ss_pred CCCCEEEEEcC-CCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC----
Q 021852 22 FKDKVVLDVGA-GTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 87 (306)
Q Consensus 22 ~~~~~VLDlG~-G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 87 (306)
.++++||-.|+ |+|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+- .++.++.+|+.+.. +.
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGL-GRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCS-SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCC-CceEEEEeCCCCHHHHHHHHHHHHH
Confidence 46789999998 6763 4556667776 79999977 655555555544432 47999999987653 00
Q ss_pred -CceeeEEEEcc
Q 021852 88 -VTKVDIIISEW 98 (306)
Q Consensus 88 -~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 98 ~~g~id~li~~A 109 (266)
T 3o38_A 98 KAGRLDVLVNNA 109 (266)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCcEEEECC
Confidence 13789999864
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=84.02 E-value=3 Score=32.61 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=38.9
Q ss_pred CCEEEEEcCCC-cH-HHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----C-CCceeeEE
Q 021852 24 DKVVLDVGAGT-GI-LSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----L-PVTKVDII 94 (306)
Q Consensus 24 ~~~VLDlG~G~-G~-l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~~D~i 94 (306)
+.+|+-+|+|. |. ++..+.+. |. +|+++|.+ +.++.++ ..+ +.++.+|..+.. . ....+|+|
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~----~~g----~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHR----SEG----RNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHH----HTT----CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHH----HCC----CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 56899998875 32 23334445 65 79999988 5554443 233 345666654321 1 23568999
Q ss_pred EEc
Q 021852 95 ISE 97 (306)
Q Consensus 95 v~~ 97 (306)
+.-
T Consensus 110 i~~ 112 (183)
T 3c85_A 110 LLA 112 (183)
T ss_dssp EEC
T ss_pred EEe
Confidence 874
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=83.91 E-value=3.5 Score=34.31 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC----
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 87 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 87 (306)
..++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~ 102 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLA 102 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHH
Confidence 3567899999977652 2444555676 79999987 66666656565554 46889999987643 00
Q ss_pred -CceeeEEEEcc
Q 021852 88 -VTKVDIIISEW 98 (306)
Q Consensus 88 -~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 103 ~~g~id~lv~~A 114 (262)
T 3rkr_A 103 AHGRCDVLVNNA 114 (262)
T ss_dssp HHSCCSEEEECC
T ss_pred hcCCCCEEEECC
Confidence 14689999864
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.75 E-value=3.3 Score=34.77 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----CC
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 88 (306)
.++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+.. + ..
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46789999988763 3455566777 79999987 66666666665554 46888888886643 0 01
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
+++|++|.+.
T Consensus 80 g~iD~lVnnA 89 (264)
T 3tfo_A 80 GRIDVLVNNA 89 (264)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4799999864
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=83.71 E-value=4.3 Score=33.87 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-cCCCCeEEEEEceeeeec-----C-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-NGFSNVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~-----~----- 86 (306)
..++++|-.|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.+.. .+- .++.++.+|+.+.. +
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPG-ARLFASVCDVLDALQVRAFAEACER 83 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTT-CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999988763 3455566777 79999977 655555555544 332 35888999987643 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..++.|++|.+.
T Consensus 84 ~~g~id~lvnnA 95 (265)
T 3lf2_A 84 TLGCASILVNNA 95 (265)
T ss_dssp HHCSCSEEEECC
T ss_pred HcCCCCEEEECC
Confidence 014789999864
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=83.52 E-value=2.9 Score=34.62 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee--eeec-----C---
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI--EEIE-----L--- 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~-----~--- 86 (306)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+- .++.++..|+ .+.. +
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHH
Confidence 3568899999988763 3455566777 89999977 555554444443322 2567888887 4332 0
Q ss_pred --CCceeeEEEEcc
Q 021852 87 --PVTKVDIIISEW 98 (306)
Q Consensus 87 --~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 87 ~~~~g~id~lv~nA 100 (252)
T 3f1l_A 87 AVNYPRLDGVLHNA 100 (252)
T ss_dssp HHHCSCCSEEEECC
T ss_pred HHhCCCCCEEEECC
Confidence 124799999874
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=83.51 E-value=2.9 Score=35.43 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=47.9
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-CCce
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTK 90 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~ 90 (306)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+ .+..++.++.+|+.+.. . .-++
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 86 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAAR-----TMAGQVEVRELDLQDLSSVRRFADGVSG 86 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHT-----TSSSEEEEEECCTTCHHHHHHHHHTCCC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH-----HhcCCeeEEEcCCCCHHHHHHHHHhcCC
Confidence 3468899999987753 3445555676 89999977 54443322 22457999999987653 1 1147
Q ss_pred eeEEEEcc
Q 021852 91 VDIIISEW 98 (306)
Q Consensus 91 ~D~iv~~~ 98 (306)
+|++|.+.
T Consensus 87 iD~lv~nA 94 (291)
T 3rd5_A 87 ADVLINNA 94 (291)
T ss_dssp EEEEEECC
T ss_pred CCEEEECC
Confidence 89999864
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=83.49 E-value=4.5 Score=29.93 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=40.8
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEE
Q 021852 24 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 96 (306)
Q Consensus 24 ~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~ 96 (306)
..+|+-+|+|. | .++..+++.|. +|+++|.+ +.++.+++ .+ +.++.+|..+.. .....+|+|+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 45789999865 2 22334444565 89999988 65555433 22 467788876532 22357899887
Q ss_pred c
Q 021852 97 E 97 (306)
Q Consensus 97 ~ 97 (306)
.
T Consensus 77 ~ 77 (141)
T 3llv_A 77 T 77 (141)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=83.37 E-value=3.6 Score=34.73 Aligned_cols=75 Identities=15% Similarity=0.241 Sum_probs=49.3
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC----
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 87 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 87 (306)
..+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.++..+ .++.++.+|+.+.. +.
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVE 97 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999988763 3455566777 79999977 65665555555544 46889999987643 00
Q ss_pred -CceeeEEEEcc
Q 021852 88 -VTKVDIIISEW 98 (306)
Q Consensus 88 -~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 98 ~~g~id~lv~nA 109 (279)
T 3sju_A 98 RFGPIGILVNSA 109 (279)
T ss_dssp HHCSCCEEEECC
T ss_pred HcCCCcEEEECC
Confidence 13789999864
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=83.32 E-value=1.1 Score=37.50 Aligned_cols=75 Identities=24% Similarity=0.353 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEechH--------------------HHHHHHHHHHHcCCCCeEEEEEce
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ--------------------MANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s~--------------------~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
.+++|+-+|||. | ..+..+++.|.++++.+|.+. -++.+++.+.+.+-.-+++.+..+
T Consensus 30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 109 (249)
T 1jw9_B 30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 109 (249)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 457999999984 3 345566778988999999652 345555555543322246666554
Q ss_pred eeeecCC--CceeeEEEEc
Q 021852 81 IEEIELP--VTKVDIIISE 97 (306)
Q Consensus 81 ~~~~~~~--~~~~D~iv~~ 97 (306)
+.+.... -..+|+||..
T Consensus 110 ~~~~~~~~~~~~~DvVi~~ 128 (249)
T 1jw9_B 110 LDDAELAALIAEHDLVLDC 128 (249)
T ss_dssp CCHHHHHHHHHTSSEEEEC
T ss_pred CCHhHHHHHHhCCCEEEEe
Confidence 4321110 1468999974
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=83.25 E-value=1.4 Score=38.26 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=31.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 55 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s 55 (306)
.-|.+++........++++|-+|+|- | ..+..+++.|+++|+.+..+
T Consensus 133 ~Gf~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt 181 (312)
T 3t4e_A 133 TGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK 181 (312)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred HHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 34666676543345789999999873 2 22344556788899988865
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.78 E-value=3.3 Score=34.08 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=48.3
Q ss_pred cCCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCc
Q 021852 20 FLFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVT 89 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~ 89 (306)
...++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.+ ..++.++.+|+.+.. -..+
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 83 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLISKTS 83 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHTCS
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHHhcC
Confidence 45678899999987763 3445556776 89999977 5554443333 136888888876543 1124
Q ss_pred eeeEEEEcc
Q 021852 90 KVDIIISEW 98 (306)
Q Consensus 90 ~~D~iv~~~ 98 (306)
++|++|.+.
T Consensus 84 ~id~li~~A 92 (249)
T 3f9i_A 84 NLDILVCNA 92 (249)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEECC
Confidence 799999864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=82.56 E-value=2.3 Score=38.48 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=54.4
Q ss_pred CCEEEEEcCCC-cH-HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEE
Q 021852 24 DKVVLDVGAGT-GI-LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 96 (306)
Q Consensus 24 ~~~VLDlG~G~-G~-l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~ 96 (306)
+.+|+-+|+|. |. ++..+.+.|. .|+++|.+ +.++.+++ .| +.++.+|..+.. ..-..+|+||+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence 45688888875 32 2333334554 89999998 77766653 23 468888987653 23467999887
Q ss_pred cccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ........+-...+.+.|+..++
T Consensus 75 ~~------~~~~~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 75 AI------DDPQTNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp CC------SSHHHHHHHHHHHHHHCTTCEEE
T ss_pred CC------CChHHHHHHHHHHHHhCCCCeEE
Confidence 43 11222333334446677876665
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=82.55 E-value=5.1 Score=33.66 Aligned_cols=76 Identities=25% Similarity=0.257 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec-----CC----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE-----LP---- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~~---- 87 (306)
..+++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+-. .++.++.+|+.+.. +.
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999987763 3455566777 89999977 6555555555544321 27889999987643 00
Q ss_pred -CceeeEEEEcc
Q 021852 88 -VTKVDIIISEW 98 (306)
Q Consensus 88 -~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 88 ~~g~id~lv~nA 99 (281)
T 3svt_A 88 WHGRLHGVVHCA 99 (281)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 13689999864
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.50 E-value=3.7 Score=34.77 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 87 (306)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK 102 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999988763 3445566777 89999977 65555555454333 46889999987643 00
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 103 ~g~iD~lVnnA 113 (283)
T 3v8b_A 103 FGHLDIVVANA 113 (283)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEEEECC
Confidence 14799999864
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=82.32 E-value=3 Score=35.80 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech--H-----------------HHHHHHHHHHHcCCCCeEEEEEcee
Q 021852 23 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS--Q-----------------MANMAKQIVEANGFSNVITVLKGKI 81 (306)
Q Consensus 23 ~~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s--~-----------------~~~~a~~~~~~~~~~~~v~~~~~d~ 81 (306)
..++||-+|||. | ..+..+++.|..+++.+|.+ + -++.|++.+++.+-.-+++.+..++
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l 114 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNI 114 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCCT
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecccC
Confidence 467999999995 4 45677888899999999854 1 2445566665544333566666555
Q ss_pred eeec-C-------------CCceeeEEEEc
Q 021852 82 EEIE-L-------------PVTKVDIIISE 97 (306)
Q Consensus 82 ~~~~-~-------------~~~~~D~iv~~ 97 (306)
.+.. + ....+|+|+..
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~DlVid~ 144 (292)
T 3h8v_A 115 TTVENFQHFMDRISNGGLEEGKPVDLVLSC 144 (292)
T ss_dssp TSHHHHHHHHHHHHHBSSSTTBCCSEEEEC
T ss_pred CcHHHHHHHhhhhcccccccCCCCCEEEEC
Confidence 3210 0 11479999963
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=82.31 E-value=14 Score=31.12 Aligned_cols=88 Identities=22% Similarity=0.244 Sum_probs=51.9
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE--------ceeeee-cCCC--ce
Q 021852 25 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK--------GKIEEI-ELPV--TK 90 (306)
Q Consensus 25 ~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~--------~d~~~~-~~~~--~~ 90 (306)
.+|.-||+|. | .++..+++.|. +|+.+|.+ +.++.+++ .++ .+.. ....+. .... ..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRK----NGL----IADFNGEEVVANLPIFSPEEIDHQNEQ 74 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----HCE----EEEETTEEEEECCCEECGGGCCTTSCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHh----CCE----EEEeCCCeeEecceeecchhhcccCCC
Confidence 4789999986 3 44555666665 89999987 55544433 232 1111 011111 1111 26
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|+... .......++..+...++++..++
T Consensus 75 ~d~vi~~v------~~~~~~~v~~~l~~~l~~~~~iv 105 (316)
T 2ew2_A 75 VDLIIALT------KAQQLDAMFKAIQPMITEKTYVL 105 (316)
T ss_dssp CSEEEECS------CHHHHHHHHHHHGGGCCTTCEEE
T ss_pred CCEEEEEe------ccccHHHHHHHHHHhcCCCCEEE
Confidence 89998753 22356777777888888887776
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=82.27 E-value=8.3 Score=35.29 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=56.4
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc-------C-C------CCeEEEEEceeeeecCC
Q 021852 25 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN-------G-F------SNVITVLKGKIEEIELP 87 (306)
Q Consensus 25 ~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~-------~-~------~~~v~~~~~d~~~~~~~ 87 (306)
.+|.-||+|. | .++..+++.|. .|+.+|.+ +.++.+++.+..+ + + .....+ ..+.+.
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~---- 111 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE---- 111 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG----
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH----
Confidence 5799999997 3 45666677776 89999988 6666665533211 1 0 011222 333321
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-..+|+||.... ........++..+...++|+.+++
T Consensus 112 ~~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~ 147 (463)
T 1zcj_A 112 LSTVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLC 147 (463)
T ss_dssp GTTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred HCCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEE
Confidence 145899997542 111234567777778888888776
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=82.14 E-value=12 Score=27.08 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=37.0
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEE
Q 021852 24 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 96 (306)
Q Consensus 24 ~~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~ 96 (306)
+.+|+-+|+|. | .++..+++.|. +|+.+|.+ +.++.+++ ..+ +.++.+|..+.. .....+|+|+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~---~~~----~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASA---EID----ALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HCS----SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHH---hcC----cEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 46789998864 2 22333344554 89999987 54443332 122 345666654321 11256899987
Q ss_pred c
Q 021852 97 E 97 (306)
Q Consensus 97 ~ 97 (306)
.
T Consensus 76 ~ 76 (140)
T 1lss_A 76 V 76 (140)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=82.14 E-value=11 Score=31.44 Aligned_cols=80 Identities=11% Similarity=-0.009 Sum_probs=50.9
Q ss_pred CEEEEEcCCCcHHHHHHHH----cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 25 KVVLDVGAGTGILSLFCAK----AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~----~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
++||-.|+ |.++..+++ .|. +|++++.+ .-...... .+++++.+|+.++. ...+|+|+....
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~~~~d~vi~~a~ 72 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--LDGVTHLLISTA 72 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh--------CCCeEEEecccccc--cCCCCEEEECCC
Confidence 58999995 777666654 454 89999976 43332221 25889999998866 467999998532
Q ss_pred ccccCCcchHHHHHHHHhh
Q 021852 100 GYFLLFENMLNTVLYARDK 118 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~ 118 (306)
...........+++++.+
T Consensus 73 -~~~~~~~~~~~l~~a~~~ 90 (286)
T 3ius_A 73 -PDSGGDPVLAALGDQIAA 90 (286)
T ss_dssp -CBTTBCHHHHHHHHHHHH
T ss_pred -ccccccHHHHHHHHHHHh
Confidence 211223334556666544
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=81.92 E-value=5.9 Score=34.18 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCCCEEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEE-----EE-Ecee-eeecCCCcee
Q 021852 22 FKDKVVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVIT-----VL-KGKI-EEIELPVTKV 91 (306)
Q Consensus 22 ~~~~~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~-----~~-~~d~-~~~~~~~~~~ 91 (306)
....+|.-||+|. +.++..+++.|. .|+.+ .+ +.++..++ .++ ++. +. .... .+.. ....+
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~----~g~--~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEA----TGL--RLETQSFDEQVKVSASSDPS-AVQGA 87 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHH----HCE--EEECSSCEEEECCEEESCGG-GGTTC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHh----CCe--EEEcCCCcEEEeeeeeCCHH-HcCCC
Confidence 4457899999997 355666777775 88888 66 55554443 232 111 00 0001 1111 11468
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+... ....+..++..+...++++..++
T Consensus 88 D~vilav------k~~~~~~~l~~l~~~l~~~~~iv 117 (318)
T 3hwr_A 88 DLVLFCV------KSTDTQSAALAMKPALAKSALVL 117 (318)
T ss_dssp SEEEECC------CGGGHHHHHHHHTTTSCTTCEEE
T ss_pred CEEEEEc------ccccHHHHHHHHHHhcCCCCEEE
Confidence 9988753 22356778888888899887765
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=81.88 E-value=3.4 Score=34.84 Aligned_cols=74 Identities=23% Similarity=0.320 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 87 (306)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+.. +.
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999988763 3555566777 89999976 65555555555544 36788888887653 00
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 107 ~g~iD~lvnnA 117 (276)
T 3r1i_A 107 LGGIDIAVCNA 117 (276)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 13799999864
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=81.82 E-value=4.5 Score=42.08 Aligned_cols=71 Identities=24% Similarity=0.195 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee---------------c
Q 021852 23 KDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI---------------E 85 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------------~ 85 (306)
+..+++|+-||.|.+++-+.++|. ..|.|+|++ ..++..+.+. + ...++.+|+.++ .
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-----p-~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-----P-GTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-----T-TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----C-CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 346899999999999999999986 578999998 5555544432 1 234555554322 1
Q ss_pred CC-CceeeEEEEccc
Q 021852 86 LP-VTKVDIIISEWM 99 (306)
Q Consensus 86 ~~-~~~~D~iv~~~~ 99 (306)
++ .+.+|+|+..+.
T Consensus 924 lp~~~~vDvl~GGpP 938 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPP 938 (1330)
T ss_dssp CCCTTTCSEEEECCC
T ss_pred ccccCccceEEecCC
Confidence 12 246899998654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.77 E-value=6.5 Score=32.81 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=49.9
Q ss_pred HHHHHHHHHHh-cccCCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee
Q 021852 7 RTKSYQNVIYQ-NKFLFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 81 (306)
Q Consensus 7 R~~~~~~ai~~-~~~~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 81 (306)
|...+..++.. ......+++||-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.++..+ .++.++.+|+
T Consensus 13 ~~~~~~~~~~~~~~~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl 89 (272)
T 1yb1_A 13 RENLYFQGHMPKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDC 89 (272)
T ss_dssp ------------CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCT
T ss_pred chhheeccccCCcccccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeC
Confidence 44455555532 2233567899999977652 2344455676 89999977 55555444455444 3688999998
Q ss_pred eeec-----C-----CCceeeEEEEcc
Q 021852 82 EEIE-----L-----PVTKVDIIISEW 98 (306)
Q Consensus 82 ~~~~-----~-----~~~~~D~iv~~~ 98 (306)
.+.. + ..+++|++|.+.
T Consensus 90 ~~~~~v~~~~~~~~~~~g~iD~li~~A 116 (272)
T 1yb1_A 90 SNREDIYSSAKKVKAEIGDVSILVNNA 116 (272)
T ss_dssp TCHHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 6643 0 013689999864
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.65 E-value=5.5 Score=33.17 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 87 (306)
..++++|-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+.+.......++.++.+|+.+.. +.
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999987763 3445556676 89999977 555444444443311236888888886643 00
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 90 ~g~id~lv~nA 100 (267)
T 1iy8_A 90 FGRIDGFFNNA 100 (267)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 13689999874
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=81.33 E-value=6.7 Score=33.16 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=57.0
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc---------CCC--------CeEEEEEceeeee
Q 021852 25 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN---------GFS--------NVITVLKGKIEEI 84 (306)
Q Consensus 25 ~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~---------~~~--------~~v~~~~~d~~~~ 84 (306)
++|.-||+|+ | .++..+++.|. +|+.+|.+ +.++.+++.+..+ ++. .+++.. .+..+.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~~~ 82 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS-DDLAQA 82 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE-SCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe-CCHHHH
Confidence 5788899986 2 44566667776 89999988 7766665543211 111 112221 222221
Q ss_pred cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-..+|+|+.... ........++..+...++|+.+++
T Consensus 83 ---~~~aDlVi~av~----~~~~~~~~v~~~l~~~~~~~~il~ 118 (283)
T 4e12_A 83 ---VKDADLVIEAVP----ESLDLKRDIYTKLGELAPAKTIFA 118 (283)
T ss_dssp ---TTTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ---hccCCEEEEecc----CcHHHHHHHHHHHHhhCCCCcEEE
Confidence 145899997532 122355677778888899988776
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=81.25 E-value=2.6 Score=35.04 Aligned_cols=74 Identities=24% Similarity=0.356 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 87 (306)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+.. +.
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999887763 3455566777 89999987 66665555554333 46889999987643 00
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 81 ~g~id~lv~nA 91 (257)
T 3imf_A 81 FGRIDILINNA 91 (257)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 13789999864
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.37 E-value=4 Score=34.54 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-c--------C--
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-E--------L-- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~-- 86 (306)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+.+...+- .++.++.+|+.+. . +
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHH
Confidence 457899998887763 3445555677 89999977 555555555544432 4689999998775 2 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..+++|++|.+.
T Consensus 88 ~~g~iD~lv~nA 99 (311)
T 3o26_A 88 HFGKLDILVNNA 99 (311)
T ss_dssp HHSSCCEEEECC
T ss_pred hCCCCCEEEECC
Confidence 014799999874
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=80.32 E-value=12 Score=36.12 Aligned_cols=119 Identities=11% Similarity=0.170 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcccCC---CCCEEEEEcCCCcHHHHHHHHc-C--------CCEEEEEechHHHHHHHHHHHHcC----
Q 021852 6 VRTKSYQNVIYQNKFLF---KDKVVLDVGAGTGILSLFCAKA-G--------AAHVYAVECSQMANMAKQIVEANG---- 69 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~---~~~~VLDlG~G~G~l~~~~a~~-g--------~~~v~~iD~s~~~~~a~~~~~~~~---- 69 (306)
.|+..+.+.+.+..... +...|+-||||.=.....+... + ..+++=+|..++++.=++.++..+
T Consensus 87 ~R~~~~d~~v~~fl~~~~~~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~ 166 (695)
T 2zwa_A 87 LRLFAIRSRLNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSK 166 (695)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHH
Confidence 46666766666543333 4578999999987777777543 2 124555555555544444444221
Q ss_pred ---------C----------CCeEEEEEceeeeec----------C-CCceeeEEEEcccccccCCcchHHHHHHHHhhc
Q 021852 70 ---------F----------SNVITVLKGKIEEIE----------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKW 119 (306)
Q Consensus 70 ---------~----------~~~v~~~~~d~~~~~----------~-~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~ 119 (306)
+ +++..++..|+++.. + .....-++++|.+..++ .+.....+++.+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl-~~~~~~~ll~~~~~~ 245 (695)
T 2zwa_A 167 IIGLSEDKDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYM-KPERSDSIIEATSKM 245 (695)
T ss_dssp HTTCCSSCSSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGS-CHHHHHHHHHHHHTS
T ss_pred hhccccccccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEc-CHHHHHHHHHHHhhC
Confidence 0 036788989987642 1 34566788899776665 556677888888765
Q ss_pred ccCCeEEE
Q 021852 120 LVDDGIVL 127 (306)
Q Consensus 120 L~p~G~~i 127 (306)
++|.++
T Consensus 246 --~~~~~~ 251 (695)
T 2zwa_A 246 --ENSHFI 251 (695)
T ss_dssp --SSEEEE
T ss_pred --CCceEE
Confidence 566554
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=80.13 E-value=8.6 Score=34.76 Aligned_cols=76 Identities=21% Similarity=0.189 Sum_probs=48.1
Q ss_pred cCCCCCEEEEEcCCCcHH-H--H--HHHHcCCCEEEEEech-HH------------HHHHHHHHHHcCCCCeEEEEEcee
Q 021852 20 FLFKDKVVLDVGAGTGIL-S--L--FCAKAGAAHVYAVECS-QM------------ANMAKQIVEANGFSNVITVLKGKI 81 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l-~--~--~~a~~g~~~v~~iD~s-~~------------~~~a~~~~~~~~~~~~v~~~~~d~ 81 (306)
....++++|-.|+++|+= + + .+++.|+ +|+.++.+ +. .+.+++.++..+. ++..+.+|+
T Consensus 56 ~~~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv 132 (418)
T 4eue_A 56 GFRGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGL--VAKNFIEDA 132 (418)
T ss_dssp CCCCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTC--CEEEEESCT
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecCcchhhhcccccccchHHHHHHHHHHcCC--cEEEEEeeC
Confidence 346789999999998743 2 2 2222365 88888764 21 2344444555553 588888998
Q ss_pred eeec----------CCCceeeEEEEcc
Q 021852 82 EEIE----------LPVTKVDIIISEW 98 (306)
Q Consensus 82 ~~~~----------~~~~~~D~iv~~~ 98 (306)
.+.. -..++.|++|.+.
