Citrus Sinensis ID: 021859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSSSVKWMSSKMRLMKKMMYSSPDAAAMQKLEDHQKQPPSSSLEPDNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAADDTSSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRGKKKLCSFEDLTLILSKNNSSALQRVFPQEEKEAAILLMALSYGLVHG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHcccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEccccccccccccccccEcccccccccccccHHHcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHcHHHHHHHHHHHHccccccccccccccccccHHccccccccccccccccccccccccccccccccccEEHHHccEEEcccccHHHHEccccHHHHHHHHHHHHHcccEcc
Coil and Loop (DISEMBL)
mtpnyhlspvtpfplelkedqllnlnqppsssspaschnffepvqreggfyyresvllrhpKEVRILYSqaagscdhpgpavmdesgsestglklsmssekeerndqnqsensssVKWMSSKMRLMKKMMYSSPDAAAMQKledhqkqppssslepdngnnnnntntiRVCAdcnttktplwrsgprgpkslcnacgIRQRKARRAMAAAAANGTAVQLaaddtssnkkksktprpsnnnsclpfkkrckynsnspsrgkkklcsfEDLTLILSKNNSSALQRVFPQEEKEAAILLMALSYGLVHG
Flexible Loop (DISEMBL)
mtpnyhlspvTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMssekeerndqnqsensssvkwMSSKMRLMKKMMYSSPDAAAMQKLEDHQKqppssslepdngnnnnNTNTIRVCADCNTTktplwrsgprgpkslcNACGIRQRKARRAMAAAAANGTavqlaaddtssnkkksktprpsnnnsclpfkkrckynsnspsrgkkKLCSFEDLTLILSKNNSSALQRVFPQEEKEAAILLMALSYGLVHG
Low Complexity Region (SEG)
MTPNYHLSPVTPFPLELKEDQLLNLNQppsssspasCHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSSSVkwmsskmrlmkkmmyssPDAAAMQKLEDHQKQPPSSSLEPDngnnnnntntIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQrkarramaaaaangtavqlaaDDtssnkkksktprpsnnnsCLPFKKRCKYNSNSPSRGKKKLCSFEDLTLILSKNNSSALQRVFPQEEKEAAILLMALSYGLVHG
Disordered region (IsUnstruct)
*************************************HNFFEPVQREGGFYYRESVLLRHPKEVRILYSQA************************************************************************************************IRVCADCNTTKTPLWR********LCNACGI****************************************************************LCSFEDLTLILS*********VF*****EAAILLMALSYGLV**
Disordered Region (DISOPRED)
***************************************************************************************************************************************************************************ADCNTTKTPLWRSGPRGPKSLCNACGIRQ*******************************************************************************************AAILLMALSYGLVHG
Disordered Region (DISEMBL)
********PVTPFPLELKEDQLLNLN**********CHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGP*************************************WMSSKMRLMKKMMYSSPD*********************DNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGI*****************************************NSCLPFKKRCKY********KKKLCSFEDLTLILSKNNSSALQRVFPQEEKEAAILLMALSYGLVHG
Disordered Region (DISPRO)
*TPNYHLSPVTPFPLELKEDQLLNLNQ*****SPASC*N***PVQREGGFYYRESVLLRHPK***I***************************************************************************************************NTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRA*******************************************************KLCSFEDLTLILSKNNSSALQRVFPQEEKEAAILLMALSYGLVHG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSSSVKWMSSKMRLMKKMMYSSPDAAAMQKLEDHQKQPPSSSLEPDNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAADDTSSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRGKKKLCSFEDLTLILSKNNSSALQRVFPQEEKEAAILLMALSYGLVHG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
Q9SZI6	352	Putative GATA transcripti	yes	no	0.666	0.579	0.433	2e-34
Q5HZ36	398	GATA transcription factor	no	no	0.470	0.361	0.362	4e-19
Q9FJ10	139	GATA transcription factor	no	no	0.366	0.805	0.397	8e-17
Q8LG10	149	GATA transcription factor	no	no	0.352	0.724	0.362	1e-13
Q8LC59	120	GATA transcription factor	no	no	0.133	0.341	0.731	9e-13
Q9LIB5	190	GATA transcription factor	no	no	0.411	0.663	0.351	2e-12
Q8LC79	295	GATA transcription factor	no	no	0.166	0.172	0.653	4e-12
Q6QPM2	211	GATA transcription factor	no	no	0.153	0.222	0.666	3e-11
Q9ZPX0	208	GATA transcription factor	no	no	0.130	0.192	0.731	8e-11
Q6DBP8	303	GATA transcription factor	no	no	0.140	0.141	0.581	9e-10

>sp|Q9SZI6|GAT22_ARATH Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/249 (43%), Positives = 144/249 (57%), Gaps = 45/249 (18%)

Query: 91  TGLKLSMSSEKEERNDQNQSE----------NSSSVKWMSSKMRLMKK--MMYSSPDAAA 138
           T LKL++   K++ N Q+Q++           ++S+KW+SSK+RLMKK   + ++ D++ 
Sbjct: 116 TRLKLTI---KKKDNHQDQTDLPQSPIKDMTGTNSLKWISSKVRLMKKKKAIITTSDSS- 171

Query: 139 MQKLEDHQKQPPSSSL---EPDNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNA 195
               + H     SS+L   E  NG NN+    IR+C+DCNTTKTPLWRSGPRGPKSLCNA
Sbjct: 172 ----KQHTNNDQSSNLSNSERQNGYNNDCV--IRICSDCNTTKTPLWRSGPRGPKSLCNA 225

Query: 196 CGIRQRKARRAMAAAAANGTAVQLA----------ADDTSSNKKKSKTPRPSNNNSC--- 242
           CGIRQRKARRA  A A       ++           +  S+   K  +P P   N+C   
Sbjct: 226 CGIRQRKARRAAMATATATAVSGVSPPVMKKKMQNKNKISNGVYKILSPLPLKVNTCKRM 285

Query: 243 -----LPFKKRCKYNSNSPSRGKKKLCSFEDLTLILSKNNSSALQRVFPQEEKEAAILLM 297
                    +  +  SNS          F+DL L+LSK  SSA Q+VFPQ+EKEAAILLM
Sbjct: 286 ITLEETALAEDLETQSNSTMLSSSDNIYFDDLALLLSK--SSAYQQVFPQDEKEAAILLM 343

Query: 298 ALSYGLVHG 306
           ALS+G+VHG
Sbjct: 344 ALSHGMVHG 352

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5HZ36|GAT21_ARATH GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 93/193 (48%), Gaps = 49/193 (25%)

Query: 51  YYRESVLLRHPKEVRILYSQAAGS-CDHPGPAVMDESGSESTGLKLSMSSEKEERN---- 105
           Y+ + + L  P + ++  +    S CDH  P        + T LKL++  +  E      
Sbjct: 79  YHADHLHLSQPLKAKMFVANGGSSACDHMVP-------KKETRLKLTIRKKDHEDQPHPL 131

