Citrus Sinensis ID: 021913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MLARMLLKPSHFRLLTNLSPISHFFPQNPGVPPLISFSRFFSSNNNSNDNNQSSSNVWNLSREIDGKFDQLFGDTEAKDVGQDELFNAEENQSWSFEEGVKDGSFEIGESAGTFDETGRESGEADEESKEELSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccEEEEEccccHHHHcccHHHHHHHHHHHHHHcccccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHcccccHHHHHHccccccccccccccccccEccccEEEccccccccccccccEEEEEccccccccccccccHcccccccccccccccccccHHcccccccEEEEcccccEccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHcccHccccccHHHHHHccEEccccccccEEEEEEEccccEEEEccccHHHHccHHHHHHHHHccEEEEcccccEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
mlarmllkpshfrlltnlspishffpqnpgvpplisfsrffssnnnsndnnqsssnVWNLSREIDGKfdqlfgdteakdvgqdelfnaeenqswsfeegvkdgsfeigesagtfdetgresgeadeesKEELSEEELRMLQLEEKQLTAelqgpsrafGDLIAASGITDAMLESLIALkdlegveglpplseiEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEkgraygtgrrkcsiarvwiqpgdgkfivndkefdvyfpmLDHRAallrpfsetktlglwdvdctvkgggvsgelrcf
Flexible Loop (DISEMBL)
mlarmllkPSHFRLLTNLSPISHFFPQNPGVPPLISFSRFFSSNNNSNDNNQSSSNVWNLSREIDGKFDQLFGDTEAKDVGQDELFNAEENQSWSFEEGVKDGSFEIGEsagtfdetgresgeadeeskEELSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIALkdlegveglpplseieemryekntrkstraeierqkqeevakarvrqvdekgraygtgrrkcsiarvwiqpgdgkFIVNDKEFDVYFPMLDHRAALLRPFsetktlglwdvdctvkgggvsgelrcf
Low Complexity Region (SEG)
MLARMLLKPSHFRLLTNLSPISHFFPQNPGVPPLIsfsrffssnnnsndnnqsssnvwnLSREIDGKFDQLFGDTEAKDVGQDELFNAEENQSWSFEEGVKDGSFEIGESAGTFDETGResgeadeeskeelseeelrmlqleeKQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF
Disordered region (IsUnstruct)
*********SHFRLLTNLSPISHFFPQNPGVPPLISFSRF***********************I**KFDQLF************************************************************************************AFGDLIAASGITDAMLESLIALKDLEGV***********************************************AYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGV*******
Disordered Region (DISOPRED)
***R***KPSHFRLLTNLSPISHFFPQNPGVPPLIS*********************************************************************************GRESGEADEESKEELSEEELRM************************ASGITDAMLESLIALKDLEGVEGLPPLSEIEE*******************************DEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF
Disordered Region (DISEMBL)
MLARMLLKPSHFRLLTNLSPISHFFPQNPGVPPLISFSRFFSSNNN**********VWNLSREIDGKFDQLFGDTEAKDVGQDELFNAEENQSWSFEEGVKDGSFEIGESAGT***********************LRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF
Disordered Region (DISPRO)
*LAR*LLKPSHFRLLTNLSPISHFFPQNPGVPPLISFSRFFSSN**********SNVWN*******KFDQLFGDT*A***************SWSFEEGVKDGSFEIGESAGTFDETGR*S**********LSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKN******************KARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGG*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLARMLLKPSHFRLLTNLSPISHFFPQNPGVPPLISFSRFFSSNNNSNDNNQSSSNVWNLSREIDGKFDQLFGDTEAKDVGQDELFNAEENQSWSFEEGVKDGSFEIGESAGTFDETGRESGEAxxxxxxxxxxxxxxxxxxxxxxxxxxLQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
A8GMN0	161	30S ribosomal protein S9	yes	no	0.308	0.583	0.448	1e-18
Q4UKS7	161	30S ribosomal protein S9	yes	no	0.304	0.577	0.432	6e-18
Q92IV4	159	30S ribosomal protein S9	yes	no	0.321	0.616	0.428	9e-18
A8F0Z2	159	30S ribosomal protein S9	yes	no	0.321	0.616	0.428	2e-17
Q1RK10	164	30S ribosomal protein S9	yes	no	0.252	0.469	0.493	3e-17
A8GXN6	164	30S ribosomal protein S9	yes	no	0.252	0.469	0.493	3e-17
C3PMT0	159	30S ribosomal protein S9	yes	no	0.321	0.616	0.418	3e-17
C4K0V7	159	30S ribosomal protein S9	yes	no	0.321	0.616	0.418	5e-17
A8I7Z9	154	30S ribosomal protein S9	yes	no	0.272	0.538	0.481	5e-17
A8GRA1	159	30S ribosomal protein S9	yes	no	0.321	0.616	0.418	5e-17

>sp|A8GMN0|RS9_RICAH 30S ribosomal protein S9 OS=Rickettsia akari (strain Hartford) GN=rpsI PE=3 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 4/98 (4%)

Query: 208 AEIERQKQEE----VAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDV 263
           A++E+   +E    V K   +++D  G+ Y TG+RK ++ARVWI+ G GK +VN K  D 
Sbjct: 9   AKVEKHLAKEPLKPVLKTPTQKIDSSGKFYATGKRKNAVARVWIKVGKGKIVVNKKTIDQ 68

Query: 264 YFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGE 301
           YFP   +   +LRPF  T T+  +DV CTV+GGGVSG+
Sbjct: 69  YFPSETYVKTILRPFVLTNTIDQYDVICTVRGGGVSGQ 106

Rickettsia akari (strain Hartford) (taxid: 293614)

>sp|Q4UKS7|RS9_RICFE 30S ribosomal protein S9 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=rpsI PE=3 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 4/97 (4%)

Query: 209 EIERQKQEEVAKARVR----QVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVY 264
           ++E+Q   E+ K  ++    ++D  G+ Y TG+RK +IARVW++ G GK +VN K  D Y
Sbjct: 10  KVEKQLTRELLKPVLKTPKEKIDNSGKFYATGKRKNAIARVWLKVGKGKIVVNKKTIDQY 69

Query: 265 FPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGE 301
           FP   +   +L+PF  TKT+  +DV CTV+GGG+SG+
Sbjct: 70  FPSETYVKTILQPFVLTKTIDQYDVICTVRGGGISGQ 106

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q92IV4|RS9_RICCN 30S ribosomal protein S9 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=rpsI PE=3 SV=1

 Score = 91.3 bits (225), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 63/98 (64%)

Query: 204 KSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDV 263
           K+ + E +  K+  V K    Q+D  G+ Y TG+RK +IARVW++ G GK +VN+K    
Sbjct: 7   KTEKVEKQLTKEPLVLKTPKEQIDNLGKFYATGKRKNAIARVWLKVGKGKIVVNNKTIAQ 66

Query: 264 YFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGE 301
           YFP   +   +L+PF  TKT+  +D+ CTV+GGG+SG+
Sbjct: 67  YFPSETYVKTILQPFVLTKTIDQYDIICTVRGGGISGQ 104

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

>sp|A8F0Z2|RS9_RICM5 30S ribosomal protein S9 OS=Rickettsia massiliae (strain Mtu5) GN=rpsI PE=3 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 62/98 (63%)

Query: 204 KSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDV 263
           K+ + E +  K+  V K    ++D  G+ Y TG+RK +IARVW++ G GK +VN K    
Sbjct: 7   KTEKVEKQLTKEPLVLKTPKEKIDNSGKFYATGKRKNAIARVWLKVGKGKIVVNKKTIAQ 66

Query: 264 YFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGE 301
           YFP   +   +L+PF  TKT+  +DV CTV+GGG+SG+
Sbjct: 67  YFPSETYVKTILQPFVLTKTIDQYDVICTVRGGGISGQ 104

Rickettsia massiliae (strain Mtu5) (taxid: 416276)

>sp|Q1RK10|RS9_RICBR 30S ribosomal protein S9 OS=Rickettsia bellii (strain RML369-C) GN=rpsI PE=3 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 225 QVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTL 284
           ++D  GR Y TG+RK +IARVW++PG G+ IVN K  D YF        +L+PF+ TKT 
Sbjct: 33  KMDNSGRFYATGKRKNAIARVWLKPGKGQVIVNKKSLDQYFASETQVKTILQPFTLTKTN 92

Query: 285 GLWDVDCTVKGGGVSGE 301
             +D+ CTV+GGG+SG+
Sbjct: 93  NQYDIVCTVRGGGISGQ 109

Rickettsia bellii (strain RML369-C) (taxid: 336407)

>sp|A8GXN6|RS9_RICB8 30S ribosomal protein S9 OS=Rickettsia bellii (strain OSU 85-389) GN=rpsI PE=3 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query: 225 QVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTL 284
           ++D  GR Y TG+RK +IARVW++PG G+ IVN K  D YF        +L+PF+ TKT 
Sbjct: 33  KMDNSGRFYATGKRKNAIARVWLKPGKGQVIVNKKSLDQYFASETQVKTILQPFTLTKTN 92

Query: 285 GLWDVDCTVKGGGVSGE 301
             +D+ CTV+GGG+SG+
Sbjct: 93  NQYDIVCTVRGGGISGQ 109

Rickettsia bellii (strain OSU 85-389) (taxid: 391896)

>sp|C3PMT0|RS9_RICAE 30S ribosomal protein S9 OS=Rickettsia africae (strain ESF-5) GN=rpsI PE=3 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 62/98 (63%)

Query: 204 KSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDV 263
           K+ + E +  K+  V K    ++D  G+ Y TG+RK +IARVW++ G GK +VN K    
Sbjct: 7   KTEKVEKQLTKEPLVLKTPKEKIDNLGKFYATGKRKNAIARVWLKVGKGKIVVNKKTIAQ 66

