Citrus Sinensis ID: 021872

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccccHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccEccccccccccccccccc
Coil and Loop (DISEMBL)
mysaihslpldgghpdfqggpldgtnlpgdaclvlttdpkprlrwTAELHDRFVDAVtqlggpdkatpktimrtmgvkGLTLYHLKSHLQKYRLGKQACkettenskdvscvaesqdtgssttsstrmvaqdpndgyqVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSndcqgmvplenikmpSISELAAALEsknastiparigdcsvescltstsspvspmglgsqaaamkkrprplfgngeslplegnmrQEVEWVMPHIG
Flexible Loop (DISEMBL)
MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDavtqlggpdkatpktIMRTMGVKGLTLYHLKSHLQKYRLGKQACKEttenskdvscvaesqdtgssttsstrmvaqdpnDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFgngeslplegnmrqevewvmphig
Low Complexity Region (SEG)
MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDtgssttsstRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVaagleaareelselaIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Disordered region (IsUnstruct)
*************************NLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK*********************************************ALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIK***********************************************************************************
Disordered Region (DISOPRED)
********************************************WTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY*******************************************************************************KY**************************************************************************************************************************QEVEWVMPHI*
Disordered Region (DISEMBL)
MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA*******************************AQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESC*********************KRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Disordered Region (DISPRO)
******S*PLD*****************************PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA*************************************GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.483	0.413	0.675	3e-55
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.460	0.341	0.48	2e-32
Q700D9	255	Putative Myb family trans	no	no	0.179	0.215	0.654	7e-14
Q93WJ9	403	Transcription repressor K	no	no	0.196	0.148	0.583	2e-13
Q9C616	388	Probable transcription fa	no	no	0.418	0.329	0.366	2e-13
Q0J235	532	Probable transcription fa	no	no	0.196	0.112	0.583	6e-13
Q941I2	322	Probable transcription fa	no	no	0.281	0.267	0.457	6e-13
Q9FJV5	276	Probable transcription fa	no	no	0.183	0.202	0.589	1e-12
Q9ZWJ9	664	Two-component response re	no	no	0.176	0.081	0.581	2e-10
Q9FGT7	635	Two-component response re	no	no	0.186	0.089	0.568	2e-10

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  215 bits (548), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/157 (67%), Positives = 123/157 (78%), Gaps = 9/157 (5%)

Query: 29  GDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 88
           GD+ LVLTTDPKPRLRWT ELH+RFVDAV QLGGPDKATPKTIMR MGVKGLTLYHLKSH
Sbjct: 23  GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82

Query: 89  LQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQME 148
           LQK+RLGKQ  KE  ++S      A + D   +  SS+ M++++ N+         +QME
Sbjct: 83  LQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE---------MQME 133

Query: 149 VQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 185
           VQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L
Sbjct: 134 VQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 9/150 (6%)

Query: 40  KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQAC 99
           K R+RWT ELH+ FV+AV QLGG ++ATPK +++ +   GLT+YH+KSHLQKYR  +   
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYK- 289

Query: 100 KETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEV 159
            ET+E         E Q+     TS   + + D     ++T+ALR+QMEVQ+RLHEQLE+
Sbjct: 290 PETSE------VTGEPQEK--KMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEI 341

Query: 160 QRRLQLRIEAQGKYLQSILEKACKALNDQA 189
           QR LQL+IE QG+YLQ + EK  K  ++++
Sbjct: 342 QRSLQLQIEKQGRYLQMMFEKQQKIQDNKS 371

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
          P PRLRWT ELH  FV AV  LGG  KATPK +++ M VKGLT+ H+KSHLQ YR
Sbjct: 22 PVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query: 41  PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
           PR+RWT+ LH RFV AV  LGG ++ATPK+++  M VK LTL H+KSHLQ YR  K   K
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 11/139 (7%)

Query: 41  PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
           PR+RWT  LH RFV AV  LGG ++ATPK+++  M VK LTL H+KSHLQ YR  K    
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK---- 269

Query: 101 ETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQ 160
            TT+ +   S  ++  + GSS  +++     D N   + +E L   +E    L      +
Sbjct: 270 -TTDKAAASSGQSDVYENGSSGDNNSDDWMFDMNRKSRDSEELTNPLEKSNGLWTNSSGE 328

Query: 161 RRLQLRIEAQGKYLQSILE 179
            RL       GK + ++ E
Sbjct: 329 ARL------HGKLIDNVAE 341

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query: 41  PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
           PR+RWT+ LH RFV AV  LGG ++ATPK+++  M VK LTL H+KSHLQ YR  K   K
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 8/94 (8%)

Query: 41  PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
           PR+RWT  LH  FV AV  LGG ++ATPK+++  M V+ LTL H+KSHLQ YR  K   K
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224

Query: 101 ETT-------ENSKDVSCVAESQD-TGSSTTSST 126
            TT       EN   V+   E+++ TG    SS+
Sbjct: 225 PTTSSGQSDCENGSQVNSEREARNLTGLWNNSSS 258

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 41  PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 96
           PR+RWT+ LH  FV AV  LGG ++ATPK+++  M VK LTL H+KSHLQ YR  K
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 161

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 40  KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
           KPR+ W+ ELH +FV AV QLG  DKA PK I+  M V GLT  ++ SHLQKYR+
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRI 269

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 37  TDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
           T  KPR+ W+ ELH +FV AV QLG  DKA PK I+  M ++GLT  ++ SHLQKYRL
Sbjct: 191 TRKKPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRL 247