Query: 106 DQNQSE-NSSSVKW-MSSKMRLMKKMMYSSPDAAAM-----QKLEDHQKQPPSSSLEPD- 157
            QN ++ +S S KW MS KMRL+KK + ++            K  DH      ++ + D 
Sbjct: 132 HQNPTKPDSDSDKWLMSPKMRLIKKTITNNKQLIDQTNNNNHKESDHYPLNHKTNFDEDH 191

Query: 158 ----------------------------NGNNNNNTNTIRVCADCNTTKTPLWRSGPRGP 189
                                       NG +NNN   IRVC+DCNTTKTPLWRSGPRGP
Sbjct: 192 HEDLNFKNVLTRKTTAATTENRYNTINENGYSNNN-GVIRVCSDCNTTKTPLWRSGPRGP 250

Query: 190 KSLCNACGIRQRK 202
           KSLCNACGIRQRK
Sbjct: 251 KSLCNACGIRQRK 263

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ10|GAT16_ARATH GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 71/146 (48%), Gaps = 34/146 (23%)

Query: 160 NNNNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQL 219
           NN +  +  + CADC T+KTPLWR GP GPKSLCNACGIR RK RR              
Sbjct: 27  NNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG------------- 73

Query: 220 AADDTSSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRGKKKLCSFEDLTLILSKNNSS 279
               T  NKK  K+     N     F +  K              S  DL   + K ++ 
Sbjct: 74  ---GTEDNKKLKKSSSGGGNR---KFGESLKQ-------------SLMDLG--IRKRSTV 112

Query: 280 ALQRVFPQEEKEAAILLMALSYGLVH 305
             QR    EE++AA+LLMALSYG V+
Sbjct: 113 EKQRQKLGEEEQAAVLLMALSYGSVY 138

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LG10|GAT15_ARATH GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 30/138 (21%)

Query: 165 TNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAADDT 224
           +N  + CA C T+KTPLWR GP GPKSLCNACGIR RK RR             L ++ +
Sbjct: 37  SNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRT------------LISNRS 84

Query: 225 SSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRGKKKLCSFEDLTLILSKNNSSALQRV 284
              KKKS    P   +S                  K++L       +++ ++ +   +R 
Sbjct: 85  EDKKKKSHNRNPKFGDSL-----------------KQRLMEL-GREVMMQRSTAENQRRN 126

Query: 285 FPQEEKEAAILLMALSYG 302
              EE++AA+LLMALSY 
Sbjct: 127 KLGEEEQAAVLLMALSYA 144

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC59|GAT23_ARATH GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 166 NTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRA 206
            TIR C++C TTKTP+WR GP GPKSLCNACGIR RK RR+
Sbjct: 23  GTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRS 63

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIB5|GAT17_ARATH GATA transcription factor 17 OS=Arabidopsis thaliana GN=GATA17 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 39/165 (23%)

Query: 166 NTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAADDTS 225
           +T R C DC T +TPLWR GP GPKSLCNACGI+ RK R+A         A+ + +++  
Sbjct: 39  DTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQA---------ALGMRSEEKK 89

Query: 226 SNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRGKK------KLCS-------------- 265
            N+K +      NN+  L  +   KY  N    GK       K+C+              
Sbjct: 90  KNRKSN-----CNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVS 144

Query: 266 -FEDLTLILSKNNSSALQ--RVFPQ--EEKEAAILLMALSYGLVH 305
            F DL   +     SA++  R++ +  EE+ AA+LLMALS   V+
Sbjct: 145 KFLDLGFKVPVMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVY 189

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC79|GAT18_ARATH GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 38/52 (73%), Gaps = 1/52 (1%)

Query: 169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLA 220
           R CA+C+TT TPLWR+GPRGPKSLCNACGIR +K  R   AA  N T V  A
Sbjct: 152 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAATGN-TVVGAA 202

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6QPM2|GAT19_ARATH GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTA 216
           R CA+C+TT TPLWR+GPRGPKSLCNACGIR +K  R  A+ A N T+
Sbjct: 75  RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER-RASTARNSTS 121

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPX0|GAT20_ARATH GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 34/41 (82%), Gaps = 1/41 (2%)

Query: 169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK-ARRAMA 208
           R CA C+TT TPLWR+GP+GPKSLCNACGIR +K  RRA A
Sbjct: 92  RRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRATA 132

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 30/43 (69%)

Query: 162 NNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 204
           +N+   +R C  C TTKTP WR GP GPK+LCNACG+R R  R
Sbjct: 213 SNSDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGR 255

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
255546095	312	hypothetical protein RCOM_1046780 [Ricin	0.957	0.939	0.489	4e-56
225444922	309	PREDICTED: uncharacterized protein LOC10	0.954	0.944	0.507	6e-46
356556282	315	PREDICTED: putative GATA transcription f	0.941	0.914	0.433	1e-45
302398801	359	GATA domain class transcription factor [	0.960	0.818	0.450	2e-42
302398795	342	GATA domain class transcription factor [	0.954	0.853	0.441	2e-40
356564796	322	PREDICTED: putative GATA transcription f	0.954	0.906	0.411	4e-39
356550705	314	PREDICTED: GATA transcription factor 21-	0.931	0.907	0.398	1e-38
225429550	306	PREDICTED: putative GATA transcription f	0.918	0.918	0.428	1e-37
356554076	306	PREDICTED: putative GATA transcription f	0.905	0.905	0.384	2e-35
356532708	337	PREDICTED: GATA transcription factor 21-	0.937	0.851	0.396	6e-35

>gi|255546095|ref|XP_002514107.1| hypothetical protein RCOM_1046780 [Ricinus communis] gi|223546563|gb|EEF48061.1| hypothetical protein RCOM_1046780 [Ricinus communis]

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 159/325 (48%), Positives = 203/325 (62%), Gaps = 32/325 (9%)

Query: 1   MTPNYHLSPVTPFPLELKEDQ----LLNLNQPPSSSSPASCHN----FFEPVQREGGFYY 52
           MTP YH S   PF ++L EDQ    L+  ++  +  + +S       F  P Q E G+Y+
Sbjct: 1   MTPTYH-SSFPPFTIDLNEDQHHHQLIFCSKTTTEDASSSSSISYPIFINPPQEEVGYYH 59

Query: 53  RESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSEN 112
           +E   L H +EV  +Y+    S DH      +E+G E     LS+  ++++        +
Sbjct: 60  KELQPLHH-QEVDNIYASHGRSWDHRIIKNENENGQE-----LSVCKKEDKSTSIEDQRD 113

Query: 113 SSSVKWMSSKMRLMKKMMYS------SPDAAAMQKLEDHQKQPPSSSLEPDNGNNN---N 163
           +SSVKWMSSKMRLM+KMM +      +   ++M KLED +K   S  L+ D  + N   N
Sbjct: 114 NSSVKWMSSKMRLMRKMMTTDQTVNTTQHTSSMHKLEDKEKSR-SLPLQDDYSSKNLSDN 172