Query: 264 YFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGE 301
           YFP   +   +L+PF  TKT+  +D+ CTV+GGG+SG+
Sbjct: 67  YFPSETYVKTILKPFVLTKTIDQYDIICTVRGGGISGQ 104

Rickettsia africae (strain ESF-5) (taxid: 347255)

>sp|C4K0V7|RS9_RICPU 30S ribosomal protein S9 OS=Rickettsia peacockii (strain Rustic) GN=rpsI PE=3 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 62/98 (63%)

Query: 204 KSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDV 263
           K+ + E +  K+  V K    ++D  G+ Y TG+RK +IARVW++ G GK +VN K    
Sbjct: 7   KTEKVEKQLTKEPLVLKTPKEKIDNLGKFYATGKRKNAIARVWLKVGKGKIVVNKKTIAQ 66

Query: 264 YFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGE 301
           YFP   +   +L+PF  TKT+  +D+ CTV+GGG+SG+
Sbjct: 67  YFPSETYVKTILQPFVLTKTIDQYDIICTVRGGGISGQ 104

Rickettsia peacockii (strain Rustic) (taxid: 562019)

>sp|A8I7Z9|RS9_AZOC5 30S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsI PE=3 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 57/83 (68%)

Query: 219 AKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPF 278
           A   V+++D+ GRAY TG+RK ++ARVW++PG GK IVND+  +VYF     R  + +PF
Sbjct: 17  APVHVQKLDKFGRAYATGKRKDAVARVWVRPGTGKIIVNDRPVEVYFARPVLRLIINQPF 76

Query: 279 SETKTLGLWDVDCTVKGGGVSGE 301
           +     G +DV CTV GGG+SG+
Sbjct: 77  AAAAREGAYDVVCTVSGGGLSGQ 99

Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) (taxid: 438753)

>sp|A8GRA1|RS9_RICRS 30S ribosomal protein S9 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rpsI PE=3 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 62/98 (63%)

Query: 204 KSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDV 263
           K+ + E +  K+  V K    ++D  G+ Y TG+RK +IARVW++ G GK +VN K    
Sbjct: 7   KTEKVEKQLTKEPLVLKTPKEKIDNLGKFYATGKRKNAIARVWLKVGKGKIVVNKKTIAQ 66

Query: 264 YFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGE 301
           YFP   +   +L+PF  TKT+  +D+ CTV+GGG+SG+
Sbjct: 67  YFPSETYVKTILQPFVLTKTIDQYDIICTVRGGGISGQ 104

Rickettsia rickettsii (strain Sheila Smith) (taxid: 392021)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
225464944	357	PREDICTED: 28S ribosomal protein S9, mit	0.940	0.803	0.606	2e-92
255545214	398	ribosomal protein S9, putative [Ricinus	0.977	0.748	0.568	1e-90
449456315	405	PREDICTED: 28S ribosomal protein S9, mit	0.970	0.730	0.537	2e-86
356543716	411	PREDICTED: uncharacterized protein LOC10	0.977	0.725	0.495	2e-78
356540936	415	PREDICTED: uncharacterized protein LOC10	0.983	0.722	0.482	2e-77
449531487	209	PREDICTED: 30S ribosomal protein S9-like	0.501	0.732	0.836	2e-71
357116178	412	PREDICTED: uncharacterized protein LOC10	0.567	0.419	0.702	3e-66
30693135	430	small subunit ribosomal protein S9 [Arab	0.498	0.353	0.782	4e-66
51971519	430	hypothetical protein [Arabidopsis thalia	0.498	0.353	0.782	4e-66
297819524	430	ribosomal protein S9 family protein [Ara	0.498	0.353	0.776	1e-65

>gi|225464944|ref|XP_002274146.1| PREDICTED: 28S ribosomal protein S9, mitochondrial [Vitis vinifera] gi|147846771|emb|CAN80622.1| hypothetical protein VITISV_043432 [Vitis vinifera] gi|296084909|emb|CBI28318.3| unnamed protein product [Vitis vinifera]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 193/318 (60%), Positives = 229/318 (72%), Gaps = 31/318 (9%)

Query: 1   MLARMLLKPSHFRLLTNLSPISHFFPQNPGVPPLISFSRFFSSNNNSN---DNNQSSSNV 57
           MLAR + KPS+FRLLT LS  S   P NP      +  RFFS+N+N+N     ++S+ N 
Sbjct: 1   MLARFVSKPSNFRLLTLLSTKSQSHPPNPK----FTLPRFFSTNHNNNDNNTKDRSTFNS 56

Query: 58  WNLSREIDGKFDQLFGDTEAKDVGQDELFNAE--------ENQSWSFEE-----GVKDGS 104
           W +S+E DG  D + G       G  +   A         ++  W+FEE      V D  
Sbjct: 57  WKISQEYDGNGDSIVGQEAGTLAGLTDEGGAAPAEDESWLKDSPWTFEEEREKGNVLDFG 116

Query: 105 FEIGESAGTFDETGRESGEADEESKEELSEEELRMLQLEEKQLTAELQGPSRAFGDLIAA 164
           +E+ E        G E+    + SKE        +L+ EE  L+A L+GP+RAFGDLIAA
Sbjct: 117 WELQEEVRA---VGGETTIEGDGSKE--------LLEKEESALSAVLKGPNRAFGDLIAA 165

Query: 165 SGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVR 224
           SGITDAML+SLIALKDLEGVEGLPPLSEIE++RYEKNTRKSTRAEIERQKQEEVAKARVR
Sbjct: 166 SGITDAMLDSLIALKDLEGVEGLPPLSEIEDIRYEKNTRKSTRAEIERQKQEEVAKARVR 225

Query: 225 QVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTL 284
           QVDEKGRAYGTGRRKCSIARVW+QPGDGKF++NDK+FDVYFPMLDHRAALLRPFSETKTL
Sbjct: 226 QVDEKGRAYGTGRRKCSIARVWVQPGDGKFMINDKQFDVYFPMLDHRAALLRPFSETKTL 285

Query: 285 GLWDVDCTVKGGGVSGEL 302
           GLWDV+CTVKGGG+SG++
Sbjct: 286 GLWDVNCTVKGGGLSGQV 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545214|ref|XP_002513668.1| ribosomal protein S9, putative [Ricinus communis] gi|223547576|gb|EEF49071.1| ribosomal protein S9, putative [Ricinus communis]

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 198/348 (56%), Positives = 235/348 (67%), Gaps = 50/348 (14%)

Query: 1   MLARMLLKPSHFRLLTNLSPISHFFPQNPGVPPLISFSRFFSSNNNSNDNNQSSSNVWNL 60
           ML+R+L K SHFRLL+NLS  SH +  +P +       R FSSN N+N+NN+  S+    
Sbjct: 1   MLSRLLPKSSHFRLLSNLSSKSHSYQHSPRISNSTFLLRHFSSNQNNNNNNEDQSSSSIW 60

Query: 61  SREIDGKFDQLF-------------------------------GDTEAKDVGQ------- 82
               D KFD  F                               G  ++KD+ Q       
Sbjct: 61  KLSSDEKFDSFFAADSKEGSLAGITDSPVHNQLQESWLEEEEGGSNDSKDIFQGIEKESA 120

Query: 83  -----DELFNAEENQSWSFE--EGVKDGSFEIGE-SAGTFDETGRESGEADEESKEELSE 134
                +E   +EE + W+ +  E  KD  F+I E +A T  E   ES    E+ K E   
Sbjct: 121 GGEDNNEWLQSEEYKMWNLDDAEDQKDHVFDIEEINADTSSEFTTESSANVEKEKTE--- 177

Query: 135 EELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIE 194
            E +ML+ EEK+LTA L+G +RAFGDLIAASGITDAML+SLIAL+D EGVEGLPPLSEIE
Sbjct: 178 -EQKMLEAEEKELTAVLKGSNRAFGDLIAASGITDAMLDSLIALRDFEGVEGLPPLSEIE 236

Query: 195 EMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKF 254
           +MRYEKNTRKSTRA+IERQKQEEVAK+RVRQVDEKGRAYGTGRRKCS+ARVWI+PGDGKF
Sbjct: 237 DMRYEKNTRKSTRADIERQKQEEVAKSRVRQVDEKGRAYGTGRRKCSVARVWIEPGDGKF 296

Query: 255 IVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGEL 302
           IVNDK+FDVYFPMLDHRAALLRPFSETKTLGLWDV CTVKGGG +G++
Sbjct: 297 IVNDKQFDVYFPMLDHRAALLRPFSETKTLGLWDVKCTVKGGGTTGQV 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456315|ref|XP_004145895.1| PREDICTED: 28S ribosomal protein S9, mitochondrial-like [Cucumis sativus]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 192/357 (53%), Positives = 228/357 (63%), Gaps = 61/357 (17%)

Query: 1   MLARMLLKPSHFRLLTNLSPISHFFPQNPG-VPPLISFSRFFSSNNNSND-------NNQ 52
           ML+R+L KPSH RLL  +S       + P   P      RFFS+NNN ++        +Q
Sbjct: 1   MLSRLLPKPSHVRLLALIST------KPPAQTPSFQLLPRFFSTNNNGSNNNNNSGSKDQ 54

Query: 53  SSSNVWNLSREIDGKFDQLF----------------------------GDTEA------- 77
            +SN+W +S+E D  FDQLF                            GD +A       
Sbjct: 55  PTSNIWKISQENDENFDQLFTQEADNLDGIAEEDSAPRKDDSWVTSKSGDQDAEGDLFAS 114