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
255554128	303	transcription factor, putative [Ricinus	0.990	1.0	0.866	1e-150
118486035	309	unknown [Populus trichocarpa]	0.990	0.980	0.834	1e-148
327412613	307	putative MYB transcription factor [Rosa	0.990	0.986	0.837	1e-142
224060385	285	predicted protein [Populus trichocarpa]	0.931	1.0	0.854	1e-141
302398985	307	MYBR domain class transcription factor [	0.993	0.990	0.805	1e-139
359477885	307	PREDICTED: uncharacterized protein LOC10	0.996	0.993	0.824	1e-139
224140815	280	predicted protein [Populus trichocarpa]	0.905	0.989	0.847	1e-135
449487536	315	PREDICTED: uncharacterized protein LOC10	0.993	0.965	0.767	1e-126
449432414	315	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.993	0.965	0.764	1e-126
18404044	295	myb family transcription factor [Arabido	0.924	0.959	0.709	1e-113

>gi|255554128|ref|XP_002518104.1| transcription factor, putative [Ricinus communis] gi|223542700|gb|EEF44237.1| transcription factor, putative [Ricinus communis]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/306 (86%), Positives = 289/306 (94%), Gaps = 3/306 (0%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYSAIHSLPLDG H DFQG  LDGTNLPGDACLVLTTDPKPRLRWTAELH+RFVDAVTQL
Sbjct: 1   MYSAIHSLPLDG-HGDFQGS-LDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQL 58

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGS 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG+Q+CKE+ ENSKD S VAESQDTGS
Sbjct: 59  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGRQSCKESNENSKDAS-VAESQDTGS 117

Query: 121 STTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 180
           ST++S+RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK
Sbjct: 118 STSTSSRMIAQDVNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 177

Query: 181 ACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNAS 240
           ACKALNDQA V+AGLEAAREELSELAIKVSN+CQG+VP +N+KMPS+SELA ALESK+ S
Sbjct: 178 ACKALNDQAAVSAGLEAAREELSELAIKVSNECQGIVPADNMKMPSLSELAVALESKSTS 237

Query: 241 TIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEW 300
            +PARIGDCSVESCLTST SPVSPMG+GS  A++KKRPRP+FGNG+SLPLEG+MRQEVEW
Sbjct: 238 NLPARIGDCSVESCLTSTGSPVSPMGVGSHTASIKKRPRPIFGNGDSLPLEGSMRQEVEW 297

Query: 301 VMPHIG 306
           +M +IG
Sbjct: 298 MMGNIG 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486035|gb|ABK94861.1| unknown [Populus trichocarpa]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/308 (83%), Positives = 279/308 (90%), Gaps = 5/308 (1%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYSAIHSLPLDG H DFQ   LDG NLPGDACLVLTTDPKPRLRWTAELH+RFVDAVTQL
Sbjct: 1   MYSAIHSLPLDG-HGDFQAS-LDGINLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQL 58

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSC---VAESQD 117
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKDV     VAESQD
Sbjct: 59  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDVGIAPSVAESQD 118

Query: 118 TGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSI 177
           TGSST++S+RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQ  LQLRIEAQGKYLQSI
Sbjct: 119 TGSSTSASSRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYLQSI 178

Query: 178 LEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESK 237
           LEKACKALNDQA+  AGLEAAREELSELAIKVSN+C G+ PL+ +KMPS+SELAAAL ++
Sbjct: 179 LEKACKALNDQAVATAGLEAAREELSELAIKVSNECAGIAPLDTMKMPSLSELAAALGNR 238

Query: 238 NASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQE 297
           NAS +PARIGDCSVESCLTSTSSPVSPMG+GSQ A+ KKR RP+ GNG+SLP EGN RQE
Sbjct: 239 NASNVPARIGDCSVESCLTSTSSPVSPMGVGSQVASTKKRSRPVLGNGDSLPFEGNFRQE 298

Query: 298 VEWVMPHI 305
           VEW M +I
Sbjct: 299 VEWTMSNI 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327412613|emb|CCA29095.1| putative MYB transcription factor [Rosa rugosa] gi|327412625|emb|CCA29101.1| putative MYB transcription factor [Rosa rugosa]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 258/308 (83%), Positives = 281/308 (91%), Gaps = 5/308 (1%)

Query: 1   MYSAIHSLPLDGG---HPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAV 57
           MYSA+HSLPLDGG   H +F  G LDGTNLPGDACLVLTTDPKPRLRWTAELH+RFVDAV
Sbjct: 1   MYSALHSLPLDGGVCGHGEF-SGSLDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAV 59

Query: 58  TQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQD 117
           TQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD SC+AESQD
Sbjct: 60  TQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQD 119

Query: 118 TGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSI 177
           TGSS TSS R++AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSI
Sbjct: 120 TGSSATSS-RVIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSI 178

Query: 178 LEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESK 237
           LEKACKALNDQA  AAGLEAA+EELSELAIKVS+DCQGM PL+ IKM S+SE+AAA+E+K
Sbjct: 179 LEKACKALNDQAATAAGLEAAKEELSELAIKVSSDCQGMAPLDTIKMQSLSEIAAAIENK 238

Query: 238 NASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQE 297
           +AS + ARIG+CSV+SCLTST SP SPMG+ S AAAMKKR RP F NG+SLPLEGNMRQE
Sbjct: 239 SASNVLARIGNCSVDSCLTSTGSPGSPMGMSSLAAAMKKRQRPFFSNGDSLPLEGNMRQE 298