Query: 164 NTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAADD 223
           + NTIRVC+DCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRA+AAA A+      A D 
Sbjct: 173 SNNTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAAAQASANGTIFAPDT 232

Query: 224 TSSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRG-KKKLCSFEDL-TLILSKNNSSAL 281
            +    K +      NNS LPFKKRCK+ +   SRG +KKLC FEDL + ILSKN  SA 
Sbjct: 233 AAMKTNKVQNKEKRTNNSHLPFKKRCKFTAQ--SRGSRKKLC-FEDLSSTILSKN--SAF 287

Query: 282 QRVFPQEEKEAAILLMALSYGLVHG 306
           Q++FPQ+EKEAAILLMALSYGLVHG
Sbjct: 288 QQLFPQDEKEAAILLMALSYGLVHG 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444922|ref|XP_002282173.1| PREDICTED: uncharacterized protein LOC100261004 [Vitis vinifera] gi|297738668|emb|CBI27913.3| unnamed protein product [Vitis vinifera]

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 164/323 (50%), Positives = 195/323 (60%), Gaps = 31/323 (9%)

Query: 1   MTPNYHLSPVTPFP-LELKEDQLLNLNQPP------SSSSPASCHNFFEPVQREGGFYYR 53
           MTPNY  SP  P   L+L EDQ   L   P      SSSS  +C  FF P + +GG +YR
Sbjct: 1   MTPNYLNSPPPPPFPLQLNEDQHHQLLFSPKPQPSSSSSSSLTCPIFFSPTKEQGGCHYR 60

Query: 54  ESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENS 113
           +    +  +E    +    GS DHP      ES S++ GLKL++   K E  ++N SEN 
Sbjct: 61  DLHQAQPQQEAHDKFVFRGGSYDHP----TLESESDN-GLKLTI--WKTEDRNENHSENG 113

Query: 114 SSVKWMSSKMRLMKKMMYSSPDAAAMQK-------LEDHQKQ--PPSSSLEPDNGNNNNN 164
           S VKWMSSKMR+M+KMM S  D    QK         DH++Q  P  +     N +N N+
Sbjct: 114 S-VKWMSSKMRVMQKMMIS--DQTGAQKPSNTALNFGDHKQQSLPSETDYNSINSSNINS 170

Query: 165 TNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAADDT 224
            NTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAA      L  +  
Sbjct: 171 NNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAATANGTILPTNTA 230

Query: 225 SSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRGKKKLCSFEDLTLILSKNNSSALQRV 284
            +  K     + S+N     +KKRCK  + +PS   KKLC FED T+ LSKN  SA  RV
Sbjct: 231 PTKTKAKHKDKKSSNGHVSHYKKRCKL-AAAPSCETKKLC-FEDFTISLSKN--SAFHRV 286

Query: 285 FPQEE-KEAAILLMALSYGLVHG 306
           F Q+E KEAAILLMALS GLVHG
Sbjct: 287 FLQDEIKEAAILLMALSCGLVHG 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556282|ref|XP_003546455.1| PREDICTED: putative GATA transcription factor 22-like [Glycine max]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 141/325 (43%), Positives = 191/325 (58%), Gaps = 37/325 (11%)

Query: 1   MTPNYHLSPVTPFPLELKEDQLLNL----NQPPSSSSPASCHNFFEPVQREGGF--YYRE 54
           M P Y  S  +P P++L ED   +L    +Q   SSS  S    F P Q +GG    ++ 
Sbjct: 1   MIPTYRYSVSSPMPIDLNEDHTHHLFSTNHQASCSSSSLSYSILFNPDQDQGGSCSDWKS 60

Query: 55  SVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSS 114
             L    +  +I+ S         G +  DE+ S+   LKL +  +KE++ +  Q E++S
Sbjct: 61  KHLQSDEEAQKIVPSS--------GLSEKDENKSD---LKLRVW-KKEDKCENFQGEDNS 108

Query: 115 SVKWMSSKMRLMKKMMYS----SPDAAAM----QKLEDHQKQPPSSSLEPDNGNNNNNTN 166
           + KWM  KMR+M+++M S    S D   M    QK++  +K  P S L  D+ N N+++N
Sbjct: 109 T-KWMPLKMRMMRRLMVSDQTGSDDTEGMISNSQKIKYEEKNSPLSPLGTDDSNYNSSSN 167

Query: 167 ----TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAA-ANGTAVQLAA 221
               T+RVC+DC+TTKTPLWRSGP+GPKSLCNACGIRQRK RRA+AAAA +NGT      
Sbjct: 168 HSNITVRVCSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKVRRAIAAAATSNGTN---PV 224

Query: 222 DDTSSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRGKKKLCSFEDLTLILSKNNSSAL 281
           +   S  KK  T       S     ++ K N    +R +K+  +FEDLT+ LSKN   AL
Sbjct: 225 EAEKSQVKKGNTLHSKGMKSKTEGAQQMKKNRKLGARYRKRFGAFEDLTVRLSKN--FAL 282

Query: 282 QRVFPQEEKEAAILLMALSYGLVHG 306
           Q+VFPQ+EKEAAILLMALSYGL+HG
Sbjct: 283 QQVFPQDEKEAAILLMALSYGLLHG 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398801|gb|ADL36695.1| GATA domain class transcription factor [Malus x domestica]

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 165/366 (45%), Positives = 196/366 (53%), Gaps = 72/366 (19%)

Query: 3   PNYH-LSPVTPFPLELKEDQ----------LLNL--NQPPSSSSPASCHNFFEPVQREGG 49
           P YH LSP +PF LEL  D           L NL      SSSS  S   F  P Q +G 
Sbjct: 4   PPYHNLSPPSPFTLELSGDHHGDHDLQYHHLFNLEPQASFSSSSSLSSALFLTPAQVQG- 62

Query: 50  FYYRESVLLRHPKEVRILYSQA-------AGSCDHPGPAVMDESGSESTGLKLSMSSEKE 102
              R     R P + +    +A        GS DH   A+ +E GS  T LKLS+S    
Sbjct: 63  ---RSDDHYREPHQFQFQLLEADHNIVPHGGSHDHDHQAIENEGGS-GTVLKLSISKNGA 118

Query: 103 ERNDQ---NQSENSSSVKWMSSKMRLMKKMMYSSPDAAAM----------------QKLE 143
             N     +   ++SSVKWMSSKMR+M+KM  S+PD  +                  K E
Sbjct: 119 VGNGNPGTDHETSTSSVKWMSSKMRMMRKM--SNPDQTSSSSTSSDDKPISMKLSSHKFE 176