T Consensus 133 td~~~v~~~v~~i~~~~G~IDiLVnNA 159 (418)
T 4eue_A 133 FSNETKDKVIKYIKDEFGKIDLFVYSL 159 (418)
T ss_dssp TCHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 7643 1236899999863
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=80.02 E-value=7.1 Score=32.08 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 87 (306)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 357899999987652 3445555676 89999977 55555555555444 36888888886643 00
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 82 ~g~id~lv~nA 92 (247)
T 2jah_A 82 LGGLDILVNNA 92 (247)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 13789999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 306 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-113 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 9e-99 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 3e-94 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-09 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 3e-09 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-08 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 2e-07 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 4e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 5e-05 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 1e-04 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 1e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-04 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-04 | |
| d2dula1 | 375 | c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR | 3e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 3e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 4e-04 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.001 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.001 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 0.001 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.003 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.004 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.004 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 327 bits (840), Expect = e-113
Identities = 179/306 (58%), Positives = 232/306 (75%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++
Sbjct: 11 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 70
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 71 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL 130
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+
Sbjct: 131 APDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQL 190
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240
VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P
Sbjct: 191 VTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 250
Query: 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRI 300
+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 251 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCS 310
Query: 301 QYYKMR 306
Y+MR
Sbjct: 311 TDYRMR 316
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 291 bits (746), Expect = 9e-99
Identities = 153/312 (49%), Positives = 211/312 (67%), Gaps = 7/312 (2%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
ML+D VRT SY+N I QNK LFKDK+VLDVG GTGILS+F AK GA HV V+ S + M
Sbjct: 16 MLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEM 75
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
AK++VE NGFS+ IT+L+GK+E++ LP KVDIIISEWMGYFLL+E+M++TVLYARD +L
Sbjct: 76 AKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYL 135
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
V+ G++ PDK S++L +ED++YKD+K+ +W +VYGFD S + EP+VDTV++N +
Sbjct: 136 VEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNV 195
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF--TKCHKLMGFST 238
T L D++ + D +F + FKL A+R D I+ +V +FD+ F K + + FST
Sbjct: 196 NTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFST 255
Query: 239 GPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ-----GR 293
GP + THWKQT+ Y D L G+ I G L +PN+KN RD++I + Y + G
Sbjct: 256 GPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGN 315
Query: 294 HSAISRIQYYKM 305
+ Y M
Sbjct: 316 SRSRKNEGSYLM 327
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 279 bits (715), Expect = 3e-94
Identities = 140/294 (47%), Positives = 192/294 (65%), Gaps = 1/294 (0%)
Query: 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 60
MLKD +RT+SY++ IYQN +FKDKVVLDVG GTGILS+F AKAGA V V+ S++
Sbjct: 13 MLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ 72
Query: 61 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 120
A I+ N + IT++KGKIEE+ LPV KVD+IISEWMGYFLLFE+ML++VLYA++K+L
Sbjct: 73 AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYL 132
Query: 121 VDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQI 180
G V PD ++ L A+ D D+I FW++VYGF MSC+KK + E +V+ +D +
Sbjct: 133 AKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTL 192
Query: 181 VTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTK-CHKLMGFSTG 239
++ +K +D D F++ F L R A+ YFD+ F K CH + FSTG
Sbjct: 193 ISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTG 252
Query: 240 PKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR 293
P+S THWKQTV LE ++ GEA+ G +TV NKK+PR + + L + +
Sbjct: 253 PQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNNSTQ 306
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 55.3 bits (132), Expect = 1e-09
Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 7/146 (4%)
Query: 18 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 76
+ + VLD+G G G L +AG Y V+ ++ N A+ +
Sbjct: 19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFF 78
Query: 77 LKGKI--EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI---VLPDKA 131
++L I Y L+ + L G +P +
Sbjct: 79 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 138
Query: 132 SLYLTAIEDAEYKDDKIEFWNNVYGF 157
+ L + +D +
Sbjct: 139 VI-LERYKQGRMSNDFYKIELEKMED 163
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 54.4 bits (130), Expect = 3e-09
Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 16/149 (10%)
Query: 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 77
K D++V+D+ AG G LSL A G A V A+E + + N + ++
Sbjct: 103 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 162
Query: 78 KGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTA 137
+ D I+ MGY + + L D I+ + T
Sbjct: 163 NMDNRDFP-GENIADRIL---MGYVVRTHEFIPKAL----SIAKDGAIIH-----YHNTV 209
Query: 138 IEDAEYKD--DKIEFWNNVYGFDMSCIKK 164
E ++ + + YG+D+ + +
Sbjct: 210 PEKLMPREPFETFKRITKEYGYDVEKLNE 238
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 51.4 bits (122), Expect = 2e-08
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 1/129 (0%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80
K+ V +DVG GTG ++L A + + + ++ +G + +T+++G
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90
Query: 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 140
E + +DI + G L + ++ I+L + + + D
Sbjct: 91 APEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILL-ETKFEAMECLRD 149
Query: 141 AEYKDDKIE 149
+ + E
Sbjct: 150 LGFDVNITE 158
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 47.6 bits (112), Expect = 2e-07
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL--KG 79
F VLD+ AG+G L++ G + VE ++ A Q + L
Sbjct: 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKME 72
Query: 80 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL--------PDKA 131
I+ + D++ + + + A L + +V+ K
Sbjct: 73 AERAIDCLTGRFDLVFLDPPYAKETIVATIEAL--AAKNLLSEQVMVVCETDKTVLLPKE 130
Query: 132 SLYLTAIEDAEYKDDKIEFWNN 153
L ++ Y K+ + N
Sbjct: 131 IATLGIWKEKIYGISKVTVYVN 152
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 41.9 bits (97), Expect = 4e-05
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 4/101 (3%)
Query: 27 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 86
VLD+GAG G +L + V+ ++ + +G E +
Sbjct: 20 VLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78
Query: 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
P DII Y + + + + L DG L
Sbjct: 79 PDDSFDII---TCRYAAHHFSDVRKAVREVARVLKQDGRFL 116
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 41.6 bits (96), Expect = 5e-05
Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 9/166 (5%)
Query: 1 MLKDVVRTKSYQNVIYQ--NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA 58
+++ V K + + I + + LD+ GTG L+ +M
Sbjct: 13 LIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEML 72
Query: 59 NMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDK 118
+ A+ + G + I + + I +++ + L A
Sbjct: 73 SEAENKFRSQGLKPRL--ACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSN 130
Query: 119 WLVDDGIVL-----PDKASLYLTAIEDAEYKDDKIEFWNNVYGFDM 159
L + G+ + K S L + D+ +W N + D+
Sbjct: 131 HLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDL 176
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.1 bits (93), Expect = 1e-04
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSN 72
+ V+D G G GIL+ GA V A + A AK+ F
Sbjct: 47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV 98
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 14/68 (20%), Positives = 22/68 (32%)
Query: 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVE 66
RT Y+ + VLDV GTG+ S+ + G + +M A +
Sbjct: 40 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW 99
Query: 67 ANGFSNVI 74
Sbjct: 100 NRRKEPAF 107
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80
+ +LD+G+G+G + A+ ++ S + + +
Sbjct: 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN 90
Query: 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
+ K D+ +G + + L GI+L
Sbjct: 91 DAAGYVANEKCDVAAC--VGATWIAGGFAGAEELLA-QSLKPGGIML 134
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 78
L K +D+G+G G + A G A + E +++ E + ++
Sbjct: 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273
Query: 79 GKIEEIELPV--TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLT 136
E L + + ++ +N L+ D + I+ K +
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQCDVIL---VNNFLFDEDLNKKVEKILQTAKVGCKII 330
Query: 137 AIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVD 173
+++ +I F+N F+ +++ + E V
Sbjct: 331 SLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVS 367
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 39.6 bits (92), Expect = 3e-04
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMA-NMAKQIVEANGFSNV 73
+ K+VLD + TGI + A A V+ + S+ A + K+ V N +
Sbjct: 43 ILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL 97
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 38.7 bits (89), Expect = 3e-04
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80
F+ +L++G+ G + + + VE S+ A Q +G +
Sbjct: 18 FFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKDGITY-------I 69
Query: 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG---IVLPDKASLY 134
E ++ + + D WL + G +V P+ ++
Sbjct: 70 HSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS 126
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 38.9 bits (89), Expect = 4e-04
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 56
L ++ VLDV G G ++ A V A + ++
Sbjct: 13 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTE 47
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 0.001
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVL 77
+ VL+ G+G+G +SLF +KA V + E + ++AK+ + S ++ +
Sbjct: 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155
Query: 78 KGKIEEIELPVTKVD 92
+ + ++ +
Sbjct: 156 EEWPDNVDFIHKDIS 170
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.3 bits (86), Expect = 0.001
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 21 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 77
L +L+VG G+G +S + A G + VE A + +
Sbjct: 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 142
Query: 78 KGKI 81
+ I
Sbjct: 143 RSDI 146
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.0 bits (84), Expect = 0.001
Identities = 18/141 (12%), Positives = 43/141 (30%), Gaps = 3/141 (2%)
Query: 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVI 74
I++ + + VLD+ GTGI +L A+ V ++ + + +
Sbjct: 33 IFKEDAKREVRRVLDLACGTGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIE 91
Query: 75 TVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 134
+ + D + + E L + + L G+ + D +
Sbjct: 92 FL--QGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWF 149
Query: 135 LTAIEDAEYKDDKIEFWNNVY 155
+ +++ V
Sbjct: 150 YGGRDGPVVWNEQKGEEKLVI 170
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 36.0 bits (82), Expect = 0.003
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 7/153 (4%)
Query: 3 KDVVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 61
+D+ Y + + + + K ++D G G G L L +
Sbjct: 6 RDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL 65
Query: 62 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 121
+ E + K DI I FLL T+L +
Sbjct: 66 AEARELFRLLPYDSEFLEGDATEIELNDKYDIAIC---HAFLLHMTTPETMLQKMIHSVK 122
Query: 122 DDGIVL---PDKASLYLTAIEDAEYKDDKIEFW 151
G ++ P S + + D E + + I+
Sbjct: 123 KGGKIICFEPHWISNMASYLLDGEKQSEFIQLG 155
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 35.5 bits (81), Expect = 0.004
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 18 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVE-CSQMANMAKQIVEANGFSNVIT 75
L D+ VL +GA +G A +YAVE ++ ++V +
Sbjct: 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLL 110
Query: 76 VLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
K + V KVD+I + + +N + + + +L + G V+
Sbjct: 111 FDASKPWKYSGIVEKVDLIYQD-----IAQKNQIEILKANAEFFLKEKGEVV 157
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 35.5 bits (81), Expect = 0.004
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 23 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGK 80
+D +L +GA G A VYA+E ++ I K
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK 133
Query: 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127
+E V KVD + + N ++ +L G +
Sbjct: 134 PQEYANIVEKVD-----VIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 306 | |||
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.79 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.76 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.76 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.76 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.75 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.74 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.72 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.71 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.7 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.68 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.67 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.67 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.66 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.66 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.66 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.64 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.62 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.61 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.61 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.6 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.6 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.6 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.57 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.57 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.56 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.55 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.54 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.54 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.53 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.53 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.53 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.52 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.5 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.49 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.49 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.48 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.47 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.46 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.46 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.46 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.44 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.44 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.44 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.43 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.43 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.42 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.42 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.41 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.41 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.41 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.39 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.36 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.36 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.36 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.34 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.34 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.34 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.3 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.28 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.26 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.24 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.21 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.17 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.17 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.16 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.05 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.97 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.96 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.86 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.84 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.78 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.78 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.73 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.69 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.66 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.65 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.62 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.6 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.6 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.59 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.58 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.57 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.57 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.51 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.45 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.43 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.42 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.4 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.33 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.32 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.16 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.07 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.0 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.98 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.85 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.76 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.59 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.55 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.53 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.45 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.43 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.43 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.31 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.3 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.25 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.2 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.18 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.91 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.88 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.63 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.62 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.6 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.44 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.34 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.32 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.19 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.95 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.59 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.55 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.44 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.36 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.19 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.12 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.1 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.97 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.89 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.76 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.67 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.43 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.33 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.28 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.27 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.26 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 94.07 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.07 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.89 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 93.85 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.56 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.37 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.37 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 93.14 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.94 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.9 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.67 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 92.59 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 92.35 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.24 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 92.15 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 92.11 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.99 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.93 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 91.67 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 91.25 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 91.2 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 91.14 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 91.07 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.73 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 90.71 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 90.52 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 89.88 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 89.62 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 89.27 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 88.9 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 88.59 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 88.48 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 88.08 | |
| d1sdwa2 | 158 | Peptidylglycine alpha-hydroxylating monooxygenase, | 87.96 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.91 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 87.51 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 87.31 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 87.04 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 86.93 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 86.7 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 86.36 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 85.74 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 85.43 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 85.12 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 84.47 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 84.47 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 83.74 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.55 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 83.29 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 82.99 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 82.86 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 82.06 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 81.65 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 81.26 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 81.25 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 81.22 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 80.4 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 80.14 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.5e-64 Score=448.34 Aligned_cols=306 Identities=58% Similarity=1.001 Sum_probs=292.6
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
||+|..|+++|++||.++..+.+|++|||||||+|.++++||++|+++|+|+|.|+++..++++++.|++.+++++++++
T Consensus 11 Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~ 90 (316)
T d1oria_ 11 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGK 90 (316)
T ss_dssp HHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEecc
Confidence 89999999999999998877889999999999999999999999999999999997778888899999999999999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhccccccCCCCch
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 160 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 160 (306)
+.+++++.+++|+|+++++++++.++..++.+++++.++|+|||.++|+.+++|++++++..++.....+|.+++|+|++
T Consensus 91 ~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~~~~~~~~~~~~~~~~g~d~~ 170 (316)
T d1oria_ 91 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMS 170 (316)
T ss_dssp TTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHTTTTTCBTTBCCH
T ss_pred HHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecCHHHHhhhcccccccccccch
Confidence 99998888899999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred hhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceEEEEEEEEEEEecCCCceeEEecCC
Q 021852 161 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGP 240 (306)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~lst~p 240 (306)
.+......+|.+...++..++++|+.++++||.+...+++.++..+++++.++|++|||++||+++|+++++++.|||+|
T Consensus 171 ~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~~l~~~~~~v~lST~P 250 (316)
T d1oria_ 171 CIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSP 250 (316)
T ss_dssp HHHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEEEEEEEEECTTSSSCCEEECST
T ss_pred hhhhhhccccEEEEecCceEeeCCEEeEEEcCCCCcccCccEEEEEEEeecCCceEEEEEEEEEEEeeCCCCCeEEECCC
Confidence 99999989999999999999999999999999998888888889999999999999999999999999876789999999
Q ss_pred CCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEcceeeeeeceeEEEeC
Q 021852 241 KSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 306 (306)
Q Consensus 241 ~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
..+.+||+|++|||++|+.|++||.|.++++++++..++|+++++++|+.+|.+.+.+.+..|+||
T Consensus 251 ~~~~thW~Q~v~~l~~p~~v~~g~~i~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~~ 316 (316)
T d1oria_ 251 ESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 316 (316)
T ss_dssp TSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSSTTCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CcCCCceecEEEEcCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEEEecCeeeccccceeeecC
Confidence 988999999999999999999999999999999999999999999999999999999999999998
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.7e-61 Score=431.04 Aligned_cols=306 Identities=50% Similarity=0.876 Sum_probs=286.1
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
||+|..|+++|++||.++....+|++|||||||+|.+++++|++|+++|+|+|.|+++..|+++++.+++.+++++++++
T Consensus 16 ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~ 95 (328)
T d1g6q1_ 16 MLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGK 95 (328)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEee
Confidence 89999999999999998777889999999999999999999999999999999998889999999999999999999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhccccccCCCCch
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 160 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 160 (306)
+.++.++.+++|+|+++++++++.++..++.++.++.++|||||+++|+.+++|++++++..++.+...+|.+++|||++
T Consensus 96 ~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~l~~~~~~~~~~~~G~d~~ 175 (328)
T d1g6q1_ 96 LEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYS 175 (328)
T ss_dssp TTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHHHHTTCBTTBCCT
T ss_pred hhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHHHHHHhccccccccccccc
Confidence 99998888999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred hhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceEEEEEEEEEEEecCC--CceeEEec
Q 021852 161 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKC--HKLMGFST 238 (306)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~--~~~~~lst 238 (306)
.+......+|.+..+++.++++.|..+..+|+...+.+++.+...++++++++|++|||++||+++|+.. ..++.+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~~l~~~~~~~~i~lST 255 (328)
T d1g6q1_ 176 PFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFST 255 (328)
T ss_dssp THHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEEECCCCTTSCCCEEEC
T ss_pred hhhhhhccCcEEEEecCceeecCceeEEEecccccchhhcceeeeEEEEecCCcEEEEEEEEEEEEccCCCCCCceEEeC
Confidence 9999999999999999999999999999999999988888889999999999999999999999999873 23689999
Q ss_pred CCCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEEEc-----ceeeeeeceeEEEeC
Q 021852 239 GPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ-----GRHSAISRIQYYKMR 306 (306)
Q Consensus 239 ~p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 306 (306)
+|.++.+||+|++++|++|+.|++||+|++++++++++.+.|.++++++|+.. |....-.++++|.|.
T Consensus 256 ~P~~~~thW~Q~v~~l~~pi~v~~gd~i~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (328)
T d1g6q1_ 256 GPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLMH 328 (328)
T ss_dssp STTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEECCSSTHHHHCEEEEEEEEEC
T ss_pred CCCCCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEecCCCCcccceeccceEecC
Confidence 99999999999999999999999999999999999999999998888888753 444445889999883
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-59 Score=415.13 Aligned_cols=289 Identities=48% Similarity=0.849 Sum_probs=270.5
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEce
Q 021852 1 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 80 (306)
Q Consensus 1 Ml~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d 80 (306)
||+|..|+++|.+||.++....++++|||||||+|.+++++|++|+++|+|+|.|+.+..+++.++++++.+++++++++
T Consensus 13 ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~ 92 (311)
T d2fyta1 13 MLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK 92 (311)
T ss_dssp HHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEee
Confidence 89999999999999999888899999999999999999999999999999999995455677788889988999999999
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccccchhccccccCCCCch
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 160 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 160 (306)
++++.++.++||+|+++++++++.++..++.+++++.++|+|||+++|+.+++|++++++..++.....+|.+++|++++
T Consensus 93 ~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~~~~~~~~~~~~~~~~G~d~~ 172 (311)
T d2fyta1 93 IEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMS 172 (311)
T ss_dssp TTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHTGGGGCBTTBCCG
T ss_pred HHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecCHHHHHhhhcccccccccccc
Confidence 99998888899999999999999999999999999999999999999999999999999988888888899999999999
Q ss_pred hhhhhhcCCceEEeeCCCCccCCCeEEEEEEcCCCCCCCCceeeeEEEEEeecceEEEEEEEEEEEecC-CCceeEEecC
Q 021852 161 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTK-CHKLMGFSTG 239 (306)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~-~~~~~~lst~ 239 (306)
.+.+....+|.+...++..++++|+.++++||.+...+++.++..++++++++|++|||++||+++|+. .++++++||+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~Wfd~~f~~~~~~~~~lST~ 252 (311)
T d2fyta1 173 CMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTG 252 (311)
T ss_dssp GGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEEEECTTCSSCEEEECS
T ss_pred chhhccccccEEEecChhheecCCEeEEEeccCcCccccccEEEEEEeeecCCcceEEEEEEEEEEEECCCCCceEEeCC
Confidence 999998889999999999999999999999999988888888899999999999999999999999875 3458999999
Q ss_pred CCCCCCCceeEEEecCCeeeccCCCEEEEEEEEeeCCCCCeeeEEEEEEE
Q 021852 240 PKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYS 289 (306)
Q Consensus 240 p~~~~~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 289 (306)
|..+.+||+|+++||++|+.|++||+|++++++.+++.+.|+++++++++
T Consensus 253 P~~~~thW~q~~~~l~~p~~v~~gd~l~~~~~~~~~~~~~r~~~~~~~~~ 302 (311)
T d2fyta1 253 PQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLN 302 (311)
T ss_dssp TTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEET
T ss_pred CCcCCCccccEEEEeCCceEeCCCCEEEEEEEEEECCCCCEEEEEEEEEe
Confidence 99889999999999999999999999999999999999999998877543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=4e-19 Score=149.62 Aligned_cols=112 Identities=20% Similarity=0.299 Sum_probs=97.8
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.+.+...+.+|.+|||||||+|.++..+++.++ +|+|+|+| +|++.|++++..++++ ++.++++|+++++++++
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~ 81 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDD 81 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTT
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccc-ccccccccccccccccc
Confidence 345566667899999999999999999999999864 99999999 9999999999999884 69999999999998889
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|+|..+.+ +..+...+++++.++|||||+++
T Consensus 82 ~fD~v~~~~~l~---~~~d~~~~l~~~~r~LkpgG~~~ 116 (234)
T d1xxla_ 82 SFDIITCRYAAH---HFSDVRKAVREVARVLKQDGRFL 116 (234)
T ss_dssp CEEEEEEESCGG---GCSCHHHHHHHHHHHEEEEEEEE
T ss_pred ccceeeeeceee---cccCHHHHHHHHHHeeCCCcEEE
Confidence 999999965433 33568899999999999999987
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.1e-18 Score=146.15 Aligned_cols=115 Identities=16% Similarity=0.123 Sum_probs=97.9
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
...+++.....+.+|++|||||||+|.++..+++....+|+|+|+| .|++.|+++++.++++++++++.+|++++. ++
T Consensus 20 ~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-~~ 98 (245)
T d1nkva_ 20 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-AN 98 (245)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CS
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-cc
Confidence 3445566667889999999999999999999888533599999999 899999999999999989999999999874 56
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
++||+|+|..+.+++ .++..++.++.++|||||+++.
T Consensus 99 ~~fD~v~~~~~~~~~---~d~~~~l~~~~r~LkPGG~l~i 135 (245)
T d1nkva_ 99 EKCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLI 135 (245)
T ss_dssp SCEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEE
T ss_pred CceeEEEEEehhhcc---CCHHHHHHHHHHHcCcCcEEEE
Confidence 899999996554433 4678899999999999999984
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.76 E-value=1.9e-18 Score=144.78 Aligned_cols=104 Identities=19% Similarity=0.272 Sum_probs=91.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
..+.++.+|||||||+|.++..+++.|+ +|+|+|+| +|++.|++++...+. ++++++++|+++++++.++||+|++.
T Consensus 11 ~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~fD~v~~~ 88 (231)
T d1vl5a_ 11 AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFHIVTCR 88 (231)
T ss_dssp HTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEEEEEEE
T ss_pred cCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccc-cccccccccccccccccccccccccc
Confidence 5678899999999999999999999875 89999999 999999999999888 46999999999998888999999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+++ .+...++.++.++|||||+++
T Consensus 89 ~~l~~~---~d~~~~l~~~~r~LkpgG~l~ 115 (231)
T d1vl5a_ 89 IAAHHF---PNPASFVSEAYRVLKKGGQLL 115 (231)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred cccccc---CCHHHHHHHHHHhcCCCcEEE
Confidence 543433 567889999999999999887
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.76 E-value=2.7e-18 Score=148.49 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=97.8
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
+.+.+.....+.++.+|||||||+|.++..+++....+|+|+|+| .|++.|+++....++.++++++.+|+.+++++++
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~ 134 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDN 134 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccccccc
Confidence 344455556788999999999999999999988533499999999 8999999999999999899999999999998889
Q ss_pred eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 90 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 90 ~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+||+|++..+.+++ .+...++.++.++|||||+++
T Consensus 135 sfD~V~~~~~l~h~---~d~~~~l~~~~~~LkpgG~l~ 169 (282)
T d2o57a1 135 SYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMA 169 (282)
T ss_dssp CEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEE
T ss_pred ccchhhccchhhhc---cCHHHHHHHHHHhcCCCcEEE
Confidence 99999996543333 567889999999999999987
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=8.7e-18 Score=142.50 Aligned_cols=110 Identities=22% Similarity=0.329 Sum_probs=91.9
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.+.....++++|||+|||+|.++..+++.|+ +|+|+|+| +|++.|++++..+++ +++++++|+++++++ ++||+
T Consensus 33 ~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~-~~fD~ 108 (251)
T d1wzna1 33 IFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDA 108 (251)
T ss_dssp HHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCEEE
T ss_pred HHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhcccc-cccch
Confidence 33334566778999999999999999999987 89999999 899999999988876 699999999999877 79999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
|++...............+++.+.++|||||+++.
T Consensus 109 I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 99853222223445677899999999999999984
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=1.2e-17 Score=139.08 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=93.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
....+.+.+ .+.++.+|||||||+|.++..+++.|+ +|+|+|+| +|++.|++++...+. ++.++.+|+.+++++
T Consensus 25 ~~~~~~~~~--~l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~ 99 (226)
T d1ve3a1 25 ETLEPLLMK--YMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFE 99 (226)
T ss_dssp HHHHHHHHH--SCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSC
T ss_pred HHHHHHHHH--hcCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc--ccccccccccccccc
Confidence 334444443 356788999999999999999999865 89999999 999999999887775 478899999999888
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++||+|++..+.+++ ...++..+++.+.++|||||.++
T Consensus 100 ~~~fD~I~~~~~l~~~-~~~d~~~~l~~i~~~LkpgG~li 138 (226)
T d1ve3a1 100 DKTFDYVIFIDSIVHF-EPLELNQVFKEVRRVLKPSGKFI 138 (226)
T ss_dssp TTCEEEEEEESCGGGC-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CcCceEEEEecchhhC-ChhHHHHHHHHHHHHcCcCcEEE
Confidence 8999999997654444 23467789999999999999987
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.72 E-value=1.6e-17 Score=134.81 Aligned_cols=109 Identities=22% Similarity=0.299 Sum_probs=93.5
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
+..+.......++.+|||+|||+|.+++.+|+. +.+|+|+|.+ ++++.|+++++++++.++++++++|+.+...+...
T Consensus 22 r~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 344444566889999999999999999999986 4599999999 99999999999999988999999999888767789
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||.|++... ......+++.+.++|||||+++
T Consensus 101 ~D~v~~~~~------~~~~~~~~~~~~~~LkpgG~lv 131 (186)
T d1l3ia_ 101 IDIAVVGGS------GGELQEILRIIKDKLKPGGRII 131 (186)
T ss_dssp EEEEEESCC------TTCHHHHHHHHHHTEEEEEEEE
T ss_pred cCEEEEeCc------cccchHHHHHHHHHhCcCCEEE
Confidence 999998642 1345678888999999999986
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.71 E-value=4e-17 Score=138.77 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=98.1
Q ss_pred HHHHHHHHHHh---cccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee
Q 021852 7 RTKSYQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 82 (306)
Q Consensus 7 R~~~~~~ai~~---~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 82 (306)
..+.|.+++.. .....++++|||||||+|..+..+++.|.++|+|+|+| +|++.|++++...+...++.++.+|+.
T Consensus 5 ~~r~~~N~vK~~lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~ 84 (252)
T d1ri5a_ 5 NIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY 84 (252)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT
T ss_pred HHHHHHHHHHHHHHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchh
Confidence 34445554432 23567899999999999999999999888899999999 899999999888887778999999996
Q ss_pred eecC-CCceeeEEEEcccccc-cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIEL-PVTKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~~-~~~~~D~iv~~~~~~~-~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+ ..++||+|+|....++ +..+..+..++..+.++|+|||.++
T Consensus 85 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i 131 (252)
T d1ri5a_ 85 GRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 131 (252)
T ss_dssp TSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred hhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEE
Confidence 6554 3578999999754444 4456778899999999999999987
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.70 E-value=4.3e-17 Score=137.98 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc--
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-- 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~-- 97 (306)
..++++|||+|||+|.++..+++.|. +|+|+|.| +|++.|++++..+++ +++++++|+.++.++ ++||+|+|-
T Consensus 35 ~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~i~~~~~ 110 (246)
T d1y8ca_ 35 NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLD 110 (246)
T ss_dssp TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTT
T ss_pred CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc--cceeeccchhhhccc-ccccccceeee
Confidence 35568999999999999999999876 89999999 999999999988886 589999999998765 799999983
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+ +++.....+..+++.+.++|+|||.++
T Consensus 111 ~~-~~~~~~~~~~~~l~~~~~~LkpgG~~i 139 (246)
T d1y8ca_ 111 ST-NYIIDSDDLKKYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp GG-GGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ee-eccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 33 334456788889999999999999987
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=4.1e-16 Score=127.59 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=88.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||||||+|..+..+++.|. +|+|+|+| +|++.+++.++..+++ ++++...|+.++..+ ++||+|++..+
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~I~~~~~ 104 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFD-GEYDFILSTVV 104 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCC-CCEEEEEEESC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc-chhhhheeccccccc-ccccEEEEeee
Confidence 33456999999999999999999976 89999999 8999999999999985 699999999888754 89999999766
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++ .......++.++.++|+|||+++
T Consensus 105 ~~~~-~~~~~~~~l~~~~~~L~pgG~~~ 131 (198)
T d2i6ga1 105 MMFL-EAQTIPGLIANMQRCTKPGGYNL 131 (198)
T ss_dssp GGGS-CTTHHHHHHHHHHHTEEEEEEEE
T ss_pred eecC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 5554 44567889999999999999987
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.67 E-value=2.6e-16 Score=128.38 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=91.2
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeeeecCCCceee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D 92 (306)
+.+.....++.+|||+|||+|.+++.+++.+ .+|+++|+| .+++.|+++++.+++.+ +++++.+|+.+ .+++++||
T Consensus 44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD 121 (194)
T d1dusa_ 44 LVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYN 121 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEE
T ss_pred HHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCce
Confidence 4444567789999999999999999999864 599999999 89999999999999874 69999999876 34668999
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++++.+. .....+.+++.+.++|+|||.++
T Consensus 122 ~Ii~~~p~~~--~~~~~~~~l~~~~~~LkpgG~l~ 154 (194)
T d1dusa_ 122 KIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIW 154 (194)
T ss_dssp EEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcccEEe--cchhhhhHHHHHHHhcCcCcEEE
Confidence 9999876432 33456788999999999999986
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.4e-17 Score=134.11 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=89.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
...++.+|||||||+|.++..+++.+..+|+|+|+| +|++.|++++...+. .+++++++|+++++++.++||+|++..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccccccccccccccc
Confidence 345678999999999999998877667799999999 999999999887776 468999999999987779999999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+++ .......++..+.++|+|||.++
T Consensus 136 ~l~h~-~~~~~~~~l~~i~~~Lk~~G~~~ 163 (222)
T d2ex4a1 136 VIGHL-TDQHLAEFLRRCKGSLRPNGIIV 163 (222)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccc-hhhhhhhHHHHHHHhcCCcceEE
Confidence 55554 33445679999999999999987
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=1.8e-16 Score=134.19 Aligned_cols=107 Identities=22% Similarity=0.368 Sum_probs=88.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
+.-.+++.+ ...+|++|||+|||+|.+++.+++.|+ +|+|+|+| .+++.|+++++.|++. ++++++++.+. ++
T Consensus 108 ~l~l~~l~~--~~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~-~~ 181 (254)
T d2nxca1 108 RLALKALAR--HLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LP 181 (254)
T ss_dssp HHHHHHHHH--HCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GG
T ss_pred hHHHHHHHh--hcCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccc-cc
Confidence 344555653 367899999999999999999999876 89999999 8999999999999984 57888888764 45
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++||+|+++.. ...+..++..+.+.|||||+++
T Consensus 182 ~~~fD~V~ani~------~~~l~~l~~~~~~~LkpGG~li 215 (254)
T d2nxca1 182 FGPFDLLVANLY------AELHAALAPRYREALVPGGRAL 215 (254)
T ss_dssp GCCEEEEEEECC------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccchhhhccc------cccHHHHHHHHHHhcCCCcEEE
Confidence 589999999753 2456778888999999999997
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=4e-16 Score=134.25 Aligned_cols=108 Identities=17% Similarity=0.090 Sum_probs=92.4
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
+.+...+.+|.+|||||||.|.++..+++. |+ +|+|+|+| ++++.|++++++.++..++.+...|..++ + ++||
T Consensus 44 ~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~-~~fD 119 (280)
T d2fk8a1 44 NLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--A-EPVD 119 (280)
T ss_dssp HHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--C-CCCS
T ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--c-cchh
Confidence 444567899999999999999999999885 55 99999999 99999999999999988899988887655 3 7899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.|++-.+..++ ....++.+++.+.++|||||+++
T Consensus 120 ~i~si~~~eh~-~~~~~~~~f~~i~~~LkpgG~~~ 153 (280)
T d2fk8a1 120 RIVSIEAFEHF-GHENYDDFFKRCFNIMPADGRMT 153 (280)
T ss_dssp EEEEESCGGGT-CGGGHHHHHHHHHHHSCTTCEEE
T ss_pred hhhHhhHHHHh-hhhhHHHHHHHHHhccCCCceEE
Confidence 99996664544 44677899999999999999997
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.66 E-value=6.8e-16 Score=128.76 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=88.8
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~---g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
...++.+|||||||+|..+..+++. +..+|+|+|.| +|++.|+++++..+...++.+..+|..+++ .+.+|+|+
T Consensus 36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~ 113 (225)
T d1im8a_ 36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVI 113 (225)
T ss_dssp HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEE
T ss_pred hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeE
Confidence 3578899999999999999999873 34599999999 999999999988887778999988887664 46789999
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+..+.+++ +..+...+++.+.+.|+|||.++
T Consensus 114 ~~~~l~~~-~~~d~~~~l~~i~~~LkpgG~li 144 (225)
T d1im8a_ 114 LNFTLQFL-PPEDRIALLTKIYEGLNPNGVLV 144 (225)
T ss_dssp EESCGGGS-CGGGHHHHHHHHHHHEEEEEEEE
T ss_pred Eeeecccc-ChhhHHHHHHHHHHhCCCCceee
Confidence 87655544 55677899999999999999998
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=2.5e-16 Score=132.64 Aligned_cols=97 Identities=27% Similarity=0.419 Sum_probs=80.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc-
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE- 97 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~- 97 (306)
...++.+|||+|||+|.++..+++.|+ +|+|+|+| .|++.|+++ +. ..++.++++++++++++||+|++.