Query: 298 VEWVMPHI 305
           VEW+M +I
Sbjct: 299 VEWMMSNI 306

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060385|ref|XP_002300173.1| predicted protein [Populus trichocarpa] gi|222847431|gb|EEE84978.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/288 (85%), Positives = 268/288 (93%), Gaps = 3/288 (1%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYSAIHSLPLDG H DFQ   LDGTNLPGDACLVLTTDPKPRLRWTAELH+RFVDAV QL
Sbjct: 1   MYSAIHSLPLDG-HGDFQAA-LDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVAQL 58

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGS 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKD S VAESQDTGS
Sbjct: 59  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDAS-VAESQDTGS 117

Query: 121 STTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 180
           ST++S+RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK
Sbjct: 118 STSASSRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 177

Query: 181 ACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNAS 240
           ACKALNDQA+  AGLEAAREELSELAIKVSN+  G+ PL+ +KMPSISELAAALE+K+AS
Sbjct: 178 ACKALNDQAVATAGLEAAREELSELAIKVSNERAGIAPLDTMKMPSISELAAALENKHAS 237

Query: 241 TIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESL 288
            +PAR+GDCSVESCLTST SPVSPMG+G+Q A+ KKR RP+FGNG+SL
Sbjct: 238 NVPARVGDCSVESCLTSTGSPVSPMGVGAQVASTKKRSRPVFGNGDSL 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398985|gb|ADL36787.1| MYBR domain class transcription factor [Malus x domestica]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/309 (80%), Positives = 279/309 (90%), Gaps = 5/309 (1%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYSAIHSLPLDG H DF GG LDGTNLPGDACLVLTTDPKPRLRWTAELH+RFVDAVTQL
Sbjct: 1   MYSAIHSLPLDG-HGDF-GGSLDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQL 58

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKD---VSCVAESQD 117
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK +CK++ ENSKD    SC+AESQD
Sbjct: 59  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKLSCKDSAENSKDGIAASCIAESQD 118

Query: 118 TGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSI 177
           TGSS+  S+R++AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQ KYLQSI
Sbjct: 119 TGSSSAVSSRVIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQSKYLQSI 178

Query: 178 LEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESK 237
           LEKACKALNDQA  AAG+EAA+EELSELAI+VSNDC+G+VPL++ K+PS+SE+AAALE++
Sbjct: 179 LEKACKALNDQAATAAGVEAAKEELSELAIRVSNDCEGIVPLDSTKIPSLSEIAAALENR 238

Query: 238 NASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQE 297
           + S + A +G+CSV+SCLTST SPV PM + S AAAMKKR RP FGNG+SLPLE NMRQE
Sbjct: 239 DVSNVMAHLGNCSVDSCLTSTGSPVLPMDMSSLAAAMKKRQRPFFGNGDSLPLESNMRQE 298

Query: 298 VEWVMPHIG 306
           VEW+M +IG
Sbjct: 299 VEWMMSNIG 307

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477885|ref|XP_002268698.2| PREDICTED: uncharacterized protein LOC100250267 [Vitis vinifera]

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 254/308 (82%), Positives = 275/308 (89%), Gaps = 3/308 (0%)

Query: 1   MYSAIHSLPLDGG--HPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVT 58
           MYSAIHSLPLDGG  H DFQG  LDGTNLPGDACLVLTTDPKPRLRWTAELH+RFVDAVT
Sbjct: 1   MYSAIHSLPLDGGVAHADFQGS-LDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVT 59

Query: 59  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDT 118
           QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE T+N K+ SC+AESQDT
Sbjct: 60  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKELTDNCKEASCIAESQDT 119

Query: 119 GSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSIL 178
           GSS+TSS+RM+ QD NDGYQVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYLQSIL
Sbjct: 120 GSSSTSSSRMIPQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSIL 179

Query: 179 EKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKN 238
           EKACKAL DQA   AGLEAAREELSEL IKVSNDC+GM PLE IKMP +SE+AAALE+KN
Sbjct: 180 EKACKALKDQAAATAGLEAAREELSELQIKVSNDCEGMNPLETIKMPCLSEIAAALENKN 239

Query: 239 ASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEV 298
           A  +PARIGDCSV+SCLTS+ SP+SPMG  S+ A MKKR RPLF  G SL LE NMRQ+V
Sbjct: 240 AVNVPARIGDCSVDSCLTSSGSPISPMGASSRGAVMKKRSRPLFTGGSSLALENNMRQDV 299

Query: 299 EWVMPHIG 306
           EW+M ++G
Sbjct: 300 EWMMTNMG 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140815|ref|XP_002323774.1| predicted protein [Populus trichocarpa] gi|222866776|gb|EEF03907.1| predicted protein [Populus trichocarpa]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/282 (84%), Positives = 258/282 (91%), Gaps = 5/282 (1%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYSAIHSLPLDG H DFQ   LDG NLPGDACLVLTTDPKPRLRWTAELH+RFVDAVTQL
Sbjct: 1   MYSAIHSLPLDG-HGDFQAS-LDGINLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQL 58

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSC---VAESQD 117
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKDV     VAESQD
Sbjct: 59  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDVGIAPSVAESQD 118

Query: 118 TGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSI 177
           TGSST++S+RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQ  LQLRIEAQGKYLQSI
Sbjct: 119 TGSSTSASSRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYLQSI 178

Query: 178 LEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESK 237
           LEKACKALNDQA+  AGLEAAREELSELAIKVSN+C G+ PL+ +KMPS+SELAAAL ++
Sbjct: 179 LEKACKALNDQAVATAGLEAAREELSELAIKVSNECAGIAPLDTMKMPSLSELAAALGNR 238