Query: 144 DHQKQPPSSSLEPD-------NGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNAC 196
           + + Q PSS L  D       + NN NN   IRVC+DCNTTKTPLWRSGPRGPKSLCNAC
Sbjct: 177 EQKLQHPSSQLGADMISCSNNSSNNMNNVPIIRVCSDCNTTKTPLWRSGPRGPKSLCNAC 236

Query: 197 GIRQRK--ARRAMAAAAANGTAVQLAADDTSSNKKKSKTPRPSNNNSCLPFKKRCKYN-- 252
           GIRQRK     A AAAAA+GT + +AA    S+K + K  + S  +S +PFKKR  YN  
Sbjct: 237 GIRQRKARRAMAAAAAAASGTTLTVAAPSMKSSKVQPKANK-SRVSSTVPFKKR-PYNKL 294

Query: 253 --SNSPSRGKKKLCSFEDLTLILSKNNSSA----------LQRVFPQEEKEAAILLMALS 300
             S S     KKLC FED T+ +  N+SS           LQRVFPQ+EKEAAILLMALS
Sbjct: 295 SSSPSSRGKSKKLC-FEDFTISMKNNSSSGNPTAATTTTALQRVFPQDEKEAAILLMALS 353

Query: 301 YGLVHG 306
            GLVHG
Sbjct: 354 CGLVHG 359

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398795|gb|ADL36692.1| GATA domain class transcription factor [Malus x domestica]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 155/351 (44%), Positives = 195/351 (55%), Gaps = 59/351 (16%)

Query: 3   PNYH-LSPVTPFPLELKEDQ------LLNLNQPPSSSSPASCHNFFEPVQREGGFYYRES 55
           P YH LSP +PF LEL  D       L NL    S SS  S   F  P Q +     R  
Sbjct: 4   PPYHNLSPPSPFNLELSGDHDLQYHHLFNLEPQTSFSSSLSSPLFLTPAQVQA----RSD 59

Query: 56  VLLRHPKEVRILYSQA-------AGSCDHPGPAVMDESGSESTGLKLSMSSEKEERN--- 105
              R P++ +    +A        GS DH   A+ +E G+  T LKLS+S    + +   
Sbjct: 60  DHYRKPQQFQFQLLEADHNIVPYGGSRDHDHQAIENEGGN-GTVLKLSISKNGADGSGNP 118

Query: 106 DQNQSENSSSVKWMSSKMRLMKKMMYSSPDAA----------------AMQKLEDHQKQP 149
             +   N+SSVKWMSSK+R+M KM  S+PD                  +  K E+ + Q 
Sbjct: 119 STDHEVNTSSVKWMSSKIRMMWKM--SNPDHTSSSSNSSGDKPISMKLSSHKFEEQKPQH 176

Query: 150 PSSSLEPD-------NGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202
           PSS L  +       + NN ++   IRVC+DC+TTKTPLWRSGPRGPKSLCNACGIRQRK
Sbjct: 177 PSSQLGAEMISCSNNSSNNMSSLPIIRVCSDCSTTKTPLWRSGPRGPKSLCNACGIRQRK 236

Query: 203 ----ARRAMAAAAANGTAVQLAADDTSSNKKKSKTPRPSNNNSCLPFKKR--CKYNSNSP 256
                  A AAAAA+GT + +AA    S+K + K  + S  +S +PFKKR   K  S+  
Sbjct: 237 ARRAMAAAAAAAAASGTTLTVAAPSMKSSKVQHKDNK-SRVSSTVPFKKRPYNKLTSSPS 295

Query: 257 SRGK-KKLCSFEDLTLILSKNNSSALQRVFPQEEKEAAILLMALSYGLVHG 306
           SRGK KKLC FE  T   +   ++ALQRVFPQ+E+EAAILLMALS GLVHG
Sbjct: 296 SRGKSKKLC-FEAPT---AAAATTALQRVFPQDEREAAILLMALSCGLVHG 342

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564796|ref|XP_003550634.1| PREDICTED: putative GATA transcription factor 22-like [Glycine max]

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 138/335 (41%), Positives = 179/335 (53%), Gaps = 43/335 (12%)

Query: 1   MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPV-------QREGGFYYR 53
           M P Y  S  +  PL+L EDQ      P    S +       P+        +E   YY 
Sbjct: 1   MIPAYRHSVSSVMPLDLNEDQNHEFFSPTHHPSSSFSSLSSYPILFNPPNQDQEARSYYW 60

Query: 54  E---SVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQS 110
           E     L  H +E   +   ++GS DH        S +ES   K ++  + EERN+  +S
Sbjct: 61  EPTKQYLPSHEEETEKIIP-SSGSWDH--------SVAESEHNKATVWKKAEERNENLES 111

Query: 111 --ENSSSVKWMSSKMRLMKKMM-------YSSPDAAAMQKLEDHQKQPPSSSLEPDNGNN 161
                 S+KWM +KMR+M+KM+       Y++ D     K +D QKQ  SS L  DN ++
Sbjct: 112 VAAEDGSLKWMPAKMRIMRKMLVSDQTDTYTNSDNNTTHKFDD-QKQQLSSPLGTDNSSS 170

Query: 162 NNNTN----TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK----ARRAMAAAAAN 213
           NN +N    T+RVC+DC+TTKTPLWRSGPRGPKSLCNACGIRQRK       A A+A+ N
Sbjct: 171 NNYSNHSNNTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAASASGN 230

Query: 214 GTAVQLAADDTSS-NKKKSKTPRPSNNNSCLPFKKRCKYNSNS--PSRGKKKLCSFEDLT 270
           GT +  A       NK + K  + +        KK+ K    S   S+ + K   FEDLT
Sbjct: 231 GTVIVEAKKSVKGRNKLQKKKEKKTRTEGAAQMKKKRKLGVGSAKASQSRNKF-GFEDLT 289

Query: 271 LILSKNNSSALQRVFPQEEKEAAILLMALSYGLVH 305
           L L KN   A+ +VFPQ+EKEAAILLMALSYGLVH
Sbjct: 290 LRLRKN--LAMHQVFPQDEKEAAILLMALSYGLVH 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550705|ref|XP_003543725.1| PREDICTED: GATA transcription factor 21-like [Glycine max]

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/334 (39%), Positives = 175/334 (52%), Gaps = 49/334 (14%)

Query: 1   MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQREGGFYYRES----V 56
           M P Y  S  +  PL+L EDQ                H FF P+      +   S    +
Sbjct: 1   MIPAYRHSVSSVMPLDLNEDQ---------------NHEFFSPIHHPSSSFSSLSSSYPI 45

Query: 57  LLRHPKEVRILYSQAAGSCDH------PGPAVMDESGS-----ESTGLKLSMSSEKEERN 105
           L   P + +   S    +  H          ++  SGS     E +  K+++   KEERN
Sbjct: 46  LFNPPNQDQEARSYDWETTKHLPSHEEEAEKIIPTSGSWGHSVEESEHKVTVW-RKEERN 104