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~----~~---~~~~~~~~~~l~~~~~~fD~ii~~~ 110 (246)
T d2avna1 39 YLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREK----GV---KNVVEAKAEDLPFPSGAFEAVLALG 110 (246)
T ss_dssp HCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHH----TC---SCEEECCTTSCCSCTTCEEEEEECS
T ss_pred hcCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccc----cc---cccccccccccccccccccceeeec
Confidence 456788999999999999999999876 89999999 899999875 22 136778999998888999999984
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.++ ..+...+++.+.++|||||.++
T Consensus 111 ~~~~~---~~d~~~~l~~i~r~Lk~gG~~i 137 (246)
T d2avna1 111 DVLSY---VENKDKAFSEIRRVLVPDGLLI 137 (246)
T ss_dssp SHHHH---CSCHHHHHHHHHHHEEEEEEEE
T ss_pred chhhh---hhhHHHHHHHHHhhcCcCcEEE
Confidence 33333 3567789999999999999987
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=2.7e-15 Score=129.05 Aligned_cols=110 Identities=22% Similarity=0.207 Sum_probs=92.9
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCce
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 90 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 90 (306)
+.+.+...+.+|.+|||||||.|.+++.+|+ .|+ +|+|+.+| +.++.|++++++.++.+++++..+|..+++ ++
T Consensus 52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~ 127 (285)
T d1kpga_ 52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EP 127 (285)
T ss_dssp HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CC
T ss_pred HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---cc
Confidence 3344557789999999999999999998877 665 99999999 899999999999999999999999987663 68
Q ss_pred eeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
||.|+|-.+..++ .......+++++.++|+|||+++
T Consensus 128 fD~i~si~~~eh~-~~~~~~~~~~~~~r~LkpgG~~~ 163 (285)
T d1kpga_ 128 VDRIVSIGAFEHF-GHERYDAFFSLAHRLLPADGVML 163 (285)
T ss_dssp CSEEEEESCGGGT-CTTTHHHHHHHHHHHSCTTCEEE
T ss_pred ccceeeehhhhhc-CchhHHHHHHHHHhhcCCCCcEE
Confidence 9999995544443 23456789999999999999997
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.61 E-value=3.8e-16 Score=122.29 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee-cCCCceeeEEEEcc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~iv~~~ 98 (306)
..+|++|||+|||+|.+++.++.+|+++|+++|.+ ++++.++++++.+++.++++++++|+.++ ....++||+|+++|
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 35799999999999999999999999999999999 89999999999999999999999998774 33458999999997
Q ss_pred cccccCCcchHHHHHHHH--hhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYAR--DKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~--~~~L~p~G~~i 127 (306)
+ |. .......++.+ .++|+|+|.++
T Consensus 92 P-y~---~~~~~~~l~~i~~~~~L~~~g~ii 118 (152)
T d2esra1 92 P-YA---KETIVATIEALAAKNLLSEQVMVV 118 (152)
T ss_dssp S-SH---HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred h-hc---cchHHHHHHHHHHCCCcCCCeEEE
Confidence 5 22 23344445444 36899999987
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.61 E-value=4.2e-15 Score=128.20 Aligned_cols=109 Identities=19% Similarity=0.059 Sum_probs=90.6
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
+.+...+.+|.+|||||||.|.+++.+|+ .|+ +|+|+++| ++++.++++++..++.+++++...|... ++++||
T Consensus 53 ~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~---~~~~fD 128 (291)
T d1kpia_ 53 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE---FDEPVD 128 (291)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG---CCCCCS
T ss_pred HHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc---cccccc
Confidence 44456789999999999999999998886 665 99999999 8999999999999999999998887643 348899
Q ss_pred EEEEcccccccCC------cchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.|+|..+..++.. ...++.+++++.++|||||+++
T Consensus 129 ~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~ 169 (291)
T d1kpia_ 129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRML 169 (291)
T ss_dssp EEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEE
T ss_pred eEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceE
Confidence 9999544333322 2457899999999999999997
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.60 E-value=2.1e-15 Score=130.02 Aligned_cols=114 Identities=19% Similarity=0.257 Sum_probs=93.7
Q ss_pred HHHHHHHHHhc-ccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 8 TKSYQNVIYQN-KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 8 ~~~~~~ai~~~-~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
++.|.+.+... ..+.++.+|||+|||+|.++..+++. + ..+|+|+|.| .+++.|+++++..+. +++++.+|+.+
T Consensus 11 n~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~ 88 (281)
T d2gh1a1 11 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATE 88 (281)
T ss_dssp CHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTT
T ss_pred hHHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccc
Confidence 45566666543 35677899999999999999999883 3 3589999999 899999999887775 69999999998
Q ss_pred ecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++ ++||+|++..+.+++ .++..+++++.+.|||||.++
T Consensus 89 ~~~~-~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~li 128 (281)
T d2gh1a1 89 IELN-DKYDIAICHAFLLHM---TTPETMLQKMIHSVKKGGKII 128 (281)
T ss_dssp CCCS-SCEEEEEEESCGGGC---SSHHHHHHHHHHTEEEEEEEE
T ss_pred cccc-CCceEEEEehhhhcC---CCHHHHHHHHHHHcCcCcEEE
Confidence 8765 689999997654443 567789999999999999987
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.60 E-value=6e-16 Score=125.83 Aligned_cols=107 Identities=12% Similarity=-0.014 Sum_probs=84.9
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCC-----------CCeEEEEEceeeeecC
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF-----------SNVITVLKGKIEEIEL 86 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~ 86 (306)
..+.++.+|||+|||+|..+..+|+.|. +|+|+|+| .|++.|+++++..+. ...++++.+|+.++..
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 4578999999999999999999999987 99999999 999999998754432 1234677777766542
Q ss_pred -CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 -PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 -~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...+|+|++..+.+++ ........++.+.++|||||.++
T Consensus 95 ~~~~~~D~i~~~~~l~~l-~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp HHHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEE
T ss_pred ccccceeEEEEEeeeEec-chhhhHHHHHHHHHhcCCCcEEE
Confidence 23689999997655544 44567789999999999999986
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.60 E-value=1.8e-15 Score=128.49 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=87.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....++.+|||+|||+|.++..++..+..+|+++|.| .|++.|++++... ++++++.+++++++++.++||+|++.
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~I~~~ 165 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQ 165 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEE
T ss_pred CCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCccceEEee
Confidence 4455778999999999999988776556699999999 8999998876432 46899999999998877899999998
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++.+++ ...++..++.++.+.|+|||.++
T Consensus 166 ~vl~hl-~d~d~~~~l~~~~~~LkpgG~ii 194 (254)
T d1xtpa_ 166 WTAIYL-TDADFVKFFKHCQQALTPNGYIF 194 (254)
T ss_dssp SCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccc-chhhhHHHHHHHHHhcCCCcEEE
Confidence 776655 33456688999999999999987
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.57 E-value=3.4e-15 Score=124.50 Aligned_cols=97 Identities=20% Similarity=0.317 Sum_probs=80.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
..++.+|||||||+|.++..+++.|. +|+|+|+| ++++.|+++. .++++++++++++..++ ++||+|++..+
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~~-~~fD~I~~~~v 90 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQLP-RRYDNIVLTHV 90 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCCS-SCEEEEEEESC
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccc-----ccccccccccccccccc-cccccccccce
Confidence 45677999999999999999999875 79999999 8999998763 24699999999988765 89999999655
Q ss_pred ccccCCcchHHHHHHHHh-hcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARD-KWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~-~~L~p~G~~i 127 (306)
.+++ .+...++.++. ++|+|||.++
T Consensus 91 leh~---~d~~~~l~~i~~~~Lk~gG~l~ 116 (225)
T d2p7ia1 91 LEHI---DDPVALLKRINDDWLAEGGRLF 116 (225)
T ss_dssp GGGC---SSHHHHHHHHHHTTEEEEEEEE
T ss_pred eEec---CCHHHHHHHHHHHhcCCCceEE
Confidence 4433 56677787776 8999999987
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=5.6e-15 Score=129.69 Aligned_cols=106 Identities=25% Similarity=0.279 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv 95 (306)
..+|++|||+|||+|.+++.+++.|+++|+++|.| .+++.|+++++.||+.++++++++|+.+.. ....+||+|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 56799999999999999999999999999999999 899999999999999888999999987642 2357899999
Q ss_pred EcccccccCCcc-------hHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFEN-------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~-------~~~~~l~~~~~~L~p~G~~i 127 (306)
++++.+.. ... ....++..+.++|+|||.++
T Consensus 223 ~DpP~~~~-~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv 260 (324)
T d2as0a2 223 LDPPAFVQ-HEKDLKAGLRAYFNVNFAGLNLVKDGGILV 260 (324)
T ss_dssp ECCCCSCS-SGGGHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCccccC-CHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 99864432 322 33456777789999999998
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.56 E-value=3.8e-15 Score=125.43 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=85.6
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
|.....+.+|.+|||+|||+|.++..+|++ +..+|+++|.+ ++++.|++++++++..+++++.++|+.+. +++..|
T Consensus 77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~f 155 (250)
T d1yb2a1 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMY 155 (250)
T ss_dssp ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCE
T ss_pred HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccccee
Confidence 344567899999999999999999999984 35699999999 89999999999877667899999999876 456899
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.|+.++. ....++..+.+.|||||+++
T Consensus 156 D~V~ld~p--------~p~~~l~~~~~~LKpGG~lv 183 (250)
T d1yb2a1 156 DAVIADIP--------DPWNHVQKIASMMKPGSVAT 183 (250)
T ss_dssp EEEEECCS--------CGGGSHHHHHHTEEEEEEEE
T ss_pred eeeeecCC--------chHHHHHHHHHhcCCCceEE
Confidence 99998643 22356778889999999987
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=9.7e-15 Score=123.67 Aligned_cols=106 Identities=27% Similarity=0.357 Sum_probs=88.5
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHc--CCCCeEEEEEceeeeecCCC
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEAN--GFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~ 88 (306)
.|.....+.||++|||+|||+|.+++.+|+. | ..+|+++|.+ ++++.|+++++.. +..+++.++++|+.+..+++
T Consensus 87 ~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~ 166 (264)
T d1i9ga_ 87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD 166 (264)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT
T ss_pred HHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccC
Confidence 3445577899999999999999999999994 3 5699999999 9999999998764 44468999999999888888
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++||.|+.++. +...++..+.+.|||||.++
T Consensus 167 ~~fDaV~ldlp--------~P~~~l~~~~~~LkpGG~lv 197 (264)
T d1i9ga_ 167 GSVDRAVLDML--------APWEVLDAVSRLLVAGGVLM 197 (264)
T ss_dssp TCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEE
T ss_pred CCcceEEEecC--------CHHHHHHHHHhccCCCCEEE
Confidence 99999997642 33456778889999999986
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.1e-14 Score=121.74 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee--cCCCceeeEEEEc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 97 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~iv~~ 97 (306)
..+|.+|||||||+|..+..+++.+.++|++||+| .+++.|+++.+..+ .++.++..++... .++.++||.|+.+
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD 128 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD 128 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeec
Confidence 36788999999999999999998766799999999 89999999887655 4688888887654 3567899999976
Q ss_pred cccc--ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGY--FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~--~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.. .+.+....+.++.++.|+|||||+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~ 160 (229)
T d1zx0a1 129 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160 (229)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred ccccccccccccCHHHHHHHHHHHcCCCcEEE
Confidence 4332 23344567788999999999999986
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=6.7e-15 Score=124.93 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 86 (306)
+..-+..+.. .+.+|.+|||+|||+|.+++.+|+.|+++|+|+|++ .+++.++++++.|++.++++++++|+.++.
T Consensus 94 ~~~er~ri~~--~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~- 170 (260)
T d2frna1 94 NVKERVRMAK--VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP- 170 (260)
T ss_dssp GHHHHHHHHH--HCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-
T ss_pred CHHHHHHHHh--hcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-
Confidence 3334444442 357899999999999999999999888899999999 899999999999999999999999998875
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...||.|+++++.+. ..++..+.++|++||.+.
T Consensus 171 ~~~~~D~Ii~~~p~~~-------~~~l~~a~~~l~~gG~lh 204 (260)
T d2frna1 171 GENIADRILMGYVVRT-------HEFIPKALSIAKDGAIIH 204 (260)
T ss_dssp CCSCEEEEEECCCSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred cCCCCCEEEECCCCch-------HHHHHHHHhhcCCCCEEE
Confidence 4478999998765332 234555668899999874
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=1.3e-14 Score=125.63 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC---eEEEEEceee
Q 021852 7 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN---VITVLKGKIE 82 (306)
Q Consensus 7 R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~---~v~~~~~d~~ 82 (306)
|.+.+.+++.......++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++...++... +..+...++.
T Consensus 40 r~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~ 118 (292)
T d1xvaa_ 40 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL 118 (292)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred hHHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeecccc
Confidence 4445555555545556778999999999999999999986 89999999 99999999887776531 2334444543
Q ss_pred eec--C-CCceeeEEEEc--ccccccC---CcchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE--L-PVTKVDIIISE--WMGYFLL---FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~--~-~~~~~D~iv~~--~~~~~~~---~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+. + +.++||+|++. .+.|... .......+++++.++|||||+++
T Consensus 119 ~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 171 (292)
T d1xvaa_ 119 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 171 (292)
T ss_dssp GHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEE
Confidence 322 1 34789999984 2333221 23467789999999999999997
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.5e-14 Score=120.77 Aligned_cols=117 Identities=14% Similarity=-0.091 Sum_probs=91.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcC----------------CC
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANG----------------FS 71 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~----------------~~ 71 (306)
..+.+.+.+.....++.+|||+|||+|..+..+|+.|. +|+|+|.| .+++.|++...... ..
T Consensus 31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSS 109 (229)
T ss_dssp HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecC
Confidence 33444454445567889999999999999999999988 99999999 89998887654321 12
Q ss_pred CeEEEEEceeeeec-CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 72 NVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 72 ~~v~~~~~d~~~~~-~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+++++.+|+.++. .....||+|+...+.+++ .....+.++..+.++|+|||.++
T Consensus 110 ~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~-~~~~r~~~~~~~~~~LkpgG~~~ 165 (229)
T d2bzga1 110 GNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI-NPGDRKCYADTMFSLLGKKFQYL 165 (229)
T ss_dssp SSEEEEESCGGGGGGSCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred CcEEEEEcchhhccccccCceeEEEEEEEEEec-cchhhHHHHHHHHhhcCCcceEE
Confidence 46899999988775 345789999987654544 44677889999999999999876
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.53 E-value=4.5e-14 Score=119.67 Aligned_cols=106 Identities=24% Similarity=0.274 Sum_probs=87.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....+.++|||||||+|.++..+++. +..+++++|.+++++.+++++...++.++++++.+|+.+. .+ .+||+|++.
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~-~~~D~v~~~ 153 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP-RKADAIILS 153 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-SCEEEEEEE
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-cc-cchhheeec
Confidence 34556789999999999999999984 4568999998889999999999999989999999998653 23 679999987
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+.. .......+++++.+.|||||+++
T Consensus 154 ~vlh~~-~d~~~~~~L~~~~~~LkPGG~l~ 182 (253)
T d1tw3a2 154 FVLLNW-PDHDAVRILTRCAEALEPGGRIL 182 (253)
T ss_dssp SCGGGS-CHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccC-CchhhHHHHHHHHHhcCCCcEEE
Confidence 665543 23345578999999999999987
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=8.8e-15 Score=120.23 Aligned_cols=92 Identities=24% Similarity=0.297 Sum_probs=77.2
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
...++.+|||||||+|.++..++ +++|+|.| .|++.|+++ +++++++|++++++++++||+|++..
T Consensus 33 ~~~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~ 99 (208)
T d1vlma_ 33 CLLPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVT 99 (208)
T ss_dssp HHCCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEES
T ss_pred hhCCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccccccccccccccc
Confidence 34567789999999998877663 56899999 899998763 47899999999988889999999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+++ .++..++.++.++|+|||.++
T Consensus 100 ~l~h~---~d~~~~l~~~~~~L~pgG~l~ 125 (208)
T d1vlma_ 100 TICFV---DDPERALKEAYRILKKGGYLI 125 (208)
T ss_dssp CGGGS---SCHHHHHHHHHHHEEEEEEEE
T ss_pred ccccc---cccccchhhhhhcCCCCceEE
Confidence 54444 567889999999999999987
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=7.8e-14 Score=115.01 Aligned_cols=103 Identities=23% Similarity=0.188 Sum_probs=81.8
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.+...+.+|.+|||||||+|.++..+|+ .| ..+|+++|.+ ++++.|+++++..++. ++.++.+|..+.....++|
T Consensus 67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~~~~~~f 145 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEFSPY 145 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCE
T ss_pred HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHccccccch
Confidence 33446789999999999999999999988 34 4589999998 8999999999999985 6888899987765555789
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|++...... .++ .+.+.|||||+++
T Consensus 146 D~I~~~~~~~~-----~p~----~l~~~LkpGG~lv 172 (213)
T d1dl5a1 146 DVIFVTVGVDE-----VPE----TWFTQLKEGGRVI 172 (213)
T ss_dssp EEEEECSBBSC-----CCH----HHHHHEEEEEEEE
T ss_pred hhhhhhccHHH-----hHH----HHHHhcCCCcEEE
Confidence 99998653221 122 3456799999986
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.49 E-value=5.5e-14 Score=111.90 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=83.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee--ec
Q 021852 9 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE--IE 85 (306)
Q Consensus 9 ~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~ 85 (306)
++..+++.. ...+|.+|||+|||+|.+++.++..|+ +|+++|.+ .+++.++++++.+++.+++....++... ..
T Consensus 29 e~lf~~l~~--~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~ 105 (171)
T d1ws6a1 29 KALFDYLRL--RYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAK 105 (171)
T ss_dssp HHHHHHHHH--HCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHH
T ss_pred HHHHHHhhc--cccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhccccccc
Confidence 444455552 357889999999999999999999987 78899999 8999999999999997766555554321 12
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...++||+|+++++ |.......+..++. ..+|+|||+++
T Consensus 106 ~~~~~fD~If~DPP-Y~~~~~~~l~~l~~--~~ll~~~g~iv 144 (171)
T d1ws6a1 106 AQGERFTVAFMAPP-YAMDLAALFGELLA--SGLVEAGGLYV 144 (171)
T ss_dssp HTTCCEEEEEECCC-TTSCTTHHHHHHHH--HTCEEEEEEEE
T ss_pred ccCCccceeEEccc-cccCHHHHHHHHHH--cCCcCCCeEEE
Confidence 34578999999985 33322233333433 36899999987
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=9.4e-14 Score=114.07 Aligned_cols=108 Identities=24% Similarity=0.225 Sum_probs=85.6
Q ss_pred HHHHHh--cccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC
Q 021852 12 QNVIYQ--NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP 87 (306)
Q Consensus 12 ~~ai~~--~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 87 (306)
..+|.. ...+.||.+|||+|||+|..+..+|+ .+..+|+|+|+| .|++.|+++++..+ ++.++..+.......
T Consensus 43 aa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~ 119 (209)
T d1nt2a_ 43 AAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKY 119 (209)
T ss_dssp HHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGT
T ss_pred HHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCcccc
Confidence 444542 46788999999999999999999998 566799999999 89999999887764 689999998876533
Q ss_pred ---CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 ---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ---~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+|+|+++. ........++.++.++|||||.++
T Consensus 120 ~~~~~~vd~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~ 157 (209)
T d1nt2a_ 120 SGIVEKVDLIYQDI-----AQKNQIEILKANAEFFLKEKGEVV 157 (209)
T ss_dssp TTTCCCEEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccceEEEEEecc-----cChhhHHHHHHHHHHHhccCCeEE
Confidence 24677776642 233566788999999999999986
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.8e-13 Score=116.41 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 85 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 85 (306)
++...+.+... ...++.+|||+|||+|.+++.++. .+..+|+|+|+| .+++.|++++++++++ +++++++|+.+.
T Consensus 94 TE~lv~~~l~~-~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~~~- 170 (274)
T d2b3ta1 94 TECLVEQALAR-LPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA- 170 (274)
T ss_dssp HHHHHHHHHHH-SCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG-
T ss_pred hhhhhhhHhhh-hcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-cceeeecccccc-
Confidence 44444443332 234567899999999999998887 566799999999 8999999999999994 699999998764
Q ss_pred CCCceeeEEEEcccccccCC-----------c------------chHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~-----------~------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++.+||+|+||+. |.... | .....++....++|+|||.++
T Consensus 171 ~~~~~fDlIvsNPP-Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~ 234 (274)
T d2b3ta1 171 LAGQQFAMIVSNPP-YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLL 234 (274)
T ss_dssp GTTCCEEEEEECCC-CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred cCCCceeEEEecch-hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEE
Confidence 45579999999975 32211 1 134567788889999999987
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=8.3e-14 Score=118.41 Aligned_cols=104 Identities=20% Similarity=0.207 Sum_probs=87.5
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
|.....+.+|.+|||+|||+|.++..+|+. + ..+|+++|.+ ++++.|++++++.++.+++.+...|+... ++...+
T Consensus 95 Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-~~~~~~ 173 (266)
T d1o54a_ 95 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDV 173 (266)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSE
T ss_pred HHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-ccccce
Confidence 445577899999999999999999999984 3 4599999999 99999999999999988899999887554 345789
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|.|+.+. .+...++..+.+.|||||+++
T Consensus 174 D~V~~d~--------p~p~~~l~~~~~~LKpGG~lv 201 (266)
T d1o54a_ 174 DALFLDV--------PDPWNYIDKCWEALKGGGRFA 201 (266)
T ss_dssp EEEEECC--------SCGGGTHHHHHHHEEEEEEEE
T ss_pred eeeEecC--------CCHHHHHHHHHhhcCCCCEEE
Confidence 9998754 234567888899999999987
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.46 E-value=1.2e-13 Score=120.25 Aligned_cols=107 Identities=17% Similarity=0.137 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec----CCCceeeEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE----LPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----~~~~~~D~i 94 (306)
..+|++|||++||+|.+++.++..|+++|+++|.| .+++.|+++++.|++. .+++++.+|+.+.. ...++||+|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 56799999999999999999999999999999999 8999999999999995 57999999996642 234789999
Q ss_pred EEcccccccC------CcchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLL------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++++..+... .......++....++|+|||.++
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~ 260 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLII 260 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 9998633211 11245678888889999999998
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=6.2e-14 Score=122.51 Aligned_cols=104 Identities=22% Similarity=0.237 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 96 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~ 96 (306)
.+|++|||++||+|.+++.+|+ |+++|+++|.| .+++.|+++++.||+. +++++++|+.++. ...++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4789999999999999999886 56699999999 8999999999999995 6999999987642 23578999999
Q ss_pred cccccccCCc------chHHHHHHHHhhcccCCeEEE
Q 021852 97 EWMGYFLLFE------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 97 ~~~~~~~~~~------~~~~~~l~~~~~~L~p~G~~i 127 (306)
++..+..... .....++..+.++|+|||.++
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv 258 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILA 258 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 9864433221 233467777889999999998
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.46 E-value=1.4e-13 Score=110.54 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv 95 (306)
..+|.+|||++||+|.+++.++..|+++|+++|.+ .+++.++++++.++..++++++++|+.+.. -...+||+|+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 46799999999999999999999999999999999 899999999999998889999999987642 2346899999
Q ss_pred EcccccccCCcchHHHHHHHHh--hcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARD--KWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~--~~L~p~G~~i 127 (306)
.+|+ |. ......++..+. .+|+++|.++
T Consensus 119 lDPP-Y~---~~~~~~~l~~i~~~~~L~~~giIi 148 (182)
T d2fhpa1 119 LDPP-YA---KQEIVSQLEKMLERQLLTNEAVIV 148 (182)
T ss_dssp ECCC-GG---GCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred echh-hh---hhHHHHHHHHHHHCCCCCCCEEEE
Confidence 9985 32 233444555443 5799999887
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.44 E-value=2.3e-13 Score=117.27 Aligned_cols=106 Identities=23% Similarity=0.133 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEceeeeec----CCCceeeEE
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKIEEIE----LPVTKVDII 94 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~----~~~~~~D~i 94 (306)
..++.+|||++||+|.+++.+++.|+ +|++||.| .+++.|+++++.|++.+ +++++.+|+.++. ....+||+|
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 46788999999999999999999888 89999999 89999999999999875 6999999997653 234789999
Q ss_pred EEcccccccCC-------cchHHHHHHHHhhcccCCeEEE
Q 021852 95 ISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 95 v~~~~~~~~~~-------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+++.-+.... +..+..++..+..+|+|||.++
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l 248 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 248 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 99986443221 2345667778889999998755
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.44 E-value=6.6e-13 Score=112.51 Aligned_cols=106 Identities=23% Similarity=0.202 Sum_probs=87.3
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
..+.+..+|||||||+|.++..++++ +..+++++|.+++++.++++++..++.++++++.+|..+. .| .++|+|++.