Query: 78  --------KD-VGQDELFNAEENQSWSFEEGVKDGSFEIGESAGTFDETGRESGEADEES 128
                   KD V  DE    ++   WS  E  K   F I E      E G    E D ES
Sbjct: 115 LEKEVQGNKDGVSHDEWPMEKKFDVWSLVEEEKSDVFNIEEGEVKIGEFGDGLKEVDTES 174

Query: 129 KEE---LSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDLEGVE 185
            E+   L +E    L+ EE++LTA L+GP+RAFGDLIAASG TD M++SL+ALKDLEG+E
Sbjct: 175 SEDARKLEKENAMKLEKEEQELTAVLKGPNRAFGDLIAASGFTDDMIDSLMALKDLEGIE 234

Query: 186 GLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARV 245
           GLPPL+EIE+MRYEKNTRKS+RAEIERQKQEEVAKARVRQVD KGRAYGTGRRKCSIARV
Sbjct: 235 GLPPLTEIEDMRYEKNTRKSSRAEIERQKQEEVAKARVRQVDNKGRAYGTGRRKCSIARV 294

Query: 246 WIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGEL 302
           WIQPG+GKF+VNDKEFDVYFPMLD RA LL+PF+ETKTLGLWDV CTVKGGG +G++
Sbjct: 295 WIQPGNGKFVVNDKEFDVYFPMLDSRAILLQPFAETKTLGLWDVSCTVKGGGTTGQV 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543716|ref|XP_003540306.1| PREDICTED: uncharacterized protein LOC100796918 [Glycine max]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 179/361 (49%), Positives = 224/361 (62%), Gaps = 63/361 (17%)

Query: 1   MLARMLLKPSHFRLLTNLSPISHFFPQNPGVPPL--ISFSRFFSSNNNSNDNNQS----S 54
           ML+R++ KPSH R   ++ P+    P +  V P   +   + FS+N    ++       S
Sbjct: 1   MLSRLIPKPSHLRRFLSI-PLK---PSHTAVNPFFTVVVPKHFSTNRGGGNDGDGKDPFS 56

Query: 55  SNVWNLSREIDGKFDQLFGDTE-------AKDVG-------QDELFNAEENQSWSFEEGV 100
           S VW   RE + K D  F + E         D G       ++  +  EE Q W  E+G+
Sbjct: 57  SRVWKDFRETEEKLDAFFEEEEECGSLAGMNDDGSSGGRRREERGWLQEEEQGWLQEKGL 116

Query: 101 KDGSF---------EIGESAGT-FDETG------------RESGEADEES-----KEELS 133
            D            E G++ G  FDE+                GE D++      KE++ 
Sbjct: 117 DDADEDAIFKGIDEESGDAGGGGFDESNFGVRAGEDFKPWSMKGEEDDKKDVFDFKEDVG 176

Query: 134 EE------------ELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDL 181
            E            ++  L+ EE+ LTA ++GP RAFGDLIAASGITD ML+SLIALKD 
Sbjct: 177 HEGNFTALDINPKVDVEQLEKEEQALTAVVKGPKRAFGDLIAASGITDEMLDSLIALKDF 236

Query: 182 EGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCS 241
           +GV GLPPLS IE+MRYEKNTRKSTR E+ER KQEE AKARV+QVD+KGRAYGTGRRKCS
Sbjct: 237 DGVHGLPPLSVIEDMRYEKNTRKSTRGEMERLKQEEAAKARVKQVDDKGRAYGTGRRKCS 296

Query: 242 IARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGE 301
           +ARVW+QPG+G+F VNDKEFDVYFPML+HRA LLRPFSETKTLGLWDVDCTVKGGGVSG+
Sbjct: 297 VARVWVQPGNGQFTVNDKEFDVYFPMLEHRATLLRPFSETKTLGLWDVDCTVKGGGVSGQ 356

Query: 302 L 302
           +
Sbjct: 357 V 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540936|ref|XP_003538940.1| PREDICTED: uncharacterized protein LOC100797241 [Glycine max]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/363 (48%), Positives = 219/363 (60%), Gaps = 63/363 (17%)

Query: 1   MLARMLLKPSHFRLLTNLSPISHFFPQNPGVPPLISFSRFFSSNNNSND-----NNQSSS 55
           ML+R++ KPSH R   +        P NP    ++   + FS+N    +      +  SS
Sbjct: 1   MLSRLIPKPSHLRRFLSFPLKPSHAPANPYFTVVVP--KHFSTNRGGGNNDGDGKDPFSS 58

Query: 56  NVWNLSREIDGKFDQLFGDTEAKDVGQDELFN-----------------AEENQSWSFEE 98
            VW   RE + K D  F + E ++ G     N                  EE Q W  ++
Sbjct: 59  RVWKDFRETEEKLDAFFEEEEEEESGSLVRMNDDGGSSGGRRRDERGWLQEEEQGWLQQK 118

Query: 99  GVKDGSFEI-----------GESAGTFDET--GRESGE-------ADEESKEEL------ 132
           G+ D   +                G FDE+  G  +GE        +EE KE++      
Sbjct: 119 GLDDADEDAIFKGIDEESGGEAGGGGFDESNFGVGAGEDFKPWSMKEEEDKEDVFDFKDD 178

Query: 133 -------------SEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIALK 179
                         + ++  L+ EE+ LTA ++GP RAFGDLIAASGITD ML+SLIALK
Sbjct: 179 VGHAGDITALDIKPKVDVEQLEKEEQALTAIVKGPKRAFGDLIAASGITDEMLDSLIALK 238

Query: 180 DLEGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRK 239
           D +GV GLPPLS IE+MRYEKNTRKSTR E+ER KQEE AKARV+QVD+KGRAYGTGRRK
Sbjct: 239 DFDGVHGLPPLSVIEDMRYEKNTRKSTRGEMERLKQEEAAKARVKQVDDKGRAYGTGRRK 298

Query: 240 CSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVS 299
           CS+ARVW+QPG+G+F+VNDKEFDVYFPML+HRA LLRPFSETKTLGLWDV CTVKGGGVS
Sbjct: 299 CSVARVWVQPGNGQFVVNDKEFDVYFPMLEHRATLLRPFSETKTLGLWDVSCTVKGGGVS 358

Query: 300 GEL 302
           G++
Sbjct: 359 GQV 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531487|ref|XP_004172717.1| PREDICTED: 30S ribosomal protein S9-like [Cucumis sativus]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/153 (83%), Positives = 144/153 (94%)

Query: 150 ELQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAE 209
           E+  P+RAFGDLIAASG TD M++SL+ALKDLEG+EGLPPL+EIE+MRYEKNTRKS+RAE
Sbjct: 3   EVLSPNRAFGDLIAASGFTDDMIDSLMALKDLEGIEGLPPLTEIEDMRYEKNTRKSSRAE 62

Query: 210 IERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLD 269
           IERQKQEEVAKARVRQVD KGRAYGTGRRKCSIARVWIQPG+GKF+VNDKEFDVYFPMLD
Sbjct: 63  IERQKQEEVAKARVRQVDNKGRAYGTGRRKCSIARVWIQPGNGKFVVNDKEFDVYFPMLD 122

Query: 270 HRAALLRPFSETKTLGLWDVDCTVKGGGVSGEL 302
            RA LL+PF+ETKTLGLWDV CTVKGGG +G++
Sbjct: 123 SRAILLQPFAETKTLGLWDVSCTVKGGGTTGQV 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357116178|ref|XP_003559860.1| PREDICTED: uncharacterized protein LOC100828544 [Brachypodium distachyon]

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/178 (70%), Positives = 148/178 (83%), Gaps = 5/178 (2%)

Query: 125 DEESKEELSEEELRMLQLEEKQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDLEGV 184
           DE+++ +  E   R     E+QL   L+GP RAFGDLI+ASGIT+ M++SLI LKD  G+
Sbjct: 186 DEDAERQRQENSAR-----EQQLMEILKGPDRAFGDLISASGITEDMIDSLILLKDARGI 240

Query: 185 EGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIAR 244
            GLPPLSEI++   +K    S+RAE+ERQKQEE+AKARVRQVDEKGRAYGTG+RKCSIAR
Sbjct: 241 PGLPPLSEIQDRAIQKMNATSSRAEVERQKQEEIAKARVRQVDEKGRAYGTGKRKCSIAR 300

Query: 245 VWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGEL 302
           VWIQPGDGKFIVNDK+FDVYFP+LDHRA LLRPF+ TKTLGLWDV CTVKGGGVSG++
Sbjct: 301 VWIQPGDGKFIVNDKQFDVYFPILDHRADLLRPFNVTKTLGLWDVACTVKGGGVSGQV 358

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693135|ref|NP_190477.2| small subunit ribosomal protein S9 [Arabidopsis thaliana] gi|22655228|gb|AAM98204.1| unknown protein [Arabidopsis thaliana] gi|30387523|gb|AAP31927.1| At3g49080 [Arabidopsis thaliana] gi|51971441|dbj|BAD44385.1| hypothetical protein [Arabidopsis thaliana] gi|332644976|gb|AEE78497.1| small subunit ribosomal protein S9 [Arabidopsis thaliana]

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/152 (78%), Positives = 138/152 (90%)

Query: 151 LQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAEI 210
           ++GP RAFGDLIA SGITD ML+SLIALKD +GVEGLPPL+EIE +R EK+++KS+RAEI
Sbjct: 225 IKGPDRAFGDLIAKSGITDEMLDSLIALKDFQGVEGLPPLTEIENLRREKSSKKSSRAEI 284

Query: 211 ERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDH 270
           E Q QE++AKARVRQVDE GRAYGTGRRKCSIARVWIQPG+GKF VN+KEFDVYFPMLDH
Sbjct: 285 ELQMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVYFPMLDH 344