Query: 238 NASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPR 279
           NAS +PARIGDCSVESCLTSTSSPVSPMG+GSQ A+ KKR R
Sbjct: 239 NASNVPARIGDCSVESCLTSTSSPVSPMGVGSQVASTKKRSR 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487536|ref|XP_004157675.1| PREDICTED: uncharacterized protein LOC101223852 [Cucumis sativus]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/306 (76%), Positives = 268/306 (87%), Gaps = 2/306 (0%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYS I +LP+DGG   FQG  LDGTNLPGDACLVLT+DPKPRLRWTAELH+RFVDAVTQL
Sbjct: 12  MYSTITALPMDGGGGKFQGS-LDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQL 70

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGS 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD SC+AESQ+T S
Sbjct: 71  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSS 130

Query: 121 STTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 180
           S++ S+R++AQD NDG+QVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYLQSILE+
Sbjct: 131 SSSPSSRIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILER 190

Query: 181 ACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNAS 240
           AC+AL+DQA  +AGLEAAREELSELAIKVSND + M PLE  K    SELAAALE++ A 
Sbjct: 191 ACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKALPFSELAAALENRKAP 250

Query: 241 TIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEW 300
           T+  RIGDCS++SCLTS  SPVSP+G+GS A AM KRPRP+F +G+S+ LEGN R +VEW
Sbjct: 251 TVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAM-KRPRPVFSHGDSMALEGNARHDVEW 309

Query: 301 VMPHIG 306
           +M +IG
Sbjct: 310 MMSNIG 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432414|ref|XP_004133994.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101213244 [Cucumis sativus]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/306 (76%), Positives = 268/306 (87%), Gaps = 2/306 (0%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYS I +LP+DGG   FQG  LDGTNLPGDACLVLT+DPKPRLRWTAELH+RFVDAVTQL
Sbjct: 12  MYSTITALPMDGGGGKFQGS-LDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQL 70

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGS 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD SC+AESQ+T S
Sbjct: 71  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSS 130

Query: 121 STTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 180
           S++ S+R++AQD NDG+QVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYLQSILE+
Sbjct: 131 SSSPSSRIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILER 190

Query: 181 ACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNAS 240
           AC+AL+DQA  +AGLEAAREELSELAIKVSND + M PLE  K+   SELAAALE++ A 
Sbjct: 191 ACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAP 250

Query: 241 TIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEW 300
           T+  RIGDCS++SCLTS  SPVSP+G+GS A AM KRPRP+F +G+S+ LEGN R +V W
Sbjct: 251 TVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAM-KRPRPVFSHGDSMALEGNARHDVXW 309

Query: 301 VMPHIG 306
           +M +IG
Sbjct: 310 MMSNIG 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404044|ref|NP_566744.1| myb family transcription factor [Arabidopsis thaliana] gi|15215654|gb|AAK91372.1| AT3g24120/MUJ8_3 [Arabidopsis thaliana] gi|20334892|gb|AAM16202.1| AT3g24120/MUJ8_3 [Arabidopsis thaliana] gi|21594046|gb|AAM65964.1| transfactor, putative [Arabidopsis thaliana] gi|332643338|gb|AEE76859.1| myb family transcription factor [Arabidopsis thaliana]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/310 (70%), Positives = 244/310 (78%), Gaps = 27/310 (8%)

Query: 1   MYSAIHSLPLDGGH--PDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVT 58
           MYSAI SLPLDGGH   D+ G PLDGTNLPGDACLVLTTDPKPRLRWT ELH+RFVDAVT
Sbjct: 1   MYSAIRSLPLDGGHVGGDYHG-PLDGTNLPGDACLVLTTDPKPRLRWTTELHERFVDAVT 59

Query: 59  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDT 118
           QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQK+RLG+QA KE+TENSKD SCV ESQDT
Sbjct: 60  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQAGKESTENSKDASCVGESQDT 119

Query: 119 GSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSIL 178
           GSS+TSS RM  Q+ N+GYQVTEALR QMEVQRRLH+QLEVQRRLQLRIEAQGKYLQSIL
Sbjct: 120 GSSSTSSMRMAQQEQNEGYQVTEALRAQMEVQRRLHDQLEVQRRLQLRIEAQGKYLQSIL 179

Query: 179 EKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGM-VPLEN----IKMPSISELAAA 233
           EKACKA ++QA   AGLEAAREELSELAIKVSN  QG  VP  +    + MPS+SELA A
Sbjct: 180 EKACKAFDEQAATFAGLEAAREELSELAIKVSNSSQGTSVPYFDATKMMMMPSLSELAVA 239

Query: 234 LESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGN 293
           +++KN  T      +CSVES LTS +      G    AA+MKKR R     G++L     
Sbjct: 240 IDNKNNITT-----NCSVESSLTSITH-----GSSISAASMKKRQR-----GDNL----G 280

Query: 294 MRQEVEWVMP 303
           +  E  W+MP
Sbjct: 281 VGYESGWIMP 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.924	0.949	0.635	4e-90
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.911	0.945	0.630	1.2e-88
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.787	0.673	0.466	2e-49
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.732	0.568	0.470	6.9e-47
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.751	0.572	0.463	5.6e-45
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.477	0.621	0.578	9.6e-41
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.728	0.661	0.426	5.3e-40
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.424	0.454	0.602	4.3e-38
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.496	0.575	0.544	1.1e-37
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.444	0.302	0.517	2.4e-33