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-~p-~~~D~v~~~ 154 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP-LP-VTADVVLLS 154 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-CCEEEEEEE
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeecccc-cc-ccchhhhcc
Confidence 34456689999999999999999984 4559999999889999999999999989999999998753 34 569999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+.. .......+++++.+.|||||+++
T Consensus 155 ~vLh~~-~d~~~~~lL~~i~~~LkpgG~ll 183 (256)
T d1qzza2 155 FVLLNW-SDEDALTILRGCVRALEPGGRLL 183 (256)
T ss_dssp SCGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccc-CcHHHHHHHHHHHhhcCCcceeE
Confidence 665543 33445678999999999999887
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.44 E-value=4e-13 Score=109.72 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=83.3
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEccc
Q 021852 24 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWM 99 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~ 99 (306)
+..|||||||+|..+..+|+ .+...++|+|++ .++..|.+++++.++. |+.++++|+..+. ++.+++|.|+....
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhccccccc
Confidence 45899999999999998888 456699999999 8999999999999995 6999999998765 67789999887543
Q ss_pred ccccCCcc-----hHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFEN-----MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~-----~~~~~l~~~~~~L~p~G~~i 127 (306)
..+....+ ..+.++..+.+.|||||.+.
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~ 141 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIH 141 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEE
Confidence 33221111 12578999999999999986
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=3.5e-13 Score=115.04 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=75.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..++.+|||+|||+|.++..+++.+ ..+++|+|+| .|++.|++.. .+++++.+|+.++++++++||+|++..
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~ 155 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIY 155 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEeecC
Confidence 3567899999999999999999864 4589999999 8999887652 358899999999999889999999853
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
... . +.++.|+|||||.++
T Consensus 156 ~~~------~----~~e~~rvLkpgG~l~ 174 (268)
T d1p91a_ 156 APC------K----AEELARVVKPGGWVI 174 (268)
T ss_dssp CCC------C----HHHHHHHEEEEEEEE
T ss_pred CHH------H----HHHHHHHhCCCcEEE
Confidence 211 1 356789999999997
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=7.4e-14 Score=118.21 Aligned_cols=144 Identities=10% Similarity=0.082 Sum_probs=93.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCe-------------------------
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNV------------------------- 73 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~------------------------- 73 (306)
...++.+|||||||+|.++..++..+..+|+|+|+| .|++.|+++++..+....
T Consensus 48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 345788999999999999888887777799999999 899999999876553210
Q ss_pred ---E-EEEEceee----eecCCCceeeEEEEccccccc-CCcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccccc
Q 021852 74 ---I-TVLKGKIE----EIELPVTKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 144 (306)
Q Consensus 74 ---v-~~~~~d~~----~~~~~~~~~D~iv~~~~~~~~-~~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~~~ 144 (306)
+ .....+.. ..+.+.++||+|++..+.+++ ..+..+..+++.+.++|||||.++. ..+.....+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~------~~~~~~~~~~ 201 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT------TVTLRLPSYM 201 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE------EEESSCCEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEE------EEecccccce
Confidence 0 11111111 112346789999996544433 2345777899999999999999882 2222222211
Q ss_pred cchhccccccCCCCchhhhhhhcCCce
Q 021852 145 DDKIEFWNNVYGFDMSCIKKQAMMEPL 171 (306)
Q Consensus 145 ~~~~~~w~~~~g~~~~~~~~~~~~~~~ 171 (306)
.... ....+.++...+.+.+...++
T Consensus 202 ~~~~--~~~~~~~~~~~~~~~l~~aGf 226 (257)
T d2a14a1 202 VGKR--EFSCVALEKGEVEQAVLDAGF 226 (257)
T ss_dssp ETTE--EEECCCCCHHHHHHHHHHTTE
T ss_pred eccc--cccccCCCHHHHHHHHHHCCC
Confidence 1111 112456777777777665554
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3e-13 Score=117.89 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=82.3
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHc----------CCCCeEEEEEce
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEAN----------GFSNVITVLKGK 80 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~----------~~~~~v~~~~~d 80 (306)
.|.....+.+|.+|||+|||+|.+++.+|++ | ..+|+++|.+ ++++.|++++++. ++.++++++++|
T Consensus 89 ~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d 168 (324)
T d2b25a1 89 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 168 (324)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence 3444567899999999999999999999983 3 4599999999 8999999998753 445789999999
Q ss_pred eeeec--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 81 IEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 81 ~~~~~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+.. ++...||.|+.++. ....++..+.+.|||||+++
T Consensus 169 i~~~~~~~~~~~fD~V~LD~p--------~P~~~l~~~~~~LKpGG~lv 209 (324)
T d2b25a1 169 ISGATEDIKSLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCA 209 (324)
T ss_dssp TTCCC-------EEEEEECSS--------STTTTHHHHGGGEEEEEEEE
T ss_pred hhhcccccCCCCcceEeecCc--------CHHHHHHHHHHhccCCCEEE
Confidence 87653 34578999998643 12246778889999999986
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.6e-13 Score=113.92 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=79.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-HHHHHHHHHHHHcCCC----CeEEEEEceeeeecCCCceee
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-QMANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~D 92 (306)
.+.+|.+|||+|||+|..+..+|+ .| ..+|+++|.+ ++++.|++++++.++. +++.++.+|......+..+||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 578999999999999999988888 34 5599999998 9999999999876653 468999999887665667899
Q ss_pred EEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|++..... ..+ .++.+.|||||+++
T Consensus 153 ~I~~~~~~~-----~ip----~~l~~~LkpGG~LV 178 (224)
T d1i1na_ 153 AIHVGAAAP-----VVP----QALIDQLKPGGRLI 178 (224)
T ss_dssp EEEECSBBS-----SCC----HHHHHTEEEEEEEE
T ss_pred hhhhhcchh-----hcC----HHHHhhcCCCcEEE
Confidence 999864321 112 23557899999986
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=3.2e-13 Score=108.56 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~iv~~~~ 99 (306)
..+++|||++||||.+++.++..|+++|+++|.+ .+++.++++++.++.. +++++.+|+.++. ....+||+|+++|+
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~l~~~~~~fDlIf~DPP 120 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQKGTPHNIVFVDPP 120 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc-ceeeeeecccccccccccccCEEEEcCc
Confidence 4788999999999999999999999999999999 8999999999988874 5899999987653 34578999999985
Q ss_pred ccccCCcchHHHHHHHHh--hcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARD--KWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~--~~L~p~G~~i 127 (306)
|. ....+.++..+. .+|+++|.++
T Consensus 121 -Y~---~~~~~~~l~~l~~~~~L~~~~iIi 146 (183)
T d2fpoa1 121 -FR---RGLLEETINLLEDNGWLADEALIY 146 (183)
T ss_dssp -SS---TTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred -cc---cchHHHHHHHHHHCCCCCCCeEEE
Confidence 32 234455555543 5799999987
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.8e-13 Score=118.94 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=85.2
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHc-------CCC-CeEEEEEceeeee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEAN-------GFS-NVITVLKGKIEEI 84 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~-------~~~-~~v~~~~~d~~~~ 84 (306)
+.+...+.++.+|||+|||+|.+++.+|+ .|+++++|+|++ .+++.|++..+.. |.. .+++++++|+.+.
T Consensus 143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~ 222 (328)
T d1nw3a_ 143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 222 (328)
T ss_dssp HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence 33446788999999999999999998887 677899999999 8999988766542 222 4699999999887
Q ss_pred cCCCc--eeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 ELPVT--KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~~~~~--~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++.+. .+|+|+++.+ . +...+...+.++.+.|||||++|
T Consensus 223 ~~~~~~~~advi~~~~~---~-f~~~~~~~l~e~~r~LKpGg~iv 263 (328)
T d1nw3a_ 223 EWRERIANTSVIFVNNF---A-FGPEVDHQLKERFANMKEGGRIV 263 (328)
T ss_dssp HHHHHHHHCSEEEECCT---T-TCHHHHHHHHHHHTTCCTTCEEE
T ss_pred ccccccCcceEEEEcce---e-cchHHHHHHHHHHHhCCCCcEEE
Confidence 65432 3688887643 2 33567778889999999999997
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.41 E-value=5.6e-13 Score=110.89 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=81.9
Q ss_pred HHHHHHHh---cccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 10 SYQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 10 ~~~~ai~~---~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
....+|.+ ...+.+|.+|||+|||+|..+..+|+. +...|+|+|+| .|++.+++++...+ ++..+..+....
T Consensus 58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~~ 134 (230)
T d1g8sa_ 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANKP 134 (230)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTCG
T ss_pred HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeeccC
Confidence 34455554 356789999999999999999999995 45699999999 89999988766543 567777777654
Q ss_pred c-CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 E-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 ~-~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .....+|++++.. ..........++.++.++|||||.++
T Consensus 135 ~~~~~~~~~v~~i~~---~~~~~~~~~~~l~~~~r~LKpgG~~~ 175 (230)
T d1g8sa_ 135 QEYANIVEKVDVIYE---DVAQPNQAEILIKNAKWFLKKGGYGM 175 (230)
T ss_dssp GGGTTTCCCEEEEEE---CCCSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccceeEEeec---cccchHHHHHHHHHHHHhcccCceEE
Confidence 3 2334445444321 12244667888999999999999876
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.39 E-value=2e-13 Score=112.91 Aligned_cols=100 Identities=22% Similarity=0.245 Sum_probs=77.0
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
+.+...+.++.+|||||||+|.++..+|+.+ .+|+++|.+ ++++.|+++.... ++++++++|......+.++||.
T Consensus 62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHHH
Confidence 3344678999999999999999999999974 599999998 8999998876543 4799999998764434578999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++... . +..+ ..+.+.|+|||+++
T Consensus 138 Iiv~~a---~--~~ip----~~l~~qLk~GGrLV 162 (224)
T d1vbfa_ 138 VVVWAT---A--PTLL----CKPYEQLKEGGIMI 162 (224)
T ss_dssp EEESSB---B--SSCC----HHHHHTEEEEEEEE
T ss_pred HHhhcc---h--hhhh----HHHHHhcCCCCEEE
Confidence 998632 1 1122 23457899999986
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.36 E-value=4.1e-12 Score=103.55 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=82.9
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--CCCceeeEEEEccc
Q 021852 24 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWM 99 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~iv~~~~ 99 (306)
...|||||||+|.++..+|+ .+...++|+|++ .++..|.+++.+++++ ++.++++|+.++. ++..++|.|++...
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhccCCceehhccccc
Confidence 45899999999999999888 456799999999 8999999999999995 6999999998865 67789999987543
Q ss_pred ccccCCc-----chHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFE-----NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~-----~~~~~~l~~~~~~L~p~G~~i 127 (306)
+...-.. -.-+.+++.+.++|+|||.+.
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~ 143 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIH 143 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEE
Confidence 3221111 122578899999999999986
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.7e-12 Score=110.38 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=92.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC---------------------------
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS--------------------------- 71 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~--------------------------- 71 (306)
...+|.+|||+|||+|.+++..+..+..+|+|+|.| .|++.+++.+++....
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 456789999999999988866665456699999999 8999998876543211
Q ss_pred --CeEEEEEceeeeec------CCCceeeEEEEcccccccC-CcchHHHHHHHHhhcccCCeEEEecCceEEEEEeeccc
Q 021852 72 --NVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL-FENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 142 (306)
Q Consensus 72 --~~v~~~~~d~~~~~------~~~~~~D~iv~~~~~~~~~-~~~~~~~~l~~~~~~L~p~G~~ip~~~~~~~~~~~~~~ 142 (306)
....++.+|+..-. .+.++||+|++..+.+.+. ....+..+++.+.++|||||.++ .........
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li------~~~~~~~~~ 204 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL------LIGALEESW 204 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE------EEEEESCCE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE------EecccCCcc
Confidence 01223444443211 2346899999965544443 33467889999999999999988 222222222
Q ss_pred cccchhccccccCCCCchhhhhhhcCCce
Q 021852 143 YKDDKIEFWNNVYGFDMSCIKKQAMMEPL 171 (306)
Q Consensus 143 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~ 171 (306)
+...... | ..++++.+.+.+.+...++
T Consensus 205 ~~~~~~~-~-~~~~~t~e~v~~~l~~aGf 231 (263)
T d2g72a1 205 YLAGEAR-L-TVVPVSEEEVREALVRSGY 231 (263)
T ss_dssp EEETTEE-E-ECCCCCHHHHHHHHHHTTE
T ss_pred cccCCcc-c-ccCCCCHHHHHHHHHHCCC
Confidence 2111111 1 2456777777777665554
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=3.9e-12 Score=103.58 Aligned_cols=76 Identities=30% Similarity=0.326 Sum_probs=67.1
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEc
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 97 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~ 97 (306)
....+|++|||+|||+|.+++.++..|+.+|+|+|++ .+++.|+++++.++. +.+++.+|..++ .++||+|+++
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~---~~~fD~Vi~n 116 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF---NSRVDIVIMN 116 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC---CCCCSEEEEC
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh---CCcCcEEEEc
Confidence 4456789999999999999999999998899999999 899999999988886 578899888765 3789999999
Q ss_pred cc
Q 021852 98 WM 99 (306)
Q Consensus 98 ~~ 99 (306)
+.
T Consensus 117 PP 118 (201)
T d1wy7a1 117 PP 118 (201)
T ss_dssp CC
T ss_pred Cc
Confidence 86
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=1.6e-12 Score=105.02 Aligned_cols=71 Identities=25% Similarity=0.259 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
....|++|||+|||+|.+++.++..|+++|+++|++ .+++.|++++ .+++++.+|+.+++ ++||+|++|+
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~---~~fD~Vi~NP 115 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS---GKYDTWIMNP 115 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC---CCEEEEEECC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC---CcceEEEeCc
Confidence 456799999999999999999999999999999999 8899988864 24789999998753 7899999997
Q ss_pred c
Q 021852 99 M 99 (306)
Q Consensus 99 ~ 99 (306)
.
T Consensus 116 P 116 (197)
T d1ne2a_ 116 P 116 (197)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.34 E-value=1.5e-12 Score=107.84 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=84.7
Q ss_pred HHHHHHHh---cccCCCCCEEEEEcCCCcHHHHHHHH-cC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee
Q 021852 10 SYQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE 83 (306)
Q Consensus 10 ~~~~ai~~---~~~~~~~~~VLDlG~G~G~l~~~~a~-~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 83 (306)
....+|.. ...+.+|.+|||+|||+|..+..+|+ .| ..+|||+|++ .|++.++++++..+ ++..+..|...
T Consensus 57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~ 133 (227)
T d1g8aa_ 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATK 133 (227)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTC
T ss_pred HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCC
Confidence 34455653 45688999999999999999999998 34 5699999999 89999998876543 46677777654
Q ss_pred ec---CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IE---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~---~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. .....+|+|+++.. .......++..+.++|||||.++
T Consensus 134 ~~~~~~~~~~vD~i~~d~~-----~~~~~~~~l~~~~~~LkpgG~lv 175 (227)
T d1g8aa_ 134 PEEYRALVPKVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGM 175 (227)
T ss_dssp GGGGTTTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccceEEEEEEcc-----ccchHHHHHHHHHHhcccCCeEE
Confidence 33 33478999988642 33566778999999999999987
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.34 E-value=5.8e-13 Score=109.37 Aligned_cols=101 Identities=21% Similarity=0.241 Sum_probs=81.0
Q ss_pred HhcccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeE
Q 021852 16 YQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 93 (306)
Q Consensus 16 ~~~~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 93 (306)
.+...+.++.+|||||||+|..+..+|+. | .+|+++|.+ ++++.|++++++.++ +++.++++|..+...+..+||.
T Consensus 71 l~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~pfD~ 148 (215)
T d1jg1a_ 71 LEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAPYDV 148 (215)
T ss_dssp HHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEEE
T ss_pred HHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccCccee
Confidence 34467889999999999999999999984 5 479999998 899999999999998 5799999999875545689999
Q ss_pred EEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 94 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 94 iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|++..... ..... +...|+|||+++
T Consensus 149 Iiv~~a~~-----~ip~~----l~~qL~~gGrLv 173 (215)
T d1jg1a_ 149 IIVTAGAP-----KIPEP----LIEQLKIGGKLI 173 (215)
T ss_dssp EEECSBBS-----SCCHH----HHHTEEEEEEEE
T ss_pred EEeecccc-----cCCHH----HHHhcCCCCEEE
Confidence 99863211 22232 345789999986
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=7.5e-12 Score=111.72 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=79.0
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcC-------CC-CeEEE-EEceeee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANG-------FS-NVITV-LKGKIEE 83 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~-------~~-~~v~~-~~~d~~~ 83 (306)
|.+...+.++++|||||||+|.+++.+|+ .|+++|+|||++ .|++.|+++++..+ .. ..+.+ +.++..+
T Consensus 208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~ 287 (406)
T d1u2za_ 208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD 287 (406)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhh
Confidence 33446789999999999999999998887 677899999999 89999998876532 11 12222 3333322
Q ss_pred ec---CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IE---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~---~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ..-..+|+|+++.. .+...+...+.++.+.|||||++|
T Consensus 288 ~~~~d~~~~~adVV~inn~----~f~~~l~~~L~ei~r~LKPGGrIV 330 (406)
T d1u2za_ 288 NNRVAELIPQCDVILVNNF----LFDEDLNKKVEKILQTAKVGCKII 330 (406)
T ss_dssp CHHHHHHGGGCSEEEECCT----TCCHHHHHHHHHHHTTCCTTCEEE
T ss_pred ccccccccccceEEEEecc----cCchHHHHHHHHHHHhcCCCcEEE
Confidence 21 11246889987642 244677888999999999999987
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=8.6e-12 Score=105.68 Aligned_cols=119 Identities=25% Similarity=0.296 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE- 85 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 85 (306)
++...+.+.......+..+|+|+|||+|.+++.+++.+..+|+|+|+| ..+..|+++++++++.+++.+..+++.+..
T Consensus 95 TE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~ 174 (271)
T d1nv8a_ 95 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK 174 (271)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG
T ss_pred hhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccc
Confidence 444444444333334456899999999999999988777799999999 899999999999999999999999887643
Q ss_pred CCCceeeEEEEcccccccC---------Ccch---------HHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLL---------FENM---------LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~---------~~~~---------~~~~l~~~~~~L~p~G~~i 127 (306)
...++||+||||+. |.-. +|+. +.-+.+-+.++|+|||.++
T Consensus 175 ~~~~~fDlIVsNPP-YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~ 233 (271)
T d1nv8a_ 175 EKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVL 233 (271)
T ss_dssp GGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEE
T ss_pred cccCcccEEEEccc-ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEE
Confidence 22368999999974 3211 1211 1122222457899999886
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=6.7e-12 Score=107.50 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-----CC--CEEEEEech-HHHHHHHHHHHHcCCCCeE--EEEEceeeee------c
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-----GA--AHVYAVECS-QMANMAKQIVEANGFSNVI--TVLKGKIEEI------E 85 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-----g~--~~v~~iD~s-~~~~~a~~~~~~~~~~~~v--~~~~~d~~~~------~ 85 (306)
.++.+|||||||+|.++..+++. +. .+++|+|+| .|++.|+++++....-.++ .+...+++++ .
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 34458999999999987766542 11 268999999 8999999887654322333 4445444432 2
Q ss_pred CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.++||+|++..+.+ +..++..++..+.++|+|||.++
T Consensus 119 ~~~~~fD~I~~~~~l~---~~~d~~~~l~~l~~~LkpgG~l~ 157 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLY---YVKDIPATLKFFHSLLGTNAKML 157 (280)
T ss_dssp SSCCCEEEEEEESCGG---GCSCHHHHHHHHHHTEEEEEEEE
T ss_pred CCCCceeEEEEcccee---cCCCHHHHHHHHHhhCCCCCEEE
Confidence 3468999999965433 33577899999999999999886
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.24 E-value=2.9e-11 Score=96.86 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCC-eEEEEEcee
Q 021852 4 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN-VITVLKGKI 81 (306)
Q Consensus 4 D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~ 81 (306)
|.+| ++..+.+.. ...+.+|||+.||||.+++.|+.+||++|+.+|.+ ..++.++++++..++.+ ...++..|.
T Consensus 28 ~~vr-ealFn~l~~---~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~ 103 (183)
T d2ifta1 28 DRVK-ETLFNWLMP---YIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSS 103 (183)
T ss_dssp CHHH-HHHHHHHHH---HHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCH
T ss_pred HHHH-HHHHHHhhh---hcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccc
Confidence 4555 444444542 24778999999999999999999999999999999 89999999999988754 577777776
Q ss_pred eeec---CCCceeeEEEEcccccccCCcchHHHHHHHHh--hcccCCeEEE
Q 021852 82 EEIE---LPVTKVDIIISEWMGYFLLFENMLNTVLYARD--KWLVDDGIVL 127 (306)
Q Consensus 82 ~~~~---~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~--~~L~p~G~~i 127 (306)
.+.. ....+||+|+.+|+ |. ......++..+. .+|+++|.++
T Consensus 104 ~~~l~~~~~~~~fDlIFlDPP-Y~---~~~~~~~l~~l~~~~~L~~~~lii 150 (183)
T d2ifta1 104 LDFLKQPQNQPHFDVVFLDPP-FH---FNLAEQAISLLCENNWLKPNALIY 150 (183)
T ss_dssp HHHTTSCCSSCCEEEEEECCC-SS---SCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cccccccccCCcccEEEechh-Hh---hhhHHHHHHHHHHhCCcCCCcEEE
Confidence 5432 22457999999986 32 244555666553 5799999987
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=3.9e-12 Score=105.07 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=75.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc----C---CCEEEEEech-HHHHHHHHHHHHc-----CCCCeEEEEEceeeeecC
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA----G---AAHVYAVECS-QMANMAKQIVEAN-----GFSNVITVLKGKIEEIEL 86 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~----g---~~~v~~iD~s-~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~ 86 (306)
.+.++.+|||||||+|.++..+++. | ..+|+++|.+ ++++.|++++... ++ .++.++++|..+...
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~ 155 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYP 155 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc-cEEEEEecccccccc
Confidence 5789999999999999998888873 2 2389999998 8999998886544 33 469999999887655
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+..+||.|++..... ...+ .+.+.|+|||+++
T Consensus 156 ~~~~fD~Iiv~~a~~-----~~p~----~l~~~Lk~gG~lV 187 (223)
T d1r18a_ 156 PNAPYNAIHVGAAAP-----DTPT----ELINQLASGGRLI 187 (223)
T ss_dssp GGCSEEEEEECSCBS-----SCCH----HHHHTEEEEEEEE
T ss_pred cccceeeEEEEeech-----hchH----HHHHhcCCCcEEE
Confidence 567899999864211 1112 3457899999986
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=5.7e-11 Score=97.43 Aligned_cols=104 Identities=21% Similarity=0.404 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCceee
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVD 92 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~D 92 (306)
.+.++|||+|||+|..++.+|++ ...+|+++|.+ ++++.|+++++..|+.++|+++.+++.+.. ....+||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 45689999999999999999984 24699999998 899999999999999999999999987752 2346799
Q ss_pred EEEEcccccccCCcchH-HHHHHHHhhcccCCeEEEecC
Q 021852 93 IIISEWMGYFLLFENML-NTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~~-~~~l~~~~~~L~p~G~~ip~~ 130 (306)
+|+.+.- .+... ...+....++|+|||+++.+.
T Consensus 135 ~ifiD~~-----~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 135 MVFLDHW-----KDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeeeccc-----ccccccHHHHHHHhCccCCCcEEEEeC
Confidence 9997521 11111 223445568999999988443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=6.5e-11 Score=99.42 Aligned_cols=78 Identities=21% Similarity=0.188 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC------CCceeeE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL------PVTKVDI 93 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~~D~ 93 (306)
.+..++||+|||+|.+++.+++ ....+++|+|++ ++++.|+++++.|++.+++.+++.+.....+ ..++||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3456999999999999988877 445699999999 8999999999999999999999876544321 2468999
Q ss_pred EEEccc
Q 021852 94 IISEWM 99 (306)
Q Consensus 94 iv~~~~ 99 (306)
|+|+++
T Consensus 140 ivsNPP 145 (250)
T d2h00a1 140 CMCNPP 145 (250)
T ss_dssp EEECCC
T ss_pred EEecCc
Confidence 999986
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=9.7e-11 Score=96.22 Aligned_cols=103 Identities=18% Similarity=0.106 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~ 91 (306)
..+.++|||||||+|..++.+|+. + ..+|+++|.+ +.++.|++++++.|+.++++++.+++.+.. ...++|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 456789999999999999999984 2 4599999999 999999999999999999999999986632 124689
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
|+|+.+. ........++.+.++|+|||+++.+
T Consensus 137 D~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 137 DVAVVDA------DKENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp EEEEECS------CSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 9999863 2345566777888999999999833
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.05 E-value=5.4e-10 Score=92.08 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--C-----CCcee
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--L-----PVTKV 91 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~~~ 91 (306)
.+.++||++|+++|..++.+|++ + ..+|+.+|.+ +.++.|++++++.|+.++|+++.+++.+.. + ..++|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 45789999999999999999983 3 4699999999 899999999999999999999999996642 1 13589
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEec
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~ 129 (306)
|+|+.+. ........++.+.++|+|||.++.+
T Consensus 138 D~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 138 DFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp SEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred eEEEecc------chhhhHHHHHHHHhhcCCCcEEEEc
Confidence 9999863 2345667777888999999999844
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.97 E-value=1.2e-09 Score=87.65 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=83.8
Q ss_pred cccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCce
Q 021852 18 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTK 90 (306)
Q Consensus 18 ~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~ 90 (306)
.....++.++||++||+|..+..+++ .+..+|+|+|.+ +|++.|+++++..+ +++.+++++..++. +..++
T Consensus 18 ~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~~~~ 95 (192)
T d1m6ya2 18 FLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEK 95 (192)
T ss_dssp HHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSC
T ss_pred hhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcCCCC
Confidence 34567899999999999999998888 456699999999 99999999887654 57999999887753 34579
Q ss_pred eeEEEEccccccc------CCcchHHHHHHHHhhcccCCeEEE
Q 021852 91 VDIIISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 91 ~D~iv~~~~~~~~------~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|.|+.+.-.+.. ..-......+..+.++|+|||.++
T Consensus 96 vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ 138 (192)
T d1m6ya2 96 VDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIV 138 (192)
T ss_dssp EEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEE
T ss_pred cceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeee
Confidence 9999987321110 011345577888889999999986
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=4.1e-09 Score=85.34 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 98 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~ 98 (306)
..++.+|+|+|||.|.-++.+|- .+..+++.+|.+ .-+...++..++.++. +++++++++++.. +..+||+|+|-.
T Consensus 63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~-~~~~fD~V~sRA 140 (207)
T d1jsxa_ 63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-SEPPFDGVISRA 140 (207)
T ss_dssp GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhc-cccccceehhhh
Confidence 34567999999999999999987 456799999988 8889999989999995 6999999999875 347899999976
Q ss_pred cccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 99 MGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+ ..++.++.-..++++++|.++
T Consensus 141 ~-------~~~~~ll~~~~~~l~~~g~~~ 162 (207)
T d1jsxa_ 141 F-------ASLNDMVSWCHHLPGEQGRFY 162 (207)
T ss_dssp S-------SSHHHHHHHHTTSEEEEEEEE
T ss_pred h-------cCHHHHHHHHHHhcCCCcEEE
Confidence 4 456778888889999999987
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.86 E-value=4.7e-09 Score=86.89 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=68.9
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.+.....++++|||||||+|.++..+++.+ ++|+|+|++ .+++.++++.... ++++++++|+.++.++..
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~~ 84 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN 84 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccccc
Confidence 44555556677899999999999999999999985 599999999 8989888765432 479999999998877655
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
....||++..