Query: 106 DQNQSENSSSVKWMSSKMRLMKKMMYS------SPDAAAMQKLEDHQKQPPSSSLEPDNG 159
            +N +E+ S VKWM SKMR+M+KM+ S      + D     K +DH++Q  S     DN 
Sbjct: 105 -ENLAEDGS-VKWMPSKMRIMRKMLVSNQTDAYTSDNNTTHKFDDHKQQLSSPLGIDDNS 162

Query: 160 NNN----NNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAA---- 211
           +NN    +N + +RVC+DC+TTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAA    
Sbjct: 163 SNNYSDKSNNSIVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAAL 222

Query: 212 ANGTAVQLAADDTSSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRGKKKLCSFEDLTL 271
            +G  +  A       K + K  + +        K + K    + +   +    FEDLTL
Sbjct: 223 GDGAVIVEAEKSVKGKKLQKKKEKKTRIEGAAQMKMKRKLGVGAKASQSRNKFGFEDLTL 282

Query: 272 ILSKNNSSALQRVFPQEEKEAAILLMALSYGLVH 305
            L KN   A+ +VFPQ+EKEAAILLMALSYGLVH
Sbjct: 283 RLRKN--LAMHQVFPQDEKEAAILLMALSYGLVH 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429550|ref|XP_002279283.1| PREDICTED: putative GATA transcription factor 22 [Vitis vinifera] gi|296081660|emb|CBI20665.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 141/329 (42%), Positives = 180/329 (54%), Gaps = 48/329 (14%)

Query: 1   MTPNY-HLSPVTPFP-LELKED----QLLNLNQPPS--SSSPASCHNFF-EPVQREGGFY 51
           MTP + + S  +PFP LELKED    QLL    PPS  +SS   C +FF    Q + G +
Sbjct: 1   MTPVFLNTSSSSPFPALELKEDHQHFQLLFSTNPPSYQASSSHPCPSFFNSSTQSQRGDH 60

Query: 52  YRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSE 111
                     K+ + +     G       + + +  ++       +S  K+E  D+    
Sbjct: 61  SPRDPQQHEDKDDKYISHGGCGESQVFSSSSLLQPMADDNKSSHKLSVFKKEEGDEG--- 117

Query: 112 NSSSVKWMSSKMRLMKKMMYSSPDAAAM-QKLEDHQKQPPSSSLEPDNGNNNNNTNTIRV 170
           N S+ KWMSSKMRLM+KMM S    A + QK+EDHQ+     ++   N +NN +   IRV
Sbjct: 118 NKSTEKWMSSKMRLMRKMMNSDCTTAKIEQKVEDHQQW---DNINEFNSSNNTSNIPIRV 174

Query: 171 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRK---ARRAMAAAAANGTAVQLAADDTSSN 227
           C+DCNTTKTPLWRSGPRGPKSLCNACGIRQRK   A  A AAAAANGTAV     + S  
Sbjct: 175 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAAANGTAV---GTEISPM 231

Query: 228 KKKSKTPRPSNNNSCLPFKKRCKYNSN-----------SPSRGKKKLCSFEDLTLILSKN 276
           K K            LP K++  + SN            P   +KKLC FED T  + KN
Sbjct: 232 KMK------------LPNKEKKMHTSNVGQQKKLCKPPCPPPTEKKLC-FEDFTSSICKN 278

Query: 277 NSSALQRVFPQEEKEAAILLMALSYGLVH 305
             S  +RVFP++E+EAAILLMALS  LV+
Sbjct: 279 --SGFRRVFPRDEEEAAILLMALSCDLVY 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554076|ref|XP_003545375.1| PREDICTED: putative GATA transcription factor 22-like [Glycine max]

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 174/333 (52%), Gaps = 56/333 (16%)

Query: 1   MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQRE---GGF---YYRE 54
           MTP Y L+P  P  ++  ++QL N++  P++    +  N F+P Q     GG    Y ++
Sbjct: 1   MTP-YSLNPPGP-SIQAGQNQLFNIS--PNNQDCRTFFNIFDPRQTSIEIGGLRENYRQD 56

Query: 55  SVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSS 114
             ++ H        S    S   P   VM +  S +   + ++ SE+E +N+ + S N  
Sbjct: 57  DKMILHDGSSSNCNSSFNIS---PETVVMVDPLSSACDRR-NLPSEEESKNNDHGSGN-- 110

Query: 115 SVKWMSSKMRLMKKMMY------------SSPDAAAMQKLEDH---QKQPPSSSLEPDNG 159
             KWMSSKMRLMKKMM             SSP     Q LE     Q+ P          
Sbjct: 111 --KWMSSKMRLMKKMMRPSISPTTDKAINSSPRFQNHQGLESRRYSQRSP---------- 158

Query: 160 NNNNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQL 219
            NNN ++T RVC+DCNT+ TPLWR+GP+GPKSLCNACGIRQRKARRAM A AANG    +
Sbjct: 159 RNNNGSSTPRVCSDCNTSTTPLWRTGPKGPKSLCNACGIRQRKARRAM-AEAANGLVTPI 217

Query: 220 AADDTSSNKKKSKTPRPSNNNSCLPFKKRCKYNSN------SPSRGKKKLCSFEDLTLIL 273
           A + T  + K+ K    S  N    FK + K  +         S G +KL  F +  + L
Sbjct: 218 ACEKTRLHNKEKK----SRMNHFAQFKNKYKSTTTTTTTTVGSSEGVRKLEYFNNFAISL 273

Query: 274 SKNNSSALQRVFPQEE-KEAAILLMALSYGLVH 305
             NNS   +++FP++E  EAA+LLM LS G VH
Sbjct: 274 RSNNSD-FEQMFPRDEVAEAALLLMDLSCGFVH 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532708|ref|XP_003534913.1| PREDICTED: GATA transcription factor 21-like [Glycine max]

 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 182/320 (56%), Gaps = 33/320 (10%)

Query: 1   MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHN----FFEP-VQREGG-FYYRE 54
           M P Y  S  +P P++L ED   ++      +S +S        F P  Q +GG   + E
Sbjct: 1   MIPTYRYSVSSPMPIDLNEDHTHHVFSTSHQASSSSSSLSFSILFNPDHQGQGGSCCHWE 60

Query: 55  SVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSS 114
           S  L+  +E + +   ++ S +HP    + E     + LKL +  +KE++ +  Q E++S
Sbjct: 61  SKHLQSDEEAQKIVP-SSESWEHP----VSEKDENRSDLKLRVW-KKEDKCENFQVEDNS 114

Query: 115 SVKWMSSKMRLMKKMMYSSP---DAAAM----QKLEDHQKQPPSSSLEPDNGNN-----N 162
           + KWM  KMR+M++MM S     D   M    +++++ +K PP + L  D+ NN     N
Sbjct: 115 T-KWMPLKMRMMRRMMVSDQTGFDTEGMISNSKQIKNEEKNPPLTPLGTDDSNNYNSSAN 173