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 199/313 (63%), Positives = 222/313 (70%)

Query:     1 MYSAIHSLPLDGGHP--DFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVT 58
             MYSAI SLPLDGGH   D+ G PLDGTNLPGDACLVLTTDPKPRLRWT ELH+RFVDAVT
Sbjct:     1 MYSAIRSLPLDGGHVGGDYHG-PLDGTNLPGDACLVLTTDPKPRLRWTTELHERFVDAVT 59

Query:    59 QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDX 118
             QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQK+RLG+QA KE+TENSKD SCV ESQD 
Sbjct:    60 QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQAGKESTENSKDASCVGESQDT 119

Query:   119 XXXXXXXXRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLE---VQRRLQLRIEAQGKYLQ 175
                     RM  Q+ N+GYQVTEALR QMEVQRRLH+QLE   VQRRLQLRIEAQGKYLQ
Sbjct:   120 GSSSTSSMRMAQQEQNEGYQVTEALRAQMEVQRRLHDQLEYGQVQRRLQLRIEAQGKYLQ 179

Query:   176 SILEKACKALNDQAIVXXXXXXXXXXXXXXXIKVSNDCQGM-VPL----ENIKMPSISEL 230
             SILEKACKA ++QA                 IKVSN  QG  VP     + + MPS+SEL
Sbjct:   180 SILEKACKAFDEQAATFAGLEAAREELSELAIKVSNSSQGTSVPYFDATKMMMMPSLSEL 239

Query:   231 AAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPL 290
             A A+++KN  T      +CSVES LTS +      G    AA+MKKR R     G++L  
Sbjct:   240 AVAIDNKNNITT-----NCSVESSLTSITH-----GSSISAASMKKRQR-----GDNL-- 282

Query:   291 EGNMRQEVEWVMP 303
                +  E  W+MP
Sbjct:   283 --GVGYESGWIMP 293

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 198/314 (63%), Positives = 224/314 (71%)

Query:     1 MYSAIHS-LPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQ 59
             MYSAI S LPLDG   D+     DGTNLP DACLVLTTDPKPRLRWT+ELH+RFVDAVTQ
Sbjct:     1 MYSAIRSSLPLDGSLGDYS----DGTNLPIDACLVLTTDPKPRLRWTSELHERFVDAVTQ 56

Query:    60 LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXX 119
             LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQK+RLG+Q+CKE+ +NSKDVSCVAESQD  
Sbjct:    57 LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQSCKESIDNSKDVSCVAESQDTG 116

Query:   120 XXXXXXXRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLE---VQRRLQLRIEAQGKYLQS 176
                    R+ AQ+ N+ YQVTEALR QMEVQRRLHEQLE   VQRRLQLRIEAQGKYLQS
Sbjct:   117 SSSTSSLRLAAQEQNESYQVTEALRAQMEVQRRLHEQLEYTQVQRRLQLRIEAQGKYLQS 176

Query:   177 ILEKACKALNDQAIVXXXXXXXXXXXXXXXIKVS--NDCQGMVP-LENIKM--PSISELA 231
             ILEKACKA+ +QA+                IK S  N CQG     +  KM  PS+SELA
Sbjct:   177 ILEKACKAIEEQAVAFAGLEAAREELSELAIKASITNGCQGTTSTFDTTKMMIPSLSELA 236

Query:   232 AALESKNASTIPARIGDCSVESCLTSTS--SPVSPMGLGSQAAAMKKRPRPLFGNGESLP 289
              A+E KN         +CS ES LTS++  SPVS       AA MKKR R +FGNG+S+ 
Sbjct:   237 VAIEHKN---------NCSAESSLTSSTVGSPVS-------AALMKKRQRGVFGNGDSVV 280

Query:   290 LEGNMRQEVEWVMP 303
             + G+   +  WVMP
Sbjct:   281 V-GH---DAGWVMP 290

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 120/257 (46%), Positives = 152/257 (59%)

Query:    29 GDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 88
             GD+ LVLTTDPKPRLRWT ELH+RFVDAV QLGGPDKATPKTIMR MGVKGLTLYHLKSH
Sbjct:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82

Query:    89 LQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQDPNDGYQVTEALRVQME 148
             LQK+RLGKQ  KE  ++S      A + D          M++++ N+         +QME
Sbjct:    83 LQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE---------MQME 133

Query:   149 VQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVXXXXXXXXXXXXXXXIK 208
             VQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L  + +                + 
Sbjct:   134 VQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAGENMAAATAAAAVGGGYKGNLG 193

Query:   209 VSNDCQGMVPLEN-IKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGL 267
              S+    + P  + +  P   +L     + +           ++E+  T  ++  + + L
Sbjct:   194 SSSLSAAVGPPPHPLSFPPFQDLNIYGNTTDQVLDHHNFHHQNIENHFTGNNAADTNIYL 253

Query:   268 GSQAAAMKKRPRPLFGN 284
             G      KKRP P FGN
Sbjct:   254 G------KKRPNPNFGN 264

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 111/236 (47%), Positives = 140/236 (59%)

Query:    26 NLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHL 85
             N PGD+ L+L+TD KPRL+WT +LH+RF++AV QLGG DKATPKTIM+ MG+ GLTLYHL
Sbjct:    31 NSPGDSGLILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHL 90

Query:    86 KSHLQKYRLGKQACKETTE--NSKDVSCVAESQDXXXXXXXXXRM-VAQDPNDGYQVTEA 142
             KSHLQKYRL K    +     N   +  + E +           + +   PN    + EA
Sbjct:    91 KSHLQKYRLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEA 150