Query: 271 RAALLRPFSETKTLGLWDVDCTVKGGGVSGEL 302
           RAALLRP +ETKTLG WD+ CTVKGGG +G++
Sbjct: 345 RAALLRPLAETKTLGRWDIKCTVKGGGTTGQV 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971519|dbj|BAD44424.1| hypothetical protein [Arabidopsis thaliana]

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/152 (78%), Positives = 138/152 (90%)

Query: 151 LQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAEI 210
           ++GP RAFGDLIA SGITD ML+SLIALKD +GVEGLPPL+EIE +R EK+++KS+RAEI
Sbjct: 225 IKGPDRAFGDLIAKSGITDEMLDSLIALKDFQGVEGLPPLTEIENLRREKSSKKSSRAEI 284

Query: 211 ERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDH 270
           E Q QE++AKARVRQVDE GRAYGTGRRKCSIARVWIQPG+GKF VN+KEFDVYFPMLDH
Sbjct: 285 ELQMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVYFPMLDH 344

Query: 271 RAALLRPFSETKTLGLWDVDCTVKGGGVSGEL 302
           RAALLRP +ETKTLG WD+ CTVKGGG +G++
Sbjct: 345 RAALLRPLAETKTLGRWDIKCTVKGGGTTGQV 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819524|ref|XP_002877645.1| ribosomal protein S9 family protein [Arabidopsis lyrata subsp. lyrata] gi|297323483|gb|EFH53904.1| ribosomal protein S9 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 137/152 (90%)

Query: 151 LQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRKSTRAEI 210
           ++GP RAFGDLIA SGITD ML+SLIALKD +GVEGLPPL+EIE +R EK+++KS+RAEI
Sbjct: 225 IKGPDRAFGDLIAKSGITDEMLDSLIALKDFQGVEGLPPLTEIENLRREKSSKKSSRAEI 284

Query: 211 ERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDH 270
           E Q QE++AKARVRQVDE GRAYGTGRRKCSIARVWIQPG+GKF VN+KEFD YFPMLDH
Sbjct: 285 ELQMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDAYFPMLDH 344

Query: 271 RAALLRPFSETKTLGLWDVDCTVKGGGVSGEL 302
           RAALLRP +ETKTLG WD+ CTVKGGG +G++
Sbjct: 345 RAALLRPLAETKTLGRWDIKCTVKGGGTTGQV 376

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2101373	430	AT3G49080 [Arabidopsis thalian	0.518	0.367	0.765	4.8e-66
TIGR_CMR|SPO_1692	160	SPO_1692 "ribosomal protein S9	0.239	0.456	0.506	4.2e-15
TIGR_CMR|ECH_1018	152	ECH_1018 "ribosomal protein S9	0.281	0.565	0.443	7.1e-13
TIGR_CMR|CHY_2273	130	CHY_2273 "ribosomal protein S9	0.226	0.530	0.434	4.1e-12
TIGR_CMR|BA_0144	130	BA_0144 "ribosomal protein S9"	0.226	0.530	0.449	7.1e-12
TIGR_CMR|GSU_2875	130	GSU_2875 "ribosomal protein S9	0.226	0.530	0.405	7.1e-12
TIGR_CMR|NSE_0839	145	NSE_0839 "ribosomal protein S9	0.255	0.537	0.445	1.3e-11
UNIPROTKB|P0A7X3	130	rpsI "30S ribosomal subunit pr	0.226	0.530	0.434	5e-11
TIGR_CMR|APH_1107	149	APH_1107 "ribosomal protein S9	0.252	0.516	0.389	3.3e-10
RGD|1306558	338	Mrps9 "mitochondrial ribosomal	0.347	0.313	0.387	1.5e-09

TAIR|locus:2101373 AT3G49080 [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
 Identities = 121/158 (76%), Positives = 141/158 (89%)

Query:   145 KQLTAELQGPSRAFGDLIAASGITDAMLESLIALKDLEGVEGLPPLSEIEEMRYEKNTRK 204
             K+L   ++GP RAFGDLIA SGITD ML+SLIALKD +GVEGLPPL+EIE +R EK+++K
Sbjct:   219 KELLEVIKGPDRAFGDLIAKSGITDEMLDSLIALKDFQGVEGLPPLTEIENLRREKSSKK 278

Query:   205 STRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVY 264
             S+RAEIE Q QE++AKARVRQVDE GRAYGTGRRKCSIARVWIQPG+GKF VN+KEFDVY
Sbjct:   279 SSRAEIELQMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVY 338

Query:   265 FPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGEL 302
             FPMLDHRAALLRP +ETKTLG WD+ CTVKGGG +G++
Sbjct:   339 FPMLDHRAALLRPLAETKTLGRWDIKCTVKGGGTTGQV 376

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TIGR_CMR|SPO_1692 SPO_1692 "ribosomal protein S9" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query:   227 DEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYF--PMLDHRAALLRPFSETKTL 284
             DE GR+Y TG+RK ++ARVWI+PG GK +VN K+ D YF  P+L  +  L +PF      
Sbjct:    31 DELGRSYATGKRKDAVARVWIKPGSGKVVVNGKDQDAYFARPVL--QLILRQPFQVAGVE 88

Query:   285 GLWDVDCTVKGGGVSGE 301
             G +DV  TVKGGG++G+
Sbjct:    89 GQFDVMATVKGGGLTGQ 105

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|ECH_1018 ECH_1018 "ribosomal protein S9" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 39/88 (44%), Positives = 53/88 (60%)

Query:   214 KQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAA 273
             +Q++  KA V+ VD +GRAYGTGRRK ++ARVW+  G G   VN  +   YF        
Sbjct:    12 QQDDHIKA-VK-VDARGRAYGTGRRKEAVARVWLTVGKGNVTVNGLDIFNYFKKNTLCRK 69

Query:   274 LLRPFSETKTLGLWDVDCTVKGGGVSGE 301
             +  PF  T T G ++V  TV GGG+SG+
Sbjct:    70 VYNPFIVTSTSGCYNVVATVSGGGISGQ 97

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

TIGR_CMR|CHY_2273 CHY_2273 "ribosomal protein S9" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 163 (62.4 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 30/69 (43%), Positives = 44/69 (63%)

Query:   233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
             YGTGRRK ++ARV++ PG+G   +N K  + YFP    +  + +P   T T+G +DV   
Sbjct:     7 YGTGRRKEAVARVFVVPGEGNITINGKSLEEYFPRKTLQIIVKQPLELTNTVGKFDVKAK 66

Query:   293 VKGGGVSGE 301
             V GGG+SG+
Sbjct:    67 VHGGGISGQ 75

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_0144 BA_0144 "ribosomal protein S9" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 161 (61.7 bits), Expect = 7.1e-12, P = 7.1e-12
 Identities = 31/69 (44%), Positives = 45/69 (65%)

Query:   233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
             YGTGRRK S+ARV +  G+G+ I+N ++F+ Y P    R  + +P   T+TLG +DV   
Sbjct:     7 YGTGRRKSSVARVRLVSGEGRVIINGRDFENYIPFAALREVVKQPLVATETLGNYDVLVN 66

Query:   293 VKGGGVSGE 301
             V GGG +G+
Sbjct:    67 VNGGGYTGQ 75

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_2875 GSU_2875 "ribosomal protein S9" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 161 (61.7 bits), Expect = 7.1e-12, P = 7.1e-12
 Identities = 28/69 (40%), Positives = 44/69 (63%)

Query:   233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
             YGTG+RK S+ARVW++PG G  ++N+K  D YF     +  + +P    + +G +D+   
Sbjct:     7 YGTGKRKSSVARVWLKPGTGAIVINNKPIDEYFGRETSKMIVKQPLELVEKVGAFDIYVN 66

Query:   293 VKGGGVSGE 301
             V+GGG SG+
Sbjct:    67 VRGGGDSGQ 75

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|NSE_0839 NSE_0839 "ribosomal protein S9" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 159 (61.0 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 37/83 (44%), Positives = 48/83 (57%)

Query:   222 RVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAA---LLRPF 278
             RV  VD +GRAYGTGRRK S+ARVW++ G G F +N       +  L H+     +  P 
Sbjct:    10 RVPVVDRQGRAYGTGRRKTSVARVWVKAGTGSFRINGGSNLASY--LRHQYLCQDVCLPL 67

Query:   279 SETKTLGLWDVDCTVKGGGVSGE 301
                   G +DV  TVKGGG+SG+
Sbjct:    68 RVCDVAGKFDVFATVKGGGISGQ 90

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

UNIPROTKB|P0A7X3 rpsI "30S ribosomal subunit protein S9" [Escherichia coli K-12 (taxid:83333)]

 Score = 154 (59.3 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query:   233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
             YGTGRRK S ARV+I+PG+GK ++N +  + YF     R  + +P      +   D+  T
Sbjct:     7 YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYIT 66

Query:   293 VKGGGVSGE 301
             VKGGG+SG+
Sbjct:    67 VKGGGISGQ 75

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

TIGR_CMR|APH_1107 APH_1107 "ribosomal protein S9" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 147 (56.8 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 30/77 (38%), Positives = 43/77 (55%)

Query:   225 QVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTL 284
             ++D  GR+YGTG RK ++A+VW++ G G   VN  E   YF        +  PF    ++
Sbjct:    18 RIDSLGRSYGTGSRKNAVAKVWLKVGSGVVTVNGMECAAYFGREALCKRVFNPFHVASSV 77

Query:   285 GLWDVDCTVKGGGVSGE 301
             G +DV   V GGG SG+
Sbjct:    78 GCYDVRAVVFGGGKSGQ 94

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

RGD|1306558 Mrps9 "mitochondrial ribosomal protein S9" [Rattus norvegicus (taxid:10116)]

 Score = 159 (61.0 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 45/116 (38%), Positives = 61/116 (52%)