T Consensus 85 ~~~~vv~NLP 94 (235)
T d1qama_ 85 QSYKIFGNIP 94 (235)
T ss_dssp CCCEEEEECC
T ss_pred ccceeeeeeh
Confidence 5567888864
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.84 E-value=2.7e-09 Score=90.61 Aligned_cols=118 Identities=19% Similarity=0.124 Sum_probs=85.6
Q ss_pred HHHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc---------CCCCeEEEE
Q 021852 10 SYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN---------GFSNVITVL 77 (306)
Q Consensus 10 ~~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~---------~~~~~v~~~ 77 (306)
.|.+.+... ....+.++||.||+|.|..+..+.+.+..+|+++|++ .+++.|++.+..+ .-.++++++
T Consensus 57 ~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~ 136 (276)
T d1mjfa_ 57 SYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLT 136 (276)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEE
T ss_pred HHHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEE
Confidence 455555431 2245678999999999999999888777899999999 8999998765322 123689999
Q ss_pred EceeeeecCCCceeeEEEEcccccccCCc-chHHHHHHHHhhcccCCeEEE
Q 021852 78 KGKIEEIELPVTKVDIIISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 78 ~~d~~~~~~~~~~~D~iv~~~~~~~~~~~-~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+|+....-..++||+|+.+......... -.-..+++.+.+.|+|||+++
T Consensus 137 ~~Da~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v 187 (276)
T d1mjfa_ 137 IGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYV 187 (276)
T ss_dssp ESCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEE
T ss_pred EChHHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEE
Confidence 99997654335789999998654321110 111467888999999999987
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=1.1e-08 Score=90.25 Aligned_cols=93 Identities=20% Similarity=0.147 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-
Q 021852 8 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE- 85 (306)
Q Consensus 8 ~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 85 (306)
++.+.+.+.+.....++.+|||+-||+|.+++.+|+. +++|+|+|.+ ++++.|+++++.|++. +++++.++.++..
T Consensus 197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~~~ 274 (358)
T d1uwva2 197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT 274 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS
T ss_pred hhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhhhh
Confidence 3445555555556778899999999999999999986 5699999999 8999999999999995 6999999887643
Q ss_pred ---CCCceeeEEEEcccccc
Q 021852 86 ---LPVTKVDIIISEWMGYF 102 (306)
Q Consensus 86 ---~~~~~~D~iv~~~~~~~ 102 (306)
....++|+||.++.=.+
T Consensus 275 ~~~~~~~~~d~vilDPPR~G 294 (358)
T d1uwva2 275 KQPWAKNGFDKVLLDPARAG 294 (358)
T ss_dssp SSGGGTTCCSEEEECCCTTC
T ss_pred hhhhhhccCceEEeCCCCcc
Confidence 12367999999987444
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.78 E-value=2.8e-08 Score=81.88 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---CceeeEEEEc
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISE 97 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~iv~~ 97 (306)
++.+++|+|+|.|.-++.+|- .+..+++.+|.+ .-+...+...+..++. ++.++++.++++... .++||+|+|-
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEEh
Confidence 567999999999999999987 567799999988 7888888888888995 689999999876421 2689999997
Q ss_pred ccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 98 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+ ..++.++.-...+++++|.++
T Consensus 149 Av-------a~l~~ll~~~~~~l~~~g~~i 171 (239)
T d1xdza_ 149 AV-------ARLSVLSELCLPLVKKNGLFV 171 (239)
T ss_dssp CC-------SCHHHHHHHHGGGEEEEEEEE
T ss_pred hh-------hCHHHHHHHHhhhcccCCEEE
Confidence 54 467788888899999999987
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=1.6e-08 Score=87.07 Aligned_cols=117 Identities=15% Similarity=0.076 Sum_probs=85.1
Q ss_pred HHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHc--C--CCCeEEEEEceee
Q 021852 11 YQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEAN--G--FSNVITVLKGKIE 82 (306)
Q Consensus 11 ~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~--~--~~~~v~~~~~d~~ 82 (306)
|.+.+... ......++||.||.|.|..+..+++. +..+|+++|++ ++++.|++.+... + -.++++++.+|+.
T Consensus 63 Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~ 142 (312)
T d1uira_ 63 YHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR 142 (312)
T ss_dssp HHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH
T ss_pred HHHHHhhhhhhhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHH
Confidence 55555431 12345689999999999999998885 46799999999 8999999886431 1 1258999999998
Q ss_pred eec-CCCceeeEEEEcccccccCCc----chHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE-LPVTKVDIIISEWMGYFLLFE----NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~-~~~~~~D~iv~~~~~~~~~~~----~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. -..++||+|+++..+.+.... -.-..+++.+.+.|+|||+++
T Consensus 143 ~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv 192 (312)
T d1uira_ 143 AYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMG 192 (312)
T ss_dssp HHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEE
T ss_pred HHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEE
Confidence 753 234789999998654332111 112468888999999999987
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.69 E-value=1.1e-07 Score=78.98 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHHh-----------ccc-CCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcC
Q 021852 3 KDVVRTKSYQNVIYQ-----------NKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANG 69 (306)
Q Consensus 3 ~D~~R~~~~~~ai~~-----------~~~-~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~ 69 (306)
+|..+.+.|.+++.. ... .....+|||||||+|.++..+++ .+.-+++..|..+.++ ..+
T Consensus 49 ~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~ 121 (244)
T d1fp1d2 49 KDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE-------NAP 121 (244)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCC
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhh-------ccC
Confidence 466666777666542 223 34558999999999999999988 5556899999875432 334
Q ss_pred CCCeEEEEEceeeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 ~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..++++++.+|+.+- .| ..|+++...+.|.. .......+++.+.+.|+|||+++
T Consensus 122 ~~~ri~~~~gd~~~~-~p--~~D~~~l~~vLh~~-~de~~~~iL~~~~~aL~pgg~ll 175 (244)
T d1fp1d2 122 PLSGIEHVGGDMFAS-VP--QGDAMILKAVCHNW-SDEKCIEFLSNCHKALSPNGKVI 175 (244)
T ss_dssp CCTTEEEEECCTTTC-CC--CEEEEEEESSGGGS-CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCeEEecCCcccc-cc--cceEEEEehhhhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 457899999998653 33 45999887655543 33445678899999999999987
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.66 E-value=1.1e-09 Score=91.30 Aligned_cols=86 Identities=22% Similarity=0.352 Sum_probs=69.1
Q ss_pred HHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
+.|.+.....++++|||||||+|.++..+++.+ ++|+|+|++ .+++.++++... .++++++++|+.+++++....
T Consensus 19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhh---ccchhhhhhhhhcccccccee
Confidence 334444567789999999999999999999985 599999999 888887665432 257999999999988887788
Q ss_pred eEEEEccccccc
Q 021852 92 DIIISEWMGYFL 103 (306)
Q Consensus 92 D~iv~~~~~~~~ 103 (306)
+.|+++.. |..
T Consensus 95 ~~vv~NLP-Y~I 105 (245)
T d1yuba_ 95 YKIVGNIP-YHL 105 (245)
T ss_dssp EEEEEECC-SSS
T ss_pred eeEeeeee-hhh
Confidence 88999864 444
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.65 E-value=2.5e-08 Score=84.98 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=83.9
Q ss_pred HHHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcC--C-CCeEEEEEceee
Q 021852 10 SYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANG--F-SNVITVLKGKIE 82 (306)
Q Consensus 10 ~~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~ 82 (306)
.|.+.+... ..-...++||-||.|.|..+..+++. +..+|+++|++ ++++.|++.+..+. + .++++++.+|+.
T Consensus 74 ~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~ 153 (295)
T d1inla_ 74 MYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGA 153 (295)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH
T ss_pred hhhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHH
Confidence 455555432 11245689999999999999999885 46799999999 89999998765432 2 258999999997
Q ss_pred eec-CCCceeeEEEEcccccccCC--cchHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE-LPVTKVDIIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~-~~~~~~D~iv~~~~~~~~~~--~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.. -..++||+|+++........ .-.-..+++.+.+.|+|||+++
T Consensus 154 ~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v 201 (295)
T d1inla_ 154 EYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFS 201 (295)
T ss_dssp HHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEE
T ss_pred HHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEE
Confidence 754 23478999999865432111 1112578888999999999987
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.62 E-value=6.8e-08 Score=83.91 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=74.8
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc----C--CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA----G--AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~----g--~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
...++.+|||.|||+|.+...+.+. + ..+++|+|++ .++..|+.++..++. ...+.+++..... +..+||
T Consensus 114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~~fD 190 (328)
T d2f8la1 114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LVDPVD 190 (328)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CCCCEE
T ss_pred CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccc-cccccc
Confidence 3456789999999999998887641 1 2379999999 899999888887776 3566777665443 457999
Q ss_pred EEEEcccccccCCc----------------chHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFE----------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~----------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
+|+++++ +..... .....++....++|+|||+++
T Consensus 191 ~vi~NPP-y~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 191 VVISDLP-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp EEEEECC-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccCCC-CCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 9999985 221111 112245777789999999875
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.60 E-value=4e-08 Score=84.07 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=81.9
Q ss_pred HHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcC--C-CCeEEEEEceeee
Q 021852 11 YQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANG--F-SNVITVLKGKIEE 83 (306)
Q Consensus 11 ~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~ 83 (306)
|.+.+... ......++||-||.|.|..+..+.+. +..+|+.+|++ ++++.|++.+..+. + .++++++.+|...
T Consensus 92 YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~ 171 (312)
T d2b2ca1 92 YQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE 171 (312)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred HHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH
Confidence 55555431 12345689999999999999999985 45799999999 89999998765432 1 2589999999877
Q ss_pred ec-CCCceeeEEEEcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 84 IE-LPVTKVDIIISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~-~~~~~~D~iv~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
.. ...++||+|+.+.......... .-..+++.+.+.|+|||+++
T Consensus 172 ~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v 217 (312)
T d2b2ca1 172 FLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILS 217 (312)
T ss_dssp HHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEE
T ss_pred HHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEE
Confidence 53 2347899999986533211111 22467888899999999997
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=6.8e-08 Score=81.48 Aligned_cols=86 Identities=24% Similarity=0.338 Sum_probs=70.2
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCc
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 89 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 89 (306)
..+.|.+.....++..|||||+|+|.++..+++.+ ++|+++|++ .++...++.+......++++++++|+.+..++
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-- 85 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-- 85 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--
Confidence 33444444567789999999999999999999986 499999999 89999998887766667899999999877654
Q ss_pred eeeEEEEccc
Q 021852 90 KVDIIISEWM 99 (306)
Q Consensus 90 ~~D~iv~~~~ 99 (306)
..+.||++..
T Consensus 86 ~~~~vV~NLP 95 (278)
T d1zq9a1 86 FFDTCVANLP 95 (278)
T ss_dssp CCSEEEEECC
T ss_pred hhhhhhcchH
Confidence 4578899864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=5.1e-08 Score=82.73 Aligned_cols=118 Identities=21% Similarity=0.213 Sum_probs=83.6
Q ss_pred HHHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHc--CC-CCeEEEEEceee
Q 021852 10 SYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEAN--GF-SNVITVLKGKIE 82 (306)
Q Consensus 10 ~~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~ 82 (306)
.|.+.+... ......++||-||.|.|..+..+.+. +..+|+.+|++ ++++.|++.+..+ .+ .++++++.+|+.
T Consensus 63 ~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~ 142 (285)
T d2o07a1 63 SYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGF 142 (285)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH
T ss_pred HHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHH
Confidence 355555422 22345689999999999999999985 57799999999 8999999876532 11 368999999987
Q ss_pred eec-CCCceeeEEEEcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE-LPVTKVDIIISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~-~~~~~~D~iv~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
... -..++||+|+++.......... .-..+++.+.+.|+|||+++
T Consensus 143 ~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v 189 (285)
T d2o07a1 143 EFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLC 189 (285)
T ss_dssp HHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEE
T ss_pred HHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEE
Confidence 753 2347899999986533211111 12256888899999999987
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.58 E-value=6.6e-08 Score=81.64 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcC--C-CCeEEEEEceeeeec-CCCceeeEEE
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIII 95 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~-~~~~~~D~iv 95 (306)
.+.++||-||.|.|..+..+.+. +.++|+.+|++ ++++.|++.+..+. + ..+++++.+|..... -..++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 45689999999999999999985 57899999999 89999988764321 2 258999999987743 3357899999
Q ss_pred EcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.......... --..+++.+.+.|+|||+++
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v 186 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFV 186 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEE
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEE
Confidence 986543221111 13467888899999999987
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=1.7e-07 Score=74.09 Aligned_cols=110 Identities=17% Similarity=0.254 Sum_probs=75.8
Q ss_pred HHHHHHHHHH---hcccCCCCCEEEEEcCCCcHHHHHHHH-c-CCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEcee
Q 021852 7 RTKSYQNVIY---QNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 81 (306)
Q Consensus 7 R~~~~~~ai~---~~~~~~~~~~VLDlG~G~G~l~~~~a~-~-g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~ 81 (306)
|.+++.+.++ +..-+.++.+||||||++|.++..+++ . ....|+++|..+| ..+ +.+.++.+|.
T Consensus 3 rsRaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~i-~~~~~~~~d~ 71 (180)
T d1ej0a_ 3 RSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DPI-VGVDFLQGDF 71 (180)
T ss_dssp SCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CCC-TTEEEEESCT
T ss_pred hhHHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------ccc-CCceEeeccc
Confidence 5566666654 223357889999999999999998887 3 3468999997643 123 4588999988
Q ss_pred eeec--------CCCceeeEEEEcccccccCCcc--------hHHHHHHHHhhcccCCeEEE
Q 021852 82 EEIE--------LPVTKVDIIISEWMGYFLLFEN--------MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 82 ~~~~--------~~~~~~D~iv~~~~~~~~~~~~--------~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.. ....++|+|+|++....-.... .....+.-+.++|++||.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV 133 (180)
T d1ej0a_ 72 RDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFV 133 (180)
T ss_dssp TSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEE
Confidence 6543 2347899999987544322111 12244555668999999997
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.57 E-value=8e-08 Score=81.74 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=85.7
Q ss_pred HHHHHHHhc--ccCCCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcC---CCCeEEEEEceee
Q 021852 10 SYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANG---FSNVITVLKGKIE 82 (306)
Q Consensus 10 ~~~~ai~~~--~~~~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~---~~~~v~~~~~d~~ 82 (306)
.|.+.+... ....+.++||-||.|.|..+..+.+. +..+|+.+|++ ++++.+++.+..+. -.++++++.+|..
T Consensus 65 ~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~ 144 (290)
T d1xj5a_ 65 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGV 144 (290)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHH
T ss_pred HHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHH
Confidence 355555432 12245679999999999999999985 56799999999 89999988764321 2368999999987
Q ss_pred eec--CCCceeeEEEEcccccccCCcc-hHHHHHHHHhhcccCCeEEE
Q 021852 83 EIE--LPVTKVDIIISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 83 ~~~--~~~~~~D~iv~~~~~~~~~~~~-~~~~~l~~~~~~L~p~G~~i 127 (306)
... .+.++||+|+.+.......... --..+++.+.+.|+|||+++
T Consensus 145 ~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v 192 (290)
T d1xj5a_ 145 AFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVC 192 (290)
T ss_dssp HHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEE
T ss_pred HHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEE
Confidence 654 3346899999986543221111 12467888999999999997
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.51 E-value=1.4e-07 Score=82.97 Aligned_cols=99 Identities=20% Similarity=0.126 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCC--------------eEEEEEceeeeec
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSN--------------VITVLKGKIEEIE 85 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~--------------~v~~~~~d~~~~~ 85 (306)
.++.+|||..||||..++.+|+ .|+.+|++.|+| ..++.++++++.|+..+ .+.+.+.|+..+.
T Consensus 44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 4678999999999999997665 788899999999 89999999999998743 3555555654432
Q ss_pred C-CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 ~-~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ..+.||+|..+++|. ...+++++.+.++.||.+.
T Consensus 124 ~~~~~~fDvIDiDPfGs-------~~pfldsAi~a~~~~Gll~ 159 (375)
T d2dula1 124 AERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILG 159 (375)
T ss_dssp HHSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEE
T ss_pred HhhcCcCCcccCCCCCC-------cHHHHHHHHHHhccCCEEE
Confidence 1 246899999998543 2347777778899999986
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.45 E-value=4.7e-07 Score=77.84 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=83.5
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....+|.+|||+.||.|.=+..++.. +...+++.|.+ .-+..+++++++.+.. ++.+...|...+......||.|+
T Consensus 112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~~~~~fD~IL 190 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKIL 190 (313)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEE
T ss_pred ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-ccccccccccccccccccccEEE
Confidence 45678999999999999988888763 34589999998 8888999999999985 57778778776654457899999
Q ss_pred EcccccccCCc------------chH-------HHHHHHHhhcccCCeEEEecC
Q 021852 96 SEWMGYFLLFE------------NML-------NTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 96 ~~~~~~~~~~~------------~~~-------~~~l~~~~~~L~p~G~~ip~~ 130 (306)
.+...++.... ..+ ..++....++|||||.++-+.
T Consensus 191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT 244 (313)
T d1ixka_ 191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 244 (313)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence 98654432211 111 256677778999999998333
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.43 E-value=6.3e-07 Score=74.25 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 100 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~ 100 (306)
....+|||||||+|.++..+++ .+..+++..|..+.++ ..+..++++++.+|+.+-. ..+|+++...+.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~rv~~~~gD~f~~~---p~aD~~~l~~vL 148 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVE-------NLSGSNNLTYVGGDMFTSI---PNADAVLLKYIL 148 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCBTTEEEEECCTTTCC---CCCSEEEEESCG
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHH-------hCcccCceEEEecCcccCC---CCCcEEEEEeec
Confidence 3447899999999999999988 4556999999875543 3345578999999987532 357999987654
Q ss_pred cccCCcchHHHHHHHHhhcccCC---eEEE
Q 021852 101 YFLLFENMLNTVLYARDKWLVDD---GIVL 127 (306)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~L~p~---G~~i 127 (306)
|.. .......+++.+.+.|+|| |+++
T Consensus 149 Hdw-~d~~~~~iL~~~~~al~pgg~~~~ll 177 (244)
T d1fp2a2 149 HNW-TDKDCLRILKKCKEAVTNDGKRGKVT 177 (244)
T ss_dssp GGS-CHHHHHHHHHHHHHHHSGGGCCCEEE
T ss_pred ccC-ChHHHHHHHHHHHHHcCcccCCcEEE
Confidence 543 3344557889999999998 6665
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=6.2e-07 Score=76.02 Aligned_cols=110 Identities=15% Similarity=0.013 Sum_probs=79.5
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-CCCceeeEEE
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 95 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~iv 95 (306)
....++.+|||+++|.|.=+..++..+ ..+|+|+|.+ .-+..+++++++.|+.+ +.+...+..... ....+||.|+
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~~~~~fd~IL 176 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWCGEQQFDRIL 176 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHHTTCCEEEEE
T ss_pred cCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhcccccccEEE
Confidence 456789999999999999998888743 4589999998 78899999999999854 444444433221 2346899999
Q ss_pred EcccccccCC------------cch-------HHHHHHHHhhcccCCeEEEec
Q 021852 96 SEWMGYFLLF------------ENM-------LNTVLYARDKWLVDDGIVLPD 129 (306)
Q Consensus 96 ~~~~~~~~~~------------~~~-------~~~~l~~~~~~L~p~G~~ip~ 129 (306)
.+...++... +.. -..++..+.++|+|||.++-+
T Consensus 177 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYs 229 (284)
T d1sqga2 177 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 229 (284)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 9875443210 011 126677778999999999833
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.40 E-value=9.3e-07 Score=70.56 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCCCcH----HHHHHHHc----CC-CEEEEEech-HHHHHHHHHH--------------HH----cCCC--
Q 021852 22 FKDKVVLDVGAGTGI----LSLFCAKA----GA-AHVYAVECS-QMANMAKQIV--------------EA----NGFS-- 71 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~----l~~~~a~~----g~-~~v~~iD~s-~~~~~a~~~~--------------~~----~~~~-- 71 (306)
.+..+||++|||||. +++.+.+. +. -+|+|.|++ .+++.|++-. .+ .+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345699999999995 45555542 11 279999999 8888886421 10 0100
Q ss_pred ----------CeEEEEEceeeeec-CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 72 ----------NVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 72 ----------~~v~~~~~d~~~~~-~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+.+...+..... .+.++||+|+|--+..++ .......+++.+.+.|+|||.++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-~~~~~~~vl~~l~~~L~pGG~L~ 168 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLF 168 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 01222222222211 234789999995443333 45666789999999999999987
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.33 E-value=1.3e-06 Score=70.82 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=70.7
Q ss_pred HHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-c-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 12 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 12 ~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
.+.+.......++.+|||.|||+|.+...+.+ . ....++|+|++ ..+.. ..+..+++++..... ..
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~-~~ 76 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWE-PG 76 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCC-CS
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhccc-cc
Confidence 34455555667889999999999998877765 2 35589999998 43222 234577888876654 34
Q ss_pred ceeeEEEEcccccccCC--------------------------cchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLF--------------------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~--------------------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+||+|++++....... ......++....++|+|||++.
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~ 141 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV 141 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceE
Confidence 89999999975221100 0012345566778999999976
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.32 E-value=4.8e-07 Score=75.01 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 23 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 23 ~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
+..+|||||||+|.++..+++ .+..+++..|..+.++. ....++++++.+|+.+- .|. .|+++...+.+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~~~r~~~~~~d~~~~-~P~--ad~~~l~~vlh 150 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED-------APSYPGVEHVGGDMFVS-IPK--ADAVFMKWICH 150 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTT-------CCCCTTEEEEECCTTTC-CCC--CSCEECSSSST
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhh-------cccCCceEEeccccccc-CCC--cceEEEEEEee
Confidence 357999999999999999988 45569999998754332 23346899999998653 342 45555443333
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. .......+++++.+.|+|||+++
T Consensus 151 ~~-~d~~~~~iL~~~~~al~pgg~~l 175 (243)
T d1kyza2 151 DW-SDEHCLKFLKNCYEALPDNGKVI 175 (243)
T ss_dssp TS-CHHHHHHHHHHHHHHCCSSSCEE
T ss_pred cC-CHHHHHHHHHHHHHhcCCCceEE
Confidence 22 33456678999999999999877
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=4e-06 Score=71.20 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=66.7
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC---Cceee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~--~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D 92 (306)
....+|.+|||+++|+|.-+..+|. .+..+|+|+|.+ .-+..+++++++.|+. ++.+...|...+... .++||
T Consensus 90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~~fD 168 (293)
T d2b9ea1 90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVH 168 (293)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEE
T ss_pred cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccccccceee
Confidence 3467899999999999998887776 345699999998 7889999999999995 589999888766422 25799
Q ss_pred EEEEcccccc
Q 021852 93 IIISEWMGYF 102 (306)
Q Consensus 93 ~iv~~~~~~~ 102 (306)
.|+.+...++
T Consensus 169 ~VL~DaPCSg 178 (293)
T d2b9ea1 169 YILLDPSCSG 178 (293)
T ss_dssp EEEECCCCCC
T ss_pred EEeecCcccc
Confidence 9999876443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=5.6e-07 Score=74.76 Aligned_cols=85 Identities=9% Similarity=0.056 Sum_probs=62.7
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC-
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV- 88 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~- 88 (306)
..+.|.......+++.|||||||+|.++..+++.+ ++|+|+|++ .+++..++.... .++++++++|+.++.++.
T Consensus 9 ~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~~~~~~ 84 (252)
T d1qyra_ 9 VIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGCCHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhhccccc
Confidence 33444444557789999999999999999999975 589999999 888888764322 257999999998765321
Q ss_pred ----ceeeEEEEccc
Q 021852 89 ----TKVDIIISEWM 99 (306)
Q Consensus 89 ----~~~D~iv~~~~ 99 (306)
..--.|+++..
T Consensus 85 ~~~~~~~~~vvgNlP 99 (252)
T d1qyra_ 85 AEKMGQPLRVFGNLP 99 (252)
T ss_dssp HHHHTSCEEEEEECC
T ss_pred ccccCCCeEEEecch
Confidence 12236778754
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.07 E-value=8.7e-06 Score=63.94 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=75.8
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCceee
Q 021852 19 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 92 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~D 92 (306)
....+|.+++|..+|.|..+..+.+.+ .+|+|+|.+ +++..|++. ...++.+++.+..++. +..+++|
T Consensus 14 l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~~vd 87 (182)
T d1wg8a2 14 LAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVERVD 87 (182)
T ss_dssp HTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCCccC
Confidence 446789999999999999999988874 499999998 788777653 2257999999887764 3347899
Q ss_pred EEEEcccccccCC-------cchHHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~-------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.|+.++ |..... -..+...++....+|+|||.++
T Consensus 88 gIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ 128 (182)
T d1wg8a2 88 GILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLV 128 (182)
T ss_dssp EEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEE
Confidence 999974 221100 0133456777788999999986
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.00 E-value=1.2e-05 Score=71.87 Aligned_cols=106 Identities=19% Similarity=0.067 Sum_probs=75.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHc----C----------CCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeee
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKA----G----------AAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEE 83 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~----g----------~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~ 83 (306)
...++.+|+|-.||+|.+...+.+. + ...++|+|++ .+...|+.++.-++.. +...+...|..+
T Consensus 159 ~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~ 238 (425)
T d2okca1 159 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE 238 (425)
T ss_dssp CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhh
Confidence 3455789999999999998888762 1 1249999998 8889998888777765 235566776654
Q ss_pred ecCCCceeeEEEEcccccccCCc---------------chHHHHHHHHhhcccCCeEEE
Q 021852 84 IELPVTKVDIIISEWMGYFLLFE---------------NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~~~~~~~D~iv~~~~~~~~~~~---------------~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. +..+||+|+++|+. ..... ..-..++..+.++|++||++.
T Consensus 239 ~~-~~~~fD~Ii~NPPf-g~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 295 (425)
T d2okca1 239 KE-PSTLVDVILANPPF-GTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 295 (425)
T ss_dssp SC-CSSCEEEEEECCCS-SCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred hh-cccccceEEecCCC-CCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence 43 45789999999853 22110 112347777889999999875
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.98 E-value=1e-05 Score=65.98 Aligned_cols=114 Identities=13% Similarity=0.207 Sum_probs=73.2
Q ss_pred CCChHHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH----c-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEE
Q 021852 2 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECS-QMANMAKQIVEANGFSNVIT 75 (306)
Q Consensus 2 l~D~~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~----~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~ 75 (306)
++...-...|.+.|.+ .++++|||+|++.|.-+++++. . ..++|+++|++ .....+. .. .++++
T Consensus 63 ~k~p~d~~~~~eli~~----~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~-~~~I~ 132 (232)
T d2bm8a1 63 LKDPDTQAVYHDMLWE----LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SD-MENIT 132 (232)
T ss_dssp CSCHHHHHHHHHHHHH----HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GG-CTTEE
T ss_pred ccCHHHHHHHHHHHHH----hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----cc-cccee
Confidence 4445555677777764 3577999999999987766654 2 25699999986 4322211 11 25799
Q ss_pred EEEceeeeec----CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 76 VLKGKIEEIE----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 76 ~~~~d~~~~~----~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
++.+|..+.. +....+|+|+.+.- | ..+..+..+ ...++|++||.+|...
T Consensus 133 ~i~gDs~~~~~~~~l~~~~~dlIfID~~-H--~~~~v~~~~--~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 133 LHQGDCSDLTTFEHLREMAHPLIFIDNA-H--ANTFNIMKW--AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEECCSSCSGGGGGGSSSCSSEEEEESS-C--SSHHHHHHH--HHHHTCCTTCEEEECS
T ss_pred eeecccccHHHHHHHHhcCCCEEEEcCC-c--chHHHHHHH--HHhcccCcCCEEEEEc
Confidence 9999986543 23456888887642 1 133333333 2458999999988443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.85 E-value=1.7e-05 Score=65.17 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=56.9
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc---C-----CCCeEEEEEceeeeec-CCCceeeEE
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN---G-----FSNVITVLKGKIEEIE-LPVTKVDII 94 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~---~-----~~~~v~~~~~d~~~~~-~~~~~~D~i 94 (306)
.+|||.-||.|..++.+|..|+ +|+++|.+ .+....++.+++. . +..+++++++|+.++. -...+||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 4899999999999999999986 89999988 5555555444322 1 1247999999987753 224679999
Q ss_pred EEcccc
Q 021852 95 ISEWMG 100 (306)
Q Consensus 95 v~~~~~ 100 (306)
..++|.