Query:   143 LRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVXXXXXXXXXXX 202
             L++Q+EVQRRLHEQLEVQR LQLRIEAQGKYLQS+LEKA + L  Q +            
Sbjct:   151 LQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGAAGIEAAKVQL 210

Query:   203 XXXXIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTST 258
                  KVS +     P  +   P   EL      +  +  P    DCS+ESCLTS+
Sbjct:   211 SELVSKVSAE----YPNSSFLEPK--ELQNLCSQQMQTNYPP---DCSLESCLTSS 257

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 115/248 (46%), Positives = 145/248 (58%)

Query:    14 HPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMR 73
             HP  +G   +GT   GD+ L+L+TD KPRL+WT +LH+RFV+AV QLGG DKATPKTIM+
Sbjct:    25 HPFLRG---NGT---GDSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMK 78

Query:    74 TMGVKGLTLYHLKSHLQKYRLGKQACKETTE--NSKDV-SCVAESQDXXXXXXXXXRMVA 130
              MG+ GLTLYHLKSHLQKYRL K    +     N   V + V E+             + 
Sbjct:    79 VMGIPGLTLYHLKSHLQKYRLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLSIG 138

Query:   131 QDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAI 190
               P+    +++AL++Q+EVQRRLHEQLEVQR LQLRIEAQGKYLQSILEKA + L  Q +
Sbjct:   139 PQPSMNLPISDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQNL 198

Query:   191 VXXXXXXXXXXXXXXXIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCS 250
                              KVS D     P  +   P   EL      +   T P    + S
Sbjct:   199 GAAGIEATKAQLSELVSKVSAD----YPDSSFLEPK--ELQNLHHQQMQKTYPP---NSS 249

Query:   251 VESCLTST 258
             ++SCLTS+
Sbjct:   250 LDSCLTSS 257

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query:    33 LVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92
             LVLTTDPKPRLRWT ELH+RFVDAVT LGGP+KATPKTIMR MGVKGLTLYHLKSHLQK+
Sbjct:    16 LVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKF 75

Query:    93 RLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQDPND-GYQVTEALRVQMEVQR 151
             RLGKQ  KE ++N     C+ ++            +    P   G  + E   +QMEVQR
Sbjct:    76 RLGKQPHKEHSQNHS--ICIRDTNRASMLDLRRNAVFTTSPLIIGRNMNE---MQMEVQR 130

Query:   152 RLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 183
             R+ E++ ++R++  RI AQGKY++S+LEKAC+
Sbjct:   131 RIEEEVVIERQVNQRIAAQGKYMESMLEKACE 162

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 101/237 (42%), Positives = 138/237 (58%)

Query:    33 LVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92
             LVL+TD KPRL+WT +LH +F++AV QLGGP+KATPK +M+ M + GLTLYHLKSHLQKY
Sbjct:    27 LVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKY 86

Query:    93 RLGKQACKETTENSKDVSCVAESQDXXXXXXXXX----RMVAQDPND----GYQVTEALR 144
             RLGK    +  +N  +VS  +E+Q+              +  ++ N     G Q+TEAL+
Sbjct:    87 RLGKSM--KFDDNKLEVSSASENQEVESKNDSRDLRGCSVTEENSNPAKDRGLQITEALQ 144

Query:   145 VQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVXXXXXXXXXXXXX 204
             +QMEVQ++LHEQ+EVQR LQ++IEAQGKYLQS+L KA + L   +               
Sbjct:   145 MQMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSSSNLGMDFARTELSR 204

Query:   205 XXIKVSNDCQGMVPLENIKMPSISE-LAAALESKNASTIPARIGDCSVESCLTSTSS 260
                 V+  C      E  ++    E      + +N      R   CSVES LTS+ +
Sbjct:   205 LASMVNRGCPSTSFSELTQVEEEEEGFLWYKKPENRGISQLR---CSVESSLTSSET 258

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 85/141 (60%), Positives = 104/141 (73%)

Query:    40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQAC 99
             K RLRWT ELH+RFVDAV QLGGPD+ATPK ++R MGV+GLT+YH+KSHLQKYRL K   
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 74

Query:   100 KETTENSKDVSCVAESQDXXXXXXXXXRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEV 159
               ++E  K      ES D          +   D + G Q+TEAL++QMEVQ+RLHEQLEV
Sbjct:    75 DSSSEGKKTDK--KESGDM---------LSGLDGSSGMQITEALKLQMEVQKRLHEQLEV 123

Query:   160 QRRLQLRIEAQGKYLQSILEK 180
             QR+LQLRIEAQGKYL+ I+E+
Sbjct:   124 QRQLQLRIEAQGKYLKKIIEE 144

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 86/158 (54%), Positives = 110/158 (69%)

Query:    34 VLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
             ++T DPKPRLRWTA+LHDRFVDAV +LGG DKATPK++++ MG+KGLTLYHLKSHLQKYR
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:    94 LGKQACKET--TENSKD---VSCVAESQDXXXXXXXXXRMVAQDPNDG-YQVTEALRVQM 147
             LG+Q  K+   TE +K+    S V              R        G     EA+R Q+
Sbjct:    61 LGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPFAEAMRHQV 120

Query:   148 EVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 185
             + Q+R  EQLEVQ++LQ+R+EAQGKYL ++LEKA K+L
Sbjct:   121 DAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSL 158

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 75/145 (51%), Positives = 96/145 (66%)