Query: 163 NNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAA-ANGT-AVQLA 220
           ++  T+RVC+DC+TTKTPLWRSGP+GPK+LCNACGIRQRKARRA+A AA ANG   V+  
Sbjct: 174 HSKITVRVCSDCHTTKTPLWRSGPKGPKTLCNACGIRQRKARRAIAVAATANGMNPVEAE 233

Query: 221 ADDTSSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRGKKKLCSFEDLTLILSKNNSSA 280
                   K       S        KK+ K      ++ +K+  +FEDLT+ LSKN   A
Sbjct: 234 KSQVKKGNKLHSKGMKSKTKGAPHMKKKRKLG----AKYRKRFGAFEDLTVRLSKN--LA 287

Query: 281 LQRVFPQEEKEAAILLMALS 300
           LQ+VFP +EKEAAILLMALS
Sbjct: 288 LQKVFPPDEKEAAILLMALS 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TAIR|locus:2170277	398	GNC "GATA, nitrate-inducible,	0.107	0.082	0.969	2.9e-29
TAIR|locus:2120845	352	CGA1 "cytokinin-responsive gat	0.107	0.093	0.939	6.5e-28
TAIR|locus:2093678	190	GATA17 "GATA transcription fac	0.101	0.163	0.741	1.7e-19
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.101	0.223	0.806	2.3e-17
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.094	0.194	0.827	3.4e-15
TAIR|locus:504955441	197	AT4G16141 [Arabidopsis thalian	0.101	0.157	0.709	3.9e-15
TAIR|locus:2148558	120	GATA23 "GATA transcription fac	0.104	0.266	0.781	7.2e-15
TAIR|locus:2115195	211	GATA19 "GATA transcription fac	0.101	0.146	0.838	2.2e-11
TAIR|locus:2062095	208	GATA20 "GATA transcription fac	0.101	0.149	0.806	5.8e-11
TAIR|locus:2077932	295	MNP "MONOPOLE" [Arabidopsis th	0.101	0.105	0.838	1e-09

TAIR|locus:2170277 GNC "GATA, nitrate-inducible, carbon metabolism-involved" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 32/33 (96%), Positives = 33/33 (100%)

Query:   168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQ 200
             IRVC+DCNTTKTPLWRSGPRGPKSLCNACGIRQ
Sbjct:   229 IRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQ 261

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010255 "glucose mediated signaling pathway" evidence=IMP

GO:0051171 "regulation of nitrogen compound metabolic process" evidence=IEP;IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2120845 CGA1 "cytokinin-responsive gata factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 6.5e-28, Sum P(2) = 6.5e-28
 Identities = 31/33 (93%), Positives = 33/33 (100%)

Query:   168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQ 200
             IR+C+DCNTTKTPLWRSGPRGPKSLCNACGIRQ
Sbjct:   198 IRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQ 230

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2093678 GATA17 "GATA transcription factor 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
 Identities = 23/31 (74%), Positives = 25/31 (80%)

Query:   169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIR 199
             R C DC T +TPLWR GP GPKSLCNACGI+
Sbjct:    42 RTCVDCGTIRTPLWRGGPAGPKSLCNACGIK 72

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
 Identities = 25/31 (80%), Positives = 27/31 (87%)

Query:   169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIR 199
             + CADC T+KTPLWR GP GPKSLCNACGIR
Sbjct:    36 KTCADCGTSKTPLWRGGPVGPKSLCNACGIR 66

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
 Identities = 24/29 (82%), Positives = 25/29 (86%)

Query:   171 CADCNTTKTPLWRSGPRGPKSLCNACGIR 199
             CA C T+KTPLWR GP GPKSLCNACGIR
Sbjct:    43 CAICGTSKTPLWRGGPAGPKSLCNACGIR 71

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:504955441 AT4G16141 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
 Identities = 22/31 (70%), Positives = 26/31 (83%)

Query:   169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIR 199
             + C DC T++TPLWR GP GPKSLCNACGI+
Sbjct:    37 KTCVDCGTSRTPLWRGGPAGPKSLCNACGIK 67

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2148558 GATA23 "GATA transcription factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 25/32 (78%), Positives = 28/32 (87%)

Query:   168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIR 199
             IR C++C TTKTP+WR GP GPKSLCNACGIR
Sbjct:    25 IRCCSECKTTKTPMWRGGPTGPKSLCNACGIR 56

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:2115195 GATA19 "GATA transcription factor 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 26/31 (83%), Positives = 29/31 (93%)

Query:   169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIR 199
             R CA+C+TT TPLWR+GPRGPKSLCNACGIR
Sbjct:    75 RRCANCDTTSTPLWRNGPRGPKSLCNACGIR 105

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062095 GATA20 "GATA transcription factor 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 25/31 (80%), Positives = 28/31 (90%)

Query:   169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIR 199
             R CA C+TT TPLWR+GP+GPKSLCNACGIR
Sbjct:    92 RRCASCDTTSTPLWRNGPKGPKSLCNACGIR 122

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2077932 MNP "MONOPOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 26/31 (83%), Positives = 29/31 (93%)

Query:   169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIR 199
             R CA+C+TT TPLWR+GPRGPKSLCNACGIR
Sbjct:   152 RRCANCDTTSTPLWRNGPRGPKSLCNACGIR 182

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CGA1	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1); transcription factor; CYTOKININ-RESPONSIVE GATA FACTOR 1 (CGA1); FUNCTIONS IN- transcription factor activity; INVOLVED IN- response to cytokinin stimulus; LOCATED IN- nucleus; EXPRESSED IN- 12 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Zinc finger, NHR/GATA-type (InterPro-IPR013088), Zinc finger, GATA-type (InterPro-IPR000679); BEST Arabidopsis thaliana protein match is- GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor (TAIR-AT5G56860.1); Has 1008 Blast hits to 988 proteins i [...] (352 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G53903	unknown protein; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF581 (InterPro-IPR00 [...] (126 aa)							•		0.679
	AT1G53885	senescence-associated protein-related; senescence-associated protein-related; FUNCTIONS IN- mol [...] (126 aa)							•		0.679
	AT5G14280	DNA-binding storekeeper protein-related; DNA-binding storekeeper protein-related; FUNCTIONS IN- [...] (572 aa)							•		0.675
	AT4G00270	DNA-binding storekeeper protein-related; DNA-binding storekeeper protein-related; FUNCTIONS IN- [...] (302 aa)							•		0.657
	AT2G36340	DNA-binding storekeeper protein-related; DNA-binding storekeeper protein-related; FUNCTIONS IN- [...] (414 aa)							•		0.599
	AT1G76350	RWP-RK domain-containing protein; RWP-RK domain-containing protein; FUNCTIONS IN- transcription [...] (808 aa)							•		0.599
	AT2G25650	DNA-binding storekeeper protein-related; DNA-binding storekeeper protein-related; FUNCTIONS IN- [...] (386 aa)							•		0.591
	AT4G38340	RWP-RK domain-containing protein; RWP-RK domain-containing protein; FUNCTIONS IN- transcription [...] (767 aa)							•		0.575
	AT4G35270	RWP-RK domain-containing protein; RWP-RK domain-containing protein; FUNCTIONS IN- transcription [...] (974 aa)							•		0.565
	AT1G68360	zinc finger protein-related; zinc finger protein-related; FUNCTIONS IN- transcription factor ac [...] (244 aa)							•		0.539