T Consensus 169 YlDPMF 174 (250)
T d2oyra1 169 YLDPMF 174 (250)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999974
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.76 E-value=7.1e-06 Score=66.83 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=63.7
Q ss_pred HHhcccCCCCCEEEEEcCCCcHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceee
Q 021852 15 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 92 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g-~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 92 (306)
|.+...+.++.+|+|||||.|.++..++... ...|.|+++. ...+. -.....+++ +-+++...+-- ..++..++|
T Consensus 58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv-~~l~~~~~D 134 (257)
T d2p41a1 58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDV-FFIPPERCD 134 (257)
T ss_dssp HHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCT-TTSCCCCCS
T ss_pred HHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhH-HhcCCCcCC
Confidence 3334467788899999999999999999853 3478888864 21000 000111122 22344332221 113568999
Q ss_pred EEEEcccccccCCcch---HHHHHHHHhhcccCCeEEE
Q 021852 93 IIISEWMGYFLLFENM---LNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 93 ~iv~~~~~~~~~~~~~---~~~~l~~~~~~L~p~G~~i 127 (306)
+|+|++..+....+-+ .-.+++.+.++|+|||-++
T Consensus 135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fv 172 (257)
T d2p41a1 135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFC 172 (257)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEE
Confidence 9999964332111111 1145666678999999875
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.59 E-value=3.9e-05 Score=60.08 Aligned_cols=99 Identities=23% Similarity=0.284 Sum_probs=63.2
Q ss_pred HHHHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc---eeeee--
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG---KIEEI-- 84 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~-- 84 (306)
.++.+.....+|.+||-+|+|. |.++..+|+ .|+++|+++|.+ +-++.+++ .|.. .++.. +..+.
T Consensus 18 ~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~ 90 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRK 90 (182)
T ss_dssp HHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccce---EEEeccccchHHHHH
Confidence 3455555678899999999986 777777777 688899999988 77777654 3432 12221 11111
Q ss_pred --c--CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 85 --E--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 85 --~--~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. .....+|+|+--. + ... .++...++|+++|+++
T Consensus 91 ~i~~~~~~~g~Dvvid~v-G----~~~----~~~~a~~~l~~~G~iv 128 (182)
T d1vj0a2 91 AIMDITHGRGADFILEAT-G----DSR----ALLEGSELLRRGGFYS 128 (182)
T ss_dssp HHHHHTTTSCEEEEEECS-S----CTT----HHHHHHHHEEEEEEEE
T ss_pred HHHHhhCCCCceEEeecC-C----chh----HHHHHHHHhcCCCEEE
Confidence 0 1235699988431 1 112 3344558899999986
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.55 E-value=0.00015 Score=56.13 Aligned_cols=96 Identities=22% Similarity=0.228 Sum_probs=62.7
Q ss_pred HhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC
Q 021852 16 YQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 87 (306)
Q Consensus 16 ~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 87 (306)
.+.....+|.+||-+|||. |.++..+++ .|+.+|+++|.+ +-++.+++. |.. .++..+-.+.. +.
T Consensus 21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHT
T ss_pred HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe---EEEeCCCcCHHHHHHHHc
Confidence 3345688999999999986 566666666 688899999987 666766553 442 33433222221 23
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
++.+|+|+-.. .. +..++...++++|+|+++
T Consensus 94 ~gg~D~vid~~-----G~----~~~~~~~~~~~~~~G~i~ 124 (174)
T d1f8fa2 94 DGGVNFALEST-----GS----PEILKQGVDALGILGKIA 124 (174)
T ss_dssp TSCEEEEEECS-----CC----HHHHHHHHHTEEEEEEEE
T ss_pred CCCCcEEEEcC-----Cc----HHHHHHHHhcccCceEEE
Confidence 46799988431 11 234455568999999987
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.53 E-value=0.00019 Score=56.73 Aligned_cols=108 Identities=21% Similarity=0.132 Sum_probs=68.3
Q ss_pred HHHHHHHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-
Q 021852 10 SYQNVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE- 85 (306)
Q Consensus 10 ~~~~ai~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 85 (306)
+|. ++.. ..+.+|.+||.+|||. |.++..+++ .|+++|+++|.+ +-++.|++. |. -.++...-.++.
T Consensus 14 a~~-a~~~-a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~ 84 (195)
T d1kola2 14 GYH-GAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHE 84 (195)
T ss_dssp HHH-HHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHH
T ss_pred HHH-HHHH-hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHH
Confidence 443 3443 6789999999999998 777777776 688899999988 677777553 43 123322111111
Q ss_pred -----CCCceeeEEEEcccccc-------cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -----LPVTKVDIIISEWMGYF-------LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -----~~~~~~D~iv~~~~~~~-------~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+..+|+++-. .+.- ..........++...+.++|+|+++
T Consensus 85 ~i~~~t~g~g~D~vid~-vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~ 137 (195)
T d1kola2 85 QIAALLGEPEVDCAVDA-VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIG 137 (195)
T ss_dssp HHHHHHSSSCEEEEEEC-CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEE
T ss_pred HHHHHhCCCCcEEEEEC-ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEE
Confidence 133579998842 2210 0011122456777789999999987
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.00014 Score=66.43 Aligned_cols=113 Identities=12% Similarity=-0.014 Sum_probs=71.5
Q ss_pred HHHhcccCCCCCEEEEEcCCCcHHHHHHHHc----C---------------CCEEEEEech-HHHHHHHHHHHHcCCCCe
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G---------------AAHVYAVECS-QMANMAKQIVEANGFSNV 73 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~----g---------------~~~v~~iD~s-~~~~~a~~~~~~~~~~~~ 73 (306)
.|.......++.+|+|-.||+|.+...+.+. . ...++|+|.+ .+...|+-++--.+....
T Consensus 155 ~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~ 234 (524)
T d2ar0a1 155 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 234 (524)
T ss_dssp HHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred hhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccccc
Confidence 3333344566789999999999998877652 1 1258999998 888888888776665321
Q ss_pred E----EEEEceeeeec-CCCceeeEEEEcccccccCCc-----------c-hHHHHHHHHhhcccCCeEEE
Q 021852 74 I----TVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFE-----------N-MLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 74 v----~~~~~d~~~~~-~~~~~~D~iv~~~~~~~~~~~-----------~-~~~~~l~~~~~~L~p~G~~i 127 (306)
+ .+...+..... ....+||+|+++|+ +..... . .--.++..+.+.|++||++.
T Consensus 235 i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 235 LDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccchhhhhhhhhhcccccccceeEEecCC-ccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence 1 12222221111 13468999999985 321110 1 11247777889999999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.43 E-value=8.4e-05 Score=57.74 Aligned_cols=97 Identities=25% Similarity=0.221 Sum_probs=63.3
Q ss_pred HHHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----
Q 021852 14 VIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----- 85 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 85 (306)
++.. ..+.+|.+||-+|||. |.++..+++ .|+++|+++|.+ +-++.|++ .|.. .++.-.-+++.
T Consensus 19 a~~~-a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~---~~i~~~~~~~~~~v~~ 90 (174)
T d1jqba2 19 GAEL-ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT---DILNYKNGHIEDQVMK 90 (174)
T ss_dssp HHHH-TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS---EEECGGGSCHHHHHHH
T ss_pred HHHH-hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc---ccccccchhHHHHHHH
Confidence 3443 5788999999999997 888888888 678899999988 66666654 3432 23322211111
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+|+|+-.. + .. ..++...++++|+|.++
T Consensus 91 ~t~g~G~D~vid~~-g----~~----~~~~~a~~~~~~~G~iv 124 (174)
T d1jqba2 91 LTNGKGVDRVIMAG-G----GS----ETLSQAVKMVKPGGIIS 124 (174)
T ss_dssp HTTTSCEEEEEECS-S----CT----THHHHHHHHEEEEEEEE
T ss_pred HhhccCcceEEEcc-C----CH----HHHHHHHHHHhcCCEEE
Confidence 1235699988532 1 12 23444558899999987
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.43 E-value=0.00021 Score=55.33 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=65.1
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-ec-
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-IE- 85 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~- 85 (306)
|..++ +...+.+|.+||-+|||. |.+++.+++ .|+++|+++|.+ +-++.|++ .|.. .++...-.+ ..
T Consensus 17 ~~a~~-~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~ 88 (174)
T d1e3ia2 17 YGAAI-NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQ 88 (174)
T ss_dssp HHHHH-TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHH
T ss_pred HHHHH-HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC---cccCCccchhhhh
Confidence 44443 346688999999999998 888888888 788899999988 66666654 3442 233221111 10
Q ss_pred -----CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCC-eEEE
Q 021852 86 -----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 127 (306)
Q Consensus 86 -----~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~-G~~i 127 (306)
.....+|+++-.. +. +..+....+.++++ |+++
T Consensus 89 ~~~~~~~~~G~d~vie~~--------G~-~~~~~~a~~~~~~g~G~~v 127 (174)
T d1e3ia2 89 DVITELTAGGVDYSLDCA--------GT-AQTLKAAVDCTVLGWGSCT 127 (174)
T ss_dssp HHHHHHHTSCBSEEEESS--------CC-HHHHHHHHHTBCTTTCEEE
T ss_pred hhHhhhhcCCCcEEEEec--------cc-chHHHHHHHHhhcCCeEEE
Confidence 1246799998421 11 23455566888886 8876
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.31 E-value=0.00074 Score=52.12 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=62.1
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee----
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE---- 83 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---- 83 (306)
|..++ +...+.+|.+||-+|||. |.++..+++ .|+++|+++|.+ +-++.|++ .|.. .++...-.+
T Consensus 16 ~~a~~-~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~---~~i~~~~~d~~~~ 87 (174)
T d1p0fa2 16 YGAAV-NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIY 87 (174)
T ss_dssp HHHHH-TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHH
T ss_pred HHHHH-HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc---EEEcCCCchhHHH
Confidence 44433 445689999999999987 566676776 788899999988 77777765 4542 233211111
Q ss_pred -e--cCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 -I--ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 -~--~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
. ...+..+|+++-.. ...+.+...+..+++++|.++
T Consensus 88 ~~~~~~~~~G~d~vid~~--------g~~~~~~~~~~~~~~~~G~~v 126 (174)
T d1p0fa2 88 EVICEKTNGGVDYAVECA--------GRIETMMNALQSTYCGSGVTV 126 (174)
T ss_dssp HHHHHHTTSCBSEEEECS--------CCHHHHHHHHHTBCTTTCEEE
T ss_pred HHHHHhcCCCCcEEEEcC--------CCchHHHHHHHHHHHhcCceE
Confidence 1 02235799988532 122333344444556668776
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.30 E-value=0.00071 Score=52.32 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=62.2
Q ss_pred HHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEE-ceeeeec-----
Q 021852 15 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK-GKIEEIE----- 85 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~----- 85 (306)
+.+.....+|++|+-+|+|. |.++..+++ .|+++|+++|.+ +-++.|++. |.. .+++ .+.....
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~---~~in~~~~~~~~~~~~~ 93 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GAT---ECISPKDSTKPISEVLS 93 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCc---EEECccccchHHHHHHH
Confidence 33345688999999999987 566777777 688899999988 888888765 332 2332 1111110
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+|+++-.. .....+..+...+++++|+++
T Consensus 94 ~~~g~G~d~vi~~~--------g~~~~~~~a~~~~~~~~G~~v 128 (176)
T d1d1ta2 94 EMTGNNVGYTFEVI--------GHLETMIDALASCHMNYGTSV 128 (176)
T ss_dssp HHHTSCCCEEEECS--------CCHHHHHHHHTTSCTTTCEEE
T ss_pred HhccccceEEEEeC--------CchHHHHHHHHHhhcCCeEEE
Confidence 1236799888532 233344455555667768876
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.25 E-value=0.00074 Score=51.90 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=60.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCcee
Q 021852 20 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 91 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~ 91 (306)
.+.++.+||-+|+|. |.++..+++ .|+.+|+++|.+ +-++.+++ .+. + .++..+-+... .....+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga-~--~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGA-D--HVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTC-S--EEEETTSCHHHHHHHHTTTCCE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----ccc-c--eeecCcccHHHHHHHhhCCCCc
Confidence 468899999999987 566666666 788899999987 66666654 343 2 33332211111 123579
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+-.. .. ...++...+.|+++|+++
T Consensus 102 d~vid~~-----g~----~~~~~~a~~~l~~~G~iv 128 (172)
T d1h2ba2 102 NVAMDFV-----GS----QATVDYTPYLLGRMGRLI 128 (172)
T ss_dssp EEEEESS-----CC----HHHHHHGGGGEEEEEEEE
T ss_pred eEEEEec-----Cc----chHHHHHHHHHhCCCEEE
Confidence 9988532 11 224556678999999987
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00024 Score=54.75 Aligned_cols=93 Identities=26% Similarity=0.189 Sum_probs=60.6
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--------CC
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--------LP 87 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~ 87 (306)
..+.++.+||-+|+|+ |.++..+++ .|+.+|+++|.+ +-++.|++ .|.. .++..+-.+.. ..
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~---~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCc---ccccccccccccccccccccC
Confidence 4678899999999987 666777777 688899999988 66676654 3542 12221111110 01
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+|+|+-.. .. +..++...++++++|+++
T Consensus 95 g~g~Dvvid~~-----G~----~~~~~~a~~~~~~gG~iv 125 (171)
T d1pl8a2 95 GCKPEVTIECT-----GA----EASIQAGIYATRSGGTLV 125 (171)
T ss_dssp TSCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEE
T ss_pred CCCceEEEecc-----CC----chhHHHHHHHhcCCCEEE
Confidence 35789988532 11 234555668999999987
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.18 E-value=0.00044 Score=58.96 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~-g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
.++.+|||||+|.|.++..+.+. ++++|+++|.+ ..++..++... .++++++++|+..+
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW 102 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence 35789999999999999999885 46799999999 78888876643 24689999998654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.00035 Score=53.64 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=60.8
Q ss_pred HHHHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEc-eeeee-cCC
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG-KIEEI-ELP 87 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~-~~~ 87 (306)
.++.+ ..+.+|++||.+|+|. |.++..+++ .|+ +|+++|.+ +.++.+++ .|.. .++.. +-.+. ...
T Consensus 18 ~al~~-~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~----lGa~---~~i~~~~~~~~~~~~ 88 (168)
T d1piwa2 18 SPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKY 88 (168)
T ss_dssp HHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHS
T ss_pred HHHHH-hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhc----cCCc---EEeeccchHHHHHhh
Confidence 34443 4688999999999984 777777777 676 89999988 77777765 3542 22221 11111 112
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+|+++.-. +.. .... +....+.|+|+|+++
T Consensus 89 ~~~~d~vi~~~-~~~--~~~~----~~~~~~~l~~~G~iv 121 (168)
T d1piwa2 89 FDTFDLIVVCA-SSL--TDID----FNIMPKAMKVGGRIV 121 (168)
T ss_dssp CSCEEEEEECC-SCS--TTCC----TTTGGGGEEEEEEEE
T ss_pred hcccceEEEEe-cCC--ccch----HHHHHHHhhccceEE
Confidence 36799887521 110 1111 223458999999987
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.88 E-value=0.00077 Score=51.56 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=59.4
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eee-------c-C
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEI-------E-L 86 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~-------~-~ 86 (306)
..+.++.+||-+|||. |.++..+++ .|+ +|+++|.+ +-++.|++. +. + ..+..... .+. . .
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga-~-~~~~~~~~~~~~~~~~~~~~~~ 94 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GA-D-VTLVVDPAKEEESSIIERIRSA 94 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TC-S-EEEECCTTTSCHHHHHHHHHHH
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CC-c-EEEeccccccccchhhhhhhcc
Confidence 4578999999999985 777777777 565 89999988 667777653 33 2 22322111 111 0 1
Q ss_pred CCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 87 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 87 ~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
....+|+|+-.. .. +..+....++++|+|+++
T Consensus 95 ~g~g~D~vid~~-----g~----~~~~~~a~~~~~~~G~iv 126 (170)
T d1e3ja2 95 IGDLPNVTIDCS-----GN----EKCITIGINITRTGGTLM 126 (170)
T ss_dssp SSSCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEE
T ss_pred cccCCceeeecC-----CC----hHHHHHHHHHHhcCCceE
Confidence 135789887431 11 234455568999999987
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0018 Score=49.64 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=60.7
Q ss_pred HHHhcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----
Q 021852 14 VIYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---- 85 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 85 (306)
++.+...+.+|.+||-.|+ | .|.+++.+|+ .|+ +|++++.+ +-.+.++ +.|... ++.-.-.++.
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~----~~Ga~~---vi~~~~~~~~~~i~ 90 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVL----QNGAHE---VFNHREVNYIDKIK 90 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCSE---EEETTSTTHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccCc-cccccccccccccccc----ccCccc---ccccccccHHHHhh
Confidence 3444456789999999996 3 4777888888 566 89988876 5555554 356532 2321111110
Q ss_pred --CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 --~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+|+|+... + ...++...+.|+|+|+++
T Consensus 91 ~~t~~~g~d~v~d~~------g----~~~~~~~~~~l~~~G~iv 124 (174)
T d1yb5a2 91 KYVGEKGIDIIIEML------A----NVNLSKDLSLLSHGGRVI 124 (174)
T ss_dssp HHHCTTCEEEEEESC------H----HHHHHHHHHHEEEEEEEE
T ss_pred hhhccCCceEEeecc------c----HHHHHHHHhccCCCCEEE
Confidence 2346799998632 1 124555668899999987
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.62 E-value=0.0037 Score=47.36 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=59.1
Q ss_pred HHHHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---- 85 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 85 (306)
.++.+ ....++.+||-+|+|. |.++..+++ .| .+|+++|.+ +-++.+++ .|.. .++...-++..
T Consensus 18 ~al~~-~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~ 88 (166)
T d1llua2 18 KGLKQ-TNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQ 88 (166)
T ss_dssp HHHHH-HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHH
T ss_pred HHHHH-hCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHH
Confidence 34544 5678999999999987 777777787 56 599999987 66666654 4542 23332222211
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
...+..|.|++.. . ...+....++|+|+|+++
T Consensus 89 ~~~~g~~~~i~~~~------~----~~~~~~~~~~l~~~G~iv 121 (166)
T d1llua2 89 RDIGGAHGVLVTAV------S----NSAFGQAIGMARRGGTIA 121 (166)
T ss_dssp HHHSSEEEEEECCS------C----HHHHHHHHTTEEEEEEEE
T ss_pred HhhcCCcccccccc------c----chHHHHHHHHhcCCcEEE
Confidence 1123344444321 1 224455668999999987
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.60 E-value=0.00059 Score=51.99 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccc
Q 021852 23 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 99 (306)
Q Consensus 23 ~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~ 99 (306)
++.+|+-||+|. |..+...|+ .|+ .|+++|.+ +.++..+..... +++....+-+.+.-.-..+|+||+..+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aal 104 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVL 104 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeee
Confidence 468999999997 777777777 565 99999998 777776655432 345555444333211246899999653
Q ss_pred ccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 100 GYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.. +...+.-+-+++.+..|||.+++
T Consensus 105 ip---G~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 105 VP---GRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CT---TSSCCCCBCHHHHTTSCTTCEEE
T ss_pred cC---CcccCeeecHHHHhhcCCCcEEE
Confidence 22 22222223345567889999987
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.0084 Score=45.44 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=59.8
Q ss_pred HHHHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeee-ecCCC
Q 021852 13 NVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEE-IELPV 88 (306)
Q Consensus 13 ~ai~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 88 (306)
.++.+ ..+.+|++||-+|+|. |.++..+++ .|+ +++++|.+ +-.+.+++ .|. + .++...-.+ .....
T Consensus 21 ~al~~-~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~----lGa-d--~~i~~~~~~~~~~~~ 91 (168)
T d1uufa2 21 SPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGA-D--EVVNSRNADEMAAHL 91 (168)
T ss_dssp HHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTC-S--EEEETTCHHHHHTTT
T ss_pred HHHHH-hCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhc----cCC-c--EEEECchhhHHHHhc
Confidence 34443 5688999999999986 777777777 566 66788866 65566554 344 2 223222111 11223
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+|+++-.. .....+. ...+.++++|+++
T Consensus 92 ~~~D~vid~~-----g~~~~~~----~~~~~l~~~G~iv 121 (168)
T d1uufa2 92 KSFDFILNTV-----AAPHNLD----DFTTLLKRDGTMT 121 (168)
T ss_dssp TCEEEEEECC-----SSCCCHH----HHHTTEEEEEEEE
T ss_pred CCCceeeeee-----ecchhHH----HHHHHHhcCCEEE
Confidence 6799988532 1222233 3457999999987
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.34 E-value=0.0056 Score=46.49 Aligned_cols=97 Identities=24% Similarity=0.269 Sum_probs=61.4
Q ss_pred HHHhcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----
Q 021852 14 VIYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---- 85 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 85 (306)
++.+ ..+.++.+||-+|+ | .|.++..+++ .|.++|+++|.+ +-.+.+++ .|.. .++..+-.+..
T Consensus 19 al~~-~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~ 90 (170)
T d1jvba2 19 AVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIR 90 (170)
T ss_dssp HHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHH
T ss_pred HHHH-hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc---eeeccCCcCHHHHHH
Confidence 3443 56889999999997 4 3566666666 687899999988 66666654 3542 23333322221
Q ss_pred --CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 --~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+|+++-.. .. +..++...+.++|+|+++
T Consensus 91 ~~~~~~~~d~vid~~-----g~----~~~~~~a~~~l~~~G~iv 125 (170)
T d1jvba2 91 RITESKGVDAVIDLN-----NS----EKTLSVYPKALAKQGKYV 125 (170)
T ss_dssp HHTTTSCEEEEEESC-----CC----HHHHTTGGGGEEEEEEEE
T ss_pred HHhhcccchhhhccc-----cc----chHHHhhhhhcccCCEEE
Confidence 1236799888532 11 234455568999999987
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.32 E-value=0.0091 Score=45.42 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=59.7
Q ss_pred HHhcccCCCCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEce-eee-ec----
Q 021852 15 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK-IEE-IE---- 85 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~~~-~~---- 85 (306)
+.+...+.+|.+||-.|+|. |.++..+++ .|++.|+++|.+ +-.+.+++. |.. .++... ..+ ..
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLI 92 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHHH
Confidence 33446689999999999984 455665666 788899999988 667776653 442 233221 111 10
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+|+|+-.. + . +..+.....++++||.++
T Consensus 93 ~~~~~g~D~vid~~-G----~----~~~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 93 EMTDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVS 126 (176)
T ss_dssp HHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEE
T ss_pred HHcCCCCcEeeecC-C----C----HHHHHHHHHhhcCCceeE
Confidence 1236799998532 1 1 234455567888886654
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.19 E-value=0.034 Score=46.19 Aligned_cols=120 Identities=8% Similarity=0.028 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCC--CeEEEEEceeee
Q 021852 6 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFS--NVITVLKGKIEE 83 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~~~ 83 (306)
.|++.+.+.+.+.... ....|+.+|||-=.-+..+...+..+++=+|..++++.-++.+.+++.. .+..++..|+.+
T Consensus 73 ~Rtr~~D~~~~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 151 (297)
T d2uyoa1 73 VRTNFFDTYFNNAVID-GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 151 (297)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHhh-CCCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccc
Confidence 5677777777654433 2345667999976555554322334677777768888878888877653 456777777754
Q ss_pred ec--------CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 84 IE--------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~--------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-. +.....-++++|.+..++ .+.....++..+..+..||+.++
T Consensus 152 ~~~~~L~~~g~d~~~ptl~i~EGvl~YL-~~~~~~~ll~~i~~~~~~GS~l~ 202 (297)
T d2uyoa1 152 DWPPALRSAGFDPSARTAWLAEGLLMYL-PATAQDGLFTEIGGLSAVGSRIA 202 (297)
T ss_dssp CHHHHHHHTTCCTTSCEEEEECSCGGGS-CHHHHHHHHHHHHHTCCTTCEEE
T ss_pred hHHHHHHhcCCCCCCCEEEEEccccccC-CHHHHHHHHHHHHHhCCCCCEEE
Confidence 21 123456788888776655 66778899999999999999887
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.95 E-value=0.0088 Score=45.09 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=55.2
Q ss_pred ccCCCCCEEEEEcCCC-cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CCCcee
Q 021852 19 KFLFKDKVVLDVGAGT-GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 91 (306)
Q Consensus 19 ~~~~~~~~VLDlG~G~-G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~ 91 (306)
..+.++.+||-.|+|+ |.++..+++....+|++++.+ +-++.+++ .|.. .++...-.+.. ...+..
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~---~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHHSSEE
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcc---eecccccchhhhhcccccCCCc
Confidence 4578999999999987 677777777433389999987 66665544 4542 22221111111 122444
Q ss_pred eEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 92 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 92 D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
|+|+. .. . ...+....+.|+|+|.++
T Consensus 96 ~~v~~-~~-----~----~~~~~~a~~~l~~~G~i~ 121 (168)
T d1rjwa2 96 AAVVT-AV-----S----KPAFQSAYNSIRRGGACV 121 (168)
T ss_dssp EEEES-SC-----C----HHHHHHHHHHEEEEEEEE
T ss_pred eEEee-cC-----C----HHHHHHHHHHhccCCceE
Confidence 54443 21 1 234455668899999987
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.59 E-value=0.012 Score=47.34 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=40.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHH
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVE 66 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~ 66 (306)
-.+|..|||--||+|..+.++.+.| .+.+|+|++ +.++.|+++++
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence 4789999999999999999988886 599999999 89999998875
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.55 E-value=0.016 Score=46.78 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=71.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHcCC-----------------------------------------CEEEEEech-HH
Q 021852 20 FLFKDKVVLDVGAGTGILSLFCAKAGA-----------------------------------------AHVYAVECS-QM 57 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~l~~~~a~~g~-----------------------------------------~~v~~iD~s-~~ 57 (306)
....+..++|--||+|-+.+.+|.... ..++|.|.+ .+
T Consensus 47 ~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~a 126 (249)
T d1o9ga_ 47 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA 126 (249)
T ss_dssp SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHH
Confidence 344566899999999999887764210 135678877 77
Q ss_pred HHHH---HHHHHHcCCCCeEEEEEceeeeecC-----CCceeeEEEEcccccc--cCCc-----chHHHHHHHHhhcccC
Q 021852 58 ANMA---KQIVEANGFSNVITVLKGKIEEIEL-----PVTKVDIIISEWMGYF--LLFE-----NMLNTVLYARDKWLVD 122 (306)
Q Consensus 58 ~~~a---~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~D~iv~~~~~~~--~~~~-----~~~~~~l~~~~~~L~p 122 (306)
++.| +++++..|+.+.|.+...|+.+... +....++||+|+. |+ +..+ ..+..+...+.+.+..
T Consensus 127 i~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP-YGERl~~~~~~~~~~~~~~~~~l~~~~p~ 205 (249)
T d1o9ga_ 127 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP-YGERTHWEGQVPGQPVAGLLRSLASALPA 205 (249)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC-GGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC-ccccccccccchHHHHHHHHHHHHccCCC
Confidence 7777 5688899999889999998865431 2366799999974 43 2111 2345555566666654
Q ss_pred CeEEE
Q 021852 123 DGIVL 127 (306)
Q Consensus 123 ~G~~i 127 (306)
...++
T Consensus 206 ~s~~~ 210 (249)
T d1o9ga_ 206 HAVIA 210 (249)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 44443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.44 E-value=0.06 Score=40.65 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=35.9
Q ss_pred HHhcccCCCCCEEEEEcCCCc-HHHHHHHH-cCCCEEEEEech-HHHHHHHHH
Q 021852 15 IYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECS-QMANMAKQI 64 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~G-~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~ 64 (306)
+.+...+.+|++||-+|+|.+ ..+..+++ .|+.+|+++|.+ +-.+.+++.