Query:    40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQAC 99
             K R+RWT ELH+ FV AV +L GP+KATPK + + M V+GLT+YH+KSHLQKYRL K   
Sbjct:   241 KSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRLAKYMP 300

Query:   100 KETTENSKDVSCVAESQDXXXXXXXXXRMVAQDPNDG-YQVTEALRVQMEVQRRLHEQLE 158
             ++  E   D S   E +          +  A +   G  Q+TEALR+QMEVQ++LHEQLE
Sbjct:   301 EKKEEKRTDNS--EEKK------LALSKSEADEKKKGAIQLTEALRMQMEVQKQLHEQLE 352

Query:   159 VQRRLQLRIEAQGKYLQSILEKACK 183
             VQR LQLRIE   KYL+ +LE+  K
Sbjct:   353 VQRVLQLRIEEHAKYLEKMLEEQRK 377

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.3491.1 hypothetical protein (285 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	306
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	4e-26
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-24
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	2e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-08

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 97.3 bits (243), Expect = 4e-26
 Identities = 42/51 (82%), Positives = 46/51 (90%)

Query: 136 GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN 186
           G Q+TEALR+QMEVQRRLHEQLEVQR LQ+RIEAQGKYLQ ILEKA K L+
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 93.2 bits (232), Expect = 2e-24
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 96
          KPR+ WT +LHDRF+ AV +LGGPD ATPK I+  M V GLT   + SHLQKYRL +
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 40  KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
           K ++ WT ELH RFV AV QLG  +KA P  I+  MGV+ LT +++ SHLQKYR
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
          R  WT E  +  ++AV + G  +      I + +   G T    K+    Y 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.92
PLN03162	526	golden-2 like transcription factor; Provisional	99.89
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.86
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.39
smart00426	68	TEA TEA domain.	90.77
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	89.9

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.92  E-value=1.7e-25  Score=163.86  Aligned_cols=51  Identities=88%  Similarity=1.125  Sum_probs=48.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 021872          136 GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN  186 (306)
Q Consensus       136 ~~qi~EALr~QmEVQrrLhEQLEVQR~LQlRIEaQGKYLqsiLekaq~~L~  186 (306)
                      +++|+||||+||||||||||||||||+||+|||||||||++|||||+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999999999999999999999863

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.89  E-value=5.1e-24  Score=207.11  Aligned_cols=62  Identities=48%  Similarity=0.748  Sum_probs=58.9

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhcccc
Q 021872           36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA   98 (306)
Q Consensus        36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~~~   98 (306)
                      ...+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.+++
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~  292 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH  292 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence            34789999999999999999999999 799999999999999999999999999999998874

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.86  E-value=4.7e-22  Score=147.78  Aligned_cols=56  Identities=63%  Similarity=0.997  Sum_probs=54.4

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhc
Q 021872           40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG   95 (306)
Q Consensus        40 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~   95 (306)
                      |+|++||+|+|++|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.39  E-value=0.00043  Score=48.62  Aligned_cols=48  Identities=31%  Similarity=0.439  Sum_probs=41.5

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhh
Q 021872           42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR   93 (306)
Q Consensus        42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyR   93 (306)
                      |-.||+|=++.|++||.++|. +  .-+.|-+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999993 2  6899999998 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=90.77  E-value=0.27  Score=38.69  Aligned_cols=46  Identities=22%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCChh-HHHHh---hC-----------CCCC--CHHHHHHhhhh
Q 021872           44 RWTAELHDRFVDAVTQLGGPDKATPK-TIMRT---MG-----------VKGL--TLYHLKSHLQK   91 (306)
Q Consensus        44 rWT~ELH~rFV~AV~qLGG~~kAtPK-~Il~l---M~-----------v~gL--T~~hVkSHLQK   91 (306)
                      .|.++|-..|++|+...-  ...+-| .+...   .|           ..|.  |..+|.||+|.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999998775  222222 22211   01           2454  77899999984

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=89.90  E-value=0.85  Score=34.11  Aligned_cols=34  Identities=44%  Similarity=0.507  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 021872          151 RRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL  185 (306)
Q Consensus       151 rrLhEQLEVQR~LQlRIEaQGKYLqsiLekaq~~L  185 (306)
                      --|..|+||||+|.=.+|.| |-||.-+|...+-|
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl   39 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL   39 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence            56889999999999999999 67887777665655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	306
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		1e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG 95
          T   KPR+ WT ELH++F+ AV  L G ++A PK I+  M V  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	2e-26

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 98.1 bits (244), Expect = 2e-26
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG 95
          T   KPR+ WT ELH++F+ AV  LG  ++A PK I+  M V  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 96 KQ 97
           +
Sbjct: 60 LK 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	306
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.96
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	90.07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	87.57
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	86.93
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	86.12
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	85.38
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	85.05
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	82.34
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	81.34

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.96  E-value=5.5e-30  Score=193.80  Aligned_cols=62  Identities=45%  Similarity=0.763  Sum_probs=58.9

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhcccc
Q 021872           36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA   98 (306)
Q Consensus        36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~~~   98 (306)
                      ++++|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..++
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999 799999999999999999999999999999998764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.07  E-value=0.53  Score=34.73  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=41.6