Query:   189 PLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGT--GRRKCSIARVW 246
             P    EE  + +  R+S   + ++Q  E V      Q DE+G A+ T  GRRK + ARV 
Sbjct:   174 PCGPAEE-DFVQRFRRSVTVQSKKQLIEPV------QYDEQGMAFSTSEGRRKSATARVV 226

Query:   247 I-QPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGE 301
             + Q G GK  VN  ++ +YFP+L  R  L+ PF     L   DV CTV GGG S +
Sbjct:   227 VYQHGSGKIHVNGVDYLLYFPILQDREQLMFPFHFLDRLEKHDVTCTVSGGGRSAQ 282

GO:0005739 "mitochondrion" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037349001	SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (186 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015322001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)	•			•	•		•		0.981
	GSVIVG00033342001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (203 aa)	•			•	•		•		0.967
	rps2	ribosomal protein S2 (180 aa)	•			•	•		•		0.965
	GSVIVG00027910001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (235 aa)	•			•			•		0.963
	GSVIVG00020550001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (207 aa)	•			•			•		0.955
	rps3	SubName- Full=Chromosome undetermined scaffold_3592, whole genome shotgun sequence; (207 aa)	•			•	•		•		0.950
	GSVIVG00003076001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (340 aa)	•			•	•		•		0.946
	rps8	RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)	•			•	•		•		0.939
	GSVIVG00008391001	SubName- Full=Chromosome undetermined scaffold_1415, whole genome shotgun sequence; (151 aa)	•			•	•		•		0.925
	GSVIVG00016542001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (136 aa)	•			•	•		•		0.923

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
PRK00132	130	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	5e-28
pfam00380	121	pfam00380, Ribosomal_S9, Ribosomal protein S9/S16	7e-28
COG0103	130	COG0103, RpsI, Ribosomal protein S9 [Translation,	6e-23
CHL00079	130	CHL00079, rps9, ribosomal protein S9	1e-15
PRK00474	134	PRK00474, rps9p, 30S ribosomal protein S9P; Review	1e-06
TIGR03627	130	TIGR03627, arch_S9P, archaeal ribosomal protein S9	5e-06

>gnl|CDD|178888 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed

 Score =  104 bits (263), Expect = 5e-28
 Identities = 34/68 (50%), Positives = 46/68 (67%)

Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK ++ARV ++PG GK  VN ++ + YFP    R  + +P   T+T G +DV  T
Sbjct: 7   YGTGRRKTAVARVRLKPGSGKITVNGRDLEEYFPRETLRMVVRQPLELTETEGKFDVYVT 66

Query: 293 VKGGGVSG 300
           VKGGG+SG
Sbjct: 67  VKGGGISG 74

Length = 130

>gnl|CDD|201193 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16

 Score =  104 bits (261), Expect = 7e-28
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query: 236 GRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKG 295
           GRRK ++ARVW++PG GK  +N K  + YFP    R  +L P   T TLG +D+  TVKG
Sbjct: 1   GRRKTAVARVWLKPGSGKITINGKPLEEYFPNETLRMKILEPLELTGTLGKFDIVVTVKG 60

Query: 296 GGVSG 300
           GG+SG
Sbjct: 61  GGISG 65

This family includes small ribosomal subunit S9 from prokaryotes and S16 from eukaryotes. Length = 121

>gnl|CDD|223181 COG0103, RpsI, Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]

 Score = 91.4 bits (228), Expect = 6e-23
 Identities = 32/72 (44%), Positives = 48/72 (66%)

Query: 229 KGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWD 288
           + + Y TG+RK ++ARV + PG GK  VN +  ++YFP    R  +++P   T T+G +D
Sbjct: 3   EDQVYTTGKRKSAVARVRLVPGKGKITVNGRPLELYFPRETLRMKIMQPLLLTGTVGKFD 62

Query: 289 VDCTVKGGGVSG 300
           +D TVKGGG+SG
Sbjct: 63  IDVTVKGGGISG 74

Length = 130

>gnl|CDD|214357 CHL00079, rps9, ribosomal protein S9

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 232 AYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLR----PFSETKTLGLW 287
             GTGRRK ++A+V + PG G+ I+N K  + Y     +    L     P         +
Sbjct: 5   YIGTGRRKTAVAQVRLVPGSGEIIINGKPAEEYLQ---YNPNYLNAIKAPLKLLGLENKY 61

Query: 288 DVDCTVKGGGVSG 300
           D+   VKGGG++G
Sbjct: 62  DIIVKVKGGGLTG 74

Length = 130

>gnl|CDD|179041 PRK00474, rps9p, 30S ribosomal protein S9P; Reviewed

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 235 TGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPF--SETKTLGLWDVDCT 292
           +G+RK +IAR  I+ G G+  +N    ++  P L  R  ++ P   +        D+D  
Sbjct: 8   SGKRKTAIARATIREGKGRVRINGVPLELIEPEL-ARLKIMEPLILAGEDLRSKVDIDVN 66

Query: 293 VKGGGVSGE 301
           V+GGG+ G+
Sbjct: 67  VEGGGIMGQ 75

Length = 134

>gnl|CDD|132666 TIGR03627, arch_S9P, archaeal ribosomal protein S9P

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 235 TGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPF--SETKTLGLWDVDCT 292
           +G+RK +IAR  I+ G G+  +N    ++Y P L  R  ++ P   +      + D+D  
Sbjct: 5   SGKRKTAIARATIREGKGRVRINGVPVELYPPEL-ARLKIMEPLILAGDIAKEV-DIDVK 62

Query: 293 VKGGGVSGE 301
           V GGG+ G+
Sbjct: 63  VSGGGIMGQ 71

This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
KOG1697	275	consensus Mitochondrial/chloroplast ribosomal prot	99.94
COG0103	130	RpsI Ribosomal protein S9 [Translation, ribosomal	99.92
PRK00132	130	rpsI 30S ribosomal protein S9; Reviewed	99.92
CHL00079	130	rps9 ribosomal protein S9	99.91
PTZ00086	147	40S ribosomal protein S16; Provisional	99.9
TIGR03627	130	arch_S9P archaeal ribosomal protein S9P. This mode	99.9
PRK00474	134	rps9p 30S ribosomal protein S9P; Reviewed	99.9
PF00380	121	Ribosomal_S9: Ribosomal protein S9/S16; InterPro:	99.89
PLN00210	141	40S ribosomal protein S16; Provisional	99.89
KOG1753	145	consensus 40S ribosomal protein S16 [Translation,	99.43

>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=3.1e-27  Score=219.14  Aligned_cols=103  Identities=45%  Similarity=0.751  Sum_probs=95.0

Q ss_pred             cccccCCCCCCHHHHHHHhhhhcccchHHHHHHHHHHhhhhhccccccCC----cccccCcccceEEEEEEEccceEEEE
Q 021913          181 LEGVEGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKG----RAYGTGRRKCSIARVWIQPGDGKFIV  256 (305)
Q Consensus       181 LerL~~lpPls~~eee~i~kyrrks~r~~iqs~kq~ei~k~~~~qlDe~G----rayatGRRKTAiArV~L~pGsGkItV  256 (305)
                      ++.+... ||+..++.|+++|+|+                     +|+.|    +++++||||||+|+|+|.||+|+|.|
T Consensus       118 ~~~l~s~-p~~~~e~~f~~~~~k~---------------------~~~~g~~~~~~~~~g~rK~a~A~V~v~~GtGk~~v  175 (275)
T KOG1697|consen  118 IEHLLSS-PYSAIEEKFLKRFRKP---------------------LDESGKPEVRIIAVGRRKCARATVKVQPGTGKFDV  175 (275)
T ss_pred             HHHHhhC-chhHHHHHHHHHHHhc---------------------ccccCCCceeeeeccceecceeEEEEecCceeEEe
Confidence            4556664 9999999999999864                     45556    89999999999999999999999999


Q ss_pred             cCcchhhhCCchHHHHHHhhhHHHhcccCccceEEEeeecCcccccccC
Q 021913          257 NDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       257 NGkpl~~YFp~~~~Re~Il~PL~vt~~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      ||++++.||+.+++|+++++||.+++.+|+|||+|||+|||+||||+||
T Consensus       176 Ng~~~~~yF~~~~~Re~ll~Pl~~~~~lg~~dv~atv~GGG~sgqagAI  224 (275)
T KOG1697|consen  176 NGRDLDVYFQHLQHREQLLYPLAVSESLGKYDVTATVSGGGPSGQAGAI  224 (275)
T ss_pred             cchhHHhHhccchhHHHHhhhHHHhccccceeEEEEecCCCccchhHHH
Confidence            9999999999999999999999999999999999999999999999997

>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.2e-25  Score=191.04  Aligned_cols=75  Identities=43%  Similarity=0.813  Sum_probs=73.3

Q ss_pred             cccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcccCccceEEEeeecCcccccccC
Q 021913          231 RAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       231 rayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      .+|++||||+|+|+|+|.||+|+|+|||+|+++||+....|.+|++||.+++..++|||.|+|+|||.||||+||
T Consensus         5 ~~~~tGkRK~AvArv~l~~g~G~i~vNg~~~e~yf~~e~~r~~i~~Pl~l~~~~~~~Di~v~V~GGG~~GQA~Ai   79 (130)
T COG0103           5 QVYTTGKRKSAVARVRLVPGKGKITVNGRPLELYFPRETLRMKIMQPLLLTGTVGKFDIDVTVKGGGISGQAGAI   79 (130)
T ss_pred             eeeeeccccceEEEEEEEcCCcEEEECCcCHHHhcchHHHHHHHhhhHHHhCccccccEEEEEecCCchHHHHHH
Confidence            688999999999999999999999999999999999889999999999999999999999999999999999996

>PRK00132 rpsI 30S ribosomal protein S9; Reviewed

Probab=99.92  E-value=1.6e-25  Score=189.68  Aligned_cols=75  Identities=45%  Similarity=0.798  Sum_probs=72.6