T Consensus 20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence 334456899999999999763 33444444 788899999988 667766543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.36 E-value=0.044 Score=45.48 Aligned_cols=68 Identities=26% Similarity=0.222 Sum_probs=50.5
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC-CceeeEEEEccc
Q 021852 25 KVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 99 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~ 99 (306)
.+|||+-||.|.+++-+-++|...+.++|++ ..++..+.+. + -.++.+|+.++... -..+|++++.+.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g~P 70 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGPP 70 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeeccc
Confidence 3699999999999998888899888899998 5555544442 2 25677888887521 246999998653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.028 Score=42.71 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=60.3
Q ss_pred HHHhcccCCCCCEEEEEcCCC--cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----
Q 021852 14 VIYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---- 85 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~--G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 85 (306)
++.+...+.+|.+||-.|+|. |.++..+|+ .|+ +|++++.+ +-.+.+++ .|.. .++..+-.++.
T Consensus 19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~----lGa~---~vi~~~~~d~~~~v~ 90 (179)
T d1qora2 19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLK 90 (179)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHh----cCCe---EEEECCCCCHHHHHH
Confidence 344445678999999997775 567777777 565 89999988 66666654 3542 23322212221
Q ss_pred --CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 --~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+..+|+|+-.. +.. .+......++++|.++
T Consensus 91 ~~t~g~g~d~v~d~~------g~~----~~~~~~~~l~~~G~~v 124 (179)
T d1qora2 91 EITGGKKVRVVYDSV------GRD----TWERSLDCLQRRGLMV 124 (179)
T ss_dssp HHTTTCCEEEEEECS------CGG----GHHHHHHTEEEEEEEE
T ss_pred HHhCCCCeEEEEeCc------cHH----HHHHHHHHHhcCCeee
Confidence 1346899887532 112 2334457899999876
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.12 E-value=0.011 Score=49.18 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=40.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN 68 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~ 68 (306)
-.+|..|||.-||+|..+.+|.+.|- +.+|+|++ +.++.|++++..+
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 56899999999999999999988864 99999999 8999998876543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.10 E-value=0.023 Score=46.26 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=41.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN 68 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~ 68 (306)
-.+|..|||--+|+|..+.++.+.| ++.+|+|++ +..+.|+++++..
T Consensus 205 s~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC
T ss_pred cCCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence 4689999999999999999998886 499999999 8999999888754
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.00 E-value=0.059 Score=41.00 Aligned_cols=97 Identities=19% Similarity=0.081 Sum_probs=60.5
Q ss_pred HHHhcccCCCCCEEEEEcCCC--cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----
Q 021852 14 VIYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---- 85 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~--G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 85 (306)
++.+...+.+|++||-.|++. |..+..+|+ .|+ +|+++..+ +-.+.+++ .|... + +...+-....
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~----~Ga~~-v-i~~~~~~~~~~~~~ 92 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFDA-A-FNYKTVNSLEEALK 92 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSE-E-EETTSCSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh----hhhhh-h-cccccccHHHHHHH
Confidence 344456788999999988866 466677777 455 99999977 65555543 45421 1 2222211110
Q ss_pred -CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+|+|+-.. + ...++...+.|+++|.++
T Consensus 93 ~~~~~Gvd~v~D~v------G----~~~~~~~~~~l~~~G~~v 125 (182)
T d1v3va2 93 KASPDGYDCYFDNV------G----GEFLNTVLSQMKDFGKIA 125 (182)
T ss_dssp HHCTTCEEEEEESS------C----HHHHHHHGGGEEEEEEEE
T ss_pred HhhcCCCceeEEec------C----chhhhhhhhhccCCCeEE
Confidence 2346799988421 1 124556678999999987
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.045 Score=44.31 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 87 (306)
.+|++||--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+.+.++..+.+|+.+.. -.
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 678999999999874 3555667787 89999988 777777777777776678889999987643 01
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.++.|++|.+.
T Consensus 87 ~g~iD~lVnnA 97 (257)
T d1xg5a_ 87 HSGVDICINNA 97 (257)
T ss_dssp HCCCSEEEECC
T ss_pred cCCCCEEEecc
Confidence 25799999874
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.89 E-value=0.021 Score=43.62 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=57.5
Q ss_pred HHHhcccCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----
Q 021852 14 VIYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---- 85 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~-G-~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 85 (306)
++.+...+.+|++||-.|+ | .|.++..+|+ .|+ +|+++..+ +-.+.++ +.|.. .++..+-.++.
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~----~~Ga~---~vi~~~~~~~~~~v~ 87 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS----RLGVE---YVGDSRSVDFADEIL 87 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH----TTCCS---EEEETTCSTHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccc----ccccc---ccccCCccCHHHHHH
Confidence 3444566889999999874 3 3666777777 566 77777655 5555544 45653 22322211211
Q ss_pred --CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 --~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+..+|+|+... +.. .++...+.|+++|+++
T Consensus 88 ~~t~~~g~d~v~d~~------g~~----~~~~~~~~l~~~G~~v 121 (183)
T d1pqwa_ 88 ELTDGYGVDVVLNSL------AGE----AIQRGVQILAPGGRFI 121 (183)
T ss_dssp HHTTTCCEEEEEECC------CTH----HHHHHHHTEEEEEEEE
T ss_pred HHhCCCCEEEEEecc------cch----HHHHHHHHhcCCCEEE
Confidence 2346899999632 112 3444568999999987
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.76 E-value=0.0054 Score=47.15 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHH
Q 021852 23 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQI 64 (306)
Q Consensus 23 ~~~~VLDlG~G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~ 64 (306)
++.+|+-||+|. |..+...|. .|+ +|+++|.+ +.++..+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESL 71 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHT
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence 467999999998 666766666 666 99999988 766666553
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.67 E-value=0.014 Score=44.34 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=57.2
Q ss_pred HHHhcccCCCCCEEEEEcC-CC-cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEcee-eeecCCC
Q 021852 14 VIYQNKFLFKDKVVLDVGA-GT-GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI-EEIELPV 88 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~-G~-G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~ 88 (306)
++.+ ..+.+|++||-.|+ |. |.++..+|+ .|+ +|++++.+ +-.+.+++ .|... + +...+. .... ..
T Consensus 19 al~~-~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~~-~-i~~~~~~~~~~-~~ 89 (171)
T d1iz0a2 19 ALKR-AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEE-A-ATYAEVPERAK-AW 89 (171)
T ss_dssp HHHH-TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSE-E-EEGGGHHHHHH-HT
T ss_pred HHHH-hCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----cccce-e-eehhhhhhhhh-cc
Confidence 3443 56889999999985 33 567777777 566 89999976 55555543 45532 2 211121 1111 23
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|+|+- .. + ..+ ....+.|+|+|+++
T Consensus 90 ~g~D~v~d-~~-----G-~~~----~~~~~~l~~~G~~v 117 (171)
T d1iz0a2 90 GGLDLVLE-VR-----G-KEV----EESLGLLAHGGRLV 117 (171)
T ss_dssp TSEEEEEE-CS-----C-TTH----HHHHTTEEEEEEEE
T ss_pred cccccccc-cc-----c-hhH----HHHHHHHhcCCcEE
Confidence 67999874 22 2 122 34457999999987
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.43 E-value=0.05 Score=44.10 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----------C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 87 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+...+...++..+.+|+.+..- .
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 468899999999874 4667777887 89999987 7777666666555544578888999866430 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-++.|++|.+.
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 25799999874
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.33 E-value=0.037 Score=47.12 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=61.3
Q ss_pred CEEEEEcCCCcHHHHHHHH------------cC---C--CEEEEEec-h-HHHHHHHHHHHHcCCCCe--EEEEEceeee
Q 021852 25 KVVLDVGAGTGILSLFCAK------------AG---A--AHVYAVEC-S-QMANMAKQIVEANGFSNV--ITVLKGKIEE 83 (306)
Q Consensus 25 ~~VLDlG~G~G~l~~~~a~------------~g---~--~~v~~iD~-s-~~~~~a~~~~~~~~~~~~--v~~~~~d~~~ 83 (306)
-+|.|+||.+|.-++.+.+ .+ . -+|+.-|. + +.-...+..-.......+ +..+.+..-.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 5799999999987753322 11 1 15677773 3 333333222111111111 2234444444
Q ss_pred ecCCCceeeEEEEcccccccCC------------------------------cchHHHHHHHHhhcccCCeEEE
Q 021852 84 IELPVTKVDIIISEWMGYFLLF------------------------------ENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 84 ~~~~~~~~D~iv~~~~~~~~~~------------------------------~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-.+|.++.|+++|....|++.. ..++..+|+.+.+-|+|||+++
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mv 206 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV 206 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 3478899999999655554431 1266789999999999999987
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.28 E-value=0.098 Score=38.93 Aligned_cols=84 Identities=15% Similarity=0.054 Sum_probs=54.4
Q ss_pred EEEEEcCCC--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEcccccc
Q 021852 26 VVLDVGAGT--GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 102 (306)
Q Consensus 26 ~VLDlG~G~--G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~~ 102 (306)
+|.-||+|. +.++..+++.|. +|++.|.+ +.++.+++ .+.-+ ....+.+.+ ...|+|+...
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~~~~----~~~DiIilav---- 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD---EAGQDLSLL----QTAKIIFLCT---- 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS---EEESCGGGG----TTCSEEEECS----
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHH----hhccc---eeeeecccc----cccccccccC----
Confidence 577889885 355666666766 89999988 66655543 34322 112222211 5689988642
Q ss_pred cCCcchHHHHHHHHhhcccCCeEEE
Q 021852 103 LLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 103 ~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.......+++.+...++++..++
T Consensus 66 --p~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 66 --PIQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp --CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred --cHhhhhhhhhhhhhhccccccee
Confidence 23466778888888899988876
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.27 E-value=0.047 Score=41.18 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=36.2
Q ss_pred HHHhcccCCCCCEEEEEcCCCc-HHHHHHHH-cCCCEEEEEech-HHHHHHHH
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECS-QMANMAKQ 63 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G-~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~ 63 (306)
++.+...+.+|.+||-+|+|.+ ..+..+++ .++.+|+++|.+ +-++.+++
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence 3344457899999999999984 44443444 788899999987 66666654
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.26 E-value=0.036 Score=46.34 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCC-CceeeEEEEccc
Q 021852 22 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 99 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~iv~~~~ 99 (306)
..+.+|||+-||.|.+++.+.++|...|.++|.+ ..++..+.+.. + ..++|+.++... -..+|+++..+.
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~-----~---~~~~Di~~~~~~~~~~~Dll~ggpP 80 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG-----E---KPEGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS-----C---CCBSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC-----C---CCcCchhcCchhhcceeeeeecccc
Confidence 3578999999999999999999998888999998 66666666542 1 235777766422 246999998653
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.19 Score=42.02 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEcCCCcHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHcC---------------
Q 021852 6 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANG--------------- 69 (306)
Q Consensus 6 ~R~~~~~~ai~~~~~~~~~~~VLDlG~G~G~l~~~~a~-~g~~~v~~iD~s~~~~~a~~~~~~~~--------------- 69 (306)
.|+.++...+.+.....+...|+-||||.=.....+.. .+..+++=+|..++++.=++.++++.
T Consensus 79 ~Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~ 158 (328)
T d1rjda_ 79 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 158 (328)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhcccccccccc
Confidence 57888888877655556677999999999777766654 33224444554444443334443321
Q ss_pred -----CCCeEEEEEceeeeec---------CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 70 -----FSNVITVLKGKIEEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 70 -----~~~~v~~~~~d~~~~~---------~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
-+++...+.+|+.+.. +.....-++++|.+..++ .+.....+++.+.+....+..++
T Consensus 159 ~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl-~~~~~~~li~~~~~~f~~~~~i~ 229 (328)
T d1rjda_ 159 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-HNNESQLLINTIMSKFSHGLWIS 229 (328)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHHHHHCSSEEEEE
T ss_pred ccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcC-CHHHHHHHHHHHHHhCCCceEEE
Confidence 1245777888876643 123455689999876665 55667788888777765544443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.1 Score=41.83 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------C
Q 021852 21 LFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------L 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 86 (306)
...|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++...+.++..+ .++..+.+|+.+.. -
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4578999999999983 4667777887 89999988 77766666666655 46889999987763 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..+..|+++.+.
T Consensus 81 ~~g~idilinna 92 (244)
T d1yb1a_ 81 EIGDVSILVNNA 92 (244)
T ss_dssp HTCCCSEEEECC
T ss_pred HcCCCceeEeec
Confidence 235799999864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.89 E-value=0.12 Score=38.59 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=55.2
Q ss_pred EEEEEcCCC--cHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEEEccccc
Q 021852 26 VVLDVGAGT--GILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 101 (306)
Q Consensus 26 ~VLDlG~G~--G~l~~~~a~~g~-~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv~~~~~~ 101 (306)
+|+-||||. |.++..+.+.|. .+|+++|.+ +.++.+++. +..+ ....+.... .....|+|+...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~~~~--~~~~~dlIila~--- 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID---EGTTSIAKV--EDFSPDFVMLSS--- 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS---EEESCGGGG--GGTCCSEEEECS---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch---hhhhhhhhh--hccccccccccC---
Confidence 588899986 355666766663 589999998 777776543 3322 111122211 124579988643
Q ss_pred ccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 102 FLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.......++..+..+++++..++
T Consensus 71 ---p~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 71 ---PVRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp ---CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ---Cchhhhhhhhhhhcccccccccc
Confidence 22456677788888899887775
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.02 Score=48.14 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=49.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCC--EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---CCCceeeEEEEc
Q 021852 24 DKVVLDVGAGTGILSLFCAKAGAA--HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISE 97 (306)
Q Consensus 24 ~~~VLDlG~G~G~l~~~~a~~g~~--~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~iv~~ 97 (306)
..+|+|+-||.|.+++.+.++|.. -|.++|++ ..++..+.+. +...++.+|+.++. ++...+|++++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcCCCCccEEEee
Confidence 357999999999999888777864 47899998 5555555442 12456777877664 222468999986
Q ss_pred cc
Q 021852 98 WM 99 (306)
Q Consensus 98 ~~ 99 (306)
+.
T Consensus 76 pP 77 (343)
T d1g55a_ 76 PP 77 (343)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.56 E-value=0.081 Score=40.49 Aligned_cols=103 Identities=15% Similarity=0.062 Sum_probs=56.5
Q ss_pred HHHhcccCCCCCEEEEEcCCC---cHHHHHHHH-cCCCEEEEEe-chHHHHHHHHHHHHcCCCCeEEEEEceeeeec---
Q 021852 14 VIYQNKFLFKDKVVLDVGAGT---GILSLFCAK-AGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIE--- 85 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~---G~l~~~~a~-~g~~~v~~iD-~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 85 (306)
++.+...+.+|.+||-+.+|+ |..++.+|+ .|+ +|+++= ..+..+...+.+++.|....+..-..+..++.
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v 97 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTI 97 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHH
Confidence 444556788888888884444 455666677 677 666653 32444444455556676322211111221111
Q ss_pred -----CCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 86 -----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 86 -----~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.....+|+++-. + +.+ .+....+.|+|+|+++
T Consensus 98 ~~~~~~~g~~vdvv~D~-v-----g~~----~~~~~~~~l~~~G~~v 134 (189)
T d1gu7a2 98 KEWIKQSGGEAKLALNC-V-----GGK----SSTGIARKLNNNGLML 134 (189)
T ss_dssp HHHHHHHTCCEEEEEES-S-----CHH----HHHHHHHTSCTTCEEE
T ss_pred HHHHhhccCCceEEEEC-C-----Ccc----hhhhhhhhhcCCcEEE
Confidence 013569998842 1 112 2234458899999987
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=93.37 E-value=0.2 Score=40.33 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec--------C---
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--------L--- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--- 86 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+.++..+ .++.++.+|+.+.. .
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 479999999998873 4566677787 89999988 66766666676665 36888888886542 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
-..+.|++|.+.
T Consensus 83 ~~~~idilvnnA 94 (259)
T d2ae2a_ 83 FHGKLNILVNNA 94 (259)
T ss_dssp TTTCCCEEEECC
T ss_pred hCCCceEEEECC
Confidence 124799999863
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.37 E-value=0.16 Score=38.75 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=57.0
Q ss_pred ccCCCC--CEEEEEcC--CCcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----CC
Q 021852 19 KFLFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 87 (306)
Q Consensus 19 ~~~~~~--~~VLDlG~--G~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 87 (306)
..+.+| .+||-.|+ |.|..++.+|+ .|+..|+++..+ +....+ .+..+.. .++...-+++. ..
T Consensus 24 ~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l---~~~~gad---~vi~~~~~~~~~~~~~~~ 97 (187)
T d1vj1a2 24 GHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFL---TSELGFD---AAVNYKTGNVAEQLREAC 97 (187)
T ss_dssp SCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHH---HHHSCCS---EEEETTSSCHHHHHHHHC
T ss_pred hCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhh---hhcccce---EEeeccchhHHHHHHHHh
Confidence 445665 78999884 45889999999 788888888765 433322 2233442 23332222211 12
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEe
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
.+.+|+|+-.. + ...++...+.|+++|+++.
T Consensus 98 ~~GvDvv~D~v------G----g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 98 PGGVDVYFDNV------G----GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp TTCEEEEEESS------C----HHHHHHHHTTEEEEEEEEE
T ss_pred ccCceEEEecC------C----chhHHHHhhhccccccEEE
Confidence 36799998421 1 1245556689999999873
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=93.14 E-value=0.17 Score=38.64 Aligned_cols=81 Identities=15% Similarity=0.051 Sum_probs=51.0
Q ss_pred HHHhcccCCCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---C
Q 021852 14 VIYQNKFLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---L 86 (306)
Q Consensus 14 ai~~~~~~~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~ 86 (306)
.........+|++||-.|++.| .++..+++.|+ +|+.++.+ +-++.+.+.+..+. ++.+...|..+.. -
T Consensus 13 ~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~ 88 (191)
T d1luaa1 13 VVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAE 88 (191)
T ss_dssp HHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHH
T ss_pred HHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHH
Confidence 3344455678999999998876 34556677887 89999987 66655555554432 2334444443321 1
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
--+.+|++|.+.
T Consensus 89 ~~~~iDilin~A 100 (191)
T d1luaa1 89 AVKGAHFVFTAG 100 (191)
T ss_dssp HTTTCSEEEECC
T ss_pred HhcCcCeeeecC
Confidence 125689999863
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.94 E-value=0.12 Score=41.39 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 87 (306)
.+++++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++..+.+|+.+.. -.
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 84 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE 84 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHh
Confidence 468999999988873 2444455676 89999988 77777777776655 36888999987643 01
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.++.|++|.+.
T Consensus 85 ~g~iDilvnna 95 (251)
T d2c07a1 85 HKNVDILVNNA 95 (251)
T ss_dssp CSCCCEEEECC
T ss_pred cCCceeeeecc
Confidence 36899999864
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.90 E-value=0.25 Score=39.67 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----------C
Q 021852 22 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----------L 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 86 (306)
.+|+++|-.|+..| .++..+++.|+ +|+.++.+ +-++.+.+.++..+. ++.++.+|+.+.. .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence 47899999999887 34566677887 89999988 677777777777664 5788888886543 1
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
-.+..|+++.+.
T Consensus 81 ~~g~idilinna 92 (258)
T d1ae1a_ 81 FDGKLNILVNNA 92 (258)
T ss_dssp TTSCCCEEEECC
T ss_pred hCCCcEEEeccc
Confidence 125789998753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.67 E-value=0.47 Score=33.57 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=40.8
Q ss_pred EEEEEcCCCcHHHHHHHH----cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEE
Q 021852 26 VVLDVGAGTGILSLFCAK----AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 96 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a~----~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~ 96 (306)
+|+-+|+| .++..+++ .|. .|+.+|.+ +.++.+++. . .+.++++|..+.. ..-..+|.+++
T Consensus 2 ~IvI~G~G--~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~---~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp EEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred EEEEECCC--HHHHHHHHHHHHCCC-CcceecCChhhhhhhhhh---h----hhhhccCcccchhhhhhcChhhhhhhcc
Confidence 57777775 45444443 554 89999998 766655432 1 2578889987654 23467899887
Q ss_pred c
Q 021852 97 E 97 (306)
Q Consensus 97 ~ 97 (306)
-
T Consensus 72 ~ 72 (132)
T d1lssa_ 72 V 72 (132)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=92.59 E-value=0.23 Score=42.61 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=46.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-c--CCCEEEEEech-HHHHHHHHHHHHcCCCC---eEEEEEcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAK-A--GAAHVYAVECS-QMANMAKQIVEANGFSN---VITVLKGKI 81 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~-~--g~~~v~~iD~s-~~~~~a~~~~~~~~~~~---~v~~~~~d~ 81 (306)
..++.+++|+|+-.|..+..+++ . ...+|+++|++ ...+..+++++.+...+ ++.++..-.
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~al 277 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 277 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEEEEe
Confidence 45678999999999988876655 2 24599999998 88999999998887542 466655433
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.16 Score=41.26 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=49.5
Q ss_pred CCEE-EEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----------CC
Q 021852 24 DKVV-LDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 88 (306)
Q Consensus 24 ~~~V-LDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~~ 88 (306)
|++| |-=|+++|+ ++..+++.+..+|+.++.+ +-++.+.+.++..+. ++.++.+|+.+..- ..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 5666 555666653 2344455544599999988 777777777776664 57889999876540 12
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
++.|++|.+.
T Consensus 80 g~iDiLVnNA 89 (275)
T d1wmaa1 80 GGLDVLVNNA 89 (275)
T ss_dssp SSEEEEEECC
T ss_pred CCcEEEEEcC
Confidence 5799999974
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.24 E-value=0.14 Score=38.84 Aligned_cols=97 Identities=16% Similarity=0.077 Sum_probs=56.7
Q ss_pred HHhcccCCCCCEEEEEcCCC--cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee--cCCC
Q 021852 15 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI--ELPV 88 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~--G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~ 88 (306)
+.......+|.+||--|++. |.+++.+|+ .|+ +|+++-.+ +-.+.+++ .|....+. ...+..+. ....
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~----lGa~~vi~-~~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEVLA-REDVMAERIRPLDK 96 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEEEE-CC---------CCS
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHh----cccceeee-cchhHHHHHHHhhc
Confidence 43445566789999998655 567777787 555 88888866 66666654 34422121 11111111 1234
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
+.+|+|+=.. +... +....+.|+|+|+++
T Consensus 97 ~gvD~vid~v------gg~~----~~~~l~~l~~~Griv 125 (176)
T d1xa0a2 97 QRWAAAVDPV------GGRT----LATVLSRMRYGGAVA 125 (176)
T ss_dssp CCEEEEEECS------TTTT----HHHHHHTEEEEEEEE
T ss_pred cCcCEEEEcC------Cchh----HHHHHHHhCCCceEE
Confidence 7899887532 1122 334458999999997
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=92.15 E-value=0.24 Score=39.72 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CCCc
Q 021852 24 DKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LPVT 89 (306)
Q Consensus 24 ~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 89 (306)
|+++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+. ++.++.+|+.+.. -.-+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6788999988874 4556677787 89999988 777777777776653 6888999986653 0135
Q ss_pred eeeEEEEcc
Q 021852 90 KVDIIISEW 98 (306)
Q Consensus 90 ~~D~iv~~~ 98 (306)
+.|++|.+.
T Consensus 79 ~iDilVnnA 87 (257)
T d2rhca1 79 PVDVLVNNA 87 (257)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEecc
Confidence 799999863
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.11 E-value=0.2 Score=40.37 Aligned_cols=74 Identities=24% Similarity=0.209 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C----C-
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L----P- 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~- 87 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+. ++..+.+|+.+.. + .
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHH
Confidence 478999999998874 4666677887 89999987 666666666666553 6888888886542 0 0
Q ss_pred -CceeeEEEEcc
Q 021852 88 -VTKVDIIISEW 98 (306)
Q Consensus 88 -~~~~D~iv~~~ 98 (306)
.++.|++|.+.
T Consensus 83 ~~g~idilvnnA 94 (259)
T d1xq1a_ 83 FGGKLDILINNL 94 (259)
T ss_dssp HTTCCSEEEEEC
T ss_pred hCCCcccccccc
Confidence 25799999864
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.99 E-value=0.29 Score=39.50 Aligned_cols=74 Identities=26% Similarity=0.355 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKIEEIE----------L 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 86 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++.++. ++.++.+|+.+.. -
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence 568999999998874 5666677887 88888854 567777777777664 6888888886643 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..++.|++|.+.
T Consensus 93 ~~g~idilV~na 104 (272)
T d1g0oa_ 93 IFGKLDIVCSNS 104 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCcccccc
Confidence 125789999864
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.93 E-value=0.25 Score=39.69 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.++..+ .++..+.+|+.+.. + .
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478999999998874 4666677887 89999988 77777777777665 36888898886543 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-++.|++|.+.
T Consensus 80 ~g~iDilVnna 90 (260)
T d1zema1 80 FGKIDFLFNNA 90 (260)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCeehhhh
Confidence 25799999863
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=91.67 E-value=0.2 Score=40.25 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-H-HHHHHHHHHHHcCCCCeEEEEEceeeeec----------C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 86 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ + ..+.+++..+..+ .++..+.+|+.+.. -
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999988873 4566677787 89999976 4 4555555555555 36888899986653 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
.-++.|++|.+.
T Consensus 84 ~~g~iDilVnnA 95 (260)
T d1h5qa_ 84 DLGPISGLIANA 95 (260)
T ss_dssp HSCSEEEEEECC
T ss_pred HhCCCcEecccc
Confidence 136899999864
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.25 E-value=0.23 Score=40.24 Aligned_cols=76 Identities=21% Similarity=0.398 Sum_probs=56.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec-----C-----
Q 021852 22 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~----- 86 (306)
.+|+++|--|+++| .++..+++.|+ +|+.++.+ +-++.+.+.+++.+.. .++..+.+|+.+.. +
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 47899999998887 34566677887 89999988 7777777777766654 46889999986643 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
.-++.|++|.+.
T Consensus 82 ~~g~iDilvnnA 93 (272)
T d1xkqa_ 82 QFGKIDVLVNNA 93 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCceEEEeCC
Confidence 125799999873
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.20 E-value=0.32 Score=38.90 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=51.0
Q ss_pred CEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CCCce
Q 021852 25 KVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LPVTK 90 (306)
Q Consensus 25 ~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~ 90 (306)
+++|--|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+ .++..+.+|+.+.. -.-++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 456888988763 3556667787 89999988 77777777777665 36888899987653 01368
Q ss_pred eeEEEEcc
Q 021852 91 VDIIISEW 98 (306)
Q Consensus 91 ~D~iv~~~ 98 (306)
.|++|.+.
T Consensus 79 iDilVnnA 86 (255)
T d1gega_ 79 FDVIVNNA 86 (255)
T ss_dssp CCEEEECC
T ss_pred ccEEEecc
Confidence 99999863
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.14 E-value=0.27 Score=39.53 Aligned_cols=76 Identities=24% Similarity=0.369 Sum_probs=56.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec-----C-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~----- 86 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+.. .++.++.+|+.+.. +
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 478999999998873 3556677887 89999987 7777777777766654 46889999986543 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
.-++.|++|.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 125799999874
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.07 E-value=0.27 Score=39.78 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCC-CeEEEEEceeeeec-----C-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFS-NVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~----- 86 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+...+.. .++..+.+|+.+.. +
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 468999999998874 4566667787 89999988 7777777777776654 47899999986653 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
.-++.|++|.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 125799999874
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.28 Score=39.24 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----CC
Q 021852 23 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 88 (306)
Q Consensus 23 ~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 88 (306)
+|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+....-..++.++.+|+.+.. + .-
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 58899999998873 3555566787 89999987 666665555544333357889999987643 0 12
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
++.|++|.+.