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCCh---hHHHHhhCCCCCCHHHHHHhhhhhhhcc
Q 021872           39 PKPRLRWTAELHDRFVDAVTQLGGPDKATP---KTIMRTMGVKGLTLYHLKSHLQKYRLGK   96 (306)
Q Consensus        39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtP---K~Il~lM~v~gLT~~hVkSHLQKyRl~~   96 (306)
                      ...+=.||+|=++.|+++|..+| .+...|   +.|-+.|  +|=|..+|+.|.++|-...
T Consensus         5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            34455899999999999999999 333223   4555554  6899999999999996543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=87.57  E-value=1.4  Score=33.58  Aligned_cols=50  Identities=10%  Similarity=0.108  Sum_probs=40.5

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhh
Q 021872           39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL   94 (306)
Q Consensus        39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl   94 (306)
                      ...+-.||+|=+.+|++||...|+    .=+.|-+.|  ++=|..+++.|.++|-+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~~i   64 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRLPI   64 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTSCC
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHhcc
Confidence            344678999999999999999994    346777776  47899999999988733

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=86.93  E-value=1.9  Score=31.68  Aligned_cols=52  Identities=21%  Similarity=0.347  Sum_probs=41.6

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhcc
Q 021872           39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK   96 (306)
Q Consensus        39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~   96 (306)
                      ...+-.||+|=++.|+++|..+|-    .=+.|-+.  ++|=|-.+||.|.++|-...
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence            345668999999999999999993    44666665  47899999999999885443

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=86.12  E-value=2.7  Score=29.81  Aligned_cols=51  Identities=22%  Similarity=0.210  Sum_probs=40.0

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhh
Q 021872           39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL   94 (306)
Q Consensus        39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl   94 (306)
                      .-.|-.||+|=.+++++||..+| .  ..=+.|-+.|  +|=|-.+++.|.++|-.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            44566899999999999999999 1  1236666666  68899999999887744

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=85.38  E-value=1.4  Score=44.12  Aligned_cols=54  Identities=24%  Similarity=0.329  Sum_probs=44.9

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhcccc
Q 021872           39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA   98 (306)
Q Consensus        39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~~~   98 (306)
                      .+..-+||+|=|..|++|+.+.|-    .=+.|-+.++-  =|..+|++|.++||.....
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~l  430 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNI  430 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhCh
Confidence            456789999999999999999992    47788888664  4899999999999886543

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=85.05  E-value=1.2  Score=35.03  Aligned_cols=58  Identities=22%  Similarity=0.328  Sum_probs=37.0

Q ss_pred             CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHh---h-C-----------C--CCCCHHHHHHhhhhhhhccc
Q 021872           38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRT---M-G-----------V--KGLTLYHLKSHLQKYRLGKQ   97 (306)
Q Consensus        38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~l---M-~-----------v--~gLT~~hVkSHLQKyRl~~~   97 (306)
                      +++..=+|.++|-..|++|+...--....+  -+|..   | |           .  +-=|+.+|.||||.-+..+.
T Consensus         2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~   76 (82)
T 2hzd_A            2 DNDAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS   76 (82)
T ss_dssp             CGGGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred             CCCcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence            345566899999999999998875111222  22211   1 1           0  23378899999998766544

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=82.34  E-value=2.2  Score=39.33  Aligned_cols=55  Identities=22%  Similarity=0.277  Sum_probs=45.8

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhccc
Q 021872           37 TDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ   97 (306)
Q Consensus        37 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~~   97 (306)
                      ...+..-+||+|=++.|++|+...|-    .=..|-++  |++=|..+||+|..+||....
T Consensus       128 ~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          128 VIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence            45577889999999999999999992    36777776  578899999999999986543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=81.34  E-value=2.1  Score=32.24  Aligned_cols=48  Identities=17%  Similarity=0.377  Sum_probs=37.6

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChh---HHHHhhCCCCCCHHHHHHhhhhhhhc
Q 021872           42 RLRWTAELHDRFVDAVTQLGGPDKATPK---TIMRTMGVKGLTLYHLKSHLQKYRLG   95 (306)
Q Consensus        42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK---~Il~lM~v~gLT~~hVkSHLQKyRl~   95 (306)
                      +-.||.|=+..|+.|+..+++   -||.   .|-+.|   |=|..+|+.|.+++...
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence            336999999999999999983   3664   465665   67999999998877443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	306
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	2e-24

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.5 bits (227), Expect = 2e-24
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
          T   KPR+ WT ELH++F+ AV  LG  ++A PK I+  M V  LT  ++ SHLQK+R+
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	306
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	91.05
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	89.83

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.6e-27  Score=177.22  Aligned_cols=62  Identities=45%  Similarity=0.755  Sum_probs=58.3

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhcccc
Q 021872           36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA   98 (306)
Q Consensus        36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~~~~   98 (306)
                      |.++|+|++||+|||++||+||++||+ ++||||.|+++|+|+|||+.||+|||||||+...+
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            457999999999999999999999985 89999999999999999999999999999998654

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.23  Score=34.05  Aligned_cols=48  Identities=21%  Similarity=0.376  Sum_probs=39.8

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhhhhc
Q 021872           42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG   95 (306)
Q Consensus        42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKyRl~   95 (306)
                      ..+||+|=++.|++||...|.    .=..|-+.|  ++=|..+|++|.++|-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            368999999999999999993    456776665  588999999999988554

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.38  Score=31.62  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCCCHHHHHHhhhhh
Q 021872           44 RWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY   92 (306)
Q Consensus        44 rWT~ELH~rFV~AV~qLGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKy   92 (306)
                      .||.|=+.+|++||.+.| .  ..=+.|-+.|+  +=|..+++.|.++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~--~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-F--GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-T--TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-C--ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            499999999999999998 1  13466767765  66999999999887