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
pfam00320	36	pfam00320, GATA, GATA zinc finger	3e-15
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	3e-15
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	5e-12
COG5641	498	COG5641, GAT1, GATA Zn-finger-containing transcrip	6e-04

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 68.1 bits (167), Expect = 3e-15
 Identities = 21/35 (60%), Positives = 26/35 (74%)

Query: 171 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARR 205
           C++C TTKTPLWR GP G ++LCNACG+  RK   
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGL 35

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 68.2 bits (167), Expect = 3e-15
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 166 NTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAA 210
            + R C++C TT+TPLWR GP G K+LCNACG+  +K        
Sbjct: 1   GSGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPL 45

Length = 52

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 59.7 bits (145), Expect = 5e-12
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 170 VCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAA 210
            C++C TT TPLWR GP G  +LCNACG+  +K       +
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLS 41

Length = 54

>gnl|CDD|227928 COG5641, GAT1, GATA Zn-finger-containing transcription factor [Transcription]

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 14/147 (9%)

Query: 144 DHQKQPPSSSLEPDNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKS----LCNACGIR 199
           +    P  +S    N N ++N+N   VC++C TT TPLWR            LCNACG+ 
Sbjct: 134 NTTLNPGGTSSLNPNNNQSDNSNQPHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLY 193

Query: 200 QRKARRAMAAAAANGTAVQLAADDTSSNKKKSKTPRPSNNNSCLPFKKRCKYNSNSPSRG 259
            +           +G+     +  + S K +S     +NN+S           ++S S+ 
Sbjct: 194 LK----------LHGSPRAPISLKSDSIKSRSSRSSHNNNDSNGENANTESIGNSSASKL 243

Query: 260 KKKLCSFEDLTLILSKNNSSALQRVFP 286
            K          +LS   S + +   P
Sbjct: 244 TKSWEERPQGRQLLSDAGSLSPRSNNP 270

Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.44
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.43
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.42
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.65
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.06
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	84.35

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.44  E-value=7.9e-14  Score=102.70  Aligned_cols=35  Identities=54%  Similarity=1.213  Sum_probs=32.2

Q ss_pred             ccccCCCCCCCcccCCCCCCcccchHHHHHHHHhh
Q 021859          170 VCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR  204 (306)
Q Consensus       170 ~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~  204 (306)
                      .|+||++++||+||+||.|..+|||||||||++..
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~   35 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG   35 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC
Confidence            59999999999999999888999999999998543

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.43  E-value=6e-14  Score=102.29  Aligned_cols=38  Identities=55%  Similarity=1.174  Sum_probs=34.9

Q ss_pred             CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHhh
Q 021859          167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR  204 (306)
Q Consensus       167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~  204 (306)
                      .++.|+||++++||+||+||.|+..|||||||+|++..
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~   39 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHG   39 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcC
Confidence            46899999999999999999998899999999998654

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.42  E-value=3.5e-14  Score=96.55  Aligned_cols=34  Identities=53%  Similarity=1.237  Sum_probs=27.2

Q ss_pred             cccCCCCCCCcccCCCCCCcccchHHHHHHHHhh
Q 021859          171 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR  204 (306)
Q Consensus       171 CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~  204 (306)
                      |++|++++||+||+||.|..+|||||||+|++.+
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~   34 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYG   34 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhC
Confidence            8999999999999999998789999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.65  E-value=1e-08  Score=87.20  Aligned_cols=36  Identities=69%  Similarity=1.478  Sum_probs=34.4

Q ss_pred             CcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859          168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA  203 (306)
Q Consensus       168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~  203 (306)
                      ...|++|+++.||+||+++.|+..+|||||+++++.
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~  234 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKG  234 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhc
Confidence            689999999999999999999999999999999866

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.06  E-value=1.7e-06  Score=87.93  Aligned_cols=37  Identities=46%  Similarity=1.022  Sum_probs=32.3

Q ss_pred             CCCCcccccCCCCCCCcccCCCCC----CcccchHHHHHHH
Q 021859          165 TNTIRVCADCNTTKTPLWRSGPRG----PKSLCNACGIRQR  201 (306)
Q Consensus       165 ~~~~r~CsnC~tt~TP~WRrGP~G----~~~LCNACGL~~r  201 (306)
                      ......|.||.++.||+|||+..+    +-+|||||||+++
T Consensus       155 s~~~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~k  195 (498)
T COG5641         155 SNQPHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLK  195 (498)
T ss_pred             ccccchhccccccCCccccccccccccCCcccccccccccc
Confidence            345569999999999999999993    2799999999997

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=84.35  E-value=1  Score=46.97  Aligned_cols=38  Identities=34%  Similarity=0.638  Sum_probs=30.6

Q ss_pred             CCCcccccCCCCCCCcc-cCC-CCCCcccchHHHHHHHHh
Q 021859          166 NTIRVCADCNTTKTPLW-RSG-PRGPKSLCNACGIRQRKA  203 (306)
Q Consensus       166 ~~~r~CsnC~tt~TP~W-RrG-P~G~~~LCNACGL~~rK~  203 (306)
                      ..++.|-+|+|++.-+| ..| |+-...||-.|=+||+|.
T Consensus       384 ~~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKy  423 (693)
T KOG3554|consen  384 QDGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKY  423 (693)
T ss_pred             CCCCcccccccccccceeccCCCCccchhhHHHHHHHHHh
Confidence            34789999999999999 344 444456999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	6e-12
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	6e-12
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	6e-10
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	1e-08
3dfx_A	63	Trans-acting T-cell-specific transcription factor	7e-08

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 58.6 bits (142), Expect = 6e-12
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202
           R C +C  T TPLWR    G   LCNACG+  + 
Sbjct: 5   RECVNCGATATPLWRRDRTG-HYLCNACGLYHKM 37

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 59.5 bits (144), Expect = 6e-12
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 159 GNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202
           G++ N  +    C++C+ T+T  WR+        CNAC I QRK
Sbjct: 1   GSHMNKKS--FQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRK 42

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 52.9 bits (127), Expect = 6e-10
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202
             C +C T  TPLWR  P G + LCNACG+  + 
Sbjct: 2   TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKL 34

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 162 NNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARR 205
           N   N    C +C T  TPLWR  P G + LCNACG+  +    
Sbjct: 3   NGEQNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGV 45