T Consensus 81 G~iDilVnnA 90 (254)
T d2gdza1 81 GRLDILVNNA 90 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCcCeecccc
Confidence 5799999874
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=90.71 E-value=0.36 Score=39.29 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=51.6
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEech-HHHH-HHHHHHHHcCCCCeEEEEEceeeeec----------
Q 021852 21 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-QMAN-MAKQIVEANGFSNVITVLKGKIEEIE---------- 85 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD~s-~~~~-~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 85 (306)
..+|+++|--|+++| .++..+++.|+ +|+.+|.+ +-++ .+++..+..+ .++.++.+|+.+..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhh
Confidence 356899999999887 34555666786 99999977 5444 4444444444 46788888886543
Q ss_pred CCCceeeEEEEcc
Q 021852 86 LPVTKVDIIISEW 98 (306)
Q Consensus 86 ~~~~~~D~iv~~~ 98 (306)
...+..|+++.+.
T Consensus 99 ~~~g~iDilvnnA 111 (294)
T d1w6ua_ 99 KVAGHPNIVINNA 111 (294)
T ss_dssp HHTCSCSEEEECC
T ss_pred hhccccchhhhhh
Confidence 1136799999864
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=90.52 E-value=0.19 Score=37.59 Aligned_cols=96 Identities=20% Similarity=0.116 Sum_probs=56.4
Q ss_pred HHhcccCCCCCEEEEEcCCC--cHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceee-e-e-cCC
Q 021852 15 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE-E-I-ELP 87 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G~--G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~-~-~~~ 87 (306)
+.+.....++.+||--|++. |.++..+|+ .|+ +|+++--+ +-.+.+++ .|.. .+ +...+.. + . ...
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~----lGad-~v-i~~~~~~~~~~~~~~ 87 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ----LGAS-EV-ISREDVYDGTLKALS 87 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH----HTCS-EE-EEHHHHCSSCCCSSC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHh----hccc-ce-Eeccchhchhhhccc
Confidence 44433455566788877533 567777777 676 89999877 66666644 3542 12 2212111 1 1 122
Q ss_pred CceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 88 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 88 ~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.+.+|+|+-.. .. ..+.+..+.|+|+|+++
T Consensus 88 ~~gvd~vid~v------gg----~~~~~~~~~l~~~G~iv 117 (167)
T d1tt7a2 88 KQQWQGAVDPV------GG----KQLASLLSKIQYGGSVA 117 (167)
T ss_dssp CCCEEEEEESC------CT----HHHHHHHTTEEEEEEEE
T ss_pred CCCceEEEecC------cH----HHHHHHHHHhccCceEE
Confidence 46799988532 11 23445668999999987
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.88 E-value=0.37 Score=38.55 Aligned_cols=74 Identities=26% Similarity=0.355 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----------C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 87 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++.+|+.+..- .
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478999999988763 3455566777 89999987 77777767777665 368888999876430 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-++.|++|.+.
T Consensus 86 ~g~iDilvnnA 96 (255)
T d1fmca_ 86 LGKVDILVNNA 96 (255)
T ss_dssp HSSCCEEEECC
T ss_pred cCCCCEeeeCC
Confidence 25799999864
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=89.62 E-value=0.35 Score=38.91 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+.. .+++.++.+|+.+.. + .
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999998873 3455666787 89999987 666555554433 245888888886643 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.+++|++|.+.
T Consensus 80 ~g~iD~lVnnA 90 (268)
T d2bgka1 80 HGKLDIMFGNV 90 (268)
T ss_dssp HSCCCEEEECC
T ss_pred cCCcceecccc
Confidence 25799999864
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.27 E-value=0.5 Score=37.40 Aligned_cols=70 Identities=23% Similarity=0.180 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCcee
Q 021852 22 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 91 (306)
Q Consensus 22 ~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~ 91 (306)
.+|+++|--|+++| .++..+++.|+ +|+.+|.+ +-++.+.+. . ..+..+..|+.+.. -.-++.
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~---~---~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRE---C---PGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHh---c---CCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 57899999999887 34566677787 89999987 554444332 2 13667777876543 123689
Q ss_pred eEEEEcc
Q 021852 92 DIIISEW 98 (306)
Q Consensus 92 D~iv~~~ 98 (306)
|++|.+.
T Consensus 78 DilVnnA 84 (244)
T d1pr9a_ 78 DLLVNNA 84 (244)
T ss_dssp CEEEECC
T ss_pred eEEEecc
Confidence 9999864
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=88.90 E-value=1.2 Score=33.00 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=48.7
Q ss_pred HHHHHHhcccCCCCCEEEEEcCCCc-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCC
Q 021852 11 YQNVIYQNKFLFKDKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPV 88 (306)
Q Consensus 11 ~~~ai~~~~~~~~~~~VLDlG~G~G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 88 (306)
|.+.+.......++++||-+|+|-- .....+...+.++|+.+.-+ +-++...+.+...+ ++.....+. .+.
T Consensus 5 f~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~---~~~~~~~~~----~~~ 77 (171)
T d1p77a1 5 LVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG---NIQAVSMDS----IPL 77 (171)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS---CEEEEEGGG----CCC
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc---ccchhhhcc----ccc
Confidence 5566665445668899999999863 33333333456799999877 55554444443322 344443332 233
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
..+|+||...
T Consensus 78 ~~~diiIN~t 87 (171)
T d1p77a1 78 QTYDLVINAT 87 (171)
T ss_dssp SCCSEEEECC
T ss_pred cccceeeecc
Confidence 6799999853
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.59 E-value=0.12 Score=41.59 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=37.8
Q ss_pred EEEEceeeee--cCCCceeeEEEEcccccccC---------CcchHHHHHHHHhhcccCCeEEE
Q 021852 75 TVLKGKIEEI--ELPVTKVDIIISEWMGYFLL---------FENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 75 ~~~~~d~~~~--~~~~~~~D~iv~~~~~~~~~---------~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.++.+|..++ .+|++++|+|++++. |... +...+...+.++.|+|+|+|.++
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPP-Yn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~ 68 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIA 68 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCC-CCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 4677777664 277899999999985 3321 12345667788899999999886
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=88.48 E-value=0.69 Score=34.28 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=54.3
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc--CCCCeEEE----EEceeeeecCCCceeeEEE
Q 021852 25 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN--GFSNVITV----LKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 25 ~~VLDlG~G~G--~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~--~~~~~v~~----~~~d~~~~~~~~~~~D~iv 95 (306)
++|--+|+|.- .++..+++.|. .|+.+|.+ +-++.+++.-... ........ +..+..+. -..+|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEE
Confidence 57888999984 44556677776 99999987 5555544321000 00000011 11111111 14589988
Q ss_pred EcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 96 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
.-. .......+++++..+|+++..++
T Consensus 78 i~v------~~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 78 IVV------PAIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp ECS------CGGGHHHHHHHHGGGCCTTCEEE
T ss_pred EEE------chhHHHHHHHHhhhccCCCCEEE
Confidence 742 33456788888989999988765
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.08 E-value=0.7 Score=36.49 Aligned_cols=70 Identities=21% Similarity=0.179 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec------CCCcee
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 91 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~ 91 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+. . ..+..+..|+.+.. -.-++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~---~---~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKE---C---PGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh---c---CCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 478999999998873 4556667787 89999977 544333222 1 23667778876543 123689
Q ss_pred eEEEEcc
Q 021852 92 DIIISEW 98 (306)
Q Consensus 92 D~iv~~~ 98 (306)
|++|.+.
T Consensus 76 DilVnnA 82 (242)
T d1cyda_ 76 DLLVNNA 82 (242)
T ss_dssp SEEEECC
T ss_pred eEEEECC
Confidence 9999863
|
| >d1sdwa2 b.121.1.2 (A:199-356) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: PHM/PNGase F family: Peptidylglycine alpha-hydroxylating monooxygenase, PHM domain: Peptidylglycine alpha-hydroxylating monooxygenase, PHM species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.96 E-value=0.16 Score=37.73 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=28.4
Q ss_pred CCceeEEEecCCeeeccCCCEEEEEEEEeeCC
Q 021852 245 THWKQTVLYLEDVLTICEGEAISGSLTVAPNK 276 (306)
Q Consensus 245 ~~W~q~~~~l~~p~~v~~g~~l~~~~~~~~~~ 276 (306)
.+|.|.+++|++|+.|.+||.|..+..++.+.
T Consensus 70 p~~~Q~~y~l~~~v~i~~GD~L~~~C~Ydnt~ 101 (158)
T d1sdwa2 70 PQLPQAFYPVEHPVDVTFGDILAARCVFTGEG 101 (158)
T ss_dssp TTSCCCCEEEEEEEEECTTCEEEEEEEECCTT
T ss_pred CCCCcCeeecCCceEecCCCEEEEEEEEcCCC
Confidence 46779999999999999999999999998653
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.91 E-value=0.91 Score=35.99 Aligned_cols=74 Identities=22% Similarity=0.351 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHH-HHHHHHHHHcCCCCeEEEEEceeeeec-----C-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMA-NMAKQIVEANGFSNVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 86 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +-+ +.+++..+..+ .++..+.+|+.+.. +
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 468999999998873 4666677887 89999977 544 44444445555 35888889986543 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
.-+++|++|.+.
T Consensus 80 ~~g~iDiLVnnA 91 (251)
T d1vl8a_ 80 KFGKLDTVVNAA 91 (251)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 125799999864
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.51 E-value=1.3 Score=36.13 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=53.8
Q ss_pred cCCCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcC---CCCeEEEEEceeeeec-----C-
Q 021852 20 FLFKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANG---FSNVITVLKGKIEEIE-----L- 86 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~-----~- 86 (306)
...+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.+.... ...++..+.+|+.+.. +
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 86 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 86 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence 34688999999998873 3455566787 89999987 66665555554432 1246888999987653 0
Q ss_pred ----CCceeeEEEEcc
Q 021852 87 ----PVTKVDIIISEW 98 (306)
Q Consensus 87 ----~~~~~D~iv~~~ 98 (306)
..++.|++|.+.
T Consensus 87 ~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 87 STLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHhCCeEEEEeec
Confidence 125799999874
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=87.31 E-value=1.5 Score=34.50 Aligned_cols=77 Identities=21% Similarity=0.147 Sum_probs=48.1
Q ss_pred cCCCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEe---ch-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-------
Q 021852 20 FLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVE---CS-QMANMAKQIVEANGFSNVITVLKGKIEEIE------- 85 (306)
Q Consensus 20 ~~~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD---~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 85 (306)
...|+.++|-.|++.| .++..+++.|+++|+.+- .+ +.++...+.++..+ .++.++.+|+.+..
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dv~d~~~~~~~~~ 82 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLG 82 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHH
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhcc--ccccccccccchHHHHHHhhc
Confidence 3568889999997665 334555667887777663 22 33333333344555 37999999986542
Q ss_pred --CCCceeeEEEEcc
Q 021852 86 --LPVTKVDIIISEW 98 (306)
Q Consensus 86 --~~~~~~D~iv~~~ 98 (306)
......|.|+.+.
T Consensus 83 ~i~~~~~i~~vv~~a 97 (259)
T d2fr1a1 83 GIGDDVPLSAVFHAA 97 (259)
T ss_dssp TSCTTSCEEEEEECC
T ss_pred ccccccccccccccc
Confidence 1224688888753
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=87.04 E-value=0.37 Score=38.56 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech--HHHHHHHHHH-HHcCCCCeEEEEEceeeeec-----C----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS--QMANMAKQIV-EANGFSNVITVLKGKIEEIE-----L---- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s--~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~-----~---- 86 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+ +..+ .++.++.+|+.+.. +
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 468899998988874 4556677787 89999964 4565555444 3334 36888999987643 0
Q ss_pred -CCceeeEEEEcc
Q 021852 87 -PVTKVDIIISEW 98 (306)
Q Consensus 87 -~~~~~D~iv~~~ 98 (306)
.-++.|++|.+.
T Consensus 79 ~~~G~iDiLVnnA 91 (260)
T d1x1ta1 79 RQMGRIDILVNNA 91 (260)
T ss_dssp HHHSCCSEEEECC
T ss_pred HHhCCCcEEEeec
Confidence 125799999864
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=86.93 E-value=2.9 Score=30.99 Aligned_cols=95 Identities=19% Similarity=0.051 Sum_probs=53.1
Q ss_pred HHhcccCCCCCEEEEEcCC--CcHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee--cCCC
Q 021852 15 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI--ELPV 88 (306)
Q Consensus 15 i~~~~~~~~~~~VLDlG~G--~G~l~~~~a~-~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~ 88 (306)
+.+.....++.+||-.|+. .|..++.+|+ .|+ +|+++..+ +..+.+++ .|. -.++.-+-.+. .+..
T Consensus 23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~----lGa---d~vi~~~~~~~~~~l~~ 94 (177)
T d1o89a2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKS----LGA---SRVLPRDEFAESRPLEK 94 (177)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTE---EEEEEGGGSSSCCSSCC
T ss_pred HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHh----hcc---ccccccccHHHHHHHHh
Confidence 3333334445578876643 2455666677 566 78888866 66665554 343 22333221111 1334
Q ss_pred ceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEE
Q 021852 89 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 89 ~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~i 127 (306)
..+|.++ +.+ .. ..+....+.|+++|+++
T Consensus 95 ~~~~~vv-D~V-----gg----~~~~~~l~~l~~~Griv 123 (177)
T d1o89a2 95 QVWAGAI-DTV-----GD----KVLAKVLAQMNYGGCVA 123 (177)
T ss_dssp CCEEEEE-ESS-----CH----HHHHHHHHTEEEEEEEE
T ss_pred hcCCeeE-EEc-----ch----HHHHHHHHHhccccceE
Confidence 5688876 322 11 23556668899999998
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=86.70 E-value=0.65 Score=36.69 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=49.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------CC
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 87 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+. .+...+.+|+.+.. -.
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 468999999988873 4556666787 89999987 66555544432 35677888876543 01
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-++.|++|.+.
T Consensus 76 ~g~iDilVnnA 86 (243)
T d1q7ba_ 76 FGEVDILVNNA 86 (243)
T ss_dssp TCSCSEEEECC
T ss_pred cCCcceehhhh
Confidence 35799999864
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=86.36 E-value=0.26 Score=38.97 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=36.9
Q ss_pred EEEEceeeee--cCCCceeeEEEEcccccccCC---------c---chHHHHHHHHhhcccCCeEEE
Q 021852 75 TVLKGKIEEI--ELPVTKVDIIISEWMGYFLLF---------E---NMLNTVLYARDKWLVDDGIVL 127 (306)
Q Consensus 75 ~~~~~d~~~~--~~~~~~~D~iv~~~~~~~~~~---------~---~~~~~~l~~~~~~L~p~G~~i 127 (306)
+++++|..++ .+|++++|+|++++. |.... + ..+...+.++.|+|+|+|.++
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPP-Y~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~ 71 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPP-YNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLY 71 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCC-CSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCC-CCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccc
Confidence 4788888764 277899999999975 43211 0 123456778889999999875
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=85.74 E-value=0.78 Score=36.50 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEE-ech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------C
Q 021852 22 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAV-ECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----------L 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~i-D~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 86 (306)
..|++||--|+++| .++..+++.|+ +|+.+ ..+ +.++.+.+.++..+- ++..+.+|+.+.. .
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence 46899999997776 44566667788 56654 455 677777777877764 6888999986543 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..+..|++|.+.
T Consensus 81 ~~g~idilinna 92 (259)
T d1ja9a_ 81 HFGGLDFVMSNS 92 (259)
T ss_dssp HHSCEEEEECCC
T ss_pred HcCCCcEEEecc
Confidence 125799999864
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=85.43 E-value=0.63 Score=36.96 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+. ..+++.++.+|+.+.. + .
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999988873 3556677787 89999987 66666655543 2357889999987643 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-++.|++|.+.
T Consensus 80 ~G~iDiLVnnA 90 (251)
T d1zk4a1 80 FGPVSTLVNNA 90 (251)
T ss_dssp HSSCCEEEECC
T ss_pred hCCceEEEecc
Confidence 25799999864
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.12 E-value=1.1 Score=35.66 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeecC----------
Q 021852 21 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 86 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 86 (306)
..+|+++|--|+++| .++..+++.|+ +|+.++.+ +-++.+.+......- ..+.++..|..+...
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 88 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGK 88 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHH
Confidence 357899999999998 34666677787 89999987 666665544433322 357777777654320
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..+..|+++.+.
T Consensus 89 ~~g~~~~li~na 100 (269)
T d1xu9a_ 89 LMGGLDMLILNH 100 (269)
T ss_dssp HHTSCSEEEECC
T ss_pred HhCCcccccccc
Confidence 124678888753
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=84.47 E-value=3.1 Score=32.44 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCC--cH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec---------
Q 021852 21 LFKDKVVLDVGAGT--GI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE--------- 85 (306)
Q Consensus 21 ~~~~~~VLDlG~G~--G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 85 (306)
..+|+++|--|+++ |+ ++..+++.|+ +|+.++.+ +..+.+++.....+- ......+..+..
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAEL 77 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHHh
Confidence 35789999999876 63 5667777887 79999987 666666666665543 334444443221
Q ss_pred -CCCceeeEEEEcc
Q 021852 86 -LPVTKVDIIISEW 98 (306)
Q Consensus 86 -~~~~~~D~iv~~~ 98 (306)
......|+++.+.
T Consensus 78 ~~~~~~~d~~v~~a 91 (258)
T d1qsga_ 78 GKVWPKFDGFVHSI 91 (258)
T ss_dssp HTTCSSEEEEEECC
T ss_pred hhcccccceEEEee
Confidence 2346789998764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=84.47 E-value=1.3 Score=35.30 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L----- 86 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 86 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++..+.+|+.+.. +
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999998873 3556667787 88888865 46666666676665 36888899986643 0
Q ss_pred CCceeeEEEEcc
Q 021852 87 PVTKVDIIISEW 98 (306)
Q Consensus 87 ~~~~~D~iv~~~ 98 (306)
..++.|++|.+.
T Consensus 82 ~~G~iDiLVnnA 93 (261)
T d1geea_ 82 EFGKLDVMINNA 93 (261)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 125799999874
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.74 E-value=1.2 Score=35.07 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+ .+++.++.+|+.+.. + .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 578999999999873 4566677887 89999987 5554443332 246788888886643 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.++.|++|.+.
T Consensus 78 ~g~idilinnA 88 (244)
T d1nffa_ 78 FGGLHVLVNNA 88 (244)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCeEEEECC
Confidence 25799999864
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.55 E-value=0.48 Score=38.55 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=39.2
Q ss_pred EEEEEceeeeec--CCCceeeEEEEcccccccCC------------cchHHHHHHHHhhcccCCeEEEe
Q 021852 74 ITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLF------------ENMLNTVLYARDKWLVDDGIVLP 128 (306)
Q Consensus 74 v~~~~~d~~~~~--~~~~~~D~iv~~~~~~~~~~------------~~~~~~~l~~~~~~L~p~G~~ip 128 (306)
=+++++|..++. ++++++|+|+.++. |.... ...+...+..+.++|+|+|.++.
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPP-Y~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i 80 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVV 80 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCC-CcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 378999987643 67899999999975 43221 11245678888999999999873
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=83.29 E-value=2.1 Score=35.81 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=42.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--------CCCEEEEEechHHHHHHHH-HHHHcCCCCeEEEEEceeeeecCCCcee
Q 021852 21 LFKDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQMANMAKQ-IVEANGFSNVITVLKGKIEEIELPVTKV 91 (306)
Q Consensus 21 ~~~~~~VLDlG~G~G~l~~~~a~~--------g~~~v~~iD~s~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 91 (306)
..+...|+|+|+|+|.++.-+.+. -..+++.+|.|+.+...++ .+. .. .++..+. ++.++ + ...
T Consensus 77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~--~~-~~i~w~~-~~~~~--~-~~~ 149 (365)
T d1zkda1 77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--GI-RNIHWHD-SFEDV--P-EGP 149 (365)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--TC-SSEEEES-SGGGS--C-CSS
T ss_pred CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc--cc-ccceecc-Chhhc--c-cCC
Confidence 334568999999999997655441 1336899999954444433 322 22 3455442 34433 2 233
Q ss_pred eEEEEccc
Q 021852 92 DIIISEWM 99 (306)
Q Consensus 92 D~iv~~~~ 99 (306)
-+|+++-+
T Consensus 150 g~iiaNE~ 157 (365)
T d1zkda1 150 AVILANEY 157 (365)
T ss_dssp EEEEEESS
T ss_pred eEEEeccc
Confidence 67888644
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.99 E-value=0.97 Score=34.29 Aligned_cols=97 Identities=20% Similarity=0.302 Sum_probs=61.3
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHc-------CCC--------------CeEEEEEce
Q 021852 25 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEAN-------GFS--------------NVITVLKGK 80 (306)
Q Consensus 25 ~~VLDlG~G~-G-~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~-------~~~--------------~~v~~~~~d 80 (306)
++|--||+|+ | .++..++.+|. .|+.+|.+ +.++.+++.++.+ +.. .++.... |
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-D 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-C
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-h
Confidence 4789999997 3 55667777876 89999998 7877776665432 221 1122221 1
Q ss_pred eeeecCCCceeeEEEEcccccccCCcchHHHHHHHHhhcccCCeEEEecC
Q 021852 81 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 130 (306)
Q Consensus 81 ~~~~~~~~~~~D~iv~~~~~~~~~~~~~~~~~l~~~~~~L~p~G~~ip~~ 130 (306)
..+. -..+|+|+=.. .........++..+.++++++.++.-+.
T Consensus 83 ~~~a---~~~ad~ViEav----~E~l~~K~~v~~~l~~~~~~~~ilasnT 125 (192)
T d1f0ya2 83 AASV---VHSTDLVVEAI----VENLKVKNELFKRLDKFAAEHTIFASNT 125 (192)
T ss_dssp HHHH---TTSCSEEEECC----CSCHHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred hHhh---hcccceehhhc----ccchhHHHHHHHHHhhhcccCceeeccC
Confidence 1111 24578888543 2233456788899999999998876333
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.86 E-value=1.4 Score=34.86 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.. .++.++.+|+.+.. + .
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 478999999998873 4556667787 89999987 5555443322 24778888886643 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (250)
T d1ydea1 77 FGRLDCVVNNA 87 (250)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEecc
Confidence 25799999874
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.06 E-value=1.3 Score=35.09 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=43.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHH---cCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeee
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAK---AGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI 84 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~---~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 84 (306)
.+|+++|--|+++|+ ++..+|+ .|+ +|+.++.+ +.++.+.+.+...+...++.++.+|+.+.
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~ 72 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE 72 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence 456777777888864 3444454 244 89999987 77777766666655556789999998664
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=81.65 E-value=2 Score=33.60 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=49.8
Q ss_pred EEEEEcCCCcH---HHHHHHHcCCC------EEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----------
Q 021852 26 VVLDVGAGTGI---LSLFCAKAGAA------HVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE---------- 85 (306)
Q Consensus 26 ~VLDlG~G~G~---l~~~~a~~g~~------~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 85 (306)
+||--|+++|+ ++..+++.|++ .|+.++.+ +-++.+.+.++..+ .++.++.+|+.+..
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 46778988873 35566777875 38888877 66676666666655 46888999987653
Q ss_pred CCCceeeEEEEcc
Q 021852 86 LPVTKVDIIISEW 98 (306)
Q Consensus 86 ~~~~~~D~iv~~~ 98 (306)
-.-++.|++|.+.
T Consensus 81 ~~~g~iDilvnnA 93 (240)
T d2bd0a1 81 ERYGHIDCLVNNA 93 (240)
T ss_dssp HHTSCCSEEEECC
T ss_pred HHcCCcceeeccc
Confidence 0135799999864
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=81.26 E-value=1.5 Score=34.78 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+|+++|--|+++| .++..+++.|+ +|+.+|.+ +-++.+.+ + +.+++.++.+|+.+.. + .
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~---~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAR---E--LGDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---T--TGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---H--hCCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 57899999999987 34666677787 89999987 54433322 2 2357889999987543 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
-++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (254)
T d1hdca_ 77 FGSVDGLVNNA 87 (254)
T ss_dssp HSCCCEEEECC
T ss_pred cCCccEEEecC
Confidence 25799999864
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=81.25 E-value=1.1 Score=31.42 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=36.1
Q ss_pred EEEEEcCCCcHHHHHHH----HcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec----CCCceeeEEEE
Q 021852 26 VVLDVGAGTGILSLFCA----KAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 96 (306)
Q Consensus 26 ~VLDlG~G~G~l~~~~a----~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~iv~ 96 (306)
+++-+|+| .++..++ +.|. .|+.+|.+ +.++.++. .+ ..++.+|..+.. ..-..+|.+++
T Consensus 2 ~~iIiG~G--~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 2 QFAVIGLG--RFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred EEEEECCC--HHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHH----hC----CcceeeecccchhhhccCCccccEEEE
Confidence 45566665 4444444 3555 89999998 66665532 22 346667876543 12356888776
Q ss_pred c
Q 021852 97 E 97 (306)
Q Consensus 97 ~ 97 (306)
.
T Consensus 71 ~ 71 (134)
T d2hmva1 71 A 71 (134)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.22 E-value=1.7 Score=34.41 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHcCCCCeEEEEEceeeeec-----C-----C
Q 021852 22 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 87 (306)
Q Consensus 22 ~~~~~VLDlG~G~G~---l~~~~a~~g~~~v~~iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 87 (306)
.+|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+ + .++..+.+|+.+.. + .
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 468899999988873 4556667787 89999987 5554443332 3 46788888886643 0 1
Q ss_pred CceeeEEEEcc
Q 021852 88 VTKVDIIISEW 98 (306)
Q Consensus 88 ~~~~D~iv~~~ 98 (306)
.++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (256)
T d1k2wa_ 77 WGSIDILVNNA 87 (256)
T ss_dssp HSCCCEEEECC
T ss_pred hCCccEEEeec
Confidence 25799999874
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=80.40 E-value=2.6 Score=32.97 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCEEEEEechHHHHHHHHHHHHcCCCCeEEEEEceeeeecC----------CC
Q 021852 22 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 88 (306)
Q Consensus 22 ~~~~~VLDlG~G~G---~l~~~~a~~g~~~v~~iD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~~ 88 (306)
.+|+++|--|+++| .++..+++.|+ +|+.+|.++. +.+++.++..+ .++.++.+|+.+..- .-
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~-~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA-PEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC-HHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch-HHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57899999998887 34556667787 8999997621 22333344444 468899999866530 12
Q ss_pred ceeeEEEEcc
Q 021852 89 TKVDIIISEW 98 (306)
Q Consensus 89 ~~~D~iv~~~ 98 (306)
++.|++|.+.
T Consensus 79 G~iDilVnnA 88 (247)
T d2ew8a1 79 GRCDILVNNA 88 (247)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 5799999874
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=80.14 E-value=1.4 Score=29.23 Aligned_cols=66 Identities=12% Similarity=0.233 Sum_probs=39.9
Q ss_pred CCCCCEEEEEcC-CCc--HHHHHHHHcCCCEEEEEech--HHHHHHHHHHHHcCCCCeEEEEEceeeeecCCCceeeEEE
Q 021852 21 LFKDKVVLDVGA-GTG--ILSLFCAKAGAAHVYAVECS--QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 95 (306)
Q Consensus 21 ~~~~~~VLDlG~-G~G--~l~~~~a~~g~~~v~~iD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~iv 95 (306)
....+++.=+|- |+| .++..+.+.|. +|+|.|.. +..+.. .++|. .+..+...+. + ...|+||
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L----~~~Gi----~v~~g~~~~~-i--~~~d~vV 72 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRL----AQAGA----KIYIGHAEEH-I--EGASVVV 72 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHH----HHTTC----EEEESCCGGG-G--TTCSEEE
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHH----HHCCC----eEEECCcccc-C--CCCCEEE
Confidence 345567888874 455 55667777888 99999964 444433 34453 4444444332 2 3478888
Q ss_pred Ecc
Q 021852 96 SEW 98 (306)
Q Consensus 96 ~~~ 98 (306)
...
T Consensus 73 ~S~ 75 (96)
T d1p3da1 73 VSS 75 (96)
T ss_dssp ECT
T ss_pred ECC
Confidence 753
|