Q ss_pred             cccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcccCccceEEEeeecCcccccccC
Q 021913          231 RAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       231 rayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      ..|++||||||+|+|||.||+|+|+|||+|+++||+...+|++|++||.+++..++|||+|+|+|||+||||+||
T Consensus         5 ~~~~~GrRK~a~A~v~l~~G~G~i~INg~~~~~yf~~~~~r~~i~~Pl~~~~~~~~~Di~i~V~GGG~sgQa~Ai   79 (130)
T PRK00132          5 QYYGTGRRKTAVARVRLKPGSGKITVNGRDLEEYFPRETLRMVVRQPLELTETEGKFDVYVTVKGGGISGQAGAI   79 (130)
T ss_pred             eEEEEeeCCCeEEEEEEEcCccEEEECCEeHHHHcCCHHHHHHHHHHHHHhCccCceeEEEEEEcCCHHHHHHHH
Confidence            457999999999999999999999999999999999889999999999999999999999999999999999997

>CHL00079 rps9 ribosomal protein S9

Probab=99.91  E-value=3.1e-25  Score=188.01  Aligned_cols=76  Identities=32%  Similarity=0.517  Sum_probs=71.5

Q ss_pred             CcccccCcccceEEEEEEEccceEEEEcCcchhhhCCc-hHHHHHHhhhHHHhcccCccceEEEeeecCcccccccC
Q 021913          230 GRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPM-LDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       230 GrayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~-~~~Re~Il~PL~vt~~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      .+++++||||||+|+|||.||+|+|+|||+++++||+. ...+++|++||.++++.++|||.|+|+|||.||||+||
T Consensus         3 ~~~~~~GrRKta~Arv~l~~G~G~i~INg~~~~~yf~~~~~~~~~v~~Pl~~~~~~~~~Di~i~V~GGG~sgQa~Ai   79 (130)
T CHL00079          3 ILYIGTGRRKTAVAQVRLVPGSGEIIINGKPAEEYLQYNPNYLNAIKAPLKLLGLENKYDIIVKVKGGGLTGQAEAI   79 (130)
T ss_pred             eEEEEEeeCCCeEEEEEEEcCCcEEEECCCcHHHHCCcCHHHHHHHHHHHHHhCcCCceeEEEEEEcCChhHHHHHH
Confidence            35689999999999999999999999999999999996 45689999999999999999999999999999999997

>PTZ00086 40S ribosomal protein S16; Provisional

Probab=99.90  E-value=1.9e-24  Score=186.43  Aligned_cols=74  Identities=23%  Similarity=0.390  Sum_probs=70.9

Q ss_pred             cccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcc--cCccceEEEeeecCcccccccC
Q 021913          231 RAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKT--LGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       231 rayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~--lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      .++++||||||+|+|+|.+|+|+|+|||+|+++||+ ..+|++|++||.+++.  +++|||+|+|+|||.||||+||
T Consensus        10 ~v~~~GrRKtAiArv~l~~G~G~i~INg~~l~~y~~-~~~r~~i~~Pl~~~~~~~~~~~Di~i~V~GGG~sgQA~Ai   85 (147)
T PTZ00086         10 QVQTFGKKKTAVAVALVTKGKGLIRVNGVPLDLINP-ETLRAKVFEPLLLVGKERFSRLDIRVRVRGGGQVAQAYAI   85 (147)
T ss_pred             ceEEeeecCCceEEEEEEcCCceEEECCcCHHHhCc-HHHHHHHHHHHHHhCcCccCceeEEEEEEcCCHHHHHHHH
Confidence            588999999999999999999999999999999998 6789999999999976  8999999999999999999997

>TIGR03627 arch_S9P archaeal ribosomal protein S9P

Probab=99.90  E-value=3e-24  Score=181.87  Aligned_cols=73  Identities=27%  Similarity=0.438  Sum_probs=69.2

Q ss_pred             ccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhc-ccCccceEEEeeecCcccccccC
Q 021913          232 AYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETK-TLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       232 ayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~-~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      ++++||||||+|+|+|.||+|+|+|||++++.|| ...+|++|++||.+++ ..++|||+|+|+|||+||||+||
T Consensus         2 ~~~~GrRKta~A~v~l~~G~G~i~VNg~~~~~y~-~~~~r~~i~~Pl~~~~~~~~~~Dv~i~V~GGG~sgQa~Ai   75 (130)
T TIGR03627         2 VITSGKRKTAIARATIREGKGRVRINGVPVELYP-PELARLKIMEPLILAGDIAKEVDIDVKVSGGGIMGQADAA   75 (130)
T ss_pred             eEEEeeCCCeEEEEEEEcCceEEEECCEeHHHhC-CHHHHHHHHHHHHHHhccccCccEEEEEEcCChhHHHHHH
Confidence            5789999999999999999999999999999887 5788999999999997 89999999999999999999997

This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.

>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed

Probab=99.90  E-value=3.5e-24  Score=182.24  Aligned_cols=73  Identities=26%  Similarity=0.417  Sum_probs=69.4

Q ss_pred             ccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhc--ccCccceEEEeeecCcccccccC
Q 021913          232 AYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETK--TLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       232 ayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~--~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      ++++||||||+|+|+|.||+|+|+|||+|++.|| ...+|++|++||.+++  +.++|||+|+|+|||+||||+||
T Consensus         5 ~~~~GrRKta~A~v~l~~G~G~i~VNg~~~~~y~-~~~~r~~i~~Pl~~~~~~~~~~~di~i~V~GGG~sgQa~Ai   79 (134)
T PRK00474          5 VITSGKRKTAIARATIREGKGRVRINGVPLELIE-PELARLKIMEPLILAGEDLRSKVDIDVNVEGGGIMGQADAA   79 (134)
T ss_pred             EEEEeeCCCeEEEEEEEcCceEEEECCEeHHHHC-CHHHHHHHHHHHHHhCccccCCccEEEEEEcCChhHHHHHH
Confidence            5789999999999999999999999999999887 4788999999999999  89999999999999999999997

>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.89  E-value=1.2e-24  Score=182.07  Aligned_cols=70  Identities=46%  Similarity=0.846  Sum_probs=68.6

Q ss_pred             CcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcccCccceEEEeeecCcccccccC
Q 021913          236 GRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       236 GRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      ||||||+|+|||.+|+|+|+|||+|+.+||+...+|++|++||.+++..++|||+|+|+|||.||||+||
T Consensus         1 GkRK~a~A~v~l~~G~G~i~INg~~l~~yf~~~~~r~~il~Pl~~~~~~~~~di~~~V~GGG~~gQa~Ai   70 (121)
T PF00380_consen    1 GKRKTAIARVWLKPGSGKIRINGKPLEEYFPNPYLREKILEPLELTGTLGKFDIFANVKGGGISGQAGAI   70 (121)
T ss_dssp             EEETTEEEEEEEEESSSEEEETTSEHHHHSSSTTTGCCTTHHHHCTTTSTSEEEEEEEESSSHHHHHHHH
T ss_pred             CCCceEEEEEEEEeCceEEEECCEEHHHhcCcHhHHHHHHHHHHHhCcCCeeeEEEEEecCcEeeehHHH
Confidence            8999999999999999999999999999999889999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....

>PLN00210 40S ribosomal protein S16; Provisional

Probab=99.89  E-value=8.7e-24  Score=181.24  Aligned_cols=73  Identities=22%  Similarity=0.314  Sum_probs=69.1

Q ss_pred             ccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcc--cCccceEEEeeecCcccccccC
Q 021913          232 AYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKT--LGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       232 ayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~--lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      +.++||||||+|+|+|+||+|+|+|||+|++.||+ ..+|++|++||.+++.  +++|||+|+|+|||.||||+||
T Consensus         5 ~~~~GrRKta~Arv~~~~G~G~i~INg~~~~~y~~-~~~r~~i~~Pl~~~~~~~~~~~Di~~~V~GGG~sgQa~Ai   79 (141)
T PLN00210          5 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQP-EILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAI   79 (141)
T ss_pred             eeeeccCCCceEEEEEECCCceEEECCCcHHHHCC-HHHHHHHHHHHHHhCccccCceeEEEEEEcCCHhHHHHHH
Confidence            56899999999999999999999999999999988 7789999999999985  6999999999999999999997

>KOG1753 consensus 40S ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.1e-13  Score=119.07  Aligned_cols=74  Identities=26%  Similarity=0.324  Sum_probs=67.4

Q ss_pred             cccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcc--cCccceEEEeeecCcccccccC
Q 021913          231 RAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKT--LGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       231 rayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~--lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      .+...||+|||+|.+.|+.|+|.|.|||+|++.+-+ ..+|.++++|+.+++.  ...+||.|+|+|||.++|.+||
T Consensus         8 Svq~fG~KK~AtAva~ck~G~glikvNg~ple~ie~-~~L~~Kl~Epvlllgk~rfa~vdi~v~~~ggghvsqiyai   83 (145)
T KOG1753|consen    8 SVQVFGRKKTATAVAHCKHGSGLIKVNGRPLELIEP-EILRYKLLEPVLLLGKERFAGVDIRVRVKGGGHVSQIYAI   83 (145)
T ss_pred             ceeeeccccceEEEEEeecCceEEEECCcchHhccH-HHHHHHHhhhHhhhhhhhhCCCceEEEEecCchHHHHHHH
Confidence            355789999999999999999999999999997766 6789999999999976  6789999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
1fjg_I	128	Structure Of The Thermus Thermophilus 30s Ribosomal		6e-13
1pns_I	127	Crystal Structure Of A Streptomycin Dependent Ribos		6e-13
2hgi_L	128	Crystal Structure Of The 70s Thermus Thermophilus R		7e-13
1p6g_I	129	Real Space Refined Coordinates Of The 30s Subunit F		9e-12
1vs5_I	130	Crystal Structure Of The Bacterial Ribosome From Es		9e-12
3fih_I	127	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		1e-11
2gy9_I	126	Structure Of The 30s Subunit Of A Pre-Translocation		1e-11
3bbn_I	197	Homology Model For The Spinach Chloroplast 30s Subu		2e-06