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 47.7 bits (113), Expect = 7e-08
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 162 NNNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARR 205
           +        CA+C TT T LWR    G   +CNACG+  +    
Sbjct: 1   SAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNI 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.65
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.61
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.59
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.57
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.49
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.42
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.28

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.65  E-value=1.4e-16  Score=120.18  Aligned_cols=40  Identities=38%  Similarity=0.809  Sum_probs=35.8

Q ss_pred             CCCCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859          163 NNTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA  203 (306)
Q Consensus       163 ~s~~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~  203 (306)
                      ++......|++|++++||+||+||+|+ +|||||||+|++.
T Consensus         2 ~~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~   41 (63)
T 3dfx_A            2 AARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLH   41 (63)
T ss_dssp             CCCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHH
T ss_pred             CCCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHc
Confidence            346678999999999999999999996 9999999999844

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.61  E-value=3.2e-16  Score=118.98  Aligned_cols=46  Identities=41%  Similarity=0.878  Sum_probs=39.3

Q ss_pred             CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHhhhHHHHHHhcCccccccc
Q 021859          165 TNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAA  221 (306)
Q Consensus       165 ~~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~k~~~~~~~~G~~~~~a~  221 (306)
                      .+..+.|++|++++||+||+||.|. +|||||||||++          +|..+|...
T Consensus         6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~----------~~~~RP~~~   51 (66)
T 4gat_A            6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKL----------HGVVRPLSL   51 (66)
T ss_dssp             SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHH----------HCSCCCGGG
T ss_pred             CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHH----------cCCCCchhh
Confidence            4678999999999999999999995 999999999983          556666544

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.59  E-value=8.7e-16  Score=109.43  Aligned_cols=35  Identities=46%  Similarity=1.037  Sum_probs=32.5

Q ss_pred             CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 021859          167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK  202 (306)
Q Consensus       167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK  202 (306)
                      ..+.|++|++++||+||+||.|+ +|||||||||++
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~   37 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKM   37 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHH
Confidence            46899999999999999999995 999999999983

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.57  E-value=8.3e-16  Score=108.10  Aligned_cols=35  Identities=46%  Similarity=1.029  Sum_probs=31.7

Q ss_pred             CcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859          168 IRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA  203 (306)
Q Consensus       168 ~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~  203 (306)
                      ++.|++|++++||+||+||+|+ +|||||||+|++.
T Consensus         1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~   35 (43)
T 2vut_I            1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLH   35 (43)
T ss_dssp             -CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHH
T ss_pred             CCcCCccCCCCCCccccCCCCC-cccHHHHHHHHHh
Confidence            3689999999999999999996 9999999999844

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.49  E-value=4.8e-15  Score=114.09  Aligned_cols=41  Identities=34%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             CCCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHhh
Q 021859          164 NTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR  204 (306)
Q Consensus       164 s~~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~  204 (306)
                      +....+.|+||+|++||+||+|+.+..+|||||||||++..
T Consensus         4 ~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~   44 (71)
T 2kae_A            4 MNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN   44 (71)
T ss_dssp             ----CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH
T ss_pred             CCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC
Confidence            35567999999999999999954443499999999998654

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.42  E-value=1.8e-13  Score=113.04  Aligned_cols=48  Identities=33%  Similarity=0.717  Sum_probs=40.1

Q ss_pred             CCCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHhhhHHHHHHhcCcccccccc
Q 021859          164 NTNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQLAAD  222 (306)
Q Consensus       164 s~~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~k~~~~~~~~G~~~~~a~~  222 (306)
                      .......|+||+++.||+||+||+| ++|||||||||+          .+|..++....
T Consensus        55 ~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~----------~~~~~rp~~~~  102 (115)
T 4hc9_A           55 ARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK----------LHNINRPLTMK  102 (115)
T ss_dssp             CCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH----------HHSSCCCGGGC
T ss_pred             cccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHH----------HhCCCCCcccc
Confidence            3456799999999999999999999 899999999998          45555555443

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.28  E-value=1.8e-12  Score=107.01  Aligned_cols=43  Identities=44%  Similarity=0.930  Sum_probs=36.0

Q ss_pred             CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHhhhHHHHHHhcCccccc
Q 021859          166 NTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAANGTAVQL  219 (306)
Q Consensus       166 ~~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~~k~~~~~~~~G~~~~~  219 (306)
                      ...+.|+||++++||+||+|+.| .+|||||||||+          ++|...+.
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~K----------l~G~nRP~   45 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHK----------MNGQNRPL   45 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH----------HHSSCCCC
T ss_pred             CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhh----------hccccccc
Confidence            45799999999999999999999 899999999997          56666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	306
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	3e-12
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	9e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	5e-08

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (140), Expect = 3e-12
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202
           R C +C  T TPLWR    G   LCNACG+  + 
Sbjct: 3   RECVNCGATATPLWRRDRTG-HYLCNACGLYHKM 35

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 51.0 bits (122), Expect = 9e-10
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 170 VCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 202
            C +C T  TPLWR  P G + LCNACG+  + 
Sbjct: 2   TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKL 33

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.9 bits (111), Expect = 5e-08
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 169 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARR 205
            VC++C T+ T LWR  P G   +CNACG+  +  + 
Sbjct: 5   TVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.64
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.63
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.62

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.9e-17  Score=113.16  Aligned_cols=36  Identities=44%  Similarity=1.021  Sum_probs=33.0

Q ss_pred             CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHHh
Q 021859          167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKA  203 (306)
Q Consensus       167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK~  203 (306)
                      +.+.|++|++++||+||+||.| ++|||||||||+..
T Consensus         1 e~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~   36 (39)
T d1y0ja1           1 EARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMN   36 (39)
T ss_dssp             CCCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHS
T ss_pred             CcCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHh
Confidence            3689999999999999999999 79999999999843

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.63  E-value=4.5e-17  Score=112.80  Aligned_cols=31  Identities=52%  Similarity=1.240  Sum_probs=30.0

Q ss_pred             ccccCCCCCCCcccCCCCCCcccchHHHHHHH
Q 021859          170 VCADCNTTKTPLWRSGPRGPKSLCNACGIRQR  201 (306)
Q Consensus       170 ~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~r  201 (306)
                      .|+||++++||+||+||.| ++|||||||||+
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k   32 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK   32 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHH
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHH
Confidence            6999999999999999999 899999999997

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=1.8e-16  Score=118.79  Aligned_cols=35  Identities=43%  Similarity=1.018  Sum_probs=32.5

Q ss_pred             CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHH
Q 021859          167 TIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK  202 (306)
Q Consensus       167 ~~r~CsnC~tt~TP~WRrGP~G~~~LCNACGL~~rK  202 (306)
                      .+..|+||++++||+||+||.| .+|||||||||++
T Consensus         3 ~g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~   37 (66)
T d3gata_           3 AGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKL   37 (66)
T ss_dssp             TTCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccccCCCC-CcccchhHHHHHH
Confidence            4678999999999999999999 7999999999983