>pdb|1FJG|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 128

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%)
Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK ++ARV+++PG+GK  VN ++F+ YF  L    A L P      LG +D   T
Sbjct: 5   YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYIT 64
Query: 293 VKGGGVSGEL 302
           V+GGG SG++
Sbjct: 65  VRGGGKSGQI 74

>pdb|1PNS|I Chain I, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 127

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%)
Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK ++ARV+++PG+GK  VN ++F+ YF  L    A L P      LG +D   T
Sbjct: 4   YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYIT 63
Query: 293 VKGGGVSGEL 302
           V+GGG SG++
Sbjct: 64  VRGGGKSGQI 73

>pdb|2HGI|L Chain L, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 2hgj. Length = 128

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%)
Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK ++ARV+++PG+GK  VN ++F+ YF  L    A L P      LG +D   T
Sbjct: 5   YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGHFDAYIT 64
Query: 293 VKGGGVSGEL 302
           V+GGG SG++
Sbjct: 65  VRGGGKSGQI 74

>pdb|1P6G|I Chain I, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 129

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK S ARV+I+PG+GK ++N +  + YF     R  + +P      +   D+  T
Sbjct: 6   YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYIT 65
Query: 293 VKGGGVSGE 301
           VKGGG+SG+
Sbjct: 66  VKGGGISGQ 74

>pdb|1VS5|I Chain I, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 130

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK S ARV+I+PG+GK ++N +  + YF     R  + +P      +   D+  T
Sbjct: 7   YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYIT 66
Query: 293 VKGGGVSGE 301
           VKGGG+SG+
Sbjct: 67  VKGGGISGQ 75

>pdb|3FIH|I Chain I, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 127

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK S ARV+I+PG+GK ++N +  + YF     R  + +P      +   D+  T
Sbjct: 4   YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYIT 63
Query: 293 VKGGGVSGE 301
           VKGGG+SG+
Sbjct: 64  VKGGGISGQ 72

>pdb|2GY9|I Chain I, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 126

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK S ARV+I+PG+GK ++N +  + YF     R  + +P      +   D+  T
Sbjct: 3   YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYIT 62
Query: 293 VKGGGVSGE 301
           VKGGG+SG+
Sbjct: 63  VKGGGISGQ 71

>pdb|3BBN|I Chain I, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 197

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 234 GTGRRKCSIARVWIQPGDGKFIVNDKEFDVYF---PMLDHRAALLRPFSETKTLGL---W 287
           GTGRRKC+IARV +Q G GKFI+N ++   Y    P+           +   TLG    +
Sbjct: 74  GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVK-----TPLATLGYETNY 128
Query: 288 DVDCTVKGGGVSGELRCF 305
           DV     GGG+SG+ +  
Sbjct: 129 DVFVKAHGGGLSGQAQAI 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
3bbn_I	197	Ribosomal protein S9; small ribosomal subunit, spi	2e-38
3r8n_I	127	30S ribosomal protein S9; protein biosynthesis, RN	3e-32
2vqe_I	128	30S ribosomal protein S9, 30S ribosomal protein S6	3e-31
2zkq_i	146	40S ribosomal protein S16E; protein-RNA complex, 4	4e-25
3iz6_I	149	40S ribosomal protein S16 (S9P); eukaryotic riboso	1e-24
2xzm_I	145	RPS16E; ribosome, translation; 3.93A {Tetrahymena	4e-23
3u5c_Q	143	RP61R, 40S ribosomal protein S16-A; translation, r	4e-22

>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 197

 Score =  133 bits (337), Expect = 2e-38
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 1/117 (0%)

Query: 185 EGLPPLSEIEEMRYEKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIAR 244
             L   + ++ +     +  +     E    E+  K+R+          GTGRRKC+IAR
Sbjct: 25  FSLSNPAVVKPLVITATSATAPVEVAETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIAR 84

Query: 245 VWIQPGDGKFIVNDKEFDVYFPMLD-HRAALLRPFSETKTLGLWDVDCTVKGGGVSG 300
           V +Q G GKFI+N ++   Y          +  P +       +DV     GGG+SG
Sbjct: 85  VVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSG 141

>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ... Length = 128

 Score =  112 bits (284), Expect = 3e-31
 Identities = 33/68 (48%), Positives = 44/68 (64%)

Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK ++ARV+++PG+GK  VN ++F+ YF  L    A L P      LG +D   T
Sbjct: 5   YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYIT 64

Query: 293 VKGGGVSG 300
           V+GGG SG
Sbjct: 65  VRGGGKSG 72

>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 146

 Score = 96.9 bits (242), Expect = 4e-25
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 227 DEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKT--L 284
                    GR+K + A    + G+G   VN +  ++  P    +  LL P         
Sbjct: 5   GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEP-RTLQYKLLEPVLLLGKERF 63

Query: 285 GLWDVDCTVKGGGVSG 300
              D+   VKGGG   
Sbjct: 64  AGVDIRVRVKGGGHVA 79

>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 149

 Score = 96.2 bits (240), Expect = 1e-24
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 221 ARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSE 280
           A        G     GR+K ++A  + +PG G   VN    ++  P +  R     P   
Sbjct: 2   AAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEM-LRLKAFEPILL 60

Query: 281 TKT--LGLWDVDCTVKGGGVSG 300
                    D+   V+GGG + 
Sbjct: 61  AGRSRFKDIDMRIRVRGGGKTS 82

>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I Length = 145

 Score = 91.9 bits (229), Expect = 4e-23
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFS--ETKTLGLWDVD 290
              GR+K ++A   ++PG G   VN    D+  P +  +A +  P      +     D+ 
Sbjct: 10  QTFGRKKNAVAVASVRPGKGLLKVNGSPIDMINPQI-LQAKIYEPILLLGQQKFANLDIR 68

Query: 291 CTVKGGGVSG 300
             V+G G + 
Sbjct: 69  IRVRGSGYTS 78

>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I* Length = 143

 Score = 88.8 bits (221), Expect = 4e-22
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPF--SETKTLGLWDVD 290
              G++K + A   ++ G G   VN     +  P +  R  +  P            D+ 
Sbjct: 8   QTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEI-LRFKVYEPLLLVGLDKFSNIDIR 66

Query: 291 CTVKGGGVSG 300
             V GGG   
Sbjct: 67  VRVTGGGHVS 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
2vqe_I	128	30S ribosomal protein S9, 30S ribosomal protein S6	99.92
3r8n_I	127	30S ribosomal protein S9; protein biosynthesis, RN	99.92
2xzm_I	145	RPS16E; ribosome, translation; 3.93A {Tetrahymena	99.91
2zkq_i	146	40S ribosomal protein S16E; protein-RNA complex, 4	99.9
3j20_K	135	30S ribosomal protein S9P; archaea, archaeal, KINK	99.9
3bbn_I	197	Ribosomal protein S9; small ribosomal subunit, spi	99.9
3u5c_Q	143	RP61R, 40S ribosomal protein S16-A; translation, r	99.9
3iz6_I	149	40S ribosomal protein S16 (S9P); eukaryotic riboso	99.85

>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...

Probab=99.92  E-value=1.7e-26  Score=194.21  Aligned_cols=74  Identities=45%  Similarity=0.813  Sum_probs=72.1

Q ss_pred             ccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcccCccceEEEeeecCcccccccC
Q 021913          232 AYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       232 ayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      +|++||||||+|+|+|.||+|+|+|||+|+++||+...+|++|++||.++++.++|||.|+|+|||.||||+||
T Consensus         4 ~~~~GrRKtavArv~l~~G~G~i~VNg~~l~~yf~~~~~r~~v~~Pl~~~~~~~~~Di~v~V~GGG~sgQA~Ai   77 (128)
T 2vqe_I            4 YYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAI   77 (128)
T ss_dssp             EEECCEETTEEEEEEEEESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHH
T ss_pred             cEEeCcCCCEEEEEEEEcCceEEEECCCcHHHHcCCHHHHHHHHhHHHHHcccCceeEEEEEEcCCeehHHHHH
Confidence            58999999999999999999999999999999999888999999999999999999999999999999999996

>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I

Probab=99.91  E-value=2e-25  Score=191.13  Aligned_cols=75  Identities=21%  Similarity=0.321  Sum_probs=72.3

Q ss_pred             CcccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhc--ccCccceEEEeeecCcccccccC
Q 021913          230 GRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETK--TLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       230 GrayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~--~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      .+++++||||||+|+|+|.||+|+|+|||+|++ ||+...+|++|++||.+++  +.++|||.|+|+|||.||||+||
T Consensus         7 ~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~l~-yf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~Ai   83 (145)
T 2xzm_I            7 QLVQTFGRKKNAVAVASVRPGKGLLKVNGSPID-MINPQILQAKIYEPILLLGQQKFANLDIRIRVRGSGYTSQVYAI   83 (145)
T ss_dssp             SCEEEEEEETTEEEEEEEEESSCEEEESSSBGG-GCSSTTTHHHHHHHHHHHCHHHHHHEEEEEEECCSSHHHHHHHH
T ss_pred             cEEEEEeECCCEEEEEEEEeCceEEEECCEeHH-HcCcHHHHHHHHHHHHHhChhhhCceeEEEEEEcCCeecHHHHH
Confidence            578999999999999999999999999999999 9998899999999999999  79999999999999999999996

>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.90  E-value=1.5e-25  Score=192.11  Aligned_cols=78  Identities=22%  Similarity=0.258  Sum_probs=71.8

Q ss_pred             ccCCcccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcc--cCccceEEEeeecCccccccc
Q 021913          227 DEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKT--LGLWDVDCTVKGGGVSGELRC  304 (305)
Q Consensus       227 De~GrayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~--lgkyDI~itVkGGGlSGQAgA  304 (305)
                      +..++++++||||||+|+|+|.||+|+|+|||+|+ +||+...+|++|++||.+++.  .++|||.|+|+|||.||||+|
T Consensus         5 ~~~~~~~~~GrRKtAvArv~l~~G~G~i~VNg~~l-eyf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~A   83 (146)
T 2zkq_i            5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPL-EMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYA   83 (146)
T ss_dssp             ---CCEEECCBCSSCEEEEEEEESSSCEEETTEEH-HHHSTTSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHHHHH
T ss_pred             CCCceEEEEeeCCCeEEEEEEEcCCeeEEEcCcCH-HHcCcHHHHHHHHHHHHHhCccccCceEEEEEEEcCCeehHHHH
Confidence            44678999999999999999999999999999999 699988889999999999994  699999999999999999999


Q ss_pred             C
Q 021913          305 F  305 (305)
Q Consensus       305 I  305 (305)
                      |
T Consensus        84 i   84 (146)
T 2zkq_i           84 I   84 (146)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.90  E-value=2.7e-25  Score=188.34  Aligned_cols=74  Identities=31%  Similarity=0.468  Sum_probs=70.2

Q ss_pred             cccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhc--ccCccceEEEeeecCcccccccC
Q 021913          231 RAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETK--TLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       231 rayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~--~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      .++++||||||+|+|+|.||+|+|+|||+|++.||+ ..+|++|++||.+++  ..++|||.|+|+|||.||||+||
T Consensus         3 ~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~-~~~r~~i~~Pl~l~~~~~~~~~Di~v~V~GGG~~gQA~Ai   78 (135)
T 3j20_K            3 IIQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEP-EIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAA   78 (135)
T ss_dssp             CEEEEEEETTEEEEEEEEESSCCEEETTEEGGGCSC-SHHHHHHSHHHHHHCHHHHHHEEEEEEEECSCHHHHHHHH
T ss_pred             EEEEeCcCccEEEEEEEEeCceEEEECCeeHHHHCh-HHHHHHhhCChhhcchhhcccccEEEEEECCCEechHhHH
Confidence            367999999999999999999999999999998887 689999999999998  89999999999999999999996

>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.90  E-value=2.5e-25  Score=198.52  Aligned_cols=80  Identities=34%  Similarity=0.484  Sum_probs=70.6

Q ss_pred             cccCCcccccCcccceEEEEEEEccceEEEEcCcchhhhCCch-HHHHHHhhhHHHhcccCccceEEEeeecCccccccc
Q 021913          226 VDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPML-DHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRC  304 (305)
Q Consensus       226 lDe~GrayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~-~~Re~Il~PL~vt~~lgkyDI~itVkGGGlSGQAgA  304 (305)
                      ....+.+|++||||||+|+|||+||+|+|+|||+|+++||+.. ..+++|++||.++++.++|||.|+|+|||.||||+|
T Consensus        66 ~~~~~~~~~tGRRKtAvArV~l~~G~G~I~VNg~~l~~YF~~~~~~~~~v~~PL~l~~~~~k~DI~v~V~GGG~sGQA~A  145 (197)
T 3bbn_I           66 GFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQA  145 (197)
T ss_dssp             -----CBCCCCEETTEEEEEEEEESSCCEEETTEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEEEEEESSCHHHHHHH
T ss_pred             ccCccEEEEEeeCCceEEEEEEEcCceeEEECCCcHHHHcCccHHHHHHHHHHHHHhCccCceeEEEEEecCCeehHHHH
Confidence            3456778999999999999999999999999999999999754 445799999999999999999999999999999999


Q ss_pred             C
Q 021913          305 F  305 (305)
Q Consensus       305 I  305 (305)
                      |
T Consensus       146 I  146 (197)
T 3bbn_I          146 I  146 (197)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*

Probab=99.90  E-value=8.7e-25  Score=186.72  Aligned_cols=74  Identities=20%  Similarity=0.297  Sum_probs=69.8

Q ss_pred             cccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcc--cCccceEEEeeecCcccccccC
Q 021913          231 RAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKT--LGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       231 rayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~--lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      .++++||||||+|+|+|.||+|+|+|||+|++.||+. .+|++|++||.+++.  +++|||.|+|+|||.||||+||
T Consensus         6 ~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~-~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~Ai   81 (143)
T 3u5c_Q            6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPE-ILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAI   81 (143)
T ss_dssp             EEEEEECSTTCEEEEEEEECSCCEEETTEETTTCSSC-STHHHHHHHHHHTCSTTSTTEEEEEEEESSCHHHHHHHH
T ss_pred             eEEEeccCcceEEEEEEEeCceEEEECCCcHHHHChH-HHHHHHHHHHHHHhhhccCceeEEEEEECCCEecHHhHH
Confidence            4678999999999999999999999999999999994 689999999999976  6999999999999999999996

>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.85  E-value=1e-24  Score=187.46  Aligned_cols=74  Identities=23%  Similarity=0.366  Sum_probs=58.9

Q ss_pred             cccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcc--cCccceEEEeeecCcccccccC
Q 021913          231 RAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKT--LGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       231 rayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~--lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      .++++||||||+|+|+|.||+|+|+|||+|+++||+. .+|++|++||.+++.  .++|||.|+|+|||.||||+||
T Consensus        12 ~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~-~~r~~v~~Pl~l~~~~~~~~~DI~v~V~GGG~sgQA~Ai   87 (149)
T 3iz6_I           12 TVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPE-MLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAI   87 (149)
T ss_dssp             ------------CCCCCCCCCCSSSEECCCCCCSSCC-EEESSSBHHHHTCSCHHHHHHHTTTTTTSCSTTCCEEEC
T ss_pred             EEEEeccCcceEEEEEEEeCcEEEEECCCcHHHHChH-HHHHHHHHHHHHHhHhccCceeEEEEEeCCCeecHHHHH
Confidence            4778999999999999999999999999999999994 678999999999985  5999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d2gy9i1	126	d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherich	8e-20
d2vqei1	127	d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus t	2e-19

>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Escherichia coli [TaxId: 562]

 Score = 81.4 bits (201), Expect = 8e-20
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK S ARV+I+PG+GK ++N +  + YF     R  + +P      +   D+  T
Sbjct: 3   YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYIT 62

Query: 293 VKGGGVSGELRC 304
           VKGGG+SG+   
Sbjct: 63  VKGGGISGQAGA 74

>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Thermus thermophilus [TaxId: 274]

 Score = 80.4 bits (198), Expect = 2e-19
 Identities = 33/72 (45%), Positives = 46/72 (63%)

Query: 233 YGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCT 292
           YGTGRRK ++ARV+++PG+GK  VN ++F+ YF  L    A L P      LG +D   T
Sbjct: 4   YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYIT 63

Query: 293 VKGGGVSGELRC 304
           V+GGG SG++  
Sbjct: 64  VRGGGKSGQIDA 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d2vqei1	127	Ribosomal protein S9 {Thermus thermophilus [TaxId:	99.92
d2gy9i1	126	Ribosomal protein S9 {Escherichia coli [TaxId: 562	99.92

>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=9.6e-27  Score=192.64  Aligned_cols=75  Identities=44%  Similarity=0.809  Sum_probs=72.6

Q ss_pred             cccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcccCccceEEEeeecCcccccccC
Q 021913          231 RAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       231 rayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      .+|++||||||+|+|||.||+|+|+|||+|+++||+....+..+++||.++++.++|||.|+|+|||+||||+||
T Consensus         2 ~~y~~GrRKtaiArv~l~~G~G~I~IN~~~~~~yf~~~~~~~~~~~Pl~~~~~~~~~Di~~~V~GGG~~gQa~Ai   76 (127)
T d2vqei1           2 QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAI   76 (127)
T ss_dssp             CEEECCEETTEEEEEEEEESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHH
T ss_pred             ccEeecccccEEEEEEEEcCCceEEEechhHhhhccHHHHHHHHHhhhhhhccccceeEEEEEecCChhHHHHHH
Confidence            478999999999999999999999999999999999888899999999999999999999999999999999996

>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1e-26  Score=192.29  Aligned_cols=74  Identities=41%  Similarity=0.729  Sum_probs=72.3

Q ss_pred             ccccCcccceEEEEEEEccceEEEEcCcchhhhCCchHHHHHHhhhHHHhcccCccceEEEeeecCcccccccC
Q 021913          232 AYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGELRCF  305 (305)
Q Consensus       232 ayatGRRKTAiArV~L~pGsGkItVNGkpl~~YFp~~~~Re~Il~PL~vt~~lgkyDI~itVkGGGlSGQAgAI  305 (305)
                      +|++||||||+|+|||.||+|+|+|||+++++||+...+++.+++||.+++..++|||.|+|+|||+||||+||
T Consensus         2 ~y~tGrRKtaiArv~l~~G~G~I~IN~~~~~~yf~~~~~~~~~~~pl~~~~~~~~~di~v~V~GGG~sgQa~Ai   75 (126)
T d2gy9i1           2 YYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAI   75 (126)
T ss_dssp             EEECCEETTEEEEEEEEESSSCEEETTEEHHHHTTTCGGGGGGGHHHHHTTCGGGEEEEEEEESSCHHHHHHHH
T ss_pred             cccccccccEEEEEEEEecCcEEEECchhHhhhcchHhHHHHHHhHHHhhccccceeEEEEEecCCchhHